Query 025725
Match_columns 249
No_of_seqs 67 out of 69
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 16:16:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025725.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025725hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eff_K Voltage-gated potassium 74.3 12 0.0004 28.8 7.2 42 66-115 52-93 (139)
2 2f95_B Sensory rhodopsin II tr 61.8 5.4 0.00019 29.4 2.8 27 146-172 111-137 (163)
3 3pjs_K KCSA, voltage-gated pot 57.8 5.9 0.0002 31.7 2.6 84 66-164 79-162 (166)
4 3zrx_A AF1503 protein, osmolar 45.6 64 0.0022 21.4 7.1 24 146-169 36-59 (115)
5 2ch7_A Methyl-accepting chemot 42.8 39 0.0013 28.1 5.4 32 130-161 163-194 (309)
6 2f95_B Sensory rhodopsin II tr 40.1 16 0.00054 26.8 2.3 12 153-164 111-122 (163)
7 3ku8_A GYRA14, DNA gyrase subu 40.0 14 0.00049 30.7 2.2 23 143-165 124-146 (156)
8 2dnx_A Syntaxin-12; snare, HAB 35.6 37 0.0013 26.6 3.9 63 156-218 12-74 (130)
9 1ykh_B RNA polymerase II holoe 33.7 1.4E+02 0.0048 23.6 7.1 65 118-186 67-131 (132)
10 1yke_B RNA polymerase II holoe 32.8 1.3E+02 0.0045 24.5 6.9 66 118-187 67-132 (151)
11 3g67_A Methyl-accepting chemot 30.1 1.8E+02 0.006 24.7 7.5 43 128-170 114-156 (213)
12 1jb0_M Photosystem 1 reaction 30.0 42 0.0014 21.5 2.7 15 104-118 10-24 (31)
13 3m1f_V VOPL, putative uncharac 29.4 13 0.00044 24.0 0.2 16 153-168 3-18 (31)
14 3gwk_C SAG1039, putative uncha 27.2 1.6E+02 0.0055 20.5 7.6 68 116-183 19-94 (98)
15 2lx0_A Membrane fusion protein 26.3 72 0.0025 20.5 3.3 23 224-246 10-32 (32)
16 3iqt_A Signal transduction his 25.6 2.1E+02 0.0071 21.9 6.6 86 123-224 30-120 (123)
17 3zbh_A ESXA; unknown function, 22.9 1.9E+02 0.0064 19.8 8.2 67 116-182 20-94 (99)
18 3rf3_A Vinculin, metavinculin; 21.2 1.2E+02 0.0043 26.4 5.1 29 130-158 69-97 (258)
19 3myf_A Sensor protein; HPT, hi 20.1 2.4E+02 0.0084 21.2 6.0 60 123-184 21-85 (119)
No 1
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=74.29 E-value=12 Score=28.79 Aligned_cols=42 Identities=24% Similarity=0.314 Sum_probs=24.4
Q ss_pred cccccCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025725 66 TTSVGSSSSSSLQLSQWNLTHRHILVLNVIACAAAVSATWLFFSAIPTLL 115 (249)
Q Consensus 66 ~ssVGs~~~~~l~~~~wnl~~~~l~~L~v~a~~vavs~t~ll~~aIPtll 115 (249)
.+|||-|++.|.. ...| +++++..++++.+.++++..|=...
