Query 025727
Match_columns 249
No_of_seqs 182 out of 1284
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:52:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.4 3.9E-13 8.6E-18 93.6 5.6 54 51-104 3-59 (60)
2 PF00010 HLH: Helix-loop-helix 99.4 4E-13 8.6E-18 92.7 5.0 50 52-101 1-55 (55)
3 smart00353 HLH helix loop heli 99.3 1.8E-12 4E-17 88.3 5.6 49 57-105 1-52 (53)
4 KOG1319 bHLHZip transcription 98.9 7.3E-10 1.6E-14 93.6 4.0 65 52-116 62-133 (229)
5 KOG1318 Helix loop helix trans 98.9 1.8E-09 4E-14 101.6 6.8 55 52-106 233-291 (411)
6 KOG2483 Upstream transcription 98.5 5.1E-07 1.1E-11 79.7 8.5 67 48-114 55-124 (232)
7 cd04897 ACT_ACR_3 ACT domain-c 98.4 2.6E-06 5.6E-11 62.8 8.9 63 172-234 3-72 (75)
8 KOG4304 Transcriptional repres 98.4 1.9E-07 4.2E-12 83.4 3.4 54 51-104 31-92 (250)
9 cd04895 ACT_ACR_1 ACT domain-c 98.4 2.9E-06 6.3E-11 62.0 8.5 49 172-220 3-51 (72)
10 cd04896 ACT_ACR-like_3 ACT dom 98.3 6.5E-06 1.4E-10 60.6 8.5 49 172-220 2-52 (75)
11 KOG3561 Aryl-hydrocarbon recep 98.2 1.4E-06 3E-11 88.3 5.5 61 43-103 11-75 (803)
12 cd04927 ACT_ACR-like_2 Second 98.2 6.8E-06 1.5E-10 60.3 7.7 49 171-219 1-50 (76)
13 cd04900 ACT_UUR-like_1 ACT dom 98.0 4.7E-05 1E-09 55.0 9.1 48 172-219 3-51 (73)
14 KOG0561 bHLH transcription fac 97.9 5.2E-06 1.1E-10 75.1 2.8 56 52-107 60-117 (373)
15 cd04925 ACT_ACR_2 ACT domain-c 97.9 6.8E-05 1.5E-09 54.5 8.0 47 172-218 2-48 (74)
16 PF13740 ACT_6: ACT domain; PD 97.8 0.00023 5.1E-09 51.9 9.5 65 170-234 2-66 (76)
17 KOG3960 Myogenic helix-loop-he 97.7 8.1E-05 1.8E-09 66.0 6.8 63 52-114 118-182 (284)
18 KOG2588 Predicted DNA-binding 97.7 1.5E-05 3.2E-10 81.5 2.3 65 51-115 275-340 (953)
19 cd04899 ACT_ACR-UUR-like_2 C-t 97.7 0.00049 1.1E-08 48.5 8.9 50 172-221 2-51 (70)
20 cd04893 ACT_GcvR_1 ACT domains 97.6 0.00063 1.4E-08 49.8 9.0 64 171-234 2-65 (77)
21 PLN03217 transcription factor 97.6 0.00016 3.4E-09 54.1 5.5 54 64-117 19-78 (93)
22 cd04928 ACT_TyrKc Uncharacteri 97.5 0.00095 2.1E-08 48.2 8.5 49 172-220 3-52 (68)
23 cd04926 ACT_ACR_4 C-terminal 97.5 0.00058 1.3E-08 49.3 7.4 47 172-218 3-49 (72)
24 KOG4029 Transcription factor H 97.5 0.00012 2.6E-09 64.5 4.3 57 50-106 107-167 (228)
25 cd04873 ACT_UUR-ACR-like ACT d 97.4 0.0019 4.1E-08 45.0 8.9 49 172-220 2-50 (70)
26 PF01842 ACT: ACT domain; Int 97.1 0.0047 1E-07 42.4 8.4 37 172-208 2-38 (66)
27 PRK05007 PII uridylyl-transfer 97.1 0.0024 5.2E-08 66.6 9.7 67 168-234 806-878 (884)
28 PRK00275 glnD PII uridylyl-tra 97.0 0.0049 1.1E-07 64.4 11.0 72 169-240 813-891 (895)
29 cd04869 ACT_GcvR_2 ACT domains 97.0 0.0074 1.6E-07 43.7 8.5 64 172-235 1-71 (81)
30 cd04872 ACT_1ZPV ACT domain pr 96.9 0.0039 8.4E-08 46.5 7.0 62 171-232 2-65 (88)
31 PF13291 ACT_4: ACT domain; PD 96.9 0.012 2.5E-07 42.8 9.2 52 170-221 6-59 (80)
32 PRK00194 hypothetical protein; 96.8 0.0062 1.3E-07 45.4 7.2 64 170-233 3-68 (90)
33 cd04870 ACT_PSP_1 CT domains f 96.8 0.0096 2.1E-07 43.0 8.0 63 172-234 1-64 (75)
34 PRK04374 PII uridylyl-transfer 96.6 0.016 3.4E-07 60.5 10.7 60 160-219 785-845 (869)
35 cd04875 ACT_F4HF-DF N-terminal 96.5 0.027 5.9E-07 40.4 8.4 63 172-234 1-67 (74)
36 cd04887 ACT_MalLac-Enz ACT_Mal 96.4 0.032 7E-07 39.5 8.6 49 173-221 2-51 (74)
37 cd04886 ACT_ThrD-II-like C-ter 96.4 0.026 5.5E-07 39.0 7.8 48 173-220 1-53 (73)
38 PRK03059 PII uridylyl-transfer 96.4 0.021 4.6E-07 59.4 10.3 50 168-217 784-833 (856)
39 PRK05092 PII uridylyl-transfer 96.4 0.025 5.4E-07 59.4 10.7 60 160-219 832-892 (931)
40 PRK01759 glnD PII uridylyl-tra 96.3 0.016 3.5E-07 60.2 9.1 61 160-220 772-833 (854)
41 PRK03381 PII uridylyl-transfer 96.1 0.02 4.3E-07 59.0 8.1 53 169-221 706-758 (774)
42 PRK03381 PII uridylyl-transfer 96.1 0.044 9.5E-07 56.5 10.6 51 169-219 598-648 (774)
43 TIGR01693 UTase_glnD [Protein- 96.0 0.038 8.3E-07 57.4 9.6 54 168-221 666-720 (850)
44 cd04894 ACT_ACR-like_1 ACT dom 95.8 0.043 9.3E-07 39.0 6.4 50 172-221 2-51 (69)
45 TIGR01693 UTase_glnD [Protein- 95.8 0.044 9.5E-07 57.0 9.4 62 160-221 768-830 (850)
46 PRK01759 glnD PII uridylyl-tra 95.7 0.054 1.2E-06 56.4 9.6 51 169-219 676-727 (854)
47 PRK05007 PII uridylyl-transfer 95.5 0.073 1.6E-06 55.7 9.7 52 169-220 700-752 (884)
48 PRK00275 glnD PII uridylyl-tra 95.4 0.056 1.2E-06 56.6 8.2 51 169-219 703-754 (895)
49 PRK03059 PII uridylyl-transfer 95.3 0.084 1.8E-06 55.1 9.1 52 169-220 677-729 (856)
50 COG2844 GlnD UTP:GlnB (protein 95.2 0.047 1E-06 56.0 6.8 63 159-221 779-842 (867)
51 cd04889 ACT_PDH-BS-like C-term 95.1 0.079 1.7E-06 35.6 5.8 51 173-223 1-52 (56)
52 cd04888 ACT_PheB-BS C-terminal 95.1 0.15 3.3E-06 36.0 7.4 50 172-221 2-52 (76)
53 cd04877 ACT_TyrR N-terminal AC 94.9 0.14 3E-06 36.7 6.9 46 172-220 2-47 (74)
54 cd04876 ACT_RelA-SpoT ACT dom 94.9 0.24 5.1E-06 32.7 7.6 48 173-220 1-49 (71)
55 PRK04435 hypothetical protein; 94.7 0.26 5.6E-06 40.6 8.7 55 167-221 66-121 (147)
56 PRK05092 PII uridylyl-transfer 94.7 0.13 2.7E-06 54.2 8.4 51 169-219 731-782 (931)
57 cd02116 ACT ACT domains are co 94.6 0.27 5.8E-06 30.7 7.0 35 173-207 1-35 (60)
58 PRK04374 PII uridylyl-transfer 94.4 0.17 3.6E-06 53.0 8.5 53 169-221 689-742 (869)
59 cd04874 ACT_Af1403 N-terminal 94.2 0.44 9.4E-06 32.7 7.9 36 172-207 2-37 (72)
60 cd04882 ACT_Bt0572_2 C-termina 94.2 0.14 3E-06 35.0 5.2 46 173-218 2-49 (65)
61 cd04881 ACT_HSDH-Hom ACT_HSDH_ 94.1 0.28 6E-06 34.2 6.8 49 171-219 1-51 (79)
62 KOG4447 Transcription factor T 94.0 0.031 6.7E-07 46.4 1.9 51 52-102 78-130 (173)
63 cd04878 ACT_AHAS N-terminal AC 94.0 0.55 1.2E-05 32.0 8.1 47 172-218 2-50 (72)
64 cd04905 ACT_CM-PDT C-terminal 93.9 0.58 1.3E-05 33.9 8.3 49 173-221 4-53 (80)
65 cd04880 ACT_AAAH-PDT-like ACT 93.8 0.34 7.5E-06 34.5 6.9 47 174-220 3-50 (75)
66 PRK08577 hypothetical protein; 93.8 0.71 1.5E-05 37.2 9.5 54 167-220 53-108 (136)
