Query 025721
Match_columns 249
No_of_seqs 142 out of 1118
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 16:09:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025721.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025721hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1p9y_A Trigger factor, TF; alp 100.0 4.1E-29 1.4E-33 201.3 15.2 114 95-223 3-116 (121)
2 2d3o_1 Trigger factor, TF; rib 100.0 1.6E-29 5.4E-34 201.0 6.8 112 96-223 1-112 (112)
3 2nsc_A Trigger factor, TF; cha 99.9 3.2E-28 1.1E-32 192.7 8.0 109 96-223 1-109 (109)
4 1t11_A Trigger factor, TF; hel 99.9 4.1E-25 1.4E-29 207.7 16.9 131 95-240 3-139 (392)
5 1w26_A Trigger factor, TF; cha 99.9 7.7E-25 2.6E-29 208.0 12.0 129 96-239 1-135 (432)
6 3gty_X Trigger factor, TF; cha 99.8 1.2E-20 4.2E-25 179.3 7.1 109 96-223 1-109 (433)
7 4a20_A Ubiquitin-like protein 41.4 28 0.00097 26.1 4.0 41 87-127 11-51 (98)
8 2kl8_A OR15; structural genomi 23.6 1.1E+02 0.0037 22.4 4.4 36 101-137 35-70 (85)
9 1wx7_A Ubiquilin 3; ubiquitin- 21.4 1.2E+02 0.0042 22.1 4.5 45 75-128 3-47 (106)
10 4dbg_A Ranbp-type and C3HC4-ty 21.2 94 0.0032 23.9 3.9 33 95-127 24-56 (105)
11 3kg0_A Snoab; polyketide, anth 20.4 50 0.0017 25.6 2.2 36 105-142 23-58 (128)
No 1
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=99.96 E-value=4.1e-29 Score=201.28 Aligned_cols=114 Identities=24% Similarity=0.386 Sum_probs=108.2
Q ss_pred CcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHH
Q 025721 95 DAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIV 174 (249)
Q Consensus 95 ~MkVtve~le~~ki~LtVeVp~eevq~~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~Eai~elI 174 (249)
.|+++++++++++++|+|+||+++++++++++|++++++++ |||||| | |||+++|+++||+ .|++++++++|
T Consensus 3 ~M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~v~-ipGFRk--G----KvP~~vi~k~yG~-~v~~ea~~~~i 74 (121)
T 1p9y_A 3 HMQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVR-IDGLRK--G----KVPMNIVAQRYGA-SVRQDVLGDLM 74 (121)
T ss_dssp -CEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCT--T----CSCHHHHHHHHHH-HHHHHHHHHHH
T ss_pred cceEEEEECCCcEEEEEEEECHHHHHHHHHHHHHHHHhhCc-cCCcCC--C----CCCHHHHHHHHHH-HHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999 999999 9 9999999999997 59999999999
Q ss_pred HHHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 025721 175 RSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK 223 (249)
Q Consensus 175 ~~~~~eAlkee~L~pvg~~P~i~~~~eeL~~~f~~g~~f~Fta~veV~~ 223 (249)
+++|.+|+++++|+|++ +|.++. ..+++|++|+|+++|+|++
T Consensus 75 ~~~~~~ai~e~~l~~~~-~P~i~~------~~~~~~~~~~f~~~~ev~P 116 (121)
T 1p9y_A 75 SRNFIDAIIKEKINPAG-APTYVP------GEYKLGEDFTYSVEFEVYP 116 (121)
T ss_dssp HHHHHHHHHHTTCCCEE-EEEEEE------CCCCSSSCEEEEEEEECCC
T ss_pred HHHHHHHHHHcCCCCCC-CCcccc------cccCCCCCEEEEEEEEEcC
Confidence 99999999999999999 999862 4578899999999999984
No 2
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=99.96 E-value=1.6e-29 Score=201.03 Aligned_cols=112 Identities=24% Similarity=0.455 Sum_probs=95.6