T Consensus 52 ~tTvGyGd~~P~t-----~~~r---~~~~~~~~~G~~~~~~~~~~i~~~~ 93 (139)
T 3eff_K 52 ATTVGYGDLYPVT-----LWGR---LVAVVVMVAGITSFGLVTAALATWF 93 (139)
T ss_dssp HTTCCCSSSCCCS-----SHHH---HHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred eecccCCCCcCCC-----cCHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789998865431 1223 3455566667666666666554443
No 2
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=61.80 E-value=5.4 Score=29.39 Aligned_cols=27 Identities=19% Similarity=0.350 Sum_probs=0.0
Q ss_pred cchhhhhhHHhhhhhHHHHHhhhhhHH
Q 025725 146 GMEISDLTMELSDLGQEITQGVRSSTK 172 (249)
Q Consensus 146 GlEIsDLT~eLs~L~qei~~GVrss~~ 172 (249)
.-||.++.+.++++..++.+-++...+
T Consensus 111 ~dEi~~L~~~~n~m~~~l~~~~~~~~~ 137 (163)
T 2f95_B 111 EDEIGDLYAAFDEMRQSVRTSLEDAKN 137 (163)
T ss_dssp ---------------------------
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777766665555433
No 3
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=57.79 E-value=5.9 Score=31.69 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=38.5
Q ss_pred cccccCCCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHhhh
Q 025725 66 TTSVGSSSSSSLQLSQWNLTHRHILVLNVIACAAAVSATWLFFSAIPTLLALKGAAESLEKLMDVTREELPETMAAVRLS 145 (249)
Q Consensus 66 ~ssVGs~~~~~l~~~~wnl~~~~l~~L~v~a~~vavs~t~ll~~aIPtllAl~RAA~SlekL~Dt~~eELP~TLaaiRLS 145 (249)
.+|||=|++.|.. -..+ +++++..++++.+.++++..|-.... .+..+.-++.-+...++.-..+
T Consensus 79 ~tTvGyGDi~P~t-----~~~r---~~~~~~~l~G~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~l------ 143 (166)
T 3pjs_K 79 ATTVGYGDLYPVT-----LWGR---LVAVVVMVAGITSFGLVTAALATWFV-GQEQQQQQQFVRHSEKAAEEAY------ 143 (166)
T ss_dssp HSCCCCSSSCCCS-----STTT---TTTHHHHHHHHHHHHHHHTTSSSSSS-SSHHHHHHHHHHHHHHHHHHHH------
T ss_pred hccccCCCCCCCC-----HhHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH------
Confidence 4789988865432 1223 23444455566655555555544332 1111222222222222222222
Q ss_pred cchhhhhhHHhhhhhHHHH
Q 025725 146 GMEISDLTMELSDLGQEIT 164 (249)
Q Consensus 146 GlEIsDLT~eLs~L~qei~ 164 (249)
-.+|.++.+++.++.+++.
T Consensus 144 ~~~i~~L~~~l~~le~~~~ 162 (166)
T 3pjs_K 144 TRTTRALHERFDRLERMLD 162 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 2345566666666655544
No 4
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=45.58 E-value=64 Score=21.40 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=13.9
Q ss_pred cchhhhhhHHhhhhhHHHHHhhhh
Q 025725 146 GMEISDLTMELSDLGQEITQGVRS 169 (249)
Q Consensus 146 GlEIsDLT~eLs~L~qei~~GVrs 169 (249)
.-||.++...+..+.+++.+-++.
T Consensus 36 ~dEi~~l~~~~n~m~~~l~~~~~~ 59 (115)
T 3zrx_A 36 ADEIGILAKSIERLRRSLKQLADD 59 (115)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666666666666555555554
No 5
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=42.80 E-value=39 Score=28.12 Aligned_cols=32 Identities=9% Similarity=0.246 Sum_probs=14.9
Q ss_pred HHHhhchhhHHHHhhhcchhhhhhHHhhhhhH
Q 025725 130 VTREELPETMAAVRLSGMEISDLTMELSDLGQ 161 (249)
Q Consensus 130 t~~eELP~TLaaiRLSGlEIsDLT~eLs~L~q 161 (249)
++.+|+-.--...+..+.+|.++++++.++..
T Consensus 163 VVA~eIr~LA~~t~~~~~~i~~v~~~i~~~a~ 194 (309)
T 2ch7_A 163 VVADEIRKLAEESQQASENVRRVVNEIRSIAE 194 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444455555555555544433
No 6
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=40.07 E-value=16 Score=26.83 Aligned_cols=12 Identities=25% Similarity=0.257 Sum_probs=0.0
Q ss_pred hHHhhhhhHHHH
Q 025725 153 TMELSDLGQEIT 164 (249)
Q Consensus 153 T~eLs~L~qei~ 164 (249)
.||+++|.+.+.
