Query 025719
Match_columns 249
No_of_seqs 175 out of 510
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 16:07:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025719.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025719hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1h2vc1 a.118.1.14 (C:29-290) 40.7 52 0.0038 26.2 8.3 32 197-228 141-176 (262)
2 d1i5za1 a.4.5.4 (A:138-206) Ca 32.6 23 0.0017 22.3 3.8 31 134-164 27-57 (69)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 22.0 40 0.0029 19.1 2.9 20 193-212 15-34 (37)
4 d2gaua1 a.4.5.4 (A:152-232) Tr 17.8 72 0.0053 20.0 4.1 31 134-164 27-57 (81)
5 d2e74h1 f.23.27.1 (H:3-29) Pet 12.5 1E+02 0.0074 15.9 3.6 21 108-128 5-25 (27)
6 d2gdqa2 d.54.1.1 (A:4-118) Hyp 10.5 29 0.0021 23.6 0.2 22 43-64 92-115 (115)
7 d2nn6e2 d.101.1.1 (E:192-285) 10.0 1.7E+02 0.013 18.9 4.4 27 213-239 58-84 (94)
8 d1ft9a1 a.4.5.4 (A:134-213) CO 9.5 1.5E+02 0.011 18.4 3.8 31 134-164 28-58 (80)
9 d1muca2 d.54.1.1 (A:4-130) Muc 8.8 34 0.0025 23.0 0.0 18 47-64 108-127 (127)
10 d1cjba_ c.61.1.1 (A:) Hypoxant 8.7 32 0.0023 27.1 -0.2 30 202-231 28-64 (228)
No 1
>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.68 E-value=52 Score=26.15 Aligned_cols=32 Identities=25% Similarity=0.398 Sum_probs=22.6
Q ss_pred HHHHHHHHHHH----HHHhchhhHHHHHHHHHHHHH
Q 025719 197 IALVLLHIVPV----LYEKYEDKIDPLAEKAMIEIK 228 (249)
Q Consensus 197 i~~v~~fTvP~----lYekyqd~ID~~~~k~~~~i~ 228 (249)
++.+.+.|+|- +|++.+++.++.++.+...++
T Consensus 141 ~~~~vL~~LP~~g~~l~~~~~~~~~~ll~~i~~y~~ 176 (262)
T d1h2vc1 141 YVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLK 176 (262)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 45566777774 577888888888887665543
No 2
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=32.60 E-value=23 Score=22.25 Aligned_cols=31 Identities=10% Similarity=0.220 Sum_probs=27.8
Q ss_pred ceecChHHHHHHHHHHHHHHHHHHHHHhhhh
Q 025719 134 EVHLPEEPFLQVASAFRIELNHAFAVLRSIA 164 (249)
Q Consensus 134 ~~~isee~v~~~a~~v~~~iN~~l~~lr~i~ 164 (249)
.+.++++.+-+++..-++.+|+.+..+++--
T Consensus 27 ~l~lt~~~lA~~~G~sRetvsr~L~~l~~~g 57 (69)
T d1i5za1 27 QIKITRQEIGQIVGCSRETVGRILKMLEDQN 57 (69)
T ss_dssp EEECCHHHHHHHHTCCHHHHHHHHHHHHHTT
T ss_pred ecCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 6789999999999999999999999998643
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=22.02 E-value=40 Score=19.13 Aligned_cols=20 Identities=30% Similarity=0.806 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 025719 193 TLFYIALVLLHIVPVLYEKY 212 (249)
Q Consensus 193 TLlyi~~v~~fTvP~lYeky 212 (249)
|=+|.|.++.|.+-+++..|
T Consensus 15 tsLy~GlLlifvl~vLFssY 34 (37)
T d2axtl1 15 TSLYLGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 55677778888877777665
No 4
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=17.84 E-value=72 Score=20.01 Aligned_cols=31 Identities=10% Similarity=0.077 Sum_probs=27.1
Q ss_pred ceecChHHHHHHHHHHHHHHHHHHHHHhhhh
Q 025719 134 EVHLPEEPFLQVASAFRIELNHAFAVLRSIA 164 (249)
Q Consensus 134 ~~~isee~v~~~a~~v~~~iN~~l~~lr~i~ 164 (249)
.+.++.+.+-+++..-++.+|+.+..+++--
T Consensus 27 ~~~lt~~eLA~~~G~sretvsr~L~~l~~~g 57 (81)
T d2gaua1 27 SIYLSREELATLSNMTVSNAIRTLSTFVSER 57 (81)
T ss_dssp SCCCCHHHHHHHTTSCHHHHHHHHHHHHHTT
T ss_pred eecCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 5678899999999999999999999988754
No 5
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=12.53 E-value=1e+02 Score=15.93 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHhhhccC
Q 025719 108 LILALAILFLWANAHTFIKKA 128 (249)
Q Consensus 108 ~ll~l~~lFl~s~~~~~i~k~ 128 (249)
+.+.+++.|.|+.++-..+|.