67 cd04908 ACT_Bt0572_1 N-termina 93.8 0.28 6.2E-06 34.2 6.3 46 173-220 4-49 (66)
68 PRK06027 purU formyltetrahydro 93.8 0.45 9.7E-06 43.4 9.1 63 170-232 6-72 (286)
69 KOG3910 Helix loop helix trans 93.5 0.046 1E-06 53.0 2.3 57 50-106 524-584 (632)
70 PRK11589 gcvR glycine cleavage 93.2 0.23 4.9E-06 42.8 6.0 63 169-231 7-69 (190)
71 TIGR00655 PurU formyltetrahydr 93.0 0.7 1.5E-05 42.1 9.2 61 172-232 2-66 (280)
72 TIGR00119 acolac_sm acetolacta 93.0 0.58 1.3E-05 39.1 7.9 63 172-234 3-67 (157)
73 cd04909 ACT_PDH-BS C-terminal 92.6 1 2.2E-05 31.3 7.6 48 172-219 3-52 (69)
74 cd04879 ACT_3PGDH-like ACT_3PG 92.6 0.62 1.3E-05 31.6 6.5 44 173-216 2-47 (71)
75 cd04883 ACT_AcuB C-terminal AC 92.2 1.2 2.7E-05 30.9 7.8 49 172-220 3-53 (72)
76 PRK13011 formyltetrahydrofolat 92.2 1 2.3E-05 41.1 9.1 66 170-235 7-75 (286)
77 PRK07334 threonine dehydratase 92.1 0.98 2.1E-05 42.9 9.2 52 170-221 326-382 (403)
78 cd04903 ACT_LSD C-terminal ACT 92.1 1 2.3E-05 30.5 7.1 33 173-205 2-34 (71)
79 PRK11895 ilvH acetolactate syn 91.9 0.93 2E-05 38.1 7.8 60 172-231 4-65 (161)
80 cd04884 ACT_CBS C-terminal ACT 91.4 1.4 3E-05 31.1 7.4 34 173-206 2-35 (72)
81 cd04931 ACT_PAH ACT domain of 90.9 1.6 3.4E-05 33.0 7.5 50 172-221 16-66 (90)
82 PRK13010 purU formyltetrahydro 90.3 1.3 2.8E-05 40.6 7.8 65 170-234 9-78 (289)
83 cd04904 ACT_AAAH ACT domain of 89.3 1.5 3.2E-05 31.5 6.0 47 175-221 5-52 (74)
84 KOG4395 Transcription factor A 88.5 0.72 1.6E-05 41.4 4.5 51 52-102 174-227 (285)
85 COG3830 ACT domain-containing 87.9 0.89 1.9E-05 34.6 4.1 62 170-231 3-66 (90)
86 PRK11152 ilvM acetolactate syn 87.6 3.6 7.8E-05 30.2 7.1 56 172-228 5-62 (76)
87 CHL00100 ilvH acetohydroxyacid 87.4 3.2 6.9E-05 35.3 7.7 65 172-236 4-70 (174)
88 cd04929 ACT_TPH ACT domain of 87.4 2.9 6.3E-05 30.3 6.5 45 177-221 7-52 (74)
89 KOG3898 Transcription factor N 87.4 0.37 7.9E-06 43.4 2.0 51 52-102 72-125 (254)
90 PRK10872 relA (p)ppGpp synthet 86.8 3.6 7.9E-05 42.5 9.1 52 170-221 666-719 (743)
91 KOG3558 Hypoxia-inducible fact 86.8 0.5 1.1E-05 47.8 2.8 46 53-98 47-96 (768)
92 COG2844 GlnD UTP:GlnB (protein 86.6 1.5 3.3E-05 45.4 6.1 50 169-218 683-733 (867)
93 cd04902 ACT_3PGDH-xct C-termin 86.4 2.1 4.6E-05 29.6 5.2 45 174-218 3-49 (73)
94 KOG3560 Aryl-hydrocarbon recep 86.4 0.57 1.2E-05 46.2 2.9 38 61-98 34-75 (712)
95 PRK13562 acetolactate synthase 86.4 2.3 5E-05 32.0 5.5 61 172-232 4-67 (84)
96 KOG3559 Transcriptional regula 86.3 0.7 1.5E-05 44.2 3.3 42 57-98 6-51 (598)
97 TIGR00691 spoT_relA (p)ppGpp s 86.2 4.6 9.9E-05 41.3 9.4 52 170-221 610-662 (683)
98 PRK06737 acetolactate synthase 86.1 4.4 9.5E-05 29.8 6.8 59 172-230 4-64 (76)
99 cd04901 ACT_3PGDH C-terminal A 84.8 1.1 2.3E-05 30.9 3.0 46 174-219 3-48 (69)
100 PF13710 ACT_5: ACT domain; PD 84.1 5.9 0.00013 27.7 6.5 49 179-227 1-51 (63)
101 cd04885 ACT_ThrD-I Tandem C-te 84.0 6.2 0.00013 27.6 6.7 56 174-230 2-59 (68)
102 PRK11092 bifunctional (p)ppGpp 84.0 5.4 0.00012 41.0 8.7 52 170-221 626-678 (702)
103 COG0788 PurU Formyltetrahydrof 82.8 6.9 0.00015 35.6 7.9 67 170-236 7-77 (287)
104 PRK11589 gcvR glycine cleavage 81.7 8.7 0.00019 33.0 8.0 63 171-233 96-165 (190)
105 PRK00227 glnD PII uridylyl-tra 79.0 13 0.00027 38.3 9.3 50 171-221 547-597 (693)
106 COG4492 PheB ACT domain-contai 78.3 12 0.00025 30.8 7.0 53 168-220 70-123 (150)
107 cd04906 ACT_ThrD-I_1 First of 77.3 20 0.00044 26.2 7.8 48 171-220 2-50 (85)
108 cd04930 ACT_TH ACT domain of t 76.8 6.5 0.00014 31.1 5.2 47 175-221 46-93 (115)
109 COG4747 ACT domain-containing 76.4 8.3 0.00018 31.1 5.6 44 172-215 5-48 (142)
110 PRK08198 threonine dehydratase 75.5 18 0.00039 34.2 8.8 53 168-220 325-382 (404)
111 TIGR01127 ilvA_1Cterm threonin 75.3 20 0.00043 33.6 9.0 64 168-231 303-372 (380)
112 PRK11899 prephenate dehydratas 71.6 21 0.00045 32.6 7.9 49 173-221 197-246 (279)
113 PRK06382 threonine dehydratase 71.0 22 0.00047 33.8 8.3 53 168-220 328-385 (406)
114 cd04922 ACT_AKi-HSDH-ThrA_2 AC 70.5 29 0.00063 23.2 7.3 34 172-205 3-39 (66)
115 PRK08526 threonine dehydratase 69.7 28 0.0006 33.3 8.6 63 168-230 324-392 (403)
116 PRK08178 acetolactate synthase 68.9 26 0.00057 26.9 6.7 56 170-226 8-65 (96)
117 COG2716 GcvR Glycine cleavage 65.3 6.7 0.00015 33.4 3.1 63 169-231 4-66 (176)
118 cd04868 ACT_AK-like ACT domain 64.5 32 0.0007 21.7 5.8 26 180-205 13-38 (60)
119 COG0317 SpoT Guanosine polypho 64.2 44 0.00095 34.5 9.1 53 169-221 626-679 (701)
120 KOG4447 Transcription factor T 63.0 11 0.00023 31.6 3.7 43 58-100 28-72 (173)
121 cd04890 ACT_AK-like_1 ACT doma 61.1 36 0.00078 22.8 5.7 25 179-203 12-36 (62)
122 cd04892 ACT_AK-like_2 ACT doma 60.4 43 0.00094 21.6 7.1 34 172-205 2-38 (65)
123 COG2061 ACT-domain-containing 58.9 42 0.00092 28.2 6.6 51 171-221 6-59 (170)
124 cd04919 ACT_AK-Hom3_2 ACT doma 58.4 53 0.0012 22.0 7.4 27 179-205 13-39 (66)
125 KOG3582 Mlx interactors and re 57.2 4.2 9.2E-05 41.4 0.6 62 50-111 649-715 (856)
126 PF02344 Myc-LZ: Myc leucine z 56.6 13 0.00028 22.8 2.4 17 60-76 13-29 (32)
127 PF12999 PRKCSH-like: Glucosid 56.4 78 0.0017 27.0 8.0 90 13-115 76-173 (176)
128 PF13840 ACT_7: ACT domain ; P 55.9 30 0.00065 24.0 4.7 34 169-202 5-42 (65)
129 PF05088 Bac_GDH: Bacterial NA 53.7 67 0.0015 36.1 9.0 54 168-221 487-545 (1528)
130 PF06005 DUF904: Protein of un 53.5 31 0.00067 25.1 4.5 26 90-115 13-38 (72)
131 COG3074 Uncharacterized protei 53.5 26 0.00055 25.5 3.9 26 90-115 13-38 (79)
132 PRK11898 prephenate dehydratas 50.5 54 0.0012 29.8 6.6 50 172-221 198-249 (283)
133 PRK10622 pheA bifunctional cho 49.9 75 0.0016 30.3 7.7 45 177-221 304-349 (386)
134 PF02120 Flg_hook: Flagellar h 47.6 80 0.0017 22.5 6.0 47 159-206 27-79 (85)
135 PF09849 DUF2076: Uncharacteri 46.3 62 0.0013 29.1 6.2 48 64-114 6-74 (247)
136 TIGR01270 Trp_5_monoox tryptop 46.3 60 0.0013 31.9 6.5 49 173-221 34-84 (464)