T Consensus 111 ~dEi~~L~~~~n 122 (163)
T 2f95_B 111 EDEIGDLYAAFD 122 (163)
T ss_dssp ------------
T ss_pred CChHHHHHHHHH
Confidence 345554444333
No 7
>3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain, topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A {Escherichia coli} PDB: 4ely_A* 1x75_A* 3kua_A* 4elz_A*
Probab=39.96 E-value=14 Score=30.73 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=21.5
Q ss_pred hhhcchhhhhhHHhhhhhHHHHH
Q 025725 143 RLSGMEISDLTMELSDLGQEITQ 165 (249)
Q Consensus 143 RLSGlEIsDLT~eLs~L~qei~~ 165 (249)
||+|+|+..+.+|..+|..+|.+
T Consensus 124 rLT~LE~~ki~~E~~eL~~~I~~ 146 (156)
T 3ku8_A 124 KLTGLEHEKLLDEYKELLDQIAE 146 (156)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999875
No 8
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.57 E-value=37 Score=26.55 Aligned_cols=63 Identities=19% Similarity=0.129 Sum_probs=36.4
Q ss_pred hhhhhHHHHHhhhhhHHHHHHHHHHHhhhcCCCCCcchhhhhhccCCCCchHHHHHHHHHHHH
Q 025725 156 LSDLGQEITQGVRSSTKAVRIAEERLRQLTNMNPSVSSQEVVSQRIGPTSPQLARTARDIREG 218 (249)
Q Consensus 156 Ls~L~qei~~GVrss~~~V~~ae~~lR~~~~~a~~~~~q~~a~~~~~~~~P~va~tAr~~reg 218 (249)
+.+|.++|+.+|-.-...|..-+.-++++|+..-...+++.-.....+..=++..|...+|+.
T Consensus 12 f~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L 74 (130)
T 2dnx_A 12 FSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKEL 74 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666777777778888755444444444444444555555555555543
No 9
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=33.70 E-value=1.4e+02 Score=23.65 Aligned_cols=65 Identities=15% Similarity=0.259 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHhhhcchhhhhhHHhhhhhHHHHHhhhhhHHHHHHHHHHHhhhcC
Q 025725 118 KGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQLTN 186 (249)
Q Consensus 118 ~RAA~SlekL~Dt~~eELP~TLaaiRLSGlEIsDLT~eLs~L~qei~~GVrss~~~V~~ae~~lR~~~~ 186 (249)
-..+.-++.|. ..||+-=.+=..-=..|.+|-.|+.+..+|+.+-|+.+.+.+..++.-||.++.
T Consensus 67 i~k~kqIe~LI----dsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i~~ 131 (132)
T 1ykh_B 67 ILKTRQINKLI----DSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDFVD 131 (132)
T ss_dssp HHHHHHHHHHH----HHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHH----HhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555555 556654211122223577888999999999999999999999999999987753
No 10
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=32.84 E-value=1.3e+02 Score=24.54 Aligned_cols=66 Identities=15% Similarity=0.236 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHhhchhhHHHHhhhcchhhhhhHHhhhhhHHHHHhhhhhHHHHHHHHHHHhhhcCC
Q 025725 118 KGAAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQLTNM 187 (249)
Q Consensus 118 ~RAA~SlekL~Dt~~eELP~TLaaiRLSGlEIsDLT~eLs~L~qei~~GVrss~~~V~~ae~~lR~~~~~ 187 (249)
-..+.-++.|. ..||+-=.+-..-=..|.+|-.|+.+..+|+.+-|+.+.+.+..++.-|+.++.-
T Consensus 67 i~kakqIe~LI----dsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~~ 132 (151)
T 1yke_B 67 ILKTRQINKLI----DSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVDG 132 (151)
T ss_dssp HHHHHHHHHHH----HHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHH----HhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555 5566541111122235778889999999999999999999999999999988764
No 11
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=30.12 E-value=1.8e+02 Score=24.73 Aligned_cols=43 Identities=9% Similarity=0.070 Sum_probs=17.5
Q ss_pred HHHHHhhchhhHHHHhhhcchhhhhhHHhhhhhHHHHHhhhhh
Q 025725 128 MDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVRSS 170 (249)
Q Consensus 128 ~Dt~~eELP~TLaaiRLSGlEIsDLT~eLs~L~qei~~GVrss 170 (249)
|.++.+|+-.--...+-+..+|.++..++.+-.++..+.+...
