Query 025721
Match_columns 249
No_of_seqs 142 out of 1118
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 08:49:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05697 Trigger_N: Bacterial 99.9 1.9E-25 4.2E-30 184.0 15.2 113 96-223 1-113 (145)
2 COG0544 Tig FKBP-type peptidyl 99.9 2.6E-23 5.6E-28 200.8 14.9 130 96-240 1-136 (441)
3 PRK01490 tig trigger factor; P 99.9 1.5E-22 3.4E-27 192.3 14.5 114 96-224 1-114 (435)
4 TIGR00115 tig trigger factor. 99.8 5.1E-20 1.1E-24 173.5 12.7 102 108-224 1-102 (408)
5 PHA00440 host protein H-NS-int 73.9 40 0.00087 27.3 8.9 62 117-186 19-82 (98)
6 PF11247 DUF2675: Protein of u 68.5 56 0.0012 26.5 8.7 70 108-186 11-82 (98)
7 cd04920 ACT_AKiii-DAPDC_2 ACT 46.5 29 0.00063 24.5 3.4 58 73-130 3-61 (63)
8 cd04915 ACT_AK-Ectoine_2 ACT d 41.2 33 0.00072 24.5 3.0 58 73-130 5-64 (66)
9 cd04917 ACT_AKiii-LysC-EC_2 AC 38.7 57 0.0012 22.6 3.9 58 73-130 4-62 (64)
10 PF05698 Trigger_C: Bacterial 37.4 1.4E+02 0.003 24.0 6.5 71 110-191 37-113 (162)
11 PF06857 ACP: Malonate decarbo 37.0 1.3E+02 0.0028 23.6 5.9 44 95-139 15-59 (87)
12 cd04937 ACT_AKi-DapG-BS_2 ACT 33.7 40 0.00087 23.6 2.4 58 73-130 4-62 (64)
13 COG0199 RpsN Ribosomal protein 31.7 28 0.00061 25.8 1.4 18 124-142 41-58 (61)
14 KOG3018 Malonyl-CoA decarboxyl 31.3 27 0.00058 33.5 1.4 21 122-142 183-212 (362)
15 PF10458 Val_tRNA-synt_C: Valy 29.5 37 0.0008 24.7 1.7 33 122-162 15-47 (66)
16 PRK13253 citrate lyase subunit 26.2 2.6E+02 0.0057 22.2 6.1 44 95-139 16-60 (92)
17 cd04890 ACT_AK-like_1 ACT doma 25.8 63 0.0014 22.1 2.3 41 90-130 21-61 (62)
18 PRK02103 malonate decarboxylas 22.9 2.3E+02 0.005 23.2 5.3 46 95-141 30-76 (105)
19 cd04911 ACT_AKiii-YclM-BS_1 AC 22.0 64 0.0014 24.7 1.8 46 90-135 22-68 (76)
20 COG2036 HHT1 Histones H3 and H 21.9 2E+02 0.0044 22.8 4.7 33 150-183 22-54 (91)
21 cd04922 ACT_AKi-HSDH-ThrA_2 AC 20.9 1.3E+02 0.0029 20.2 3.1 58 73-130 4-64 (66)
22 TIGR03130 malonate_delta malon 20.7 2.8E+02 0.006 22.4 5.3 46 95-141 28-74 (98)
23 PF10691 DUF2497: Protein of u 20.6 3.1E+02 0.0067 20.9 5.3 60 117-185 7-66 (73)
24 PRK01220 malonate decarboxylas 20.5 2.6E+02 0.0057 22.7 5.1 46 95-141 27-72 (99)
25 KOG2801 Probable Rab-GAPs [Int 20.5 2.7E+02 0.006 27.2 6.1 39 152-191 282-320 (559)
No 1
>PF05697 Trigger_N: Bacterial trigger factor protein (TF); InterPro: IPR008881 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This group of sequences contain the ribosomal subunit association domain.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 2D3O_1 1W26_A 1P9Y_A 1OMS_C 1T11_A 3GU0_A 2NSB_A 2NSC_A 3GTY_X.