137 KOG2663 Acetolactate synthase, 46.1 35 0.00077 31.0 4.5 67 170-236 77-145 (309)
138 COG4747 ACT domain-containing 45.8 71 0.0015 25.8 5.7 57 172-229 71-129 (142)
139 cd04916 ACT_AKiii-YclM-BS_2 AC 45.7 87 0.0019 20.7 7.3 33 173-205 4-39 (66)
140 TIGR01268 Phe4hydrox_tetr phen 44.8 82 0.0018 30.7 7.1 47 175-221 21-68 (436)
141 PRK15422 septal ring assembly 44.1 48 0.001 24.6 4.2 27 90-116 13-39 (79)
142 KOG3582 Mlx interactors and re 41.3 6.9 0.00015 40.0 -0.7 60 50-112 785-849 (856)
143 cd04937 ACT_AKi-DapG-BS_2 ACT 41.3 1.1E+02 0.0024 20.7 6.5 27 173-199 4-33 (64)
144 PRK10820 DNA-binding transcrip 40.3 48 0.001 32.7 5.0 35 172-206 2-36 (520)
145 cd04921 ACT_AKi-HSDH-ThrA-like 38.7 1.3E+02 0.0029 20.9 6.3 26 179-204 13-38 (80)
146 TIGR02079 THD1 threonine dehyd 38.3 2E+02 0.0043 27.4 8.7 63 168-230 323-388 (409)
147 cd04912 ACT_AKiii-LysC-EC-like 37.4 1.5E+02 0.0031 20.9 6.6 31 172-202 3-36 (75)
148 PRK15385 magnesium transport p 37.0 3E+02 0.0065 24.4 9.2 40 168-207 140-181 (225)
149 cd04913 ACT_AKii-LysC-BS-like_ 36.8 1.3E+02 0.0028 20.1 5.6 26 178-203 10-35 (75)
150 cd04891 ACT_AK-LysC-DapG-like_ 35.8 1.2E+02 0.0025 19.3 5.0 27 178-204 9-35 (61)
151 COG0077 PheA Prephenate dehydr 35.3 1.6E+02 0.0035 27.0 7.1 49 173-221 197-246 (279)
152 COG3978 Acetolactate synthase 34.1 2E+02 0.0044 21.5 6.7 59 171-230 4-64 (86)
153 PF14197 Cep57_CLD_2: Centroso 33.6 91 0.002 22.4 4.3 28 88-115 40-67 (69)
154 PF09789 DUF2353: Uncharacteri 33.5 1.5E+02 0.0032 27.7 6.7 53 63-115 38-99 (319)
155 PRK00227 glnD PII uridylyl-tra 33.5 54 0.0012 33.8 4.2 43 171-217 632-674 (693)
156 cd04918 ACT_AK1-AT_2 ACT domai 33.3 1.4E+02 0.0031 20.3 5.2 29 180-208 13-41 (65)
157 PF08826 DMPK_coil: DMPK coile 33.1 1.1E+02 0.0023 21.6 4.5 28 89-116 33-60 (61)
158 smart00338 BRLZ basic region l 33.0 68 0.0015 22.1 3.5 24 94-117 25-48 (65)
159 cd04915 ACT_AK-Ectoine_2 ACT d 32.6 1.7E+02 0.0036 20.1 5.5 27 180-206 14-40 (66)
160 COG0440 IlvH Acetolactate synt 31.2 1.1E+02 0.0024 25.8 5.0 59 172-230 6-66 (163)
161 TIGR00986 3a0801s05tom22 mitoc 31.0 78 0.0017 26.2 4.0 36 65-100 49-84 (145)
162 COG1259 Uncharacterized conser 30.8 1.9E+02 0.004 24.2 6.2 44 178-221 55-99 (151)
163 PRK08818 prephenate dehydrogen 30.5 1.5E+02 0.0033 28.1 6.4 49 170-221 297-346 (370)
164 PLN02317 arogenate dehydratase 30.1 2.5E+02 0.0055 26.9 7.8 44 178-221 291-349 (382)
165 cd04924 ACT_AK-Arch_2 ACT doma 29.6 1.7E+02 0.0036 19.2 7.3 34 172-205 3-39 (66)
166 PHA03386 P10 fibrous body prot 29.5 1.3E+02 0.0028 23.1 4.6 34 84-117 1-34 (94)
167 PRK05771 V-type ATP synthase s 28.3 6.3E+02 0.014 25.5 10.9 57 61-117 49-122 (646)
168 cd04923 ACT_AK-LysC-DapG-like_ 27.0 1.8E+02 0.0039 18.7 6.6 25 179-203 12-36 (63)
169 PRK14637 hypothetical protein; 26.9 3.4E+02 0.0073 22.4 7.2 56 179-234 6-65 (151)
170 PF10393 Matrilin_ccoil: Trime 26.8 1.7E+02 0.0036 19.6 4.3 27 90-116 18-44 (47)
171 COG2716 GcvR Glycine cleavage 26.7 1.7E+02 0.0037 25.0 5.4 64 168-231 90-160 (176)
172 PF00170 bZIP_1: bZIP transcri 26.6 1.1E+02 0.0023 21.1 3.6 18 96-113 27-44 (64)
173 PHA00003 B internal scaffoldin 26.5 91 0.002 24.6 3.4 23 53-75 53-75 (120)
174 KOG4005 Transcription factor X 26.0 3.4E+02 0.0074 24.5 7.3 23 52-74 59-82 (292)
175 cd04932 ACT_AKiii-LysC-EC_1 AC 25.9 2.5E+02 0.0054 20.0 6.6 26 178-203 12-37 (75)
176 PF05295 Luciferase_N: Lucifer 25.7 15 0.00033 27.1 -0.9 16 1-21 29-44 (82)
177 cd04933 ACT_AK1-AT_1 ACT domai 25.6 2.7E+02 0.0057 20.2 6.7 32 172-203 3-37 (78)
178 PF08317 Spc7: Spc7 kinetochor 24.7 2.1E+02 0.0046 26.4 6.2 29 61-89 183-211 (325)
179 PF13887 MRF_C1: Myelin gene r 23.7 1.6E+02 0.0034 18.6 3.4 31 85-115 4-34 (36)
180 PRK08639 threonine dehydratase 23.6 3.9E+02 0.0085 25.4 8.0 66 167-232 333-401 (420)
181 PF02577 DNase-RNase: Bifuncti 23.2 2.6E+02 0.0056 22.3 5.7 42 180-221 51-93 (135)
182 COG1707 ACT domain-containing 23.1 2.2E+02 0.0047 24.5 5.3 49 172-220 4-52 (218)
183 COG3283 TyrR Transcriptional r 22.9 1.2E+02 0.0025 29.4 4.1 57 172-230 2-58 (511)
184 PF10359 Fmp27_WPPW: RNA pol I 22.7 4.4E+02 0.0096 25.7 8.3 63 56-118 164-230 (475)
185 PF10369 ALS_ss_C: Small subun 21.8 2.1E+02 0.0047 20.5 4.5 32 170-203 4-35 (75)
186 cd04934 ACT_AK-Hom3_1 CT domai 21.4 3.1E+02 0.0066 19.4 6.4 24 180-203 14-37 (73)
187 TIGR01124 ilvA_2Cterm threonin 21.4 4.9E+02 0.011 25.6 8.3 61 168-230 323-385 (499)
188 PRK12483 threonine dehydratase 21.3 4.7E+02 0.01 26.0 8.2 62 168-231 343-407 (521)
189 PF14992 TMCO5: TMCO5 family 20.6 1.6E+02 0.0034 27.1 4.3 26 88-113 144-169 (280)
190 PF04508 Pox_A_type_inc: Viral 20.5 1.6E+02 0.0035 16.7 2.8 17 97-113 3-19 (23)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.41 E-value=3.9e-13 Score=93.61 Aligned_cols=54 Identities=37% Similarity=0.647 Sum_probs=50.7
Q ss_pred chhhhcchhHHHHHHHHHHHHHHHhccCCCC---CCCCcchHHHHHHHHHHHHHHHH
Q 025727 51 SAASKNIVSERNRRKKLNERLFALRSVVPNI---SKMDKASIIKDAIDYIQELHEQE 104 (249)
Q Consensus 51 ~~~~~h~~~ER~RR~~in~~~~~LrslvP~~---~k~dKasIl~~ai~yI~~Lq~~~ 104 (249)
..+..|+..||+||++||..|..|+++||.. .|+||++||..|++||+.|+.++
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999997 89999999999999999999765
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.40 E-value=4e-13 Score=92.71 Aligned_cols=50 Identities=40% Similarity=0.656 Sum_probs=47.1
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHhccCCCC-----CCCCcchHHHHHHHHHHHHH
Q 025727 52 AASKNIVSERNRRKKLNERLFALRSVVPNI-----SKMDKASIIKDAIDYIQELH 101 (249)
Q Consensus 52 ~~~~h~~~ER~RR~~in~~~~~LrslvP~~-----~k~dKasIl~~ai~yI~~Lq 101 (249)
+|..|+..||+||++||+.|..|+.+||.. .|.+|++||..||+||++||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999985 78999999999999999997
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.34 E-value=1.8e-12 Score=88.35 Aligned_cols=49 Identities=43% Similarity=0.664 Sum_probs=45.1