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 025721 96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 175 (249)
Q Consensus 96 MkVtve~le~~ki~LtVeVp~eevq~~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~Eai~elI~ 175 (249)
|++++++ ++++++|+|+||+++++++++++|++++++++ |||||| | |||+++|+++||++.|++++++++|+
T Consensus 1 M~v~~e~-~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~vi~k~yG~~~v~~ea~~~~i~ 72 (112)
T 2d3o_1 1 MAELISK-EGNKVEFKVSVPAAEVNRAYDQVWAGLARDVR-VPGFRP--G----KAPRKVIENRVGKGYVESQVRDRLLE 72 (112)
T ss_dssp ----------CCEEEEECCCGGGTHHHHHHHHHHHHTTSC-BTTBCT--T----CCCSTTHHHHTTTTSSHHHHHHHHHH
T ss_pred CceEEEc-CCcEEEEEEEECHHHHHHHHHHHHHHHHhhCC-CCCcCC--C----CCCHHHHHHHhCHHHHHHHHHHHHHH
Confidence 8899999 99999999999999999999999999999999 999999 9 99999999999955799999999999
Q ss_pred HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 025721 176 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK 223 (249)
Q Consensus 176 ~~~~eAlkee~L~pvg~~P~i~~~~eeL~~~f~~g~~f~Fta~veV~~ 223 (249)
++|.+|+++++|+|++ +|.++ .. +++|++|+|+++|+|++
T Consensus 73 ~~~~~ai~e~~l~~~~-~P~i~------~~-~~~~~~~~f~~~~ev~P 112 (112)
T 2d3o_1 73 THYSQGLRELGLNLVD-ATVDP------QD-VQSGQAFEFTVKGETYP 112 (112)
T ss_dssp HHHHHHHHHSCCCCCC-EECCC------CC-CCSSSCCCEEEEEC---
T ss_pred HHHHHHHHHcCCCCCC-CCccc------cc-ccCCCCEEEEEEEEecC
Confidence 9999999999999999 99986 24 78899999999999874
No 3
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=99.95 E-value=3.2e-28 Score=192.71 Aligned_cols=109 Identities=18% Similarity=0.325 Sum_probs=103.1
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 025721 96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 175 (249)
Q Consensus 96 MkVtve~le~~ki~LtVeVp~eevq~~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~Eai~elI~ 175 (249)
|+++++++++++++|+|+||+++++++++++|++++++++ |||||| | |||+++|+++||+ .|++++++++|+
T Consensus 1 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~vi~k~yG~-~v~~ea~~~~i~ 72 (109)
T 2nsc_A 1 MEVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRVE-IPGFRK--G----RIPKNVLKMKLGE-EFQEYTLDFLMD 72 (109)
T ss_dssp CEEEEEEEETTEEEEEEECCHHHHHHHHHHHHHHHHTTCC-CTTSCT--T----CCCHHHHHHHHGG-GHHHHHHHHHHT
T ss_pred CceEEEEcCCCEEEEEEEECHHHHHHHHHHHHHHHhccCC-CCCcCC--C----CCCHHHHHHHHhH-HHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 999999 9 9999999999997 599999999999
Q ss_pred HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 025721 176 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK 223 (249)
Q Consensus 176 ~~~~eAlkee~L~pvg~~P~i~~~~eeL~~~f~~g~~f~Fta~veV~~ 223 (249)
+ |.+|+++++| ++ +|.++. ..++ |++|+|+++|+|++
T Consensus 73 ~-~~~ai~e~~l--~~-~P~i~~------~~~~-~~~~~f~~~~ev~P 109 (109)
T 2nsc_A 73 L-IPDTLKDRKL--IL-SPIVTE------RELK-DVTARVVVEVHEEP 109 (109)
T ss_dssp T-HHHHTTTSCC--SS-CCCCCC------CCCC-CCCCCCCCCCCCCC
T ss_pred H-HHHHHHHcCc--CC-CCcccc------cccc-CCCEEEEEEEEecC
Confidence 9 9999999999 99 998862 4577 99999999999874
No 4
>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A
Probab=99.93 E-value=4.1e-25 Score=207.71 Aligned_cols=131 Identities=21% Similarity=0.340 Sum_probs=117.2