Probab=99.93 E-value=1.9e-25 Score=183.98 Aligned_cols=113 Identities=26% Similarity=0.556 Sum_probs=101.4
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 025721 96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 175 (249)
Q Consensus 96 MkVtve~le~~ki~LtVeVp~eevq~~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~Eai~elI~ 175 (249)
|+|+++..+++.+.++|+|++++++.+++++|++++++++ |||||| | |||+++|+++||.+ |++++++++++
T Consensus 1 M~v~~~~~~~~~~~~~v~v~~~~~~~~~~~~l~~~~k~~~-ipGFRk--G----K~P~~vi~~~~g~~-i~~~~~~~~~~ 72 (145)
T PF05697_consen 1 MKVTVEKIEDSKVKLEVEVPAEEVEKAYEKALKELAKKVK-IPGFRK--G----KAPRNVIEKRYGKE-IREEAIEELLQ 72 (145)
T ss_dssp -EEEEEEESTTEEEEEEEE-HHHHHHHHHHHHHHHHTTTT-BTTS-T--T----SS-HHHHHHHHCHH-HHHHHHHHHHH
T ss_pred CccEEEECCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCC-CCCCCC--C----CCCHHHHHHHHHHH-HHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 999999 9 99999999999996 99999999999
Q ss_pred HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 025721 176 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK 223 (249)
Q Consensus 176 ~~~~eAlkee~L~pvg~~P~i~~~~eeL~~~f~~g~~f~Fta~veV~~ 223 (249)
.+|.+|+++++++|++ .|.+. ...+++|++|+|++.|++.+
T Consensus 73 ~~~~~~~~~~~~~~i~-~p~i~------~~~~~~~~~~~~~~~~~~~P 113 (145)
T PF05697_consen 73 EAYEEAIKEEKIKPIG-DPEIE------EKDFKEGEDFEFEVEFEVFP 113 (145)
T ss_dssp HHHHHHHHHTTS-ESS-EEEEE------EEEEETTS-EEEEEEEEE--
T ss_pred HHHHHHHHHcCCCccc-ccccc------ccccccCCCEEEEEEEEecC
Confidence 9999999999999999 99885 35788999999999999973
No 2
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.6e-23 Score=200.76 Aligned_cols=130 Identities=29% Similarity=0.493 Sum_probs=119.0
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 025721 96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 175 (249)
Q Consensus 96 MkVtve~le~~ki~LtVeVp~eevq~~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~Eai~elI~ 175 (249)
|++++++++++.+.|+|+||++.+++.++++|++++++++ |||||| | |||+.||+++|| +.|++++++++|+
T Consensus 1 M~v~~e~~~~~~~~l~v~vp~~~~~~~~~~~~~~~~k~v~-IpGFRk--G----KvP~~ii~~ryg-~~v~~d~~~~ll~ 72 (441)
T COG0544 1 MKVTVEKLEGLEVRLTVEVPAEEIKKALDKALKKLAKKVK-IPGFRK--G----KVPRKVIEQRYG-EAVRQDVLNELLP 72 (441)
T ss_pred CCeeeeecCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCc-CCCCCC--C----CCCHHHHHHHHh-HHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999 999999 9 999999999999 5799999999999
Q ss_pred HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEee------cCCcccccccccCCCCCc
Q 025721 176 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELE------KSEVEESETETSSSSSSD 240 (249)
Q Consensus 176 ~~~~eAlkee~L~pvg~~P~i~~~~eeL~~~f~~g~~f~Fta~veV~------~~E~~e~~~~~~~~~~~~ 240 (249)
.+|.+|+++++|+|++ +|.+. ...++.|++|.|++.++|+ .+.+.+++..+.+.++.|
T Consensus 73 ~~~~~a~~e~~~~~~~-~p~~~------~~~~e~~~~~~f~~~~ev~Pev~l~d~~~i~v~~~~~ev~d~d 136 (441)
T COG0544 73 EAFEEAIKEEGLKPAG-QPEIE------ITEFEKGEDFEFTAEVEVYPEVELGDYKGIEVEKPVVEVTDED 136 (441)
T ss_pred HHHHHHHHHhCcCcCC-CCCcc------cccccCCCceEEEEEEEEeeceecCccccceeecCCcccCHHH
Confidence 9999999999999999 99765 3578899999999999998 456777777777777443
No 3
>PRK01490 tig trigger factor; Provisional
Probab=99.89 E-value=1.5e-22 Score=192.25 Aligned_cols=114 Identities=25% Similarity=0.456 Sum_probs=107.9
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 025721 96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 175 (249)
Q Consensus 96 MkVtve~le~~ki~LtVeVp~eevq~~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~Eai~elI~ 175 (249)
|+++++.++++++.|+|+||+++|+..+++++++++++++ |||||| | |||+++|+++||++ |++++++++|+
T Consensus 1 M~v~~~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----kvP~~ii~k~~g~~-i~~e~~~~li~ 72 (435)
T PRK01490 1 MQVTVEKLEGLERRLTITVPAEEIEKAVDKALKKLAKTVR-IPGFRK--G----KVPRKIVEQRYGES-VRQEALNDLLP 72 (435)
T ss_pred CcceEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHHhhCc-CCCccC--C----CCCHHHHHHHHhHH-HHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999 999999 9 99999999999985 99999999999
Q ss_pred HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeecC
Q 025721 176 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKS 224 (249)
Q Consensus 176 ~~~~eAlkee~L~pvg~~P~i~~~~eeL~~~f~~g~~f~Fta~veV~~~ 224 (249)
.+|.+|+++++|+|++ +|.+.. ..++++++|+|+++|+|+|.