Q ss_pred chhHHHHHHHHHHHHHHHhccCCC---CCCCCcchHHHHHHHHHHHHHHHHH
Q 025727 57 IVSERNRRKKLNERLFALRSVVPN---ISKMDKASIIKDAIDYIQELHEQEK 105 (249)
Q Consensus 57 ~~~ER~RR~~in~~~~~LrslvP~---~~k~dKasIl~~ai~yI~~Lq~~~~ 105 (249)
+..||+||++||+.|..|+++||. ..|.+|++||..||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999995 6799999999999999999998764
No 4
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.93 E-value=7.3e-10 Score=93.65 Aligned_cols=65 Identities=31% Similarity=0.520 Sum_probs=57.0
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHhccCCCC-------CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025727 52 AASKNIVSERNRRKKLNERLFALRSVVPNI-------SKMDKASIIKDAIDYIQELHEQEKRIRDEIMELES 116 (249)
Q Consensus 52 ~~~~h~~~ER~RR~~in~~~~~LrslvP~~-------~k~dKasIl~~ai~yI~~Lq~~~~~L~~~~~~l~s 116 (249)
+|..|..+||+||+.||..+..|..|||.+ -|.+||-||.++|+||.+|.+++...+.+...|..
T Consensus 62 rr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k 133 (229)
T KOG1319|consen 62 RRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRK 133 (229)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999964 37889999999999999999888777777666643
No 5
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.92 E-value=1.8e-09 Score=101.57 Aligned_cols=55 Identities=33% Similarity=0.571 Sum_probs=50.5
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHhccCCCC----CCCCcchHHHHHHHHHHHHHHHHHH
Q 025727 52 AASKNIVSERNRRKKLNERLFALRSVVPNI----SKMDKASIIKDAIDYIQELHEQEKR 106 (249)
Q Consensus 52 ~~~~h~~~ER~RR~~in~~~~~LrslvP~~----~k~dKasIl~~ai~yI~~Lq~~~~~ 106 (249)
+|..|++.||+||.+||+++.+|..|||.+ .+..|..||..+++||+.||+..++
T Consensus 233 Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 233 KRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999986 4667999999999999999887763
No 6
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.49 E-value=5.1e-07 Score=79.72 Aligned_cols=67 Identities=25% Similarity=0.407 Sum_probs=54.3
Q ss_pred CCCchhhhcchhHHHHHHHHHHHHHHHhccCCCC--CCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025727 48 AASSAASKNIVSERNRRKKLNERLFALRSVVPNI--SKMD-KASIIKDAIDYIQELHEQEKRIRDEIMEL 114 (249)
Q Consensus 48 ~~~~~~~~h~~~ER~RR~~in~~~~~LrslvP~~--~k~d-KasIl~~ai~yI~~Lq~~~~~L~~~~~~l 114 (249)
.....|..|+..||+||..|++.|..|+.+||.. .+.. .++||..|..||+.|+.+.......++.|
T Consensus 55 ~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l 124 (232)
T KOG2483|consen 55 SAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDL 124 (232)
T ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 3456789999999999999999999999999985 3333 68999999999999977665555544433
No 7
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.40 E-value=2.6e-06 Score=62.75 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=53.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccc-------chhhhhhhhhhhh
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRFL-------FFSLFFSTYHHQL 234 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~~-------~~~~l~~~~~~~~ 234 (249)
+|+|.|+++||+|.+|..+|-.+|++|.+|.|++.|+++..+|.|.-.++ ....++..+..++
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al 72 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAI 72 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999965543 3445555555443
No 8
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.39 E-value=1.9e-07 Score=83.40 Aligned_cols=54 Identities=24% Similarity=0.473 Sum_probs=48.7
Q ss_pred chhhhcchhHHHHHHHHHHHHHHHhccCCC--------CCCCCcchHHHHHHHHHHHHHHHH
Q 025727 51 SAASKNIVSERNRRKKLNERLFALRSVVPN--------ISKMDKASIIKDAIDYIQELHEQE 104 (249)
Q Consensus 51 ~~~~~h~~~ER~RR~~in~~~~~LrslvP~--------~~k~dKasIl~~ai~yI~~Lq~~~ 104 (249)
.++..|.+.||+||++||+.|.+|++|||. .+|++||.||.-|++|++.||...
T Consensus 31 ~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~ 92 (250)
T KOG4304|consen 31 YRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQ 92 (250)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 467888999999999999999999999994 278999999999999999998653
No 9
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.37 E-value=2.9e-06 Score=62.00 Aligned_cols=49 Identities=16% Similarity=0.339 Sum_probs=46.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecc
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRF 220 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~ 220 (249)
+|+|.+.+++|+|.+|.++|..+||+|..|.|++.|+++..+|.|.-..
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~ 51 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQL 51 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCC
Confidence 6899999999999999999999999999999999999999999997543
No 10
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.27 E-value=6.5e-06 Score=60.59 Aligned_cols=49 Identities=6% Similarity=0.162 Sum_probs=45.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE--eeCCEEEEEEEEEecc
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANIT--AVAGRLLKTAFIEVRF 220 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is--~~~~~vl~ti~vev~~ 220 (249)
+|+|.|.+|+|+|.+|.++|..+|++|..|.|+ +.|+++..+|.+..++
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g 52 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDG 52 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCC
Confidence 589999999999999999999999999999999 9999999999995444
No 11
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.23 E-value=1.4e-06 Score=88.31 Aligned_cols=61 Identities=25% Similarity=0.392 Sum_probs=53.1
Q ss_pred CCCCCCCCchhhhcchhHHHHHHHHHHHHHHHhccCCCC----CCCCcchHHHHHHHHHHHHHHH
Q 025727 43 SSPDGAASSAASKNIVSERNRRKKLNERLFALRSVVPNI----SKMDKASIIKDAIDYIQELHEQ 103 (249)
Q Consensus 43 ssp~~~~~~~~~~h~~~ER~RR~~in~~~~~LrslvP~~----~k~dKasIl~~ai~yI~~Lq~~ 103 (249)
..+++.....|..|+.+||+||++||..+.+|.+|||.+ -|+||-.||..||.+|+.+++.
