Query 025725
Match_columns 249
No_of_seqs 67 out of 69
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 08:51:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025725.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025725hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06103 DUF948: Bacterial pro 98.2 2.6E-05 5.7E-10 58.8 10.8 70 95-164 2-71 (90)
2 PF06103 DUF948: Bacterial pro 95.7 0.32 6.9E-06 36.7 11.0 83 89-175 3-85 (90)
3 COG4768 Uncharacterized protei 95.4 0.34 7.4E-06 41.6 11.5 92 91-189 3-104 (139)
4 PRK10337 sensor protein QseC; 78.3 52 0.0011 29.8 11.9 57 116-172 181-239 (449)
5 PF05659 RPW8: Arabidopsis bro 76.0 27 0.00058 29.5 8.9 46 123-169 35-81 (147)
6 PRK15048 methyl-accepting chem 75.6 57 0.0012 31.4 12.1 51 134-184 260-310 (553)
7 PRK10755 sensor protein BasS/P 67.7 66 0.0014 28.3 9.8 67 103-169 68-136 (356)
8 PF06305 DUF1049: Protein of u 65.8 44 0.00096 23.5 7.0 56 78-136 10-65 (68)
9 cd00193 t_SNARE Soluble NSF (N 62.7 27 0.00059 23.1 5.1 48 137-184 13-60 (60)
10 PRK09793 methyl-accepting prot 62.0 1.6E+02 0.0034 28.6 14.9 49 135-183 259-307 (533)
11 COG0811 TolQ Biopolymer transp 59.9 39 0.00085 29.8 7.0 27 107-133 174-200 (216)
12 PRK04654 sec-independent trans 58.7 99 0.0021 28.5 9.4 23 116-138 31-53 (214)
13 TIGR01386 cztS_silS_copS heavy 58.5 1.4E+02 0.0029 26.7 13.9 36 147-182 218-253 (457)
14 PRK00708 sec-independent trans 56.5 1.4E+02 0.0029 27.4 9.9 24 115-138 30-53 (209)
15 PRK10600 nitrate/nitrite senso 54.4 1.4E+02 0.0031 28.7 10.2 22 150-171 188-209 (569)
16 PLN03094 Substrate binding sub 52.8 2.2E+02 0.0047 27.9 11.2 62 122-186 253-314 (370)
17 PRK10815 sensor protein PhoQ; 52.1 1.3E+02 0.0029 28.8 9.6 19 147-165 243-261 (485)
18 PF05529 Bap31: B-cell recepto 50.9 1.5E+02 0.0033 25.1 9.8 71 108-178 114-185 (192)
19 PF14584 DUF4446: Protein of u 46.0 1.3E+02 0.0027 25.8 7.6 22 107-128 15-36 (151)
20 COG2165 PulG Type II secretory 42.1 93 0.002 23.4 5.7 59 87-148 8-66 (149)
21 PRK10935 nitrate/nitrite senso 41.7 2.9E+02 0.0063 25.9 9.9 16 148-163 207-222 (565)
22 PRK09470 cpxA two-component se 40.6 2.7E+02 0.006 25.0 9.8 31 145-175 218-248 (461)
23 PF06009 Laminin_II: Laminin D 40.2 9.4 0.0002 31.3 0.0 61 163-225 43-105 (138)
24 PF11221 Med21: Subunit 21 of 39.9 1.7E+02 0.0037 24.3 7.4 63 119-185 80-142 (144)
25 PF11887 DUF3407: Protein of u 39.7 1.8E+02 0.0038 26.6 8.0 21 117-137 33-53 (267)
26 PF03818 MadM: Malonate/sodium 38.8 35 0.00076 25.9 2.9 24 223-246 10-33 (60)
27 PRK10983 putative inner membra 36.5 3.6E+02 0.0079 25.6 9.8 43 105-147 74-121 (368)
28 PF00672 HAMP: HAMP domain; I 36.5 6.7 0.00014 26.9 -1.2 46 117-164 20-69 (70)
29 PRK11107 hybrid sensory histid 34.2 5E+02 0.011 26.1 11.0 17 147-163 231-247 (919)
30 PF05739 SNARE: SNARE domain; 33.2 1.6E+02 0.0035 20.2 5.5 51 134-184 8-58 (63)
31 PF00804 Syntaxin: Syntaxin; 30.3 82 0.0018 22.8 3.6 31 150-180 41-71 (103)
32 PRK10414 biopolymer transport 29.4 1.7E+02 0.0037 26.7 6.2 27 106-132 184-210 (244)
33 TIGR02797 exbB tonB-system ene 29.1 1.9E+02 0.004 25.4 6.2 23 106-128 173-195 (211)
34 PF10824 DUF2580: Protein of u 29.0 2.2E+02 0.0048 20.4 8.1 66 116-181 11-94 (100)
35 smart00397 t_SNARE Helical reg 28.4 1.8E+02 0.004 19.3 5.1 44 140-183 22-65 (66)
36 PF07465 PsaM: Photosystem I p 27.8 78 0.0017 20.9 2.7 15 104-118 8-22 (29)
37 PF05633 DUF793: Protein of un 27.5 1.7E+02 0.0036 29.1 6.1 70 87-156 243-334 (389)
38 PF05802 EspB: Enterobacterial 27.4 2.3E+02 0.005 27.6 6.9 59 117-175 152-210 (317)
39 PRK00708 sec-independent trans 27.2 4.9E+02 0.011 23.8 9.1 21 110-130 32-52 (209)
40 TIGR03785 marine_sort_HK prote 27.1 7E+02 0.015 25.6 16.6 32 146-177 461-492 (703)
41 PRK10801 colicin uptake protei 26.3 2.9E+02 0.0062 24.8 7.0 27 106-132 178-204 (227)
42 PF14341 PilX_N: PilX N-termin 26.3 1.1E+02 0.0023 21.5 3.4 22 161-182 30-51 (51)
43 TIGR00996 Mtu_fam_mce virulenc 25.9 3.9E+02 0.0084 23.7 7.7 22 116-137 168-189 (291)
44 CHL00190 psaM photosystem I su 25.9 85 0.0018 20.9 2.7 15 104-118 9-23 (30)
45 TIGR03053 PS_I_psaM photosyste 25.6 87 0.0019 20.6 2.7 16 103-118 7-22 (29)
46 TIGR00996 Mtu_fam_mce virulenc 25.4 4.8E+02 0.01 23.1 10.9 28 117-144 151-178 (291)
47 PRK10807 paraquat-inducible pr 25.3 2.7E+02 0.0058 28.2 7.3 107 117-223 415-524 (547)
48 TIGR02796 tolQ TolQ protein. T 24.5 2.5E+02 0.0054 24.8 6.2 26 106-131 177-202 (215)
49 COG4768 Uncharacterized protei 24.2 4.9E+02 0.011 22.8 11.5 95 89-183 8-116 (139)
50 PRK01770 sec-independent trans 24.2 5.1E+02 0.011 23.0 10.3 21 116-136 31-51 (171)
51 PRK09835 sensor kinase CusS; P 23.4 5.7E+02 0.012 23.2 14.5 36 147-182 239-274 (482)
52 PRK11360 sensory histidine kin 23.2 4.7E+02 0.01 23.8 7.8 19 147-165 241-259 (607)
53 PF11812 DUF3333: Domain of un 22.5 1.1E+02 0.0024 26.3 3.6 30 83-112 9-38 (155)
54 PRK09470 cpxA two-component se 22.3 5.6E+02 0.012 23.0 8.1 8 154-161 220-227 (461)
55 PF12732 YtxH: YtxH-like prote 22.2 3.2E+02 0.007 20.0 6.3 19 90-108 1-19 (74)
56 PRK11637 AmiB activator; Provi 22.1 7E+02 0.015 23.8 11.0 6 147-152 89-94 (428)
57 PRK10506 hypothetical protein; 22.0 3.1E+02 0.0068 22.9 6.1 47 86-134 8-60 (162)
58 PRK10549 signal transduction h 21.5 6.1E+02 0.013 23.0 10.2 23 146-168 216-238 (466)
59 PRK04654 sec-independent trans 21.4 6.6E+02 0.014 23.3 9.9 16 149-164 70-85 (214)
60 PF05478 Prominin: Prominin; 21.1 9.9E+02 0.021 25.2 11.1 61 111-171 158-219 (806)
61 PF02203 TarH: Tar ligand bind 20.9 2E+02 0.0044 22.6 4.5 37 99-138 15-51 (171)
62 PRK11878 psaM photosystem I re 20.9 1.2E+02 0.0026 20.7 2.7 15 104-118 12-26 (34)
63 PRK10604 sensor protein RstB; 20.8 6.8E+02 0.015 23.2 9.3 32 146-177 188-219 (433)
64 COG0840 Tar Methyl-accepting c 20.8 6.3E+02 0.014 22.8 8.3 44 114-157 257-302 (408)
65 COG1463 Ttg2C ABC-type transpo 20.6 4.2E+02 0.009 24.9 7.2 32 149-180 185-216 (359)
66 PRK10600 nitrate/nitrite senso 20.6 7.8E+02 0.017 23.8 9.2 37 139-175 184-220 (569)
67 PRK10574 putative major pilin 20.5 3.3E+02 0.0072 23.0 5.9 24 106-129 22-45 (146)
68 PF09177 Syntaxin-6_N: Syntaxi 20.1 4.1E+02 0.0088 20.4 6.2 59 116-179 9-67 (97)
No 1
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=98.21 E-value=2.6e-05 Score=58.84 Aligned_cols=70 Identities=16% Similarity=0.176 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHhhhcchhhhhhHHhhhhhHHHH
Q 025725 95 IACAAAVSATWLFFSAIPTLLALKGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEIT 164 (249)
Q Consensus 95 ~a~~vavs~t~ll~~aIPtllAl~RAA~SlekL~Dt~~eELP~TLaaiRLSGlEIsDLT~eLs~L~qei~ 164 (249)
+++++|+++..++++.++++..+++..+++++..+.+.+|+.+.+..+.-.-.+.+++++|+.+-.+++.