T Consensus 114 FaVVA~Evr~La~~t~~~~~~I~~~i~~i~~~~~~~~~~~~~~ 156 (213)
T 3g67_A 114 FMIVANEVQNLSNETNEVTKQIVEKAREILESSQRSLENLEFM 156 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433333333334444444444444333333333333
No 12
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=29.99 E-value=42 Score=21.52 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHH
Q 025725 104 TWLFFSAIPTLLALK 118 (249)
Q Consensus 104 t~ll~~aIPtllAl~ 118 (249)
.+++++.+|.++|+|
T Consensus 10 iAL~~Al~~~iLA~r 24 (31)
T 1jb0_M 10 VALVIALLPAVLAFR 24 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456777788888875
No 13
>3m1f_V VOPL, putative uncharacterized protein VPA1370; actin, actin-binding protein, crosslinking, nucleator, prote protein interaction; HET: HIC ATP; 2.89A {Oryctolagus cuniculus}
Probab=29.45 E-value=13 Score=24.04 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=13.2
Q ss_pred hHHhhhhhHHHHHhhh
Q 025725 153 TMELSDLGQEITQGVR 168 (249)
Q Consensus 153 T~eLs~L~qei~~GVr 168 (249)
-+|=|.||.+|.+||+
T Consensus 3 nedrSKLMEqIRqGVk 18 (31)
T 3m1f_V 3 NEDHSKLMEQIRQGVK 18 (31)
T ss_dssp STTHHHHHHHHHHCCC
T ss_pred chhHHHHHHHHHhhhc
Confidence 4567889999999986
No 14
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=27.24 E-value=1.6e+02 Score=20.51 Aligned_cols=68 Identities=10% Similarity=0.166 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhH--------HHHhhhcchhhhhhHHhhhhhHHHHHhhhhhHHHHHHHHHHHhh
Q 025725 116 ALKGAAESLEKLMDVTREELPETM--------AAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQ 183 (249)
Q Consensus 116 Al~RAA~SlekL~Dt~~eELP~TL--------aaiRLSGlEIsDLT~eLs~L~qei~~GVrss~~~V~~ae~~lR~ 183 (249)
.+.+++..++...+.+..++-+.- .+..=.=.+...-.+++.++-++|.+-++.++...+.+|..+-+
T Consensus 19 ~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~D~~~A~ 94 (98)
T 3gwk_C 19 KYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADIAS 94 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666555431 11122223556666777777788888899999999998887543
No 15
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=26.30 E-value=72 Score=20.48 Aligned_cols=23 Identities=22% Similarity=0.350 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 025725 224 AILRMFFTLTQFSRMALNYFANR 246 (249)
Q Consensus 224 s~l~~~~~~~~~s~~a~~~~~k~ 246 (249)
.++-.+.++-.|--|.++|++|+
T Consensus 10 aglvalltflafgfwlfkylqkk 32 (32)
T 2lx0_A 10 AGLVALLTFLAFGFWLFKYLQKK 32 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 45667778888889999999873
No 16
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=25.64 E-value=2.1e+02 Score=21.92 Aligned_cols=86 Identities=15% Similarity=0.169 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhchhhHHHHhhhcchhhhhhHHhhhhhHHHHHhhh-----hhHHHHHHHHHHHhhhcCCCCCcchhhhh
Q 025725 123 SLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVR-----SSTKAVRIAEERLRQLTNMNPSVSSQEVV 197 (249)
Q Consensus 123 SlekL~Dt~~eELP~TLaaiRLSGlEIsDLT~eLs~L~qei~~GVr-----ss~~~V~~ae~~lR~~~~~a~~~~~q~~a 197 (249)
-+.++++.+.+++|.+++.|+- -++-.| .+++.++.|.|-.+.+ .-.++.+.-|..+|+-.+.
