Query 025725
Match_columns 249
No_of_seqs 67 out of 69
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 16:16:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025725.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025725hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t01a1 a.24.9.1 (A:1-125) Vin 56.3 2.5 0.00018 32.0 2.1 28 131-158 70-97 (125)
2 d1x75a1 e.11.1.1 (A:363-494) D 43.3 5.6 0.00041 30.0 2.2 24 142-165 102-125 (132)
3 d1i5na_ a.24.10.3 (A:) Chemota 38.9 42 0.0031 23.2 6.4 20 114-133 56-75 (128)
4 d1jb0m_ f.23.19.1 (M:) Subunit 33.9 22 0.0016 21.4 3.4 18 104-121 10-27 (31)
5 d1st6a4 a.24.9.1 (A:372-488) V 32.4 52 0.0038 24.5 6.2 47 138-184 56-102 (117)
6 d1st6a3 a.24.9.1 (A:253-371) V 29.9 32 0.0023 25.8 4.6 27 136-162 63-89 (119)
7 d1st6a5 a.24.9.1 (A:489-646) V 28.0 13 0.00097 29.1 2.2 72 136-207 47-118 (158)
8 d1t3ua_ d.244.1.1 (A:) ZapA ho 27.0 81 0.0059 20.8 7.2 53 116-169 22-81 (92)
9 d1skyb1 a.69.1.1 (B:372-502) F 21.5 47 0.0035 24.2 4.1 45 120-166 82-126 (131)
10 d2pila_ d.24.1.1 (A:) Pilin Gc 20.3 1.1E+02 0.0082 20.0 6.0 17 107-123 17-33 (158)
No 1
>d1t01a1 a.24.9.1 (A:1-125) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=56.31 E-value=2.5 Score=32.03 Aligned_cols=28 Identities=11% Similarity=0.213 Sum_probs=24.5
Q ss_pred HHhhchhhHHHHhhhcchhhhhhHHhhh
Q 025725 131 TREELPETMAAVRLSGMEISDLTMELSD 158 (249)
Q Consensus 131 ~~eELP~TLaaiRLSGlEIsDLT~eLs~ 158 (249)
+++|+|++...+|.+|..+.+.++.+.+
T Consensus 70 lk~eM~~A~~~vr~ag~~l~~aa~~l~~ 97 (125)
T d1t01a1 70 LKRDMPPAFIKVENACTKLVRAAQMLQA 97 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999999999888887653
No 2
>d1x75a1 e.11.1.1 (A:363-494) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Probab=43.32 E-value=5.6 Score=29.97 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.4
Q ss_pred HhhhcchhhhhhHHhhhhhHHHHH
Q 025725 142 VRLSGMEISDLTMELSDLGQEITQ 165 (249)
Q Consensus 142 iRLSGlEIsDLT~eLs~L~qei~~ 165 (249)
=||+|+|...+..|..+|..+|.+
T Consensus 102 ~rLT~LE~~kl~~E~~eL~~~I~~ 125 (132)
T d1x75a1 102 QKLTGLEHEKLLDEYKELLDQIAE 125 (132)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999988864
No 3
>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}
Probab=38.92 E-value=42 Score=23.24 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 025725 114 LLALKGAAESLEKLMDVTRE 133 (249)
Q Consensus 114 llAl~RAA~SlekL~Dt~~e 133 (249)
+..+...|..+|.+++.+++
T Consensus 56 l~~i~~lah~lE~~l~~lr~ 75 (128)
T d1i5na_ 56 FTILQETTHLMENLLDEARR 75 (128)
T ss_dssp CHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 44555666666666666654
No 4
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=33.88 E-value=22 Score=21.37 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025725 104 TWLFFSAIPTLLALKGAA 121 (249)
Q Consensus 104 t~ll~~aIPtllAl~RAA 121 (249)
.+++++.||.++|++-+-
T Consensus 10 valvial~pg~lafrlat 27 (31)
T d1jb0m_ 10 VALVIALLPAVLAFRLST 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456778899999997553
No 5
>d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=32.43 E-value=52 Score=24.52 Aligned_cols=47 Identities=26% Similarity=0.181 Sum_probs=25.5
Q ss_pred hHHHHhhhcchhhhhhHHhhhhhHHHHHhhhhhHHHHHHHHHHHhhh
Q 025725 138 TMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQL 184 (249)
Q Consensus 138 TLaaiRLSGlEIsDLT~eLs~L~qei~~GVrss~~~V~~ae~~lR~~ 184 (249)
-=+.|.=.+-||..+|++|.||.++=-..-=.+.++.++...+|..+
T Consensus 56 ~r~~il~lc~ei~~lt~qLadLr~~GkG~sPeA~~lA~qi~~kL~~L 102 (117)