T Consensus 2 a~lI~Aiaf~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~ 71 (90)
T PF06103_consen 2 AGLIAAIAFAVLVIFLIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVD 71 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5678899999999999999999999999999999999999999998777777777777777665444333
No 2
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=95.67 E-value=0.32 Score=36.71 Aligned_cols=83 Identities=10% Similarity=0.080 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHhhhcchhhhhhHHhhhhhHHHHHhhh
Q 025725 89 ILVLNVIACAAAVSATWLFFSAIPTLLALKGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVR 168 (249)
Q Consensus 89 l~~L~v~a~~vavs~t~ll~~aIPtllAl~RAA~SlekL~Dt~~eELP~TLaaiRLSGlEIsDLT~eLs~L~qei~~GVr 168 (249)
.++.++++.++++.+.-.+.-.-+++.++.+..+.+++=.|.+.+|..+++...+-.--++.+-+++++.+.+ .|+
T Consensus 3 ~lI~Aiaf~vLvi~l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~----~v~ 78 (90)
T PF06103_consen 3 GLIAAIAFAVLVIFLIKVLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFE----AVA 78 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHH
Confidence 4567777778888888888888999999999999999999999999999999998888888888888875444 444
Q ss_pred hhHHHHH
Q 025725 169 SSTKAVR 175 (249)
Q Consensus 169 ss~~~V~ 175 (249)
..++.|+
T Consensus 79 ~~g~~v~ 85 (90)
T PF06103_consen 79 DLGESVS 85 (90)
T ss_pred HHHHHHH
Confidence 4444443
No 3
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=95.43 E-value=0.34 Score=41.63 Aligned_cols=92 Identities=14% Similarity=0.195 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHhhhcchhhhhhHHhhhhhHHHH------
Q 025725 91 VLNVIACAAAVSATWLFFSAIPTLLALKGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEIT------ 164 (249)
Q Consensus 91 ~L~v~a~~vavs~t~ll~~aIPtllAl~RAA~SlekL~Dt~~eELP~TLaaiRLSGlEIsDLT~eLs~L~qei~------ 164 (249)
+|.+++.++|+++.+|++..|-++..+.++-++++|-++.+.-++-+++.. =.||+.-.+-|-+|+.
T Consensus 3 ilyIs~~iiAiAf~vL~I~li~tlkkv~~tldevakt~~~l~~qv~gi~~e-------T~~Ll~K~N~L~eDvq~Kv~tl 75 (139)
T COG4768 3 ILYISLAIIAIAFLVLVIYLIITLKKVSKTLDEVAKTLKGLTSQVDGITHE-------TEELLHKTNTLAEDVQGKVATL 75 (139)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhHHhH
Confidence 577889999999999999999999999999999999999999998887654 4555555555555544
Q ss_pred ----HhhhhhHHHHHHHHHHHhhhcCCCC
Q 025725 165 ----QGVRSSTKAVRIAEERLRQLTNMNP 189 (249)
Q Consensus 165 ----~GVrss~~~V~~ae~~lR~~~~~a~ 189 (249)
+.|+.-++.|+..-+..|+.++.++
T Consensus 76 d~vf~aV~dl~~SV~~ln~s~r~~~~~~t 104 (139)
T COG4768 76 DPVFDAVKDLGQSVSDLNQSVRHLATRAT 104 (139)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666667777777777766553
No 4
>PRK10337 sensor protein QseC; Provisional
Probab=78.31 E-value=52 Score=29.79 Aligned_cols=57 Identities=18% Similarity=0.152 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhHHHHhhh--cchhhhhhHHhhhhhHHHHHhhhhhHH
Q 025725 116 ALKGAAESLEKLMDVTREELPETMAAVRLS--GMEISDLTMELSDLGQEITQGVRSSTK 172 (249)
Q Consensus 116 Al~RAA~SlekL~Dt~~eELP~TLaaiRLS--GlEIsDLT~eLs~L~qei~~GVrss~~ 172 (249)
-++|.-+.+.++.+.+++.-++....+... .-||.++.+.+..+.+++.+-+..-.+
T Consensus 181 ~~~~~~~pl~~l~~~~~~~~~~~~~~~~~~~~~~Ei~~l~~~~n~~~~~l~~~~~~~~~ 239 (449)
T PRK10337 181 LLGRELAPLKKLALALRMRDPDSETPLNATGVPSEVRPLVEALNQLFARTHAMMVRERR 239 (449)
T ss_pred HHHhhhchHHHHHHHHHhhCcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655433332221111 467777777777777777665554333
No 5
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=75.98 E-value=27 Score=29.52 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhchhhHHHHhhhcchhhhh-hHHhhhhhHHHHHhhhh
Q 025725 123 SLEKLMDVTREELPETMAAVRLSGMEISDL-TMELSDLGQEITQGVRS 169 (249)
Q Consensus 123 SlekL~Dt~~eELP~TLaaiRLSGlEIsDL-T~eLs~L~qei~~GVrs 169 (249)
++++|-.|+ +.+-|+...|.-+|-|+.+- -.|+.+|.+.+.+|..=
T Consensus 35 ~l~~L~sTl-~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~L 81 (147)
T PF05659_consen 35 ILKRLESTL-ESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKEL 81 (147)
T ss_pred HHHHHHHHH-HHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 344444444 56778999999999999999 88888888888888653
No 6
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=75.61 E-value=57 Score=31.39 Aligned_cols=51 Identities=20% Similarity=0.233 Sum_probs=27.0
Q ss_pred hchhhHHHHhhhcchhhhhhHHhhhhhHHHHHhhhhhHHHHHHHHHHHhhh
Q 025725 134 ELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQL 184 (249)
Q Consensus 134 ELP~TLaaiRLSGlEIsDLT~eLs~L~qei~~GVrss~~~V~~ae~~lR~~ 184 (249)
.|-..+..++-+..+|++.++++++-++++..++..-...++..-..+.++
T Consensus 260 ~l~~~i~~i~~~s~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eei 310 (553)
T PRK15048 260 SLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQL 310 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556666666666666655555555555544444444443333
No 7
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=67.71 E-value=66 Score=28.29 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHh--hhcchhhhhhHHhhhhhHHHHHhhhh
Q 025725 103 ATWLFFSAIPTLLALKGAAESLEKLMDVTREELPETMAAVR--LSGMEISDLTMELSDLGQEITQGVRS 169 (249)
Q Consensus 103 ~t~ll~~aIPtllAl~RAA~SlekL~Dt~~eELP~TLaaiR--LSGlEIsDLT~eLs~L~qei~~GVrs 169 (249)
+.+++++.+-.++..++.-+-+++|.+.+.+.-.+-+.... -...|+.++++.+.+..+++.+..+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~n~~~~~l~~~~~~ 136 (356)
T PRK10755 68 LVMVSLTLLICFQAVRWITRPLAELQKELEARTADNLTPIAIHSSTLEIEAVTSALNQLVSRLTSTLDQ 136 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccCCccCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556777777777777777666553222221111 12356666666666666665554443
No 8
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=65.80 E-value=44 Score=23.52 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=34.3
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 025725 78 QLSQWNLTHRHILVLNVIACAAAVSATWLFFSAIPTLLALKGAAESLEKLMDVTREELP 136 (249)
Q Consensus 78 ~~~~wnl~~~~l~~L~v~a~~vavs~t~ll~~aIPtllAl~RAA~SlekL~Dt~~eELP 136 (249)
.+--|... -.+.++-++++++++.+ ..+...+.....++..++++|=.+.+.+|+.