T Consensus 73 ~~~~~~i~~~~~~~~~-~p~i~~------~~~~~~~~~~~~~~~~v~Pe 114 (435)
T PRK01490 73 EAYEEAIKEEGIRPAG-QPEIEP------TEEEKGKDLEFTAEVEVYPE 114 (435)
T ss_pred HHHHHHHHHcCCCcCC-CCcccc------cccCCCCcEEEEEEeeecCC
Confidence 9999999999999999 999862 45778899999999999843
No 4
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=99.82 E-value=5.1e-20 Score=173.55 Aligned_cols=102 Identities=26% Similarity=0.487 Sum_probs=95.1
Q ss_pred EEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 025721 108 IQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGL 187 (249)
Q Consensus 108 i~LtVeVp~eevq~~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~Eai~elI~~~~~eAlkee~L 187 (249)
+.|+|+||+++++..++++|++++++++ |||||| | |||+++|+++||++ |+.++++++|+.+|.+|+++++|
T Consensus 1 ~~l~v~v~~~~~~~~~~k~~~~~~k~~~-ipGFRk--G----KvP~~~i~k~~g~~-i~~e~~~~li~~~~~~~~~~~~~ 72 (408)
T TIGR00115 1 RKLTVEVPAEEVEEEVDKALKELAKKVK-IPGFRK--G----KVPRSVVEKRYGKE-VRQEALNELLQEAFSEAVKEEKI 72 (408)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhhCC-CCCccC--C----CCCHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHhCCC
Confidence 3689999999999999999999999999 999999 9 99999999999984 99999999999999999999999
Q ss_pred ccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeecC
Q 025721 188 NVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEKS 224 (249)
Q Consensus 188 ~pvg~~P~i~~~~eeL~~~f~~g~~f~Fta~veV~~~ 224 (249)
+|+| +|.+. ...+.+|++|+|+++|++.|.
T Consensus 73 ~~~~-~p~~~------~~~~~~~~~~~~~~~~~v~Pe 102 (408)
T TIGR00115 73 RPIG-QPEIE------VKEIEDGKDLEFTAEFEVYPE 102 (408)
T ss_pred CcCC-CCccc------cccccCCCCEEEEEEEEecCc
Confidence 9999 99986 246778999999999999843
No 5
>PHA00440 host protein H-NS-interacting protein
Probab=73.87 E-value=40 Score=27.31 Aligned_cols=62 Identities=23% Similarity=0.451 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHcC
Q 025721 117 DATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQIL--GEERVTKFVVQEIVRSTLTDYTKKEG 186 (249)
Q Consensus 117 eevq~~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~y--G~e~I~~Eai~elI~~~~~eAlkee~ 186 (249)
.+.++.+.+.|.+|++++. - |-+...--+.+|.|-+ |.+.+...++++=|.+.+.+.+.+..
T Consensus 19 se~e~~~~e~l~~Lak~v~------~--GE~~~~~~re~lvqaLT~G~egai~F~~k~giRe~IKe~~~E~~ 82 (98)
T PHA00440 19 SETEAILEEDILDLAKQAG------A--GEEVNPKDKELLVQALTHGPEGAAAFAVRQGIREAIKDMHEEST 82 (98)
T ss_pred hHHHHHHHHHHHHHHhhcC------C--cccCChHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHhHhhc
Confidence 5678899999999999996 3 5444445678888876 77777777777777766666666544
No 6
>PF11247 DUF2675: Protein of unknown function (DUF2675) ; InterPro: IPR022611 Members in this family of proteins include Bacteriophage T7 gene 5.5; they have no known function.