T Consensus 11 ~~~d~k~r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 11 AESDSKDRKKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred ccccchhhhccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 344444555689999999999999999999999999985 5999999999999999988864
No 12
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.22 E-value=6.8e-06 Score=60.26 Aligned_cols=49 Identities=24% Similarity=0.441 Sum_probs=45.3
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEEEec
Q 025727 171 LVVSVTCSKRTDTMVKLCEAFESLKLKIITANITA-VAGRLLKTAFIEVR 219 (249)
Q Consensus 171 ~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~-~~~~vl~ti~vev~ 219 (249)
++++|.|++++|+|.+|..+|..+||+|.+|.|++ .+|.++.+|.|.-.
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~ 50 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA 50 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC
Confidence 46899999999999999999999999999999996 99999999999643
No 13
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.05 E-value=4.7e-05 Score=55.01 Aligned_cols=48 Identities=23% Similarity=0.295 Sum_probs=43.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEEec
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAV-AGRLLKTAFIEVR 219 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~-~~~vl~ti~vev~ 219 (249)
.|.|.|++++|+|.+|..+|..+||+|++|.+.+. +|.++.+|.+.-.
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~ 51 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDP 51 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECC
Confidence 57899999999999999999999999999999877 7999999999643
No 14
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.94 E-value=5.2e-06 Score=75.11 Aligned_cols=56 Identities=27% Similarity=0.482 Sum_probs=48.8
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHhccCCC--CCCCCcchHHHHHHHHHHHHHHHHHHH
Q 025727 52 AASKNIVSERNRRKKLNERLFALRSVVPN--ISKMDKASIIKDAIDYIQELHEQEKRI 107 (249)
Q Consensus 52 ~~~~h~~~ER~RR~~in~~~~~LrslvP~--~~k~dKasIl~~ai~yI~~Lq~~~~~L 107 (249)
+|...+.-||+|=+-||..|..||+|+|. +.|.+||.||+.+.+||.+|..+.-+|
T Consensus 60 RReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 60 RREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred HHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 34555788999999999999999999997 699999999999999999997765443
No 15
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.92 E-value=6.8e-05 Score=54.52 Aligned_cols=47 Identities=15% Similarity=0.291 Sum_probs=44.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEe
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEV 218 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev 218 (249)
+|+|.+++++|+|.+|..+|..+|++|+.|.+.+.++.++.+|.|.-
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d 48 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRD 48 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEc
Confidence 58999999999999999999999999999999999999999999864
No 16
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.82 E-value=0.00023 Score=51.90 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=55.8
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecccchhhhhhhhhhhh
Q 025727 170 ILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRFLFFSLFFSTYHHQL 234 (249)
Q Consensus 170 ~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~~~~~~l~~~~~~~~ 234 (249)
.++|++.++++||++..|..+|.++|.+|+.++.++.++.+...+.++++++.+..+++.+....
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~l~ 66 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPEDSLERLESALEELA 66 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcccHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999777777777766543
No 17
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.74 E-value=8.1e-05 Score=65.97 Aligned_cols=63 Identities=29% Similarity=0.382 Sum_probs=51.5
Q ss_pred hhhhcchhHHHHHHHHHHHHHHH-hccCCCC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025727 52 AASKNIVSERNRRKKLNERLFAL-RSVVPNI-SKMDKASIIKDAIDYIQELHEQEKRIRDEIMEL 114 (249)
Q Consensus 52 ~~~~h~~~ER~RR~~in~~~~~L-rslvP~~-~k~dKasIl~~ai~yI~~Lq~~~~~L~~~~~~l 114 (249)
+|....+.||+|=+|+|+.|.+| |.-.+|. .+..|+.||..||+||..||.-++++-+.-.-+
T Consensus 118 RRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~ 182 (284)
T KOG3960|consen 118 RRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEKGL 182 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 34455689999999999999999 6667776 557999999999999999998888876654433
No 18
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.72 E-value=1.5e-05 Score=81.45 Aligned_cols=65 Identities=25% Similarity=0.567 Sum_probs=60.6
Q ss_pred chhhhcchhHHHHHHHHHHHHHHHhccCCCC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025727 51 SAASKNIVSERNRRKKLNERLFALRSVVPNI-SKMDKASIIKDAIDYIQELHEQEKRIRDEIMELE 115 (249)
Q Consensus 51 ~~~~~h~~~ER~RR~~in~~~~~LrslvP~~-~k~dKasIl~~ai~yI~~Lq~~~~~L~~~~~~l~ 115 (249)
.+|..|+.+||+-|..||+++.+|+.+||.. .|..|..+|..||+||++|+...+.++.+.+.++
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 5799999999999999999999999999985 8999999999999999999999999888877766
No 19
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.66 E-value=0.00049 Score=48.49 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=45.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccc
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRFL 221 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~~ 221 (249)
.|.|.|++++|+|.+|+.+|.++|++|.++.+.+.++.++.+|++.-..+
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~ 51 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADG 51 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCC
Confidence 57889999999999999999999999999999999999999999886443
No 20
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.61 E-value=0.00063 Score=49.75 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=54.9
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecccchhhhhhhhhhhh
Q 025727 171 LVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRFLFFSLFFSTYHHQL 234 (249)
Q Consensus 171 ~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~~~~~~l~~~~~~~~ 234 (249)
++|.+.|++++|+...|.++|.++|..|+.++....++.++..+.++++......|++.+....
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~~~~~~l~~~l~~~~ 65 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSWDAIAKLEAALPGLA 65 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEeccccHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999998888887545566666655543
No 21
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.59 E-value=0.00016 Score=54.06 Aligned_cols=54 Identities=22% Similarity=0.574 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhccCCCC------CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025727 64 RKKLNERLFALRSVVPNI------SKMDKASIIKDAIDYIQELHEQEKRIRDEIMELESG 117 (249)
Q Consensus 64 R~~in~~~~~LrslvP~~------~k~dKasIl~~ai~yI~~Lq~~~~~L~~~~~~l~s~ 117 (249)
-++|++.+..|+.|+|.. .|.+-+-+|++|..||+.|+.++..|.+.+.+|-..
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 378999999999999973 445566789999999999999999999999987654
No 22
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.51 E-value=0.00095 Score=48.22 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=43.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE-eeCCEEEEEEEEEecc
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANIT-AVAGRLLKTAFIEVRF 220 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is-~~~~~vl~ti~vev~~ 220 (249)
-|-|.|++++|+|++|..+|..+||+|+.|++. +.+|.++.+|.|.-.+
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~ 52 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWK 52 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCC
Confidence 367889999999999999999999999999876 6689999999987543
No 23
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.50 E-value=0.00058 Score=49.28 Aligned_cols=47 Identities=11% Similarity=0.217 Sum_probs=42.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEe
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEV 218 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev 218 (249)
.|.|.+++++|+|.+|..+|.++|++|++|.+.+.++.++.+|++.-
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~ 49 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD 49 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEEC
Confidence 46778999999999999999999999999999999898888999863
No 24
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.48 E-value=0.00012 Score=64.49 Aligned_cols=57 Identities=25% Similarity=0.360 Sum_probs=49.6
Q ss_pred CchhhhcchhHHHHHHHHHHHHHHHhccCCC----CCCCCcchHHHHHHHHHHHHHHHHHH
Q 025727 50 SSAASKNIVSERNRRKKLNERLFALRSVVPN----ISKMDKASIIKDAIDYIQELHEQEKR 106 (249)
Q Consensus 50 ~~~~~~h~~~ER~RR~~in~~~~~LrslvP~----~~k~dKasIl~~ai~yI~~Lq~~~~~ 106 (249)
...+..++..||+|=+.+|..|..||.+||. ..|.+|..+|.-||.||++|++-++.