T Consensus 10 ~~~~~~~~-~pl~l~il~~f~~G~ll--g~l~~~~~~~~~r~~~~~~~k~l~~le~e~~ 65 (68)
T PF06305_consen 10 NFLFGQFP-LPLGLLILIAFLLGALL--GWLLSLPSRLRLRRRIRRLRKELKKLEKELE 65 (68)
T ss_pred EEEeeecc-chHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334433 33444444444444444 4467788889999999998887777666653
No 9
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=62.75 E-value=27 Score=23.12 Aligned_cols=48 Identities=17% Similarity=0.269 Sum_probs=38.9
Q ss_pred hhHHHHhhhcchhhhhhHHhhhhhHHHHHhhhhhHHHHHHHHHHHhhh
Q 025725 137 ETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQL 184 (249)
Q Consensus 137 ~TLaaiRLSGlEIsDLT~eLs~L~qei~~GVrss~~~V~~ae~~lR~~ 184 (249)
.++..++=-+.+|+++..+=++...+|.+.|..+..-++.+...|+++
T Consensus 13 ~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 13 ASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445567777888888888888889999999999988888888877753
No 10
>PRK09793 methyl-accepting protein IV; Provisional
Probab=62.00 E-value=1.6e+02 Score=28.62 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=24.1
Q ss_pred chhhHHHHhhhcchhhhhhHHhhhhhHHHHHhhhhhHHHHHHHHHHHhh
Q 025725 135 LPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQ 183 (249)
Q Consensus 135 LP~TLaaiRLSGlEIsDLT~eLs~L~qei~~GVrss~~~V~~ae~~lR~ 183 (249)
|-.++..|+-+..++++.+.|++.-.+++.+++......+...-..+.+
T Consensus 259 L~~~i~~i~~~~~~~~~~~~eia~~~~~ls~~~e~qa~~~~~~~~s~~~ 307 (533)
T PRK09793 259 LRGTVSDVRKGSQEMHIGIAEIVAGNNDLSSRTEQQAASLAQTAASMEQ 307 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555554444444443333333
No 11
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=59.87 E-value=39 Score=29.77 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025725 107 FFSAIPTLLALKGAAESLEKLMDVTRE 133 (249)
Q Consensus 107 l~~aIPtllAl~RAA~SlekL~Dt~~e 133 (249)
+++|||++..-.+-.+..+++.+.+.+
T Consensus 174 L~vAIPAvi~yn~l~r~~~~~~~~~e~ 200 (216)
T COG0811 174 LFVAIPAVVAYNVLRRKVEELLAKLED 200 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999988888888777755543
No 12
>PRK04654 sec-independent translocase; Provisional
Probab=58.72 E-value=99 Score=28.52 Aligned_cols=23 Identities=13% Similarity=-0.021 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHhhchhh
Q 025725 116 ALKGAAESLEKLMDVTREELPET 138 (249)
Q Consensus 116 Al~RAA~SlekL~Dt~~eELP~T 138 (249)
.++|.-+.+.+.++.+.+|+-..
T Consensus 31 tlGk~irk~R~~~~~vk~El~~E 53 (214)
T PRK04654 31 FAGLWVRRARMQWDSVKQELERE 53 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555443
No 13
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=58.53 E-value=1.4e+02 Score=26.71 Aligned_cols=36 Identities=11% Similarity=0.182 Sum_probs=26.3
Q ss_pred chhhhhhHHhhhhhHHHHHhhhhhHHHHHHHHHHHh
Q 025725 147 MEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLR 182 (249)
Q Consensus 147 lEIsDLT~eLs~L~qei~~GVrss~~~V~~ae~~lR 182 (249)
-||.++...++.+.+++.+-++.-.+..+..-..||
T Consensus 218 dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~~h~l~ 253 (457)
T TIGR01386 218 AELRELAQSFNAMLGRLEDAFQRLSQFSADLAHELR 253 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 588888888888888888777776666665555554
No 14
>PRK00708 sec-independent translocase; Provisional
Probab=56.50 E-value=1.4e+02 Score=27.37 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhchhh
Q 025725 115 LALKGAAESLEKLMDVTREELPET 138 (249)
Q Consensus 115 lAl~RAA~SlekL~Dt~~eELP~T 138 (249)
..+++.-..+.+..+-+++++-+.
T Consensus 30 R~lGk~v~k~R~~a~e~r~~~~e~ 53 (209)
T PRK00708 30 RAFGKMTARMRKMAGEFRRQFDEA 53 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555443
No 15
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=54.42 E-value=1.4e+02 Score=28.73 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=9.2
Q ss_pred hhhhHHhhhhhHHHHHhhhhhH
Q 025725 150 SDLTMELSDLGQEITQGVRSST 171 (249)
Q Consensus 150 sDLT~eLs~L~qei~~GVrss~ 171 (249)
++..++|+++.+++.+.|..-+
T Consensus 188 n~M~~~L~~~~~~l~~~~~~~t 209 (569)
T PRK10600 188 NNMSAELAESYAVLEQRVQEKT 209 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 16
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=52.85 E-value=2.2e+02 Score=27.88 Aligned_cols=62 Identities=21% Similarity=0.237 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhhchhhHHHHhhhcchhhhhhHHhhhhhHHHHHhhhhhHHHHHHHHHHHhhhcC
Q 025725 122 ESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQLTN 186 (249)
Q Consensus 122 ~SlekL~Dt~~eELP~TLaaiRLSGlEIsDLT~eLs~L~qei~~GVrss~~~V~~ae~~lR~~~~ 186 (249)
.+++.+ +.+-+++|+.++.++-.-..++.+.+|+++ .++-+.+.....++..+.+.||++..