Probab=68.55 E-value=56 Score=26.49 Aligned_cols=70 Identities=24% Similarity=0.425 Sum_probs=47.1
Q ss_pred EEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHc
Q 025721 108 IQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQIL--GEERVTKFVVQEIVRSTLTDYTKKE 185 (249)
Q Consensus 108 i~LtVeVp~eevq~~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~y--G~e~I~~Eai~elI~~~~~eAlkee 185 (249)
..++..++.+.. +.+.+.+-.|++++- . |-|.+.--+.+|.+-+ |.+.+...++..-+.+.+.+.+.+.
T Consensus 11 F~vtav~~se~e-~~~~e~ll~Lak~v~------~--GE~~~~~~re~l~qaLT~G~egav~f~~k~g~R~~IKe~~~E~ 81 (98)
T PF11247_consen 11 FDVTAVIDSEQE-EEFEEDLLELAKKVG------A--GEKVSGFQREMLVQALTHGPEGAVAFVVKQGIREAIKEMLSEY 81 (98)
T ss_pred EEEEEEeCHHHH-HHHHHHHHHHHhhcC------C--ccccCHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566666555 667777788888885 1 3333234567888765 7777877877777777777777766
Q ss_pred C
Q 025721 186 G 186 (249)
Q Consensus 186 ~ 186 (249)
.
T Consensus 82 s 82 (98)
T PF11247_consen 82 S 82 (98)
T ss_pred c
Confidence 5
No 7
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.52 E-value=29 Score=24.55 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=41.2
Q ss_pred eeeecCCCccccC-CccccccccCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHH
Q 025721 73 VSAVDSGVEVSIT-EPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNL 130 (249)
Q Consensus 73 ~~~~~sg~~~s~~-~~~~~s~~~~MkVtve~le~~ki~LtVeVp~eevq~~~dkalkkl 130 (249)
||.||.|.....- -.+-+..|.+.++.+.....+.+.+++-|+.++.++++...-.++
T Consensus 3 VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i~~~~s~~~is~vv~~~d~~~av~~LH~~f 61 (63)
T cd04920 3 VSLVGRGIRSLLHKLGPALEVFGKKPVHLVSQAANDLNLTFVVDEDQADGLCARLHFQL 61 (63)
T ss_pred EEEECCCcccCccHHHHHHHHHhcCCceEEEEeCCCCeEEEEEeHHHHHHHHHHHHHHH
Confidence 6788888754211 112222356667888889999999999999999988887765554
No 8
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=41.20 E-value=33 Score=24.55 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=39.3
Q ss_pred eeeecCCCccccCCccccccccCc--EEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHH
Q 025721 73 VSAVDSGVEVSITEPEDLITVKDA--KIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNL 130 (249)
Q Consensus 73 ~~~~~sg~~~s~~~~~~~s~~~~M--kVtve~le~~ki~LtVeVp~eevq~~~dkalkkl 130 (249)
||.||.|....-.-.+-++.+.+- ++.......++..+.+-|+.++.++++....+.+
T Consensus 5 VsvVG~gm~~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~~V~~~~~~~av~~Lh~~f 64 (66)
T cd04915 5 VSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVVDRDDYDNAIKALHAAL 64 (66)
T ss_pred EEEECCCCCcchHHHHHHHHHHHCCCCEEEEEecCCeeEEEEEEEHHHHHHHHHHHHHHH
Confidence 678888884211112333334443 4444777788999999999999999988877665
No 9
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.73 E-value=57 Score=22.64 Aligned_cols=58 Identities=9% Similarity=0.138 Sum_probs=39.8
Q ss_pred eeeecCCCccc-cCCccccccccCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHH
Q 025721 73 VSAVDSGVEVS-ITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNL 130 (249)
Q Consensus 73 ~~~~~sg~~~s-~~~~~~~s~~~~MkVtve~le~~ki~LtVeVp~eevq~~~dkalkkl 130 (249)
|+.++.|.... -.-.+-++.+.+..+.+-....+...+.+-|+.++.++++....+++
T Consensus 4 IsvvG~~~~~~~~v~~~i~~~L~~i~i~~i~~~~s~~~is~~V~~~~~~~a~~~Lh~~f 62 (64)
T cd04917 4 VALIGNDISETAGVEKRIFDALEDINVRMICYGASNHNLCFLVKEEDKDEVVQRLHSRL 62 (64)
T ss_pred EEEECCCccCCcCHHHHHHHHHHhCCeEEEEEecCccEEEEEEeHHHHHHHHHHHHHHH
Confidence 56777776431 11112233345667777788889999999999999988888776655
No 10
>PF05698 Trigger_C: Bacterial trigger factor protein (TF) C-terminus; InterPro: IPR008880 In the Escherichia coli cytosol, a fraction of the newly synthesised proteins requires the activity of molecular chaperones for folding to the native state. The major chaperones implicated in this folding process are the ribosome-associated Trigger Factor (TF), and the DnaK and GroEL chaperones with their respective co-chaperones. Trigger Factor is an ATP-independent chaperone and displays chaperone and peptidyl-prolyl-cis-trans-isomerase (PPIase) activities in vitro. It is composed of at least three domains, an N-terminal domain which mediates association with the large ribosomal subunit, a central substrate binding and PPIase domain with homology to FKBP proteins, and a C-terminal domain of unknown function. The positioning of TF at the peptide exit channel, together with its ability to interact with nascent chains as short as 57 residues renders TF a prime candidate for being the first chaperone that binds to the nascent polypeptide chains []. This entry represents the C-terminal domain of bacterial trigger factor proteins, which has a multi-helical structure consisting of an irregular array of long and short helices. This domain is structurally similar to the peptide-binding domain of the bacterial porin chaperone SurA.; GO: 0006457 protein folding, 0015031 protein transport; PDB: 1T11_A 3GU0_A 3GTY_X 2NSA_A 1ZXJ_A 1W26_A.