T Consensus 5 gwv~llvvftwsiamvvwgrn 25 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGRN 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred hHhHHHHHhhheeeeEEEccC
Confidence 334566778888877655543
No 6
>d2gdqa2 d.54.1.1 (A:4-118) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]}
Probab=10.52 E-value=29 Score=23.63 Aligned_cols=22 Identities=18% Similarity=0.484 Sum_probs=14.5
Q ss_pred ccccccccCCCC--CCccccccCC
Q 025719 43 SVKADIYRLFGR--ERPVHQVFGG 64 (249)
Q Consensus 43 ~~~~~~~r~f~r--~~p~h~~Lgg 64 (249)
++.--..-++|| .+|++++|||
T Consensus 92 aid~AlwDl~~K~~~~Pl~~lLGG 115 (115)
T d2gdqa2 92 AVSMALTEIAAKAADCSVCELWGG 115 (115)
T ss_dssp HHHHHHHHHHHHHTTSBHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHcCC
Confidence 444444455553 5899999998
No 7
>d2nn6e2 d.101.1.1 (E:192-285) Exosome complex exonuclease RRP42 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.02 E-value=1.7e+02 Score=18.86 Aligned_cols=27 Identities=19% Similarity=0.006 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025719 213 EDKIDPLAEKAMIEIKKQYAVFDAKVL 239 (249)
Q Consensus 213 qd~ID~~~~k~~~~i~~~y~~~~~kv~ 239 (249)
.++|+..++.|....++.++.+++.+-
T Consensus 58 ~~~i~~~i~~A~~~~~el~~~l~~~L~ 84 (94)
T d2nn6e2 58 PESIFEMMETGKRVGKVLHASLQSVVH 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999998888888887776554
No 8
>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}
Probab=9.54 E-value=1.5e+02 Score=18.35 Aligned_cols=31 Identities=16% Similarity=0.132 Sum_probs=26.4
Q ss_pred ceecChHHHHHHHHHHHHHHHHHHHHHhhhh
Q 025719 134 EVHLPEEPFLQVASAFRIELNHAFAVLRSIA 164 (249)
Q Consensus 134 ~~~isee~v~~~a~~v~~~iN~~l~~lr~i~ 164 (249)
.+.++.+.+-+++..-++.+|+.+..+++--
T Consensus 28 ~~~~t~~eiA~~lG~sretvsr~l~~l~~~g 58 (80)
T d1ft9a1 28 SVDFTVEEIANLIGSSRQTTSTALNSLIKEG 58 (80)
T ss_dssp EECCCHHHHHHHHCSCHHHHHHHHHHHHHTT
T ss_pred ecCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 3567899999999999999999999988653
No 9
>d1muca2 d.54.1.1 (A:4-130) Muconate-lactonizing enzyme (cis muconate cycloisomerase) {Pseudomonas putida [TaxId: 303]}
Probab=8.83 E-value=34 Score=23.02 Aligned_cols=18 Identities=28% Similarity=0.634 Sum_probs=12.0
Q ss_pred ccccCCCC--CCccccccCC
Q 025719 47 DIYRLFGR--ERPVHQVFGG 64 (249)
Q Consensus 47 ~~~r~f~r--~~p~h~~Lgg 64 (249)
-..-++|| .+|++++|||
T Consensus 108 AlwDl~~K~~g~Pl~~lLGG 127 (127)
T d1muca2 108 ALLDAQGKRLGLPVSELLGG 127 (127)
T ss_dssp HHHHHHHHHHTCBHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHcCC
Confidence 33444443 4899999997
No 10
>d1cjba_ c.61.1.1 (A:) Hypoxanthine-guanine PRTase (HGPRTase) {Plasmodium falciparum [TaxId: 5833]}
Probab=8.70 E-value=32 Score=27.08 Aligned_cols=30 Identities=37% Similarity=0.545 Sum_probs=20.6
Q ss_pred HHHHHHHHHhch-------hhHHHHHHHHHHHHHHHH
Q 025719 202 LHIVPVLYEKYE-------DKIDPLAEKAMIEIKKQY 231 (249)
Q Consensus 202 ~fTvP~lYekyq-------d~ID~~~~k~~~~i~~~y 231 (249)
+|++|-.|++|= ++|.+-+++...++.+.|
T Consensus 28 ~f~~p~~y~~~~~~Vli~~~~I~~rI~rLA~eI~~~y 64 (228)
T d1cjba_ 28 SFMIPAHYKKYLTKVLVPNGVIKNRIEKLAYDIKKVY 64 (228)
T ss_dssp GSCCCTTTGGGEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred hccCccchhccccEEecCHHHHHHHHHHHHHHHHHHc
Confidence 588999999884 456666666666665555
Done!