T Consensus 253 ~~~~~~-a~~~~~~~~ll~~l~~l~~~l~~ll~~l~~--~~lL~Nle~lt~~LA~as~~l~~l~~ 314 (370)
T PLN03094 253 ALAERA-ADLMEEARPLLLKIQAMAEDLQPLLSEVRD--SGLLKEVEKLTRVAAEASEDLRRLNS 314 (370)
T ss_pred HHHHHH-HHHHhhcHHHHHHHHHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344433 444578999999888888888888877776 57777888888888888888888844
No 17
>PRK10815 sensor protein PhoQ; Provisional
Probab=52.15 E-value=1.3e+02 Score=28.85 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=10.2
Q ss_pred chhhhhhHHhhhhhHHHHH
Q 025725 147 MEISDLTMELSDLGQEITQ 165 (249)
Q Consensus 147 lEIsDLT~eLs~L~qei~~ 165 (249)
-||.++...++.+..++.+
T Consensus 243 ~El~~L~~~ln~~l~~~~~ 261 (485)
T PRK10815 243 RELTSLVRNLNRLLKNERE 261 (485)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4666666665555444433
No 18
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=50.90 E-value=1.5e+02 Score=25.06 Aligned_cols=71 Identities=17% Similarity=0.173 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHh-hhcchhhhhhHHhhhhhHHHHHhhhhhHHHHHHHH
Q 025725 108 FSAIPTLLALKGAAESLEKLMDVTREELPETMAAVR-LSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAE 178 (249)
Q Consensus 108 ~~aIPtllAl~RAA~SlekL~Dt~~eELP~TLaaiR-LSGlEIsDLT~eLs~L~qei~~GVrss~~~V~~ae 178 (249)
...|..+..+-+--...++-.+....+...+-..-+ ..-.|..+..+|+.++.+||.+--+.....-+|+|
T Consensus 114 ~l~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 114 SLVIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555544444455555545554444433222 23345566677777777777764444443444444
No 19
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=46.04 E-value=1.3e+02 Score=25.83 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025725 107 FFSAIPTLLALKGAAESLEKLM 128 (249)
Q Consensus 107 l~~aIPtllAl~RAA~SlekL~ 128 (249)
++..|=....++|.-+.-.+++
T Consensus 15 li~~~~~~~kl~kl~r~Y~~lm 36 (151)
T PF14584_consen 15 LILIIILNIKLRKLKRRYDALM 36 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445556666666666666
No 20
>COG2165 PulG Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=42.08 E-value=93 Score=23.40 Aligned_cols=59 Identities=22% Similarity=0.291 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHhhhcch
Q 025725 87 RHILVLNVIACAAAVSATWLFFSAIPTLLALKGAAESLEKLMDVTREELPETMAAVRLSGME 148 (249)
Q Consensus 87 ~~l~~L~v~a~~vavs~t~ll~~aIPtllAl~RAA~SlekL~Dt~~eELP~TLaaiRLSGlE 148 (249)
++|.++=+.+.++-+++ +..+++|.+....+.++..++....++ -+=..+...|+.+.+
T Consensus 8 rGFTLiElLVvl~Iigi--l~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 66 (149)
T COG2165 8 RGFTLIELLVVLAIIGI--LAALALPSLQGSIDKAKRLEAAQQALR-VIRLALEEYRLDGGR 66 (149)
T ss_pred CCcchHHHHHHHHHHHH--HHHHHHhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCC
Confidence 35555544444433333 446778888888887765555543332 233344444554443
No 21
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=41.69 E-value=2.9e+02 Score=25.93 Aligned_cols=16 Identities=19% Similarity=0.409 Sum_probs=7.1
Q ss_pred hhhhhhHHhhhhhHHH
Q 025725 148 EISDLTMELSDLGQEI 163 (249)
Q Consensus 148 EIsDLT~eLs~L~qei 163 (249)
||.++...+.++.+.+
T Consensus 207 E~g~l~~~~~~m~~~l 222 (565)
T PRK10935 207 ELGLLAKAFNQMSSEL 222 (565)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444443333
No 22
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=40.56 E-value=2.7e+02 Score=24.99 Aligned_cols=31 Identities=6% Similarity=0.123 Sum_probs=20.3
Q ss_pred hcchhhhhhHHhhhhhHHHHHhhhhhHHHHH
Q 025725 145 SGMEISDLTMELSDLGQEITQGVRSSTKAVR 175 (249)
Q Consensus 145 SGlEIsDLT~eLs~L~qei~~GVrss~~~V~ 175 (249)
..-||.++.+.++.+..++.+-+..-.+.+.
T Consensus 218 ~~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~ 248 (461)
T PRK09470 218 GPQEFRQAGASFNQMVTALERMMTSQQRLLS 248 (461)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468888888888777777766655433333
No 23
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=40.24 E-value=9.4 Score=31.34 Aligned_cols=61 Identities=23% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhcCCCCC--cchhhhhhccCCCCchHHHHHHHHHHHHHHHHHHH
Q 025725 163 ITQGVRSSTKAVRIAEERLRQLTNMNPS--VSSQEVVSQRIGPTSPQLARTARDIREGIVQGRAI 225 (249)
Q Consensus 163 i~~GVrss~~~V~~ae~~lR~~~~~a~~--~~~q~~a~~~~~~~~P~va~tAr~~regi~~~Rs~ 225 (249)
+.+-++.+...+..|+..++++...++. ..++.+......+.. +.+--..+||.|.++|..
T Consensus 43 t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~~~~--ls~nI~~IrelI~qAR~~ 105 (138)
T PF06009_consen 43 TNQDISDANKALDDANNSVKNLEQLAPDLLDKLKPLENLSENNSN--LSRNISRIRELIAQARDA 105 (138)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh--HHHHHHHHHHHHHHHHHH
Confidence 3344445555566666666666665543 223333333222222 778888999999999975
No 24
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=39.90 E-value=1.7e+02 Score=24.28 Aligned_cols=63 Identities=19% Similarity=0.331 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHHhhhcchhhhhhHHhhhhhHHHHHhhhhhHHHHHHHHHHHhhhc
Q 025725 119 GAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQLT 185 (249)
Q Consensus 119 RAA~SlekL~Dt~~eELP~TLaaiRLSGlEIsDLT~eLs~L~qei~~GVrss~~~V~~ae~~lR~~~ 185 (249)
+.+.-++.|. ..||+-=.+=..-=..|.+|-.|+.+..+|+.+-|+.....+...+.-|+.++
T Consensus 80 ~kakqIe~LI----dsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~ia 142 (144)
T PF11221_consen 80 RKAKQIEYLI----DSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIREIA 142 (144)
T ss_dssp HHHHHHHHHH----HHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHH----HhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555 55676211111122467889999999999999999999999999999988765
No 25
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=39.67 E-value=1.8e+02 Score=26.56 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhhchh
Q 025725 117 LKGAAESLEKLMDVTREELPE 137 (249)
Q Consensus 117 l~RAA~SlekL~Dt~~eELP~ 137 (249)
++++-..+.++++.+...+|.
T Consensus 33 lg~~l~~l~~~l~~ln~~~~~ 53 (267)
T PF11887_consen 33 LGETLDDLNTLLATLNPRLPQ 53 (267)
T ss_pred HHHHHHHHHHHHHHHhccchH
Confidence 334444444444444444443
No 26
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=38.85 E-value=35 Score=25.89 Aligned_cols=24 Identities=8% Similarity=0.124 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 025725 223 RAILRMFFTLTQFSRMALNYFANR 246 (249)
Q Consensus 223 Rs~l~~~~~~~~~s~~a~~~~~k~ 246 (249)
+.+|-.+|.+.++-||.+++++|+
T Consensus 10 ~ngLitaFa~vG~~m~~S~~lS~~ 33 (60)
T PF03818_consen 10 KNGLITAFAVVGIIMWVSYWLSKK 33 (60)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999876
No 27
>PRK10983 putative inner membrane protein; Provisional
Probab=36.46 E-value=3.6e+02 Score=25.60 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hchhhHHHHhhhcc
Q 025725 105 WLFFSAIPTLLALKGAAESLEKLMDVTRE-----ELPETMAAVRLSGM 147 (249)
Q Consensus 105 ~ll~~aIPtllAl~RAA~SlekL~Dt~~e-----ELP~TLaaiRLSGl 147 (249)
++++..+|............+.+.+.+.+ ..|+.+..+.+.|.
T Consensus 74 ~~llv~iPl~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~lp~ig~ 121 (368)
T PRK10983 74 LVLLFVIPIALLVNSLVDNSGPLIKWASSGDMTLPDLAWLNSIPLIGA 121 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchHHHHhCCcccH
Confidence 45567888888888888888888877654 22445555444443
No 28
>PF00672 HAMP: HAMP domain; InterPro: IPR003660 The HAMP linker domain (present in Histidine kinases, Adenyl cyclases, Methyl-accepting proteins and Phosphatases) is an approximately 50-amino acid alpha-helical region. It is found in bacterial sensor and chemotaxis proteins and in eukaryotic histidine kinases. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. One or several copies of the HAMP domain can be found in association with other domains, such as the histidine kinase domain, the bacterial chemotaxis sensory transducer domain, the PAS repeat, the EAL domain, the GGDEF domain, the protein phosphatase 2C-like domain, the guanylate cyclase domain, or the response regulatory domain. It has been suggested that the HAMP domain possesses a role of regulating the phosphorylation or methylation of homodimeric receptors by transmitting the conformational changes in periplasmic ligand-binding domains to cytoplasmic signalling kinase and methyl-acceptor domains.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016021 integral to membrane; PDB: 3PJX_A 3PJW_A 3ZX6_B 2Y20_B 2Y0Q_D 2Y21_H 3ZRW_C 2L7H_B 2LFS_B 2L7I_B ....
Probab=36.45 E-value=6.7 Score=26.92 Aligned_cols=46 Identities=17% Similarity=0.343 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHH----hhchhhHHHHhhhcchhhhhhHHhhhhhHHHH
Q 025725 117 LKGAAESLEKLMDVTR----EELPETMAAVRLSGMEISDLTMELSDLGQEIT 164 (249)
Q Consensus 117 l~RAA~SlekL~Dt~~----eELP~TLaaiRLSGlEIsDLT~eLs~L~qei~ 164 (249)
.++-.+.+++|.+.++ .++...+ ... ..-||.++.+.++++.+++.