Probab=37.45 E-value=1.4e+02 Score=23.98 Aligned_cols=71 Identities=18% Similarity=0.314 Sum_probs=39.3
Q ss_pred EEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCC-----CCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHHH-HHHHHH
Q 025721 110 VRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREK-----GGKTTKVPRDFLIQILGEERVTKFVVQEIVRST-LTDYTK 183 (249)
Q Consensus 110 LtVeVp~eevq~~~dkalkklaKkakpIPGFRK~k-----Ggk~~KVP~~VIek~yG~e~I~~Eai~elI~~~-~~eAlk 183 (249)
.+|++|...++..++..++++...+. --|-.... | .-+. .|.. .+..++.+.+-... +..+.+
T Consensus 37 ~~~~lP~~lv~~~~~~~~~~~~~~~~-~~g~~~e~~~~~~~----~~~~-----~~~~-~~~~~a~~~lk~~lil~~Ia~ 105 (162)
T PF05698_consen 37 SEVELPESLVEEEIERLIEQMEQQLK-QQGMSLEQYLQMSG----KTEE-----EFRE-EFREEAEKRLKQQLILDAIAK 105 (162)
T ss_dssp EEEEE-HHHHHHHHHHHHHHHHHTT----TSSCCCHHHHHC----TCCC-----SHCH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhh-hhhhHHHHHHHhcC----CCHH-----HHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999996 44443311 1 1111 1222 35555555554443 445567
Q ss_pred HcCCccCC
Q 025721 184 KEGLNVKD 191 (249)
Q Consensus 184 ee~L~pvg 191 (249)
.++|.+-.
T Consensus 106 ~e~I~v~~ 113 (162)
T PF05698_consen 106 KEKIEVSD 113 (162)
T ss_dssp HTT----H
T ss_pred HcCCCCCH
Confidence 78887644
No 11
>PF06857 ACP: Malonate decarboxylase delta subunit (MdcD); InterPro: IPR023439 This family consists of the acyl carrier protein found in malonate decarboxylase and citrate lyase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=37.04 E-value=1.3e+02 Score=23.60 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=31.5
Q ss_pred CcEEEEEecCCceEEEEEEeC-HHHHHHHHHHHHHHHhhcCCCCCC
Q 025721 95 DAKIVVESQDEDKIQVRVDLT-GDATQRVFDKVLTNLARSAPPIPG 139 (249)
Q Consensus 95 ~MkVtve~le~~ki~LtVeVp-~eevq~~~dkalkklaKkakpIPG 139 (249)
|+.|.++..+...+.+.++=+ ...+...+++++.+.-+... |++
T Consensus 15 D~~V~v~p~~~~gi~i~l~S~v~~~fg~~i~~vi~~~l~~~~-i~~ 59 (87)
T PF06857_consen 15 DLEVTVEPAESGGIEIELESSVVKQFGDQIRAVIRETLEELG-IED 59 (87)
T ss_pred cEEEEEEeCCCCcEEEEEEchHHhhhHHHHHHHHHHHHHhcC-CCc
Confidence 478999999888888888888 55666666666666666655 554
No 12
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=33.73 E-value=40 Score=23.61 Aligned_cols=58 Identities=7% Similarity=0.098 Sum_probs=37.7
Q ss_pred eeeecCCCcccc-CCccccccccCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHH
Q 025721 73 VSAVDSGVEVSI-TEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNL 130 (249)
Q Consensus 73 ~~~~~sg~~~s~-~~~~~~s~~~~MkVtve~le~~ki~LtVeVp~eevq~~~dkalkkl 130 (249)
|+.+++|..... .-.+-++.+.+..+.+.....++..+.+-|+.++.++++....+.+