T d1st6a4 56 ERDDILRSLGEISALTAKLSDLRRHGKGDSPEARALAKQIATSLQNL 102 (117)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 35555556777888888888777653222222333344444444433
No 6
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=29.94 E-value=32 Score=25.77 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=17.1
Q ss_pred hhhHHHHhhhcchhhhhhHHhhhhhHH
Q 025725 136 PETMAAVRLSGMEISDLTMELSDLGQE 162 (249)
Q Consensus 136 P~TLaaiRLSGlEIsDLT~eLs~L~qe 162 (249)
|+-=+.|.=.+-||..+|++|.+|.++
T Consensus 63 ~~~r~~Il~~c~ei~~lt~qLadLr~~ 89 (119)
T d1st6a3 63 GKERREILGTCKTLGQMTDQLADLRAR 89 (119)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444455555666777777777776654
No 7
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=28.00 E-value=13 Score=29.05 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=37.2
Q ss_pred hhhHHHHhhhcchhhhhhHHhhhhhHHHHHhhhhhHHHHHHHHHHHhhhcCCCCCcchhhhhhccCCCCchH
Q 025725 136 PETMAAVRLSGMEISDLTMELSDLGQEITQGVRSSTKAVRIAEERLRQLTNMNPSVSSQEVVSQRIGPTSPQ 207 (249)
Q Consensus 136 P~TLaaiRLSGlEIsDLT~eLs~L~qei~~GVrss~~~V~~ae~~lR~~~~~a~~~~~q~~a~~~~~~~~P~ 207 (249)
|+.=..|.=.+-||..+|++|.+|.++=...--.+.++-++....|+.+..-...+..+.+.-.-.++..|+
T Consensus 47 ~~~r~~Il~~C~el~~l~~~LadLr~~G~G~sPeA~~lA~qi~~kL~dL~~~v~~Avv~~v~d~f~dt~tpl 118 (158)
T d1st6a5 47 GPYRQDLLAKCDRVDQLAAQLADLAARGEGESPQARAIAAQLQDSLKDLKARMQEAMTQEVSDVFSDTTTPI 118 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSTTSSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 334455555666777777777766654221112233334444444444444444455555555555666665
No 8
>d1t3ua_ d.244.1.1 (A:) ZapA homologue PA5227 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=26.95 E-value=81 Score=20.82 Aligned_cols=53 Identities=23% Similarity=0.235 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHhhchhh-------HHHHhhhcchhhhhhHHhhhhhHHHHHhhhh
Q 025725 116 ALKGAAESLEKLMDVTREELPET-------MAAVRLSGMEISDLTMELSDLGQEITQGVRS 169 (249)
Q Consensus 116 Al~RAA~SlekL~Dt~~eELP~T-------LaaiRLSGlEIsDLT~eLs~L~qei~~GVrs 169 (249)
.++++|+-+.+-++.+++..|.. |+++-+. -|+-++-++..+..+++.+-++.
T Consensus 22 ~l~~aA~~ln~k~~~l~~~~~~~~~~~~lvmaaLnla-~e~~~~~~~~~~~~~~~~~~i~~ 81 (92)
T d1t3ua_ 22 NLESAARYLDGKMREIRSSGKVIGADRVAVMAALNIT-HDLLHRKERLDQESSSTRERVRE 81 (92)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCSCSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999998888754 6665543 22333334444444444443333
No 9
>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Probab=21.52 E-value=47 Score=24.19 Aligned_cols=45 Identities=4% Similarity=0.056 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhhchhhHHHHhhhcchhhhhhHHhhhhhHHHHHh
Q 025725 120 AAESLEKLMDVTREELPETMAAVRLSGMEISDLTMELSDLGQEITQG 166 (249)
Q Consensus 120 AA~SlekL~Dt~~eELP~TLaaiRLSGlEIsDLT~eLs~L~qei~~G 166 (249)
-..--+.|.+.++.+-|+.|..|+-+| +++| -++|.+..++..++
T Consensus 82 I~~fe~~ll~~l~~~~~~~l~~I~~~~-~l~d-e~~L~~~i~~fk~~ 126 (131)
T d1skyb1 82 VRRFEKEFYLWLDQNGQHLLEHIRTTK-DLPN-EDDLNQAIEAFKKT 126 (131)
T ss_dssp HHHHHHHHHHHHHHGGGGTHHHHHHHS-CCCH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHcC-CCCc-HHHHHHHHHHHHHH
Confidence 334456788888999999999998665 7776 35555544444433
No 10
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=20.26 E-value=1.1e+02 Score=20.04 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025725 107 FFSAIPTLLALKGAAES 123 (249)
Q Consensus 107 l~~aIPtllAl~RAA~S 123 (249)
...++|.++...+.++.
T Consensus 17 aaia~P~~~~~~~~a~~ 33 (158)
T d2pila_ 17 AAVALPAYQDYTARAQV 33 (158)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35678999887776553
Done!