T Consensus 20 ~~~i~~pl~~l~~~~~~i~~g~~~~~i-~~~-~~dEi~~l~~~~n~m~~~l~ 69 (70)
T PF00672_consen 20 ARRITRPLRRLSDAMQRIAQGDLSTRI-PVS-GPDEIGQLARAFNQMADRLR 69 (70)
T ss_dssp -HTTCCCHHHHHHHCCCCHTTBTTTTT-TTT-SSSCHCCCHHHCCCHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCccC-CCC-CccHHHHHHHHHHHHHHHhc
Confidence 3444444444444433 3443333 334 67788888888877776654
No 29
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=34.15 E-value=5e+02 Score=26.09 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=8.6
Q ss_pred chhhhhhHHhhhhhHHH
Q 025725 147 MEISDLTMELSDLGQEI 163 (249)
Q Consensus 147 lEIsDLT~eLs~L~qei 163 (249)
-||..|...++++.+++
T Consensus 231 dEi~~L~~~~n~m~~~l 247 (919)
T PRK11107 231 GELDMLKNGINAMAMSL 247 (919)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 35555555555544433
No 30
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=33.16 E-value=1.6e+02 Score=20.17 Aligned_cols=51 Identities=14% Similarity=0.286 Sum_probs=36.7
Q ss_pred hchhhHHHHhhhcchhhhhhHHhhhhhHHHHHhhhhhHHHHHHHHHHHhhh
Q 025725 134 ELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQL 184 (249)
Q Consensus 134 ELP~TLaaiRLSGlEIsDLT~eLs~L~qei~~GVrss~~~V~~ae~~lR~~ 184 (249)
+|=.++..++=.+.+|++..++=+++..+|..-|-.+..-++.+-..|..+
T Consensus 8 ~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka 58 (63)
T PF05739_consen 8 ELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKA 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777788888888888888888888888777777766666554
No 31
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=30.29 E-value=82 Score=22.78 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=17.9
Q ss_pred hhhhHHhhhhhHHHHHhhhhhHHHHHHHHHH
Q 025725 150 SDLTMELSDLGQEITQGVRSSTKAVRIAEER 180 (249)
Q Consensus 150 sDLT~eLs~L~qei~~GVrss~~~V~~ae~~ 180 (249)
+++.+++.+++.+|..-.+...+-++..+..
T Consensus 41 ~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 41 SELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666655555555554444
No 32
>PRK10414 biopolymer transport protein ExbB; Provisional
Probab=29.43 E-value=1.7e+02 Score=26.72 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025725 106 LFFSAIPTLLALKGAAESLEKLMDVTR 132 (249)
Q Consensus 106 ll~~aIPtllAl~RAA~SlekL~Dt~~ 132 (249)
=+++|||++.+..---..++++.+.+.
T Consensus 184 GL~vAIPAliayn~f~~ri~~~~~~me 210 (244)
T PRK10414 184 GLVAAIPAVVIYNVFARQIGGYKAMLG 210 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999998887777777765443
No 33
>TIGR02797 exbB tonB-system energizer ExbB. This model describes ExbB proteins, part of the MotA/TolQ/ExbB protein family. The paired proteins MotA and MotB, TolQ and TolR, and ExbB and ExbD harness the proton-motive force to drive the flagellar motor, energize the Tol-Pal system, or energize TonB, respectively. Tol-Pal and TonB are both active at the outer membrane. Genomes may have many different TonB-dependent receptors, of which many of those characterized are involved in siderophore transport across the outer membrane.
Probab=29.10 E-value=1.9e+02 Score=25.44 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025725 106 LFFSAIPTLLALKGAAESLEKLM 128 (249)
Q Consensus 106 ll~~aIPtllAl~RAA~SlekL~ 128 (249)
=+++|||++.+.----+..+++.
T Consensus 173 GL~VAIPAli~yn~f~~ri~~~~ 195 (211)
T TIGR02797 173 GLVAAIPAVVIYNVFARSIAGYR 195 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999998776666665554
No 34
>PF10824 DUF2580: Protein of unknown function (DUF2580); InterPro: IPR022536 This entry represents the ESX-1 secretion-associated protein EspC protein family.
Probab=28.96 E-value=2.2e+02 Score=20.39 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHhhchhh------------------HHHHhhhcchhhhhhHHhhhhhHHHHHhhhhhHHHHHHH
Q 025725 116 ALKGAAESLEKLMDVTREELPET------------------MAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIA 177 (249)
Q Consensus 116 Al~RAA~SlekL~Dt~~eELP~T------------------LaaiRLSGlEIsDLT~eLs~L~qei~~GVrss~~~V~~a 177 (249)
.|++.|..++.+.+.+.+-.+.. -.+++-.--+..+....+.+-..++.+.++.+++.-+..
T Consensus 11 ~Lr~~A~~~~~~A~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~L~~aA~~Y~~~ 90 (100)
T PF10824_consen 11 ALRQAAAQLDDIADQLAAAASAVAGASAAVAAAFGPIGAAFAAALAEALEARQAALEQLAEALDEFADALRAAADRYEAT 90 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777666644433 111121222233344444445555666666666666666
Q ss_pred HHHH
Q 025725 178 EERL 181 (249)
Q Consensus 178 e~~l 181 (249)
|+..
T Consensus 91 D~~~ 94 (100)
T PF10824_consen 91 DEDN 94 (100)
T ss_pred HHHH
Confidence 6653
No 35
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=28.35 E-value=1.8e+02 Score=19.29 Aligned_cols=44 Identities=14% Similarity=0.205 Sum_probs=31.3
Q ss_pred HHHhhhcchhhhhhHHhhhhhHHHHHhhhhhHHHHHHHHHHHhh
Q 025725 140 AAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQ 183 (249)
Q Consensus 140 aaiRLSGlEIsDLT~eLs~L~qei~~GVrss~~~V~~ae~~lR~ 183 (249)
..++=-+++|+.+.++=.+...+|...+-.+..-++.+...|+.
T Consensus 22 ~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~ 65 (66)
T smart00397 22 GELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 34444577777777777777778888888887777777766654
No 36
>PF07465 PsaM: Photosystem I protein M (PsaM); InterPro: IPR010010 Members of this protein family are PsaM, which is subunit XII of the photosystem I reaction centre. PsaM forms part of the photosystem I complex and its binding is stabilised by PsaI []. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen.; GO: 0015979 photosynthesis, 0009522 photosystem I, 0030094 plasma membrane-derived photosystem I; PDB: 3PCQ_M 1JB0_M.
