RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 025724
(249 letters)
>d1nuwa_ e.7.1.1 (A:) Fructose-1,6-bisphosphatase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 328
Score = 249 bits (637), Expect = 4e-83
Identities = 109/196 (55%), Positives = 143/196 (72%), Gaps = 1/196 (0%)
Query: 10 TDLMTITRFVLNEQSKHPESRGDFSILLSHIVLGCKFVCSAVNKAGLAKLIGLAGETNVQ 69
T+++T+TRFV+ E+ + G+ + LL+ + K + +AV KAG+A L G+AG TNV
Sbjct: 1 TNIVTLTRFVM-EEGRKARGTGEMTQLLNSLCTAVKAISTAVRKAGIAHLYGIAGSTNVT 59
Query: 70 GEEQKKLDVLSNDVFVKALISSGRTCILVSEEDEEAIFVEPSKRGRYCVVFDPLDGSSNI 129
G++ KKLDVLSND+ + L SS TC+LVSEED+ AI VEP KRG+Y V FDPLDGSSNI
Sbjct: 60 GDQVKKLDVLSNDLVINVLKSSFATCVLVSEEDKNAIIVEPEKRGKYVVCFDPLDGSSNI 119
Query: 130 DCGVSIGTIFGIYMMKDSHEPTLDDVLQPGNNMLAAGYCMYGSSCTLVLSTGSGVNGFTL 189
DC VSIGTIFGIY + EP+ D LQPG N++AAGY +YGS+ LVL+ +GVN F L
Sbjct: 120 DCLVSIGTIFGIYRKNSTDEPSEKDALQPGRNLVAAGYALYGSATMLVLAMVNGVNCFML 179
Query: 190 DPSLGEFILTHPDIKV 205
DP++GEFIL D+K+
Sbjct: 180 DPAIGEFILVDRDVKI 195
>d1d9qa_ e.7.1.1 (A:) Fructose-1,6-bisphosphatase {Garden pea (Pisum
sativum) [TaxId: 3888]}
Length = 340
Score = 232 bits (594), Expect = 2e-76
Identities = 97/211 (45%), Positives = 132/211 (62%), Gaps = 18/211 (8%)
Query: 12 LMTITRFVLNEQSKHPESRGDFSILLSHIVLGCKFVCSAVNKAGLAKLIGLAGETNVQGE 71
++T+T ++L ++ K + +I+LS I + CK + S V +A ++ L G G N+QGE
Sbjct: 1 IITLTSWLLQQEQKGIID-AELTIVLSSISMACKQIASLVQRANISNLTGTQGAVNIQGE 59
Query: 72 EQKKLDVLSNDVFVKALISSGRTCILVSEEDEEAIFVEPSKRGRYCVVFDPLDGSSNIDC 131
+QKKLDV+SN+VF L SSGRT I+ SEE++ + VE S G Y VVFDPLDGSSN+D
Sbjct: 60 DQKKLDVISNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNLDA 119
Query: 132 GVSIGTIFGIYMMKDSHEP-----------------TLDDVLQPGNNMLAAGYCMYGSSC 174
VS G+IFGIY D P + +V QPG+N+LAAGYCMY SS
Sbjct: 120 AVSTGSIFGIYSPNDECLPDFGDDSDDNTLGTEEQRCIVNVCQPGSNLLAAGYCMYSSSV 179
Query: 175 TLVLSTGSGVNGFTLDPSLGEFILTHPDIKV 205
VL+ G GV FTLDP GEF+LT ++++
Sbjct: 180 IFVLTIGKGVFVFTLDPLYGEFVLTQENLQI 210
>d2g5fa1 d.161.1.1 (A:15-449) Salicylate synthase MbtI
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 435
Score = 30.7 bits (68), Expect = 0.16
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 109 EPSKRGRYCVVFDPLDGSSNIDCGVSIGTIF 139
+ RG Y L +D +++ +
Sbjct: 364 DECPRGLYSGAVVMLSADGGLDAALTLRAAY 394
>d2vzsa4 b.18.1.5 (A:42-225) Exochitosanase CsxA {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 184
Score = 29.3 bits (65), Expect = 0.33
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 110 PSKRGRYCVVFDPLDGSSNIDC-GVSIGTIFGIYMMKDSHEPTLDDVLQPGNNMLA 164
R + F + +++ G + T + H+ + + G N +A
Sbjct: 89 DDTSSRTYLDFSGVLSKADVWVNGTKVATKDQVNGAYTRHDLDITAQVHTGVNSVA 144
>d1k0ga_ d.161.1.1 (A:) P-aminobenzoate synthase component I
{Escherichia coli [TaxId: 562]}
Length = 453
Score = 29.5 bits (65), Expect = 0.35
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 109 EPSKRGRYCVVFDPLDGSSNIDCGVSIGTIF 139
EP +R +C L N+D ++I T+
Sbjct: 383 EPQRRNAWCGSIGYLSFCGNMDTSITIRTLT 413
>d1qdla_ d.161.1.1 (A:) Anthranilate synthase
aminodeoxyisochorismate synthase/lyase subunit, TrpE
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 422
Score = 29.1 bits (64), Expect = 0.52
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 109 EPSKRGRYCVVFDPLDGSSNIDCGVSIGTIF 139
E KRG Y + N + ++I T F
Sbjct: 351 EEYKRGPYAGAVGFISADGNAEFAIAIRTAF 381
>d1i7qa_ d.161.1.1 (A:) Anthranilate synthase