T Consensus 4 isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~Se~~is~~v~~~~~~~av~~Lh~~f 62 (64)
T cd04937 4 VTIIGSRIRGVPGVMAKIVGALSKEGIEILQTADSHTTISCLVSEDDVKEAVNALHEAF 62 (64)
T ss_pred EEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEcCccEEEEEEcHHHHHHHHHHHHHHh
Confidence 567777774421 1112333345555555555558999999999999998887766654
No 13
>COG0199 RpsN Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]
Probab=31.70 E-value=28 Score=25.82 Aligned_cols=18 Identities=28% Similarity=0.576 Sum_probs=15.5
Q ss_pred HHHHHHHhhcCCCCCCCcC
Q 025721 124 DKVLTNLARSAPPIPGFRR 142 (249)
Q Consensus 124 dkalkklaKkakpIPGFRK 142 (249)
-..++++|-+=+ ||||+|
T Consensus 41 R~cfRE~A~~g~-ipGv~K 58 (61)
T COG0199 41 RICFRELAHKGE-IPGVKK 58 (61)
T ss_pred HHHHHHHhhccC-CCCeEe
Confidence 356889999999 999998
No 14
>KOG3018 consensus Malonyl-CoA decarboxylase [Carbohydrate transport and metabolism]
Probab=31.26 E-value=27 Score=33.47 Aligned_cols=21 Identities=38% Similarity=0.809 Sum_probs=15.6
Q ss_pred HHHHHHHHHhhcC---------CCCCCCcC
Q 025721 122 VFDKVLTNLARSA---------PPIPGFRR 142 (249)
Q Consensus 122 ~~dkalkklaKka---------kpIPGFRK 142 (249)
.+.++++.+.|.. .||||||+
T Consensus 183 LIKrV~t~lqkd~Phv~tfstLSPIPGF~~ 212 (362)
T KOG3018|consen 183 LIKRVITLLQKDMPHVSTFSTLSPIPGFMQ 212 (362)
T ss_pred HHHHHHHHHHhcCCccccccccCCCccHHH
Confidence 4567777777754 58999986
No 15
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=29.47 E-value=37 Score=24.66 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCH
Q 025721 122 VFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGE 162 (249)
Q Consensus 122 ~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~yG~ 162 (249)
.+++-+..+.++.. -|||.. |||..|+++.-.+
T Consensus 15 kl~~~i~~~~~kL~-n~~F~~-------kAP~eVve~er~k 47 (66)
T PF10458_consen 15 KLEKEIERLEKKLS-NENFVE-------KAPEEVVEKEREK 47 (66)
T ss_dssp HHHHHHHHHHHHHC-STTHHH-------HS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-Cccccc-------cCCHHHHHHHHHH
Confidence 34556667777788 899999 8999999986643
No 16
>PRK13253 citrate lyase subunit gamma; Provisional
Probab=26.16 E-value=2.6e+02 Score=22.17 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=27.7
Q ss_pred CcEEEEEecCCceEEEEEEeCHH-HHHHHHHHHHHHHhhcCCCCCC
Q 025721 95 DAKIVVESQDEDKIQVRVDLTGD-ATQRVFDKVLTNLARSAPPIPG 139 (249)
Q Consensus 95 ~MkVtve~le~~ki~LtVeVp~e-evq~~~dkalkklaKkakpIPG 139 (249)
|+.|.++..++..+.+.|+=+.. .+...+++++.+.-.... +++
T Consensus 16 Dl~V~veP~~~~~i~i~i~SsV~~~Fg~~i~~vv~~~l~~~~-v~~ 60 (92)
T PRK13253 16 DVMIRIAPADTQGIDIQLESSVEKQFGDQIRAVILETLAKLG-VEN 60 (92)