Probab=27.77 E-value=78 Score=20.91 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHH
Q 025725 104 TWLFFSAIPTLLALK 118 (249)
Q Consensus 104 t~ll~~aIPtllAl~ 118 (249)
.+++++.+|.++|+|
T Consensus 8 iAL~~Al~~~iLA~r 22 (29)
T PF07465_consen 8 IALVIALITGILALR 22 (29)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777788888875
No 37
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=27.46 E-value=1.7e+02 Score=29.07 Aligned_cols=70 Identities=23% Similarity=0.266 Sum_probs=38.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH----H-HHH------HHHHHHHHHHHHHHhhchhh-----------HHHHhh
Q 025725 87 RHILVLNVIACAAAVSATWLFFSAIPTL----L-ALK------GAAESLEKLMDVTREELPET-----------MAAVRL 144 (249)
Q Consensus 87 ~~l~~L~v~a~~vavs~t~ll~~aIPtl----l-Al~------RAA~SlekL~Dt~~eELP~T-----------LaaiRL 144 (249)
++|..---..-.+.+.++|+|++|||-- + .+. -=|.++-.|-+.+.||...- |..+--
T Consensus 243 ~gL~~A~Y~m~~vtvFV~~vlVAA~pc~~rgL~~~l~~vP~~~~WA~s~~~LQ~rI~eEikkk~~kgs~gLLkEl~~ve~ 322 (389)
T PF05633_consen 243 RGLLRAMYGMKSVTVFVCWVLVAAFPCQDRGLQVHLSAVPRQFSWAPSFISLQERINEEIKKKERKGSCGLLKELQQVEA 322 (389)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHeeecCCccccCCCCCCccccccchHHHHHHHHHHHHHhhccccCcchHHHHHHHHHH
Confidence 3444333445556666688888888742 1 122 11556777778888877542 333333
Q ss_pred hcchhhhhhHHh
Q 025725 145 SGMEISDLTMEL 156 (249)
Q Consensus 145 SGlEIsDLT~eL 156 (249)
+..++.|+++++
T Consensus 323 ~vr~L~el~d~~ 334 (389)
T PF05633_consen 323 SVRELHELIDSF 334 (389)
T ss_pred HHHHHHHHHHhc
Confidence 445555555544
No 38
>PF05802 EspB: Enterobacterial EspB protein
Probab=27.41 E-value=2.3e+02 Score=27.57 Aligned_cols=59 Identities=20% Similarity=0.224 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHhhhcchhhhhhHHhhhhhHHHHHhhhhhHHHHH
Q 025725 117 LKGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVR 175 (249)
Q Consensus 117 l~RAA~SlekL~Dt~~eELP~TLaaiRLSGlEIsDLT~eLs~L~qei~~GVrss~~~V~ 175 (249)
+.++++++.+.++-+++-+...|+..-=----++|..||+.++-|.+++-....+.+.+
T Consensus 152 aqkyaEsl~d~~~KAseiMQQim~t~T~Aa~r~s~v~ddv~~~a~~as~~ae~~A~Aa~ 210 (317)
T PF05802_consen 152 AQKYAESLADAMEKASEIMQQIMATATKAASRTSGVADDVATSAQKASQLAEQAADAAQ 210 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566555555555555555443333334566777777666666665555544443
No 39
>PRK00708 sec-independent translocase; Provisional
Probab=27.23 E-value=4.9e+02 Score=23.85 Aligned_cols=21 Identities=10% Similarity=0.039 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025725 110 AIPTLLALKGAAESLEKLMDV 130 (249)
Q Consensus 110 aIPtllAl~RAA~SlekL~Dt 130 (249)
.--.+..++|.++.+..=+|-
T Consensus 32 lGk~v~k~R~~a~e~r~~~~e 52 (209)
T PRK00708 32 FGKMTARMRKMAGEFRRQFDE 52 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777665543
No 40
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=27.09 E-value=7e+02 Score=25.57 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=19.1
Q ss_pred cchhhhhhHHhhhhhHHHHHhhhhhHHHHHHH
Q 025725 146 GMEISDLTMELSDLGQEITQGVRSSTKAVRIA 177 (249)
Q Consensus 146 GlEIsDLT~eLs~L~qei~~GVrss~~~V~~a 177 (249)
.-||.+|...+..+..++.+-++.-.+..+..
T Consensus 461 ~DEIg~La~afn~M~~~L~~~~~~l~~~s~~l 492 (703)
T TIGR03785 461 RDEIGDLSRSFAQMVARLRQYTHYLENMSSRL 492 (703)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777777777776666666555444443333
No 41
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=26.30 E-value=2.9e+02 Score=24.82 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025725 106 LFFSAIPTLLALKGAAESLEKLMDVTR 132 (249)
Q Consensus 106 ll~~aIPtllAl~RAA~SlekL~Dt~~ 132 (249)
=+++|||++.+.---.+.++++...+.
T Consensus 178 GL~vAIPAli~yN~f~~ri~~i~~~le 204 (227)
T PRK10801 178 GLFAAIPAVMAYNRLNQRVNKLELNYD 204 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999988777666666654433
No 42
>PF14341 PilX_N: PilX N-terminal
Probab=26.30 E-value=1.1e+02 Score=21.50 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=17.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHh
Q 025725 161 QEITQGVRSSTKAVRIAEERLR 182 (249)
Q Consensus 161 qei~~GVrss~~~V~~ae~~lR 182 (249)
+++....+...++.++||+|+|
T Consensus 30 ~~~a~n~~~~~~A~~aAEagl~ 51 (51)
T PF14341_consen 30 ERMAGNQRDSQQAFQAAEAGLE 51 (51)
T ss_pred HHHHHhHHHHHHHHHHHHhhcC
Confidence 3566777888888999999875
No 43
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=25.93 E-value=3.9e+02 Score=23.67 Aligned_cols=22 Identities=14% Similarity=0.196 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhhchh
Q 025725 116 ALKGAAESLEKLMDVTREELPE 137 (249)
Q Consensus 116 Al~RAA~SlekL~Dt~~eELP~ 137 (249)
.+.+.-..++++.+.+.+..|.
T Consensus 168 ~l~~~l~~l~~l~~~l~~~~~~ 189 (291)
T TIGR00996 168 QLRNLLDGLAQLTAALNARDGD 189 (291)
T ss_pred HHHHHHHHHHHHHHHHHhcchh
Confidence 4667777778888877775543
No 44
>CHL00190 psaM photosystem I subunit XII; Provisional
Probab=25.86 E-value=85 Score=20.92 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHH
Q 025725 104 TWLFFSAIPTLLALK 118 (249)
Q Consensus 104 t~ll~~aIPtllAl~ 118 (249)
.+++++.+|.++|+|
T Consensus 9 iAL~~Al~~~iLA~r 23 (30)
T CHL00190 9 IALFLALTTGILAIR 23 (30)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456677788888875
No 45
>TIGR03053 PS_I_psaM photosystem I reaction center subunit XII. Members of this protein family are PsaM, which is subunit XII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen. The seed alignment for this model includes sequences from Pfam model pfam07465 and additional sequences, as from Prochlorococcus.
Probab=25.57 E-value=87 Score=20.60 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 025725 103 ATWLFFSAIPTLLALK 118 (249)
Q Consensus 103 ~t~ll~~aIPtllAl~ 118 (249)
+.+++++.+|.++|+|
T Consensus 7 ~iaL~~Al~~~iLA~r 22 (29)
T TIGR03053 7 FIALVIALIAGILALR 22 (29)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456777788888875
No 46
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=25.39 E-value=4.8e+02 Score=23.11 Aligned_cols=28 Identities=11% Similarity=0.169 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhhchhhHHHHhh
Q 025725 117 LKGAAESLEKLMDVTREELPETMAAVRL 144 (249)
Q Consensus 117 l~RAA~SlekL~Dt~~eELP~TLaaiRL 144 (249)
+.....++.+.++--.+++..++..++.
T Consensus 151 l~~~l~~l~~~l~~~~~~l~~~l~~l~~ 178 (291)
T TIGR00996 151 LNAILNALAEALAGQGPQLRNLLDGLAQ 178 (291)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3333344444444444555555555443
No 47
>PRK10807 paraquat-inducible protein B; Provisional
Probab=25.34 E-value=2.7e+02 Score=28.24 Aligned_cols=107 Identities=12% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhh-chhhHHHHhhhcchhhhhhHHhhhhhHHHHHhhhhhH--HHHHHHHHHHhhhcCCCCCcch
Q 025725 117 LKGAAESLEKLMDVTREE-LPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSST--KAVRIAEERLRQLTNMNPSVSS 193 (249)
Q Consensus 117 l~RAA~SlekL~Dt~~eE-LP~TLaaiRLSGlEIsDLT~eLs~L~qei~~GVrss~--~~V~~ae~~lR~~~~~a~~~~~ 193 (249)
+.+..+.+..++|.+.+- +.+++..+.-+=.+......++....+++.+-+.+.. ...+..++.|+.+..+-....-
T Consensus 415 l~~l~~~~~~il~kin~lple~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL~~l~~~l~~~~~ 494 (547)
T PRK10807 415 LAQIQQKLMEALDKINNLPLNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTLRELNRSMQGFQP 494 (547)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHhhcCC
Q ss_pred hhhhhccCCCCchHHHHHHHHHHHHHHHHH
Q 025725 194 QEVVSQRIGPTSPQLARTARDIREGIVQGR 223 (249)
Q Consensus 194 q~~a~~~~~~~~P~va~tAr~~regi~~~R 223 (249)
.-...+....+-+-+.+++|++|..+.+..