Q ss_pred CcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHH
Q 025721 95 DAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIV 174 (249)
Q Consensus 95 ~MkVtve~le~~ki~LtVeVp~eevq~~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~Eai~elI 174 (249)
.|+++++++++++++|+|+||+++++++++++|++++++++ |||||| | |||++||+++||+ .|++++++++|
T Consensus 3 ~M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~~i~k~yG~-~v~~ea~~~~~ 74 (392)
T 1t11_A 3 HMQVTVETLEGLQRRLNITVPAANIEDAVAAELRNIAKNRR-FDGFRK--G----KVPMKMVAKMYGK-AVRQDVLGEVM 74 (392)
T ss_dssp CCEEEEEECSTTEEEEEEEECHHHHHHHHHHHHHHHHTTCC-CTTSCS--S----CCCHHHHHHHHHH-HHHHHHHHHHH
T ss_pred cceEEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhccCC-CCCCCC--C----CCCHHHHHHHHhH-HHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999 999999 9 9999999999996 69999999999
Q ss_pred HHHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec------CCcccccccccCCCCCc
Q 025721 175 RSTLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK------SEVEESETETSSSSSSD 240 (249)
Q Consensus 175 ~~~~~eAlkee~L~pvg~~P~i~~~~eeL~~~f~~g~~f~Fta~veV~~------~E~~e~~~~~~~~~~~~ 240 (249)
+.+|.+|+++++|+|++ +|.++. ..+++|++|+|+++|+|+| +.+.+.+....+.++.|
T Consensus 75 ~~~~~~ai~e~~l~~~~-~P~i~~------~~~~~~~~~~f~~~~ev~Pev~l~~y~~l~v~~~~~~Vtde~ 139 (392)
T 1t11_A 75 QRHFIEAIVKEKINPAG-APTFAP------VEIGEGKDLVFTATFEVYPEVELKGLENIAVEKPAAEVTDAD 139 (392)
T ss_dssp HHHHHHHHHHTTCCBSS-CCEEEE------EECCTTSCEEEEEEEEBCCCCCCTTCTTCEEESSCC---CTH
T ss_pred HHHHHHHHHHcCCCcCC-CCCccc------cccCCCCCEEEEEEecCCCceecCCCCceEEEeCCCCcCHHH
Confidence 99999999999999999 999862 3578899999999999973 46666666666666654
No 5
>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5
Probab=99.91 E-value=7.7e-25 Score=207.95 Aligned_cols=129 Identities=24% Similarity=0.367 Sum_probs=116.9
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 025721 96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 175 (249)
Q Consensus 96 MkVtve~le~~ki~LtVeVp~eevq~~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~Eai~elI~ 175 (249)
|+++++++++++++|+|+||+++++.+++++|++++++++ |||||| | |||++||+++||+ .|++++++++|+
T Consensus 1 M~v~~e~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~k~~~-ipGFRk--G----KvP~~vi~~~yG~-~v~~ea~~~~~~ 72 (432)
T 1w26_A 1 MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVR-IDGFRK--G----KVPMNIVAQRYGA-SVRQDVLGDLMS 72 (432)
T ss_dssp CEEECCBCSTTEEEEEEEECHHHHHHHHHHHHHHHHHHTT-CGGGCC--S----SSCHHHHHHHHCT-TTHHHHHHHHHH
T ss_pred CceEEEEcCCcEEEEEEEEcHHHHHHHHHHHHHHHhhhCC-CCCcCC--C----CCCHHHHHHHHhH-HHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 999999 9 9999999999997 699999999999
Q ss_pred HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec------CCcccccccccCCCCC
Q 025721 176 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK------SEVEESETETSSSSSS 239 (249)
Q Consensus 176 ~~~~eAlkee~L~pvg~~P~i~~~~eeL~~~f~~g~~f~Fta~veV~~------~E~~e~~~~~~~~~~~ 239 (249)
.+|.+|+++++|+|++ +|.++. ..+++|++|+|+++|+|+| +.+.+.+....+.++.