T Consensus 107 ~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~ 167 (228)
T KOG4029|consen 107 SAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLAT 167 (228)
T ss_pred hhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcc
Confidence 3456777888999999999999999999996 46889999999999999999966544
No 25
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=97.39 E-value=0.0019 Score=45.02 Aligned_cols=49 Identities=22% Similarity=0.317 Sum_probs=43.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecc
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRF 220 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~ 220 (249)
.|.|.|++++|+|.+|+.+|.++|+.|.++.+.+.++.....|++.-.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~ 50 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD 50 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCC
Confidence 4778999999999999999999999999999998888777788887655
No 26
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=97.13 E-value=0.0047 Score=42.44 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=34.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAG 208 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~ 208 (249)
.|.|.|+++||.|.+|..+|.++|++|.++.+.+.++
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~ 38 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKD 38 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCC
Confidence 5788999999999999999999999999999998887
No 27
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.11 E-value=0.0024 Score=66.55 Aligned_cols=67 Identities=10% Similarity=0.151 Sum_probs=55.6
Q ss_pred ceeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccc------chhhhhhhhhhhh
Q 025727 168 EKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRFL------FFSLFFSTYHHQL 234 (249)
Q Consensus 168 ~~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~~------~~~~l~~~~~~~~ 234 (249)
+.--+|+|.|.+++|+|.+|.++|..+||+|.+|.|+|.|+++..+|.|.-..+ ....++..+...+
T Consensus 806 ~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~~~~~~~l~~~L~~~l 878 (884)
T PRK05007 806 DRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALNEELQQELRQRLTEAL 878 (884)
T ss_pred CCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCCHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999999999999999999999999965433 3445655555444
No 28
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.02 E-value=0.0049 Score=64.37 Aligned_cols=72 Identities=18% Similarity=0.213 Sum_probs=59.1
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccc-------chhhhhhhhhhhhhhhccc
Q 025727 169 KILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRFL-------FFSLFFSTYHHQLFLFKPK 240 (249)
Q Consensus 169 ~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~~-------~~~~l~~~~~~~~~~~~~~ 240 (249)
+...|.|.+.+++|+|.+|..+|..+||+|..|.|+|.+++++.+|.|.-..+ ....++..+...+....+|
T Consensus 813 ~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~~~~~ 891 (895)
T PRK00275 813 PVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCSRLQDAICEQLDARNEK 891 (895)
T ss_pred CeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHhccccc
Confidence 45689999999999999999999999999999999999999999999975433 3345666666665555544
No 29
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=96.96 E-value=0.0074 Score=43.72 Aligned_cols=64 Identities=9% Similarity=0.016 Sum_probs=52.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC------CEEEEEEEEEeccc-chhhhhhhhhhhhh
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVA------GRLLKTAFIEVRFL-FFSLFFSTYHHQLF 235 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~------~~vl~ti~vev~~~-~~~~l~~~~~~~~~ 235 (249)
+|.+.|++++|++.+|.++|.++|++|.+.+..+.+ +.+...+.+.++.. .+..+...+..+..
T Consensus 1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l~~ 71 (81)
T cd04869 1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELCD 71 (81)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999999999999998887 66777777777754 46667666655443
No 30
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.94 E-value=0.0039 Score=46.48 Aligned_cols=62 Identities=13% Similarity=0.213 Sum_probs=52.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecc-c-chhhhhhhhhh
Q 025727 171 LVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRF-L-FFSLFFSTYHH 232 (249)
Q Consensus 171 ~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~-~-~~~~l~~~~~~ 232 (249)
++|.+.|+++||++..|.++|-.+|++|++.+..+.++.+...+.+.... + .+..|++.+..
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~~~~~L~~~l~~ 65 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNLDFAELQEELEE 65 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 57999999999999999999999999999999888888888888888876 2 45666655544
No 31
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.91 E-value=0.012 Score=42.85 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=44.2
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEeccc
Q 025727 170 ILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAV--AGRLLKTAFIEVRFL 221 (249)
Q Consensus 170 ~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~--~~~vl~ti~vev~~~ 221 (249)
.+.|+|.|.+++|+|.+|..++.+.|+.|.+.++... ++.+...|.+++.+.
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~ 59 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDL 59 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSH
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCH
Confidence 4678899999999999999999999999999999984 678888999999764
No 32
>PRK00194 hypothetical protein; Validated
Probab=96.81 E-value=0.0062 Score=45.38 Aligned_cols=64 Identities=9% Similarity=0.186 Sum_probs=52.0
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecc-c-chhhhhhhhhhh
Q 025727 170 ILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRF-L-FFSLFFSTYHHQ 233 (249)
Q Consensus 170 ~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~-~-~~~~l~~~~~~~ 233 (249)
.++|.+.|+++||++.+|..+|-++|++|+..+..+.++.+...+.+.... . ....|.+.+..+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l 68 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISESKKDFAELKEELEEL 68 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCCCCCHHHHHHHHHHH
Confidence 468999999999999999999999999999999888888877777877765 2 345555554443
No 33
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.80 E-value=0.0096 Score=43.02 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=54.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccc-chhhhhhhhhhhh
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRFL-FFSLFFSTYHHQL 234 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~~-~~~~l~~~~~~~~ 234 (249)
+|.+.+.++||+..+|.++|-++|++|...+.++.++.+...+.+.+..+ .+..|++.+....
T Consensus 1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~~l~ 64 (75)
T cd04870 1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLFKA 64 (75)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999888888888775 5677777766544
No 34
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.59 E-value=0.016 Score=60.48 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=51.6
Q ss_pred eeEEEE-ecceeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEec
Q 025727 160 ELRVKT-MGEKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVR 219 (249)
Q Consensus 160 eV~V~~-~g~~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~ 219 (249)
.|.+.. .+.+-.+|.|.+.+++|+|.+|..+|..+|++|..|.|+|.+++++.+|.|.-.
T Consensus 785 ~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~ 845 (869)
T PRK04374 785 RVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDE 845 (869)
T ss_pred eEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC
Confidence 455443 233557899999999999999999999999999999999999999999999743
No 35
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.47 E-value=0.027 Score=40.35 Aligned_cols=63 Identities=10% Similarity=0.179 Sum_probs=45.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEEEeccc--chhhhhhhhhhhh
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITA--VAGRLLKTAFIEVRFL--FFSLFFSTYHHQL 234 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~--~~~~vl~ti~vev~~~--~~~~l~~~~~~~~ 234 (249)
+|.+.|++++|++.+|.++|-++|+.|+..+..+ .++.+.-.+.+..+.. .+..|.+.+....
T Consensus 1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~l~ 67 (74)
T cd04875 1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVA 67 (74)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999999999999998875 3343333445555532 3566666655443
No 36
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.44 E-value=0.032 Score=39.50 Aligned_cols=49 Identities=6% Similarity=0.053 Sum_probs=42.4
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEEeccc
Q 025727 173 VSVTCSKRTDTMVKLCEAFESLKLKIITANITAV-AGRLLKTAFIEVRFL 221 (249)
Q Consensus 173 I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~-~~~vl~ti~vev~~~ 221 (249)
|.|.+.+++|+|.+|+.+|.+.|..|.+.++... ++.....|.+++.+.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~ 51 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSE 51 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCH
Confidence 6788999999999999999999999999988776 466667888888764
No 37
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.41 E-value=0.026 Score=39.00 Aligned_cols=48 Identities=19% Similarity=0.197 Sum_probs=38.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCEEEEEEEEEecc
Q 025727 173 VSVTCSKRTDTMVKLCEAFESLKLKIITANITAV-----AGRLLKTAFIEVRF 220 (249)
Q Consensus 173 I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~-----~~~vl~ti~vev~~ 220 (249)
+.|.+++++|.|.+|+.+|.+.|++|.+...... .+.....|.+++.+
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~ 53 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRG 53 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCC
Confidence 3578899999999999999999999998887654 35556667777755
No 38
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.40 E-value=0.021 Score=59.41 Aligned_cols=50 Identities=18% Similarity=0.360 Sum_probs=47.0
Q ss_pred ceeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEE
Q 025727 168 EKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIE 217 (249)
Q Consensus 168 ~~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~ve 217 (249)
.+...|.|.|.+++|+|.+|..+|..+||+|.+|.|+|.+++++.+|.|.
T Consensus 784 ~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~ 833 (856)
T PRK03059 784 GQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID 833 (856)
T ss_pred CCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEc
Confidence 34578999999999999999999999999999999999999999999994
No 39
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.36 E-value=0.025 Score=59.40 Aligned_cols=60 Identities=18% Similarity=0.333 Sum_probs=51.2
Q ss_pred eeEEEEe-cceeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEec
Q 025727 160 ELRVKTM-GEKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVR 219 (249)
Q Consensus 160 eV~V~~~-g~~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~ 219 (249)
.|.+... .+...+|.|.|.+++|+|.+|..+|.++|++|.+|.|.|.++++..+|.|.-.
T Consensus 832 ~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~ 892 (931)
T PRK05092 832 RVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDL 892 (931)
T ss_pred EEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCC
Confidence 4444332 23457899999999999999999999999999999999999999999999753
No 40
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.34 E-value=0.016 Score=60.24 Aligned_cols=61 Identities=15% Similarity=0.259 Sum_probs=51.8
Q ss_pred eeEEEE-ecceeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecc
Q 025727 160 ELRVKT-MGEKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRF 220 (249)
Q Consensus 160 eV~V~~-~g~~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~ 220 (249)
.|.+.. .++.--+|+|.+.++||+|.+|.++|.++|++|.+|.|+|.++++..+|.|.-..