T Consensus 495 ~s~~~~~l~~tl~~l~~~~r~lr~l~~~L~ 524 (547)
T PRK10807 495 GSPAYNKMVADMQRLDQVLRELQPVLKTLN 524 (547)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 48
>TIGR02796 tolQ TolQ protein. TolQ is one of the essential components of the Tol-Pal system. Together with TolR, it harnesses protonmotive force to energize TolA, which spans the periplasm to reach the complex of TolB and Pal at the outer member. The tol-pal system proves to be important for maintaining outer membrane integrity. Gene pairs similar to the TolQ and TolR gene pair often number several per genome, but this model describes specificially TolQ per se, as found in tol-pal operons. A close homolog, excluded from this model, is ExbB of the ExbB/ExbD/TonB protein complex, which powers transport of siderophores and vitamin B12 across the bacterial outer membrane. The Tol-Pal system is exploited by colicin and filamentous phage DNA to enter the cell. It is also implicated in pathogenesis in several bacterial species
Probab=24.47 E-value=2.5e+02 Score=24.76 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025725 106 LFFSAIPTLLALKGAAESLEKLMDVT 131 (249)
Q Consensus 106 ll~~aIPtllAl~RAA~SlekL~Dt~ 131 (249)
=+++|||++.+..=--+.++++.+.+
T Consensus 177 GL~vAIPali~yn~f~~~i~~~~~~m 202 (215)
T TIGR02796 177 GLFAAIPAVIAYNKLSTQVNKIEQRY 202 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999988655555555554433
No 49
>COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only]
Probab=24.24 E-value=4.9e+02 Score=22.78 Aligned_cols=95 Identities=19% Similarity=0.181 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh--------------HHHHhhhcchhhhhhH
Q 025725 89 ILVLNVIACAAAVSATWLFFSAIPTLLALKGAAESLEKLMDVTREELPET--------------MAAVRLSGMEISDLTM 154 (249)
Q Consensus 89 l~~L~v~a~~vavs~t~ll~~aIPtllAl~RAA~SlekL~Dt~~eELP~T--------------LaaiRLSGlEIsDLT~ 154 (249)
+.++++++.++++-+...+=..=|+|-+..+.-.-+++=+|.+..|=-+- -+.|--.--++.|+-+
T Consensus 8 ~~iiAiAf~vL~I~li~tlkkv~~tldevakt~~~l~~qv~gi~~eT~~Ll~K~N~L~eDvq~Kv~tld~vf~aV~dl~~ 87 (139)
T COG4768 8 LAIIAIAFLVLVIYLIITLKKVSKTLDEVAKTLKGLTSQVDGITHETEELLHKTNTLAEDVQGKVATLDPVFDAVKDLGQ 87 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHhHHHHHHHHHHH
Confidence 45677777777777777788888999999998888877666555443332 2333333444555555
Q ss_pred HhhhhhHHHHHhhhhhHHHHHHHHHHHhh
Q 025725 155 ELSDLGQEITQGVRSSTKAVRIAEERLRQ 183 (249)
Q Consensus 155 eLs~L~qei~~GVrss~~~V~~ae~~lR~ 183 (249)
.|+++-|....-.+++++.+..-+..+-|
T Consensus 88 SV~~ln~s~r~~~~~~t~~~~~~~~~iaq 116 (139)
T COG4768 88 SVSDLNQSVRHLATRATNAVEKNEKKIAQ 116 (139)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhHHHHHH
Confidence 55554444444444444444444444433
No 50
>PRK01770 sec-independent translocase; Provisional
Probab=24.20 E-value=5.1e+02 Score=23.01 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhhch
Q 025725 116 ALKGAAESLEKLMDVTREELP 136 (249)
Q Consensus 116 Al~RAA~SlekL~Dt~~eELP 136 (249)
.+++..+.+.++++-+++|+-
T Consensus 31 ~lg~~i~~~R~~~~~~k~e~~ 51 (171)
T PRK01770 31 TVAGWIRALRSLATTVQNELT 51 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444544444443
No 51
>PRK09835 sensor kinase CusS; Provisional
Probab=23.39 E-value=5.7e+02 Score=23.24 Aligned_cols=36 Identities=11% Similarity=0.226 Sum_probs=24.0
Q ss_pred chhhhhhHHhhhhhHHHHHhhhhhHHHHHHHHHHHh
Q 025725 147 MEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLR 182 (249)
Q Consensus 147 lEIsDLT~eLs~L~qei~~GVrss~~~V~~ae~~lR 182 (249)
-||.++...++++.+++.+-+..-.+.+...-..||
T Consensus 239 dEl~~l~~~~n~m~~~l~~~~~~~~~~~~~laheL~ 274 (482)
T PRK09835 239 IELEQLVLSFNHMIERIEDVFTRQSNFSADIAHEIR 274 (482)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 488899888888888888776664444443333333
No 52
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=23.20 E-value=4.7e+02 Score=23.83 Aligned_cols=19 Identities=16% Similarity=0.469 Sum_probs=11.8
Q ss_pred chhhhhhHHhhhhhHHHHH
Q 025725 147 MEISDLTMELSDLGQEITQ 165 (249)
Q Consensus 147 lEIsDLT~eLs~L~qei~~ 165 (249)
-|+.++...+.++.+++.+
T Consensus 241 dEig~l~~~~~~~~~~l~~ 259 (607)
T PRK11360 241 GELGEISQAINNLAQALRE 259 (607)
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 4667776666666555544
No 53
>PF11812 DUF3333: Domain of unknown function (DUF3333); InterPro: IPR024573 This N-terminal domain is functionally uncharacterised and it is found in proteins annotated as putative phosphate ABC transporter permease proteins. This presumed domain is typically between 116 to 159 amino acids in length.
Probab=22.51 E-value=1.1e+02 Score=26.28 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=24.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025725 83 NLTHRHILVLNVIACAAAVSATWLFFSAIP 112 (249)
Q Consensus 83 nl~~~~l~~L~v~a~~vavs~t~ll~~aIP 112 (249)
|-.++.|=++|++++++++++.++|+..|=
T Consensus 9 ~~~e~rFr~~g~~Ai~~~l~fL~~ll~sI~ 38 (155)
T PF11812_consen 9 YRAERRFRAYGLAAIAIALAFLVILLFSIV 38 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677889999999999999999988773
No 54
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=22.29 E-value=5.6e+02 Score=23.03 Aligned_cols=8 Identities=25% Similarity=0.439 Sum_probs=3.0
Q ss_pred HHhhhhhH
Q 025725 154 MELSDLGQ 161 (249)
Q Consensus 154 ~eLs~L~q 161 (249)
||++++.+
T Consensus 220 dEi~~l~~ 227 (461)
T PRK09470 220 QEFRQAGA 227 (461)
T ss_pred HHHHHHHH
Confidence 33333333
No 55
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=22.19 E-value=3.2e+02 Score=19.97 Aligned_cols=19 Identities=42% Similarity=0.501 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025725 90 LVLNVIACAAAVSATWLFF 108 (249)
Q Consensus 90 ~~L~v~a~~vavs~t~ll~ 108 (249)
|++++++.+++-+++.+|+
T Consensus 1 F~~g~l~Ga~~Ga~~glL~ 19 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLF 19 (74)
T ss_pred CHHHHHHHHHHHHHHHHHh
Confidence 3466666666555555444
No 56
>PRK11637 AmiB activator; Provisional
Probab=22.11 E-value=7e+02 Score=23.82 Aligned_cols=6 Identities=0% Similarity=0.196 Sum_probs=2.1
Q ss_pred chhhhh
Q 025725 147 MEISDL 152 (249)
Q Consensus 147 lEIsDL 152 (249)
.+|+++
T Consensus 89 ~~i~~~ 94 (428)
T PRK11637 89 RKLRET 94 (428)
T ss_pred HHHHHH
Confidence 333333
No 57
>PRK10506 hypothetical protein; Provisional
Probab=22.02 E-value=3.1e+02 Score=22.89 Aligned_cols=47 Identities=15% Similarity=0.102 Sum_probs=23.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhh
Q 025725 86 HRHILVLNVIACAAAVSATWLFFSAIPTLLAL------KGAAESLEKLMDVTREE 134 (249)
Q Consensus 86 ~~~l~~L~v~a~~vavs~t~ll~~aIPtllAl------~RAA~SlekL~Dt~~eE 134 (249)
+++|-++=+.+.++-++ .++..++|.+... ..+++.+...+..+++|
T Consensus 8 ~~GFTLiEllvvl~Ii~--il~~~a~p~~~~~~~~~~~~~~~~~l~~~l~~ar~~ 60 (162)
T PRK10506 8 QRGYTLIELLVVMTIVS--ILSAWGLYGWQRWQQRQRLWQTAQQLLDFLLRLQED 60 (162)
T ss_pred CCCeeHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555444444433322 3445677877654 34555555555555544
No 58
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=21.54 E-value=6.1e+02 Score=22.97 Aligned_cols=23 Identities=13% Similarity=0.312 Sum_probs=15.6
Q ss_pred cchhhhhhHHhhhhhHHHHHhhh
Q 025725 146 GMEISDLTMELSDLGQEITQGVR 168 (249)
Q Consensus 146 GlEIsDLT~eLs~L~qei~~GVr 168 (249)
.-||.++...+..+.+++.+-.+
T Consensus 216 ~dE~~~l~~~~n~m~~~l~~~~~ 238 (466)
T PRK10549 216 RDELGRLAQDFNQLASTLEKNEQ 238 (466)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 35777788877777777765443
No 59
>PRK04654 sec-independent translocase; Provisional
Probab=21.39 E-value=6.6e+02 Score=23.30 Aligned_cols=16 Identities=13% Similarity=0.289 Sum_probs=6.3
Q ss_pred hhhhhHHhhhhhHHHH
Q 025725 149 ISDLTMELSDLGQEIT 164 (249)
Q Consensus 149 IsDLT~eLs~L~qei~ 164 (249)
|.|+.+++++.+|++.