T Consensus 73 ~~~~~ai~e~~l~~~~-~P~i~~------~~~~~~~~~~f~~~~~v~Pev~l~~y~~l~v~~~~~eVtde 135 (432)
T 1w26_A 73 RNFIDAIIKEKINPAG-APTYVP------GEYKLGEDFTYSVEFEVYPEVELQGLEAIEVEKPIVEVTDA 135 (432)
T ss_dssp HHHHHHHHHSCCCEEE-EEEEEE------CCCCTTSCEEEEEEEEECCCCCCCCTTTCBCCEEECCCCHH
T ss_pred HHHHHHHHhcCCCCCC-CCCccc------cccCCCCcEEEEEEeccCCCeecCCCCceEEEecCCCcCHH
Confidence 9999999999999999 999862 3578899999999999974 4566666666665554
No 6
>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A
Probab=99.81 E-value=1.2e-20 Score=179.33 Aligned_cols=109 Identities=17% Similarity=0.311 Sum_probs=95.7
Q ss_pred cEEEEEecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcCCCCCCCCCCcHHHHHHHhCHHHHHHHHHHHHHH
Q 025721 96 AKIVVESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRREKGGKTTKVPRDFLIQILGEERVTKFVVQEIVR 175 (249)
Q Consensus 96 MkVtve~le~~ki~LtVeVp~eevq~~~dkalkklaKkakpIPGFRK~kGgk~~KVP~~VIek~yG~e~I~~Eai~elI~ 175 (249)
|++++++.+++.+.|+|+||+++++.+++++|++++++++ |||||| | |||++||+++||+ .++.++++.+++
T Consensus 1 M~v~~~~~e~~~~~l~i~v~~~~~~~~~~~~~k~~~k~v~-ipGFRk--G----KvP~~vi~k~yG~-~v~~ev~~~l~~ 72 (433)
T 3gty_X 1 MEVKELERDKNRVVLEYVFGAEEIAQAEDKAVRYLNQRVE-IPGFRK--G----RIPKNVLKMKLGE-EFQEYTLDFLMD 72 (433)
T ss_dssp CEEEEEEEETTEEEEEEECCTTHHHHHHHHHHHHHHTSCC-CCC--C--C----CCCSHHHHTTSTT-HHHHHHHHHHHT
T ss_pred CceEEEEcCCCEEEEEEEEcHHHHHHHHHHHHHHHHHhCC-CCCCCC--C----CCcHHHHHHHhhH-HHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999 999999 9 9999999999999 599999999999
Q ss_pred HHHHHHHHHcCCccCCCCceeehhhhhhhhcccCCCcEEEEEEEEeec
Q 025721 176 STLTDYTKKEGLNVKDKKVTTTQKAEELRKSFYPGNEFGFSAVLELEK 223 (249)
Q Consensus 176 ~~~~eAlkee~L~pvg~~P~i~~~~eeL~~~f~~g~~f~Fta~veV~~ 223 (249)
.++ .++.++ +|++ +|.++. ..+ .|++|+|+++|+|+|
T Consensus 73 ~~~-~~~~~e--~~~~-~P~i~~------~~~-~~~~~~f~~~vev~P 109 (433)
T 3gty_X 73 LIP-DTLKDR--KLIL-SPIVTE------REL-KDVTARVVVEVHEEP 109 (433)
T ss_dssp TST-TTSSSS--CBSS-CCEEEE------EEE-CSSCEEEEEEEEBCC
T ss_pred HHH-HHHHhc--CCCC-CCCcCc------ccc-cCCCEEEEEEEEecC
Confidence 987 455555 7899 998862 234 366899999999973
No 7
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=41.39 E-value=28 Score=26.11 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=27.9
Q ss_pred ccccccccCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHH
Q 025721 87 PEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVL 127 (249)
Q Consensus 87 ~~~~s~~~~MkVtve~le~~ki~LtVeVp~eevq~~~dkal 127 (249)
.+|.+....|+|+++.+.+....+.|+++..++=..+.+.+
T Consensus 11 ~~~~~~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I 51 (98)
T 4a20_A 11 DDDKMDNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHL 51 (98)
T ss_dssp -------CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHH
T ss_pred CcccCCCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHH
Confidence 45555668899999999999989999988877656555555