T Consensus 772 ~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~ 833 (854)
T PRK01759 772 EVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQ 833 (854)
T ss_pred EEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCC
Confidence 444432 2344578999999999999999999999999999999999999999999997543
No 41
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.10 E-value=0.02 Score=59.02 Aligned_cols=53 Identities=13% Similarity=0.234 Sum_probs=48.9
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccc
Q 025727 169 KILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRFL 221 (249)
Q Consensus 169 ~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~~ 221 (249)
+..+|.|.|.++||+|.+|..+|..+|++|.+|.|+|.++.++.+|.|.-.++
T Consensus 706 ~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g 758 (774)
T PRK03381 706 DATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAG 758 (774)
T ss_pred CeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCC
Confidence 35789999999999999999999999999999999999999999999975543
No 42
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.09 E-value=0.044 Score=56.52 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=47.4
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEec
Q 025727 169 KILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVR 219 (249)
Q Consensus 169 ~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~ 219 (249)
+...|.|.|.+++|+|++|+.+|..+|++|+.|++.+.+|.++.+|.|.-.
T Consensus 598 ~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~ 648 (774)
T PRK03381 598 HMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPR 648 (774)
T ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC
Confidence 457899999999999999999999999999999999999999999999753
No 43
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=95.96 E-value=0.038 Score=57.43 Aligned_cols=54 Identities=19% Similarity=0.183 Sum_probs=48.6
Q ss_pred ceeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE-eeCCEEEEEEEEEeccc
Q 025727 168 EKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANIT-AVAGRLLKTAFIEVRFL 221 (249)
Q Consensus 168 ~~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is-~~~~~vl~ti~vev~~~ 221 (249)
.+...|.|.+.+++|+|.+|+.+|..+||+|++|.|. +.+|.++.+|.|.-..+
T Consensus 666 ~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g 720 (850)
T TIGR01693 666 SGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFG 720 (850)
T ss_pred CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCC
Confidence 3456899999999999999999999999999999998 88999999999976543
No 44
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.85 E-value=0.043 Score=39.03 Aligned_cols=50 Identities=16% Similarity=0.262 Sum_probs=44.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccc
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRFL 221 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~~ 221 (249)
+|.|.|+++.|+=.+|++.+-+.||.|+.+.+++.|..-+..|.|.....
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~ 51 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPP 51 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCC
Confidence 58999999999999999999999999999999999998777887766543
No 45
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=95.84 E-value=0.044 Score=56.98 Aligned_cols=62 Identities=18% Similarity=0.275 Sum_probs=52.5
Q ss_pred eeEEEEe-cceeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccc
Q 025727 160 ELRVKTM-GEKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRFL 221 (249)
Q Consensus 160 eV~V~~~-g~~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~~ 221 (249)
.|.+... .+.-.+|.|.|.++||+|.+|.++|..+|++|.+|.|+|.++++..+|.+....+
T Consensus 768 ~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g 830 (850)
T TIGR01693 768 RVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFG 830 (850)
T ss_pred eEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCC
Confidence 4555432 2345789999999999999999999999999999999999999999999976443
No 46
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=95.74 E-value=0.054 Score=56.43 Aligned_cols=51 Identities=18% Similarity=0.269 Sum_probs=46.5
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEEEec
Q 025727 169 KILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITA-VAGRLLKTAFIEVR 219 (249)
Q Consensus 169 ~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~-~~~~vl~ti~vev~ 219 (249)
+...|.|.|++++|+|.+|..+|..+||+|+.|.|.+ .+|.++.+|.|.-.
T Consensus 676 ~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~ 727 (854)
T PRK01759 676 GGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTEL 727 (854)
T ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCC
Confidence 4568999999999999999999999999999999866 89999999999643
No 47
>PRK05007 PII uridylyl-transferase; Provisional
Probab=95.54 E-value=0.073 Score=55.69 Aligned_cols=52 Identities=13% Similarity=0.136 Sum_probs=45.6
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEEecc
Q 025727 169 KILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAV-AGRLLKTAFIEVRF 220 (249)
Q Consensus 169 ~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~-~~~vl~ti~vev~~ 220 (249)
+...|.|.|++++|+|..|+.+|..+||+|+.|.|.+. +|.++.+|.|.-.+
T Consensus 700 ~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~ 752 (884)
T PRK05007 700 GGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPD 752 (884)
T ss_pred CeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCC
Confidence 45789999999999999999999999999999997755 55999999996443
No 48
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=95.36 E-value=0.056 Score=56.60 Aligned_cols=51 Identities=20% Similarity=0.161 Sum_probs=46.1
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEE-EeeCCEEEEEEEEEec
Q 025727 169 KILVVSVTCSKRTDTMVKLCEAFESLKLKIITANI-TAVAGRLLKTAFIEVR 219 (249)
Q Consensus 169 ~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~i-s~~~~~vl~ti~vev~ 219 (249)
+...|.|.|.+++|+|++|+.+|..+||+|+.|.| |+.+|.++.+|.|.-.
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~ 754 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDD 754 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCC
Confidence 46789999999999999999999999999999996 7788999999999643
No 49
>PRK03059 PII uridylyl-transferase; Provisional
Probab=95.29 E-value=0.084 Score=55.08 Aligned_cols=52 Identities=23% Similarity=0.286 Sum_probs=46.8
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEE-EeeCCEEEEEEEEEecc
Q 025727 169 KILVVSVTCSKRTDTMVKLCEAFESLKLKIITANI-TAVAGRLLKTAFIEVRF 220 (249)
Q Consensus 169 ~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~i-s~~~~~vl~ti~vev~~ 220 (249)
+..-|.|.|++++|+|++|..+|..+||+|+.|.| ++.+|.++.+|.|.-..
T Consensus 677 ~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~ 729 (856)
T PRK03059 677 EGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPE 729 (856)
T ss_pred CeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCC
Confidence 45789999999999999999999999999999998 67899999999996443
No 50
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.047 Score=56.00 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=53.2
Q ss_pred eeeEEEEec-ceeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccc
Q 025727 159 LELRVKTMG-EKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRFL 221 (249)
Q Consensus 159 ~eV~V~~~g-~~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~~ 221 (249)
|.|.+.... .+.-++++.+.+++|+|..|..+|..++|+|.+|.|+|+|.++..+|.|..-.+
T Consensus 779 p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~ 842 (867)
T COG2844 779 PRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADG 842 (867)
T ss_pred CceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEecccc
Confidence 455554322 235689999999999999999999999999999999999999999999986554
No 51
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=95.14 E-value=0.079 Score=35.63 Aligned_cols=51 Identities=10% Similarity=0.034 Sum_probs=39.8
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEEecccch
Q 025727 173 VSVTCSKRTDTMVKLCEAFESLKLKIITANITAVA-GRLLKTAFIEVRFLFF 223 (249)
Q Consensus 173 I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~-~~vl~ti~vev~~~~~ 223 (249)
|.+.+++++|.|.+|+.+|.+.|++|.+..+...+ +..+..|.++.-+.+.
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~ 52 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAK 52 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHH
Confidence 35678899999999999999999999888876655 6667777766543333
No 52
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.05 E-value=0.15 Score=36.02 Aligned_cols=50 Identities=18% Similarity=0.239 Sum_probs=40.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEEeccc
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAV-AGRLLKTAFIEVRFL 221 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~-~~~vl~ti~vev~~~ 221 (249)
.+.|.+.+++|.+.+|+.+|.+.|++|...+.+.. ++.....|.+++.+.
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~ 52 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM 52 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch
Confidence 47788999999999999999999999999887654 455556777776553
No 53
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=94.93 E-value=0.14 Score=36.70 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=37.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecc
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRF 220 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~ 220 (249)
.|.|.|.+++|++.+|+.++.+.+..+.+.++.+. +. -.|.+++.+
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v~~ 47 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPTIE 47 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEecC
Confidence 47899999999999999999999999999998775 44 335555553
No 54
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=94.86 E-value=0.24 Score=32.74 Aligned_cols=48 Identities=19% Similarity=0.244 Sum_probs=38.0
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEEecc
Q 025727 173 VSVTCSKRTDTMVKLCEAFESLKLKIITANITAVA-GRLLKTAFIEVRF 220 (249)
Q Consensus 173 I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~-~~vl~ti~vev~~ 220 (249)
|.+.|.+++|.+.+|+.+|.+.++++.+..+...+ +.....|.+++..