T Consensus 30 La~elL~~fl~~~~~~~~~l~~-a~~~~d-~~~l~~~aHkLkGaa~~~Ga~~L~~~c~~LE~~~r~g~~~---------- 97 (123)
T 3iqt_A 30 LARDMLQMLLDFLPEVRNKVEE-QLVGEN-PEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKE---------- 97 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHTTCC-CTTHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTCCG----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHcCC-HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCCH----------
Confidence 3567888889999999999884 333344 3567777777765443 3445556667766653321
Q ss_pred hccCCCCchHHHHHHHHHHHHHHHHHH
Q 025725 198 SQRIGPTSPQLARTARDIREGIVQGRA 224 (249)
Q Consensus 198 ~~~~~~~~P~va~tAr~~regi~~~Rs 224 (249)
+..+|.+..-..++...+.+++.
T Consensus 98 ----~~l~~~l~~L~del~~v~~~~~~ 120 (123)
T 3iqt_A 98 ----EDLEPELLELLDEMDNVAREASK 120 (123)
T ss_dssp ----GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 13345555555555555544443
No 17
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=22.87 E-value=1.9e+02 Score=19.81 Aligned_cols=67 Identities=10% Similarity=0.072 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHhhchhh--------HHHHhhhcchhhhhhHHhhhhhHHHHHhhhhhHHHHHHHHHHHh
Q 025725 116 ALKGAAESLEKLMDVTREELPET--------MAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLR 182 (249)
Q Consensus 116 Al~RAA~SlekL~Dt~~eELP~T--------LaaiRLSGlEIsDLT~eLs~L~qei~~GVrss~~~V~~ae~~lR 182 (249)
.+.+++..++...+.+..++-.. =.+.+-.=.+...-..++.+.-++|.+.++.++...+.+|..+-
T Consensus 20 ~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~d~~~a 94 (99)
T 3zbh_A 20 QYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQIA 94 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555554442 11111122345556666777777888888888888888887653
No 18
>3rf3_A Vinculin, metavinculin; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Homo sapiens} PDB: 4dj9_A 1rke_A 1rkc_A 1syq_A 1ydi_A 2gww_A 2hsq_A 2ibf_A 3tj6_A 2gdc_A 4e17_A 4e18_A 3tj5_A 1u6h_A 1xwj_A 1zvz_A 1zw2_A 1zw3_A 3s90_A 4ehp_A ...
Probab=21.23 E-value=1.2e+02 Score=26.43 Aligned_cols=29 Identities=10% Similarity=0.264 Sum_probs=26.2
Q ss_pred HHHhhchhhHHHHhhhcchhhhhhHHhhh
Q 025725 130 VTREELPETMAAVRLSGMEISDLTMELSD 158 (249)
Q Consensus 130 t~~eELP~TLaaiRLSGlEIsDLT~eLs~ 158 (249)
.+.+|+|+++..+|.+|.-|...+.++.+
T Consensus 69 ~lk~eM~~A~~~v~~ag~~l~~aa~~~~~ 97 (258)
T 3rf3_A 69 ILKRDMPPAFIKVENACTKLVQAAQMLQS 97 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68899999999999999999999988653
No 19
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=20.11 E-value=2.4e+02 Score=21.20 Aligned_cols=60 Identities=12% Similarity=0.217 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhchhhHHHHhhhcchhhhhhHHhhhhhHHHHHhhh-----hhHHHHHHHHHHHhhh
Q 025725 123 SLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQGVR-----SSTKAVRIAEERLRQL 184 (249)
Q Consensus 123 SlekL~Dt~~eELP~TLaaiRLSGlEIsDLT~eLs~L~qei~~GVr-----ss~~~V~~ae~~lR~~ 184 (249)
-+.+++..+.+++|.+++.|+- -++-.| .+++.++.|.|-.+.+ .-.++.+..|..+|+-
T Consensus 21 L~~~lL~~fl~~~~~~~~~l~~-a~~~~d-~~~l~~~aHkLkGaa~~~Ga~~L~~~~~~LE~~~r~~ 85 (119)
T 3myf_A 21 LALEMLKMLLDSLPETVEKIQT-ALGQND-QATMLSTIHKLHGASCYCGVPTTQRLCQEIESALKRQ 85 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHTC-HHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHH-HHHcCC-HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcC
Confidence 4567888889999999999884 344445 4677777777765443 3345556667666653
Done!