No 8
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=23.56 E-value=1.1e+02 Score=22.43 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=32.8
Q ss_pred EecCCceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCC
Q 025721 101 ESQDEDKIQVRVDLTGDATQRVFDKVLTNLARSAPPI 137 (249)
Q Consensus 101 e~le~~ki~LtVeVp~eevq~~~dkalkklaKkakpI 137 (249)
-.++++..+++|+=-++++.+.+.+....++|..+ |
T Consensus 35 ytldgndleiritgvpeqvrkelakeaerlakefn-i 70 (85)
T 2kl8_A 35 YTLDGNDLEIRITGVPEQVRKELAKEAERLAKEFN-I 70 (85)
T ss_dssp EEECSSCEEEEEESCCHHHHHHHHHHHHHHHHHTC-C
T ss_pred EEecCCeeEEEEecChHHHHHHHHHHHHHHHHhcC-e
Confidence 46899999999999999999999999999999887 5
No 9
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=21.45 E-value=1.2e+02 Score=22.13 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=26.4
Q ss_pred eecCCCccccCCccccccccCcEEEEEecCCceEEEEEEeCHHHHHHHHHHHHH
Q 025721 75 AVDSGVEVSITEPEDLITVKDAKIVVESQDEDKIQVRVDLTGDATQRVFDKVLT 128 (249)
Q Consensus 75 ~~~sg~~~s~~~~~~~s~~~~MkVtve~le~~ki~LtVeVp~eevq~~~dkalk 128 (249)
.-.||..++.++. ..|+|.|....+ + +.++|+...+=..+.+.+.
T Consensus 3 ~~~~~~~~~~~~~------~~m~I~Vk~~~g-~--~~l~v~~~~TV~~LK~~I~ 47 (106)
T 1wx7_A 3 SGSSGSPAPVQDP------HLIKVTVKTPKD-K--EDFSVTDTCTIQQLKEEIS 47 (106)
T ss_dssp CCCCCCCSCCCCS------SEEEEEEECSSC-E--EEEEEETTCCHHHHHHHHH
T ss_pred CCCCCCCCCCCCC------ceEEEEEEeCCC-c--EEEEECCCCcHHHHHHHHH
Confidence 3457777765543 348899988776 3 3566665544333333333
No 10
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=21.23 E-value=94 Score=23.86 Aligned_cols=33 Identities=12% Similarity=0.204 Sum_probs=25.3
Q ss_pred CcEEEEEecCCceEEEEEEeCHHHHHHHHHHHH
Q 025721 95 DAKIVVESQDEDKIQVRVDLTGDATQRVFDKVL 127 (249)
Q Consensus 95 ~MkVtve~le~~ki~LtVeVp~eevq~~~dkal 127 (249)
.|+|+++........++++|.+.++=..+.+.+
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I 56 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMV 56 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHH
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHH
Confidence 499999999998899999998766544444433
No 11
>3kg0_A Snoab; polyketide, anthracycline, oxygenase, cofactor-independent, oxidoreductase; 1.70A {Streptomyces nogalater} PDB: 3kg1_A 3kng_A
Probab=20.45 E-value=50 Score=25.61 Aligned_cols=36 Identities=28% Similarity=0.380 Sum_probs=28.2
Q ss_pred CceEEEEEEeCHHHHHHHHHHHHHHHhhcCCCCCCCcC
Q 025721 105 EDKIQVRVDLTGDATQRVFDKVLTNLARSAPPIPGFRR 142 (249)
Q Consensus 105 ~~ki~LtVeVp~eevq~~~dkalkklaKkakpIPGFRK 142 (249)
-..+..+++|.++ +..|.+++.++...+.-.|||+-
T Consensus 23 mi~via~~~V~pg--~~~f~~~~~~~~~~~~~~pGfi~ 58 (128)
T 3kg0_A 23 EVTFVNRFTVHGA--PAEFESVFARTAAFFARQPGFVR 58 (128)
T ss_dssp CEEEEEEEEECSC--HHHHHHHHHHHHHHHHTSTTEEE
T ss_pred cEEEEEEEEeCCC--HHHHHHHHHHHHHHHhcCCCccE
Confidence 3456667888887 88999999998887644999975
Done!