T ss_pred CEEEEEEeCCCCcEEEEEEeeHHhhhHHHHHHHHHHHHHhcC-CCc
Confidence 47888998755567777776666 555555555555555554 444
No 17
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=25.83 E-value=63 Score=22.05 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=29.6
Q ss_pred cccccCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHH
Q 025721 90 LITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNL 130 (249)
Q Consensus 90 ~s~~~~MkVtve~le~~ki~LtVeVp~eevq~~~dkalkkl 130 (249)
|+.+++..+.+.-.......+.+.++..+.++.+++.+++|
T Consensus 21 f~~l~~~~i~v~~i~t~~~~is~~v~~~~~~~~~~~l~~~l 61 (62)
T cd04890 21 FEILEKHGISVDLIPTSENSVTLYLDDSLLPKKLKRLLAEL 61 (62)
T ss_pred HHHHHHcCCeEEEEecCCCEEEEEEehhhhhHHHHHHHHhh
Confidence 34555555666666556688999999988888888777765
No 18
>PRK02103 malonate decarboxylase subunit delta; Provisional
Probab=22.88 E-value=2.3e+02 Score=23.20 Aligned_cols=46 Identities=15% Similarity=0.265 Sum_probs=39.1
Q ss_pred CcEEEEEecC-CceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 025721 95 DAKIVVESQD-EDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFR 141 (249)
Q Consensus 95 ~MkVtve~le-~~ki~LtVeVp~eevq~~~dkalkklaKkakpIPGFR 141 (249)
||+|-++... +.+..+.|.-+..=+....+.++.++..... .+|=|
T Consensus 30 dLEVL~ep~~~~~~~~v~I~Tsv~Gf~~~WqaVl~~f~~r~~-~~~~~ 76 (105)
T PRK02103 30 NLEVLVERVLPGGECEVEIRTAAVGFGAVWQAVVADFVERRS-PGGLR 76 (105)
T ss_pred ceEEEEeccCCCCeEEEEEEecccCcHHHHHHHHHHHHhhCC-CCccE
Confidence 5788888887 7999999999999888999999999988886 77655
No 19
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.02 E-value=64 Score=24.65 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=39.8
Q ss_pred cccccCcEEEEEecCCceEEEEEEeCHHHHHH-HHHHHHHHHhhcCC
Q 025721 90 LITVKDAKIVVESQDEDKIQVRVDLTGDATQR-VFDKVLTNLARSAP 135 (249)
Q Consensus 90 ~s~~~~MkVtve~le~~ki~LtVeVp~eevq~-~~dkalkklaKkak 135 (249)
.+.+++-.+.+|..+...-.++|.+...+++. ..+++++++.+.++
T Consensus 22 L~I~E~~~is~Eh~PSGID~~Siii~~~~~~~~~~~~i~~~i~~~~~ 68 (76)
T cd04911 22 LSILEDNGISYEHMPSGIDDISIIIRDNQLTDEKEQKILAEIKEELH 68 (76)
T ss_pred HHHHHHcCCCEeeecCCCccEEEEEEccccchhhHHHHHHHHHHhcC
Confidence 33556667779999999999999999999999 99999999999877
No 20
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=21.91 E-value=2e+02 Score=22.78 Aligned_cols=33 Identities=27% Similarity=0.548 Sum_probs=22.3
Q ss_pred CCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Q 025721 150 KVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTK 183 (249)
Q Consensus 150 KVP~~VIek~yG~e~I~~Eai~elI~~~~~eAlk 183 (249)
++|..=|.+..|.++|-.+|++.+ ++.+.+++.