T Consensus 70 i~~~~~~lk~~~~el~ 85 (214)
T PRK04654 70 LREAEDQLRNTQQQVE 85 (214)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334443333333
No 60
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=21.13 E-value=9.9e+02 Score=25.21 Aligned_cols=61 Identities=11% Similarity=0.186 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHhhhcchhhhhhHH-hhhhhHHHHHhhhhhH
Q 025725 111 IPTLLALKGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTME-LSDLGQEITQGVRSST 171 (249)
Q Consensus 111 IPtllAl~RAA~SlekL~Dt~~eELP~TLaaiRLSGlEIsDLT~e-Ls~L~qei~~GVrss~ 171 (249)
|=++.+=.+..+.+++.-+++++-+-++-.=++-+-.+|..+.++ .+++.+.+.+-+..++
T Consensus 158 i~aF~~n~~l~~~v~~~~~~~~~~~~Dl~~~l~~~~~qi~~l~~~ny~~~~~~v~~~L~~~~ 219 (806)
T PF05478_consen 158 ICAFVANQQLSTGVDDTPNTVNSTLDDLRTFLNDTPQQIDHLLVQNYSELKDHVSSDLDNIG 219 (806)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334555566777777777777777777766666777777777776 5555544444444443
No 61
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=20.89 E-value=2e+02 Score=22.65 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q 025725 99 AAVSATWLFFSAIPTLLALKGAAESLEKLMDVTREELPET 138 (249)
Q Consensus 99 vavs~t~ll~~aIPtllAl~RAA~SlekL~Dt~~eELP~T 138 (249)
+++.+..++++.+=.+..+.++.++++.+. ...+|.+
T Consensus 15 l~~~~~ll~~~~~~~~~~l~~~~~~l~~~~---~~~~~~~ 51 (171)
T PF02203_consen 15 LALFLLLLLVVGGLGFWGLRSSNESLEEIY---QQSLQQV 51 (171)
T ss_dssp ----------HHCCCCCCHHHHHHHH-HHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 333444455566667778888888876665 3444444
No 62
>PRK11878 psaM photosystem I reaction center subunit XII; Reviewed
Probab=20.86 E-value=1.2e+02 Score=20.74 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHH
Q 025725 104 TWLFFSAIPTLLALK 118 (249)
Q Consensus 104 t~ll~~aIPtllAl~ 118 (249)
.+++++.+|.++|+|
T Consensus 12 iaL~~Al~~giLA~R 26 (34)
T PRK11878 12 VALVVALHAGVLALR 26 (34)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456677788888875
No 63
>PRK10604 sensor protein RstB; Provisional
Probab=20.83 E-value=6.8e+02 Score=23.22 Aligned_cols=32 Identities=13% Similarity=0.253 Sum_probs=19.0
Q ss_pred cchhhhhhHHhhhhhHHHHHhhhhhHHHHHHH
Q 025725 146 GMEISDLTMELSDLGQEITQGVRSSTKAVRIA 177 (249)
Q Consensus 146 GlEIsDLT~eLs~L~qei~~GVrss~~~V~~a 177 (249)
.-||.++.+.++...+++.+-+++-.+.++.+
T Consensus 188 ~~el~~L~~~fn~m~~~l~~~~~~~~~l~~~v 219 (433)
T PRK10604 188 GSSLERLGVAFNQMADNINALIASKKQLIDGI 219 (433)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677777777777766666555444444433
No 64
>COG0840 Tar Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=20.80 E-value=6.3e+02 Score=22.79 Aligned_cols=44 Identities=27% Similarity=0.159 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHH--HHHHHHHhhchhhHHHHhhhcchhhhhhHHhh
Q 025725 114 LLALKGAAESLE--KLMDVTREELPETMAAVRLSGMEISDLTMELS 157 (249)
Q Consensus 114 llAl~RAA~Sle--kL~Dt~~eELP~TLaaiRLSGlEIsDLT~eLs 157 (249)
|-|--.||+--| |=|.++.+|+-.--.--.-+..||.+++.++.
T Consensus 257 LNAaIEAARAGE~GrGFaVVAdEVR~LA~~s~~st~~I~~~i~~iq 302 (408)
T COG0840 257 LNAAIEAARAGEAGRGFAVVADEVRKLAERSADSAKEIGLLIEEIQ 302 (408)
T ss_pred HHHHHHHHhcCcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444 55666666665544444555666666665553
No 65
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.58 E-value=4.2e+02 Score=24.92 Aligned_cols=32 Identities=9% Similarity=0.094 Sum_probs=19.3
Q ss_pred hhhhhHHhhhhhHHHHHhhhhhHHHHHHHHHH
Q 025725 149 ISDLTMELSDLGQEITQGVRSSTKAVRIAEER 180 (249)
Q Consensus 149 IsDLT~eLs~L~qei~~GVrss~~~V~~ae~~ 180 (249)
.+.++++|.+-.++|.+-+++..+++......
T Consensus 185 l~~~~~~ln~~~~~i~~~i~~l~~~~~~~~~~ 216 (359)
T COG1463 185 LAQFTDALNARDGDIGALIANLNQLLDSLAAA 216 (359)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHhh
Confidence 44555666666666666666666666665444
No 66
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=20.57 E-value=7.8e+02 Score=23.78 Aligned_cols=37 Identities=19% Similarity=0.169 Sum_probs=22.6
Q ss_pred HHHHhhhcchhhhhhHHhhhhhHHHHHhhhhhHHHHH
Q 025725 139 MAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVR 175 (249)
Q Consensus 139 LaaiRLSGlEIsDLT~eLs~L~qei~~GVrss~~~V~ 175 (249)
..++.----+|.++..+|++=.++.+..+..+.+.+.
T Consensus 184 ~~~~n~M~~~L~~~~~~l~~~~~~~t~~l~~~~~~l~ 220 (569)
T PRK10600 184 GTALNNMSAELAESYAVLEQRVQEKTAGLEQKNQILS 220 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455545556667777766666666666666555543
No 67
>PRK10574 putative major pilin subunit; Provisional
Probab=20.50 E-value=3.3e+02 Score=23.04 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025725 106 LFFSAIPTLLALKGAAESLEKLMD 129 (249)
Q Consensus 106 ll~~aIPtllAl~RAA~SlekL~D 129 (249)
|..++||.++...+-++..+.+.+
T Consensus 22 LaaiaiP~~~~~~~~a~~~~~~~~ 45 (146)
T PRK10574 22 LSAIGIPAYQNYLQKAALTDMLQT 45 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999988776655554444
No 68
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=20.12 E-value=4.1e+02 Score=20.36 Aligned_cols=59 Identities=27% Similarity=0.265 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhHHHHhhhcchhhhhhHHhhhhhHHHHHhhhhhHHHHHHHHH
Q 025725 116 ALKGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEE 179 (249)
Q Consensus 116 Al~RAA~SlekL~Dt~~eELP~TLaaiRLSGlEIsDLT~eLs~L~qei~~GVrss~~~V~~ae~ 179 (249)
++......++.++..-.....++= +..|+.+++.||.+--++|..-+.--.++|..+|.
T Consensus 9 ev~~sl~~l~~~~~~~~~~~~~~~-----~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~ 67 (97)
T PF09177_consen 9 EVQSSLDRLESLYRRWQRLRSDTS-----SSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEK 67 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC-----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555554444433322 33466666666666666666666666666666554
Done!