aminodeoxyisochorismate synthase/lyase subunit, TrpE
{Serratia marcescens [TaxId: 615]}
Length = 517
Score = 28.8 bits (63), Expect = 0.65
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 109 EPSKRGRYCVVFDPLDGSSNIDCGVSIGTIF 139
++RG Y N+D + I + +
Sbjct: 439 RSTRRGSYGGRVGYFTAVRNLDTCIVIRSAY 469
>d1inpa_ e.7.1.1 (A:) Inositol polyphosphate 1-phosphatase {Cow (Bos
taurus), brain [TaxId: 9913]}
Length = 400
Score = 27.3 bits (59), Expect = 1.9
Identities = 15/131 (11%), Positives = 37/131 (28%), Gaps = 16/131 (12%)
Query: 77 DVLSNDVFVKALISSGRTCILVSEEDEEAIFVEPSKRGRYCVVFDPLDGSSNI-----DC 131
VL+ + ++ + + + + DP+D + D
Sbjct: 109 KVLNGNKLASEALAKVVHQDVFFSDPALDSVEINIPQDILGIWVDPIDSTYQYIKGSADI 168
Query: 132 GVSIG----------TIFGIYMMKDSHEPTLDDVLQPGNNMLAAGYCMYGSSCTLVLSTG 181
+ G + G+Y ++ P + + QP + G + G
Sbjct: 169 TPNQGIFPSGLQCVTVLIGVYDIQT-GVPLMGVINQPFVSQDLHTRRWKGQCYWGLSYLG 227
Query: 182 SGVNGFTLDPS 192
+ ++ S
Sbjct: 228 TNIHSLLPPVS 238
>d2fn0a1 d.161.1.1 (A:2-434) Salicylate synthetase Irp9 {Yersinia
enterocolitica [TaxId: 630]}
Length = 433
Score = 25.9 bits (56), Expect = 6.1
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 109 EPSKRGRYCVVFDPLDGSSNIDCGVSIGTIF 139
E + R Y LD + D + + ++F
Sbjct: 364 EKTPRELYSGAILLLD-DTRFDAALVLRSVF 393
>d1k5db_ b.55.1.3 (B:) Ran-binding protein 1, Ranbp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 146
Score = 24.9 bits (54), Expect = 7.5
Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 10/75 (13%)
Query: 100 EEDEEAIFVEPSKRGRYCVVFDPLDGSSNIDCGVSIGTIFGIYMMKDSHEPTL----DDV 155
EEDEE +F R + D + G G + + K+ L D
Sbjct: 21 EEDEEELF---KMRAKLFRFASENDLPEWKERGT--GDVK-LLKHKEKGAIRLLMRRDKT 74
Query: 156 LQPGNNMLAAGYCMY 170
L+ N
Sbjct: 75 LKICANHYITPMMEL 89
>d3bzna1 d.161.1.1 (A:2-429) Menaquinone-specific isochorismate
synthase MenF {Escherichia coli [TaxId: 562]}
Length = 428
Score = 25.5 bits (55), Expect = 8.2
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 109 EPSKRGRYCVVFDPLDGSSNIDCGVSIGTIF 139
EP R Y L + + VS+ +
Sbjct: 360 EPFTREWYAGSAGYLSLQQS-EFCVSLRSAK 389
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId:
10090]}
Length = 107
Score = 24.3 bits (52), Expect = 9.2
Identities = 11/86 (12%), Positives = 28/86 (32%), Gaps = 1/86 (1%)
Query: 79 LSNDVFVKALISSGRTCILVSEEDEEAIFVE-PSKRGRYCVVFDPLDGSSNIDCGVSIGT 137
S D + T + + D+ +I + P + +C + + + + T
Sbjct: 16 DSRDKPKLYRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDAET 75
Query: 138 IFGIYMMKDSHEPTLDDVLQPGNNML 163
+ ++ LQ G + +
Sbjct: 76 YVDGQRISETTMLQSGMRLQFGTSHV 101
>d1lj8a4 c.2.1.6 (A:1-286) Mannitol 2-dehydrogenase {Pseudomonas
fluorescens [TaxId: 294]}
Length = 286
Score = 25.0 bits (54), Expect = 9.6
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 154 DVLQPGNNMLAAGYCMYGSSCTLVLSTGSGVNGFTLDPSLGEFILTHPDIK 204
D+L ++ A + +V T + G+ +D S GEF+ P I+
Sbjct: 104 DMLLAEDSAQALIDKLASPEIRIVSLTITE-GGYCIDDSNGEFMAHLPQIQ 153
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.404
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 903,097
Number of extensions: 40916
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 14
Length of query: 249
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,268,006
Effective search space: 210488996
Effective search space used: 210488996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.4 bits)