BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025725
         (249 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5M856|SPC25_RAT Kinetochore protein Spc25 OS=Rattus norvegicus GN=Spc25 PE=2 SV=1
          Length = 226

 Score = 31.6 bits (70), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 33/59 (55%)

Query: 126 KLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQL 184
           KL+   ++ + + +A V+  G E+  LT  + DL +E  +   + + A +  EERL++L
Sbjct: 75  KLIQEKKDNVLKMIAEVKGKGQEVEVLTANIQDLKEEYARKKETISTANKANEERLKRL 133


>sp|P32399|YHGE_BACSU Uncharacterized protein YhgE OS=Bacillus subtilis (strain 168)
           GN=yhgE PE=4 SV=2
          Length = 775

 Score = 31.2 bits (69), Expect = 7.4,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 116 ALKGAAESLEKLMDVTRE------ELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRS 169
            L  A+   +K+ D T++      +L E +A ++ S   ISD T +L+D   ++T G++S
Sbjct: 179 GLSDASSGAKKIDDGTKDAKNGSAQLKENLAKLKESTATISDKTAQLADGAAQVTSGIQS 238


>sp|P10587|MYH11_CHICK Myosin-11 OS=Gallus gallus GN=MYH11 PE=1 SV=4
          Length = 1979

 Score = 30.8 bits (68), Expect = 9.9,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 49/119 (41%), Gaps = 4/119 (3%)

Query: 119  GAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAE 178
             AAE   K  D+ +EE+ E +A+       + D    L     ++ + +      +    
Sbjct: 1703 AAAERARKQADLEKEEMAEELASANSGRTSLQDEKRRLEARIAQLEEELDEEHSNIETMS 1762

Query: 179  ERLR----QLTNMNPSVSSQEVVSQRIGPTSPQLARTARDIREGIVQGRAILRMFFTLT 233
            +R+R    Q   +N  ++++   +Q+      QL R  +++R  + +    ++  F  T
Sbjct: 1763 DRMRKAVQQAEQLNNELATERATAQKNENARQQLERQNKELRSKLQEMEGAVKSKFKST 1821


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.128    0.357 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,442,264
Number of Sequences: 539616
Number of extensions: 2590933
Number of successful extensions: 12340
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 12292
Number of HSP's gapped (non-prelim): 71
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)