T Consensus 22 ~apv~Ri~r~~~~~Rvs~~A~~~l-~~~~e~~~~ 54 (91)
T COG2036 22 KAPVRRILRKAGAERVSSSAIEEL-QEALEEYLE 54 (91)
T ss_pred chHHHHHHHHHhHHHhhHHHHHHH-HHHHHHHHH
Confidence 678888888899888877776554 344444433
No 21
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=20.86 E-value=1.3e+02 Score=20.23 Aligned_cols=58 Identities=10% Similarity=0.176 Sum_probs=32.9
Q ss_pred eeeecCCCccccC-CccccccccCcEEEE--EecCCceEEEEEEeCHHHHHHHHHHHHHHH
Q 025721 73 VSAVDSGVEVSIT-EPEDLITVKDAKIVV--ESQDEDKIQVRVDLTGDATQRVFDKVLTNL 130 (249)
Q Consensus 73 ~~~~~sg~~~s~~-~~~~~s~~~~MkVtv--e~le~~ki~LtVeVp~eevq~~~dkalkkl 130 (249)
|+.+++|+..... -.+=++.+.+..+.+ -....+...+.+.|+.++...++....+.+
T Consensus 4 isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~~~~~~~~lh~~~ 64 (66)
T cd04922 4 LALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAVHERF 64 (66)
T ss_pred EEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHH
Confidence 6777887765211 011122334443333 332335689999999998887766655543
No 22
>TIGR03130 malonate_delta malonate decarboxylase acyl carrier protein. Members of this protein family are the acyl carrier protein, also called the delta subunit, of malonate decarboxylase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=20.69 E-value=2.8e+02 Score=22.45 Aligned_cols=46 Identities=24% Similarity=0.437 Sum_probs=37.9
Q ss_pred CcEEEEEecC-CceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 025721 95 DAKIVVESQD-EDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFR 141 (249)
Q Consensus 95 ~MkVtve~le-~~ki~LtVeVp~eevq~~~dkalkklaKkakpIPGFR 141 (249)
||+|-++... +.+..+.|.-+..=+....+.++.++..... .+|=|
T Consensus 28 dLEVL~ep~~~~~~~~v~I~Tsv~Gf~~~Wqavl~rf~~~~~-~~~~~ 74 (98)
T TIGR03130 28 DLEVLVEPGAEGGKTEVRITTSVDGFGAVWQAVIERFFARYP-LAGLQ 74 (98)
T ss_pred ceEEEEEcCCCCCeEEEEEEecccCcHHHHHHHHHHHHhhCC-CCccE
Confidence 5788888854 8899999999998888888888888888876 77644
No 23
>PF10691 DUF2497: Protein of unknown function (DUF2497) ; InterPro: IPR019632 Members of this family belong to the Alphaproteobacteria. The function of the family is not known.
Probab=20.59 E-value=3.1e+02 Score=20.86 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHc
Q 025721 117 DATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKE 185 (249)
Q Consensus 117 eevq~~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~Eai~elI~~~~~eAlkee 185 (249)
.....+...++.+++..+. ...... | ..=-++++.++-+ ..++++++=++..+.+.+++|
T Consensus 7 ~~~~~~~~~~f~~L~~~~~-~~~~~~--~----~TlE~lvremLRP--mLkeWLD~nLP~lVErlVr~E 66 (73)
T PF10691_consen 7 PETAEAVASAFAKLASAIR-QISPSS--G----RTLEDLVREMLRP--MLKEWLDENLPGLVERLVREE 66 (73)
T ss_pred hhHHHHHHHHHHHHHHHHH-hccccc--c----ccHHHHHHHHHHH--HHHHHHHhccHHHHHHHHHHH
Confidence 3455666777777777766 222233 3 3446777777755 566777777777777776654
No 24
>PRK01220 malonate decarboxylase subunit delta; Provisional
Probab=20.51 E-value=2.6e+02 Score=22.65 Aligned_cols=46 Identities=13% Similarity=0.295 Sum_probs=38.1
Q ss_pred CcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCc
Q 025721 95 DAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFR 141 (249)
Q Consensus 95 ~MkVtve~le~~ki~LtVeVp~eevq~~~dkalkklaKkakpIPGFR 141 (249)
||+|-++...+.+..+.|.-+..=+....+.++.++..... .+|=|
T Consensus 27 dLEVL~ep~~~~~~~v~I~Tsv~Gf~~~Wqavl~rf~~~~~-~~~~~ 72 (99)
T PRK01220 27 DLEVLLEPGDAGKLSIQVVTSVNGSAARWKALFERFFTAQT-PPAAN 72 (99)
T ss_pred ceEEEEEcCCCCcEEEEEEecccCcHHHHHHHHHHHHhhCC-CCccE
Confidence 57888888888999999999998888888888888888876 66544
No 25
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.46 E-value=2.7e+02 Score=27.25 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=30.3
Q ss_pred cHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Q 025721 152 PRDFLIQILGEERVTKFVVQEIVRSTLTDYTKKEGLNVKD 191 (249)
Q Consensus 152 P~~VIek~yG~e~I~~Eai~elI~~~~~eAlkee~L~pvg 191 (249)
|.+++++.|.- ++...---++++.+-.+|+++.+|++..
T Consensus 282 pekllekafai-rlfsrkeiqllqmanekalkqkgitvkq 320 (559)
T KOG2801|consen 282 PEKLLEKAFAI-RLFSRKEIQLLQMANEKALKQKGITVKQ 320 (559)
T ss_pred HHHHHHHHHHH-HHhhHHHHHHHHHhhHHHHHhcCceeee
Confidence 67888888854 4555555567888999999999998865
Done!