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 49 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVRD 49 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEECC
Confidence 46778899999999999999999999999887765 4444556666543
No 55
>PRK04435 hypothetical protein; Provisional
Probab=94.68 E-value=0.26 Score=40.61 Aligned_cols=55 Identities=24% Similarity=0.279 Sum_probs=46.4
Q ss_pred cceeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEEEeccc
Q 025727 167 GEKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITA-VAGRLLKTAFIEVRFL 221 (249)
Q Consensus 167 g~~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~-~~~~vl~ti~vev~~~ 221 (249)
.++.+.|.+.+.+++|+|.+|+.+|.+.|++|.+.+.+. .+|....+|.+++.+.
T Consensus 66 ~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~ 121 (147)
T PRK04435 66 KGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM 121 (147)
T ss_pred CCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh
Confidence 467899999999999999999999999999999988654 3566667888887653
No 56
>PRK05092 PII uridylyl-transferase; Provisional
Probab=94.65 E-value=0.13 Score=54.22 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=45.8
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEEEec
Q 025727 169 KILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITA-VAGRLLKTAFIEVR 219 (249)
Q Consensus 169 ~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~-~~~~vl~ti~vev~ 219 (249)
+...|.|.|.+++|+|.+|+.+|..+|++|+.|.|.+ .+|.++.+|.|.-.
T Consensus 731 ~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~ 782 (931)
T PRK05092 731 GVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDA 782 (931)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECC
Confidence 4678999999999999999999999999999999776 78999999998643
No 57
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=94.59 E-value=0.27 Score=30.70 Aligned_cols=35 Identities=11% Similarity=0.229 Sum_probs=30.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC
Q 025727 173 VSVTCSKRTDTMVKLCEAFESLKLKIITANITAVA 207 (249)
Q Consensus 173 I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~ 207 (249)
|.+.|+..+|.+.+|+.+|...|+.|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46788889999999999999999999999876654
No 58
>PRK04374 PII uridylyl-transferase; Provisional
Probab=94.40 E-value=0.17 Score=53.02 Aligned_cols=53 Identities=11% Similarity=0.061 Sum_probs=47.1
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-eCCEEEEEEEEEeccc
Q 025727 169 KILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITA-VAGRLLKTAFIEVRFL 221 (249)
Q Consensus 169 ~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~-~~~~vl~ti~vev~~~ 221 (249)
+...|.|.|.+++|+|++|+.+|..+||+|+.|.|.+ .+|.++.+|.|.-..+
T Consensus 689 ~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~ 742 (869)
T PRK04374 689 DALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDT 742 (869)
T ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCC
Confidence 4568899999999999999999999999999999875 7999999999975444
No 59
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.18 E-value=0.44 Score=32.67 Aligned_cols=36 Identities=8% Similarity=0.047 Sum_probs=32.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVA 207 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~ 207 (249)
.|.+.|.+++|.|.+|+..|.+.++.|.+.+....+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~ 37 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER 37 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC
Confidence 477889999999999999999999999998877653
No 60
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.17 E-value=0.14 Score=34.97 Aligned_cols=46 Identities=11% Similarity=0.084 Sum_probs=34.7
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEe
Q 025727 173 VSVTCSKRTDTMVKLCEAFESLKLKIITANITAVA--GRLLKTAFIEV 218 (249)
Q Consensus 173 I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~--~~vl~ti~vev 218 (249)
|.+.-++++|.|.+++.+|.+.|+.|.+....... +.....|.++.
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~ 49 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED 49 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC
Confidence 56677889999999999999999999877765544 44444555443
No 61
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.07 E-value=0.28 Score=34.18 Aligned_cols=49 Identities=6% Similarity=0.044 Sum_probs=38.1
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEec
Q 025727 171 LVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVA--GRLLKTAFIEVR 219 (249)
Q Consensus 171 ~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~--~~vl~ti~vev~ 219 (249)
++|.|.+.+++|.+.+|+.+|.+.|+.+.+.+..... +.....+.+.+.
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~ 51 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHET 51 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccC
Confidence 3688999999999999999999999999998876543 444445555443
No 62
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=94.05 E-value=0.031 Score=46.35 Aligned_cols=51 Identities=35% Similarity=0.464 Sum_probs=46.6
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHhccCCC--CCCCCcchHHHHHHHHHHHHHH
Q 025727 52 AASKNIVSERNRRKKLNERLFALRSVVPN--ISKMDKASIIKDAIDYIQELHE 102 (249)
Q Consensus 52 ~~~~h~~~ER~RR~~in~~~~~LrslvP~--~~k~dKasIl~~ai~yI~~Lq~ 102 (249)
.+.-|++.||+|=..+|+.|..||.++|. +.|.+|.--|+-|..||-.|-+
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhh
Confidence 57889999999999999999999999997 5788999999999999998863
No 63
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=94.01 E-value=0.55 Score=32.01 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=37.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEe
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAV--AGRLLKTAFIEV 218 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~--~~~vl~ti~vev 218 (249)
.+.+.+.+++|.|.+|+.+|.+.++.+.+.+.... ++.....|.+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 50 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG 50 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC
Confidence 36677889999999999999999999999987764 455555666665
No 64
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=93.89 E-value=0.58 Score=33.90 Aligned_cols=49 Identities=10% Similarity=0.139 Sum_probs=38.8
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEEEeccc
Q 025727 173 VSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAG-RLLKTAFIEVRFL 221 (249)
Q Consensus 173 I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~-~vl~ti~vev~~~ 221 (249)
+.+..++++|.|.+|++.|.++|+.+++....+... ...+.|+++++..
T Consensus 4 l~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~ 53 (80)
T cd04905 4 IVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH 53 (80)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC
Confidence 444556789999999999999999999998776643 4557888887754
No 65
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=93.84 E-value=0.34 Score=34.54 Aligned_cols=47 Identities=6% Similarity=0.085 Sum_probs=38.4
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEEEecc
Q 025727 174 SVTCSKRTDTMVKLCEAFESLKLKIITANITAVAG-RLLKTAFIEVRF 220 (249)
Q Consensus 174 ~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~-~vl~ti~vev~~ 220 (249)
-+..++++|.|.+|+++|...|+.+++....+..+ .--+.|.+++++
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~ 50 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEG 50 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEEC
Confidence 34456789999999999999999999998887766 445688888775
No 66
>PRK08577 hypothetical protein; Provisional
Probab=93.81 E-value=0.71 Score=37.20 Aligned_cols=54 Identities=9% Similarity=0.223 Sum_probs=44.1
Q ss_pred cceeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEecc
Q 025727 167 GEKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVA--GRLLKTAFIEVRF 220 (249)
Q Consensus 167 g~~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~--~~vl~ti~vev~~ 220 (249)
..+.+.|.|.+.+++|.|.+|+.+|.++++++.+.+..+.. +.....+.+++.+
T Consensus 53 ~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~ 108 (136)
T PRK08577 53 GKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSK 108 (136)
T ss_pred CccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCC
Confidence 34578899999999999999999999999999988776653 4444567778776
No 67
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=93.78 E-value=0.28 Score=34.19 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=37.1
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecc
Q 025727 173 VSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRF 220 (249)
Q Consensus 173 I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~ 220 (249)
|.|..++++|.|.+|+++|.+.|+.|.+..+...++. ..+++.++.
T Consensus 4 i~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~~~ 49 (66)
T cd04908 4 LSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIVSD 49 (66)
T ss_pred EEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEECC
Confidence 5667888999999999999999999999887766663 555655643
No 68
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=93.77 E-value=0.45 Score=43.45 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=49.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEEEecc--cchhhhhhhhhh
Q 025727 170 ILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITA--VAGRLLKTAFIEVRF--LFFSLFFSTYHH 232 (249)
Q Consensus 170 ~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~--~~~~vl~ti~vev~~--~~~~~l~~~~~~ 232 (249)
.++|.+.|++++|+...|.++|-++|++|...+.++ .+|.+.-.+.+..+. ..+..|++.+..
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~ 72 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAA 72 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 578999999999999999999999999999999999 888665566666622 134555555443
No 69
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=93.51 E-value=0.046 Score=53.04 Aligned_cols=57 Identities=23% Similarity=0.258 Sum_probs=47.0
Q ss_pred CchhhhcchhHHHHHHHHHHHHHHHhccCCC---CC-CCCcchHHHHHHHHHHHHHHHHHH
Q 025727 50 SSAASKNIVSERNRRKKLNERLFALRSVVPN---IS-KMDKASIIKDAIDYIQELHEQEKR 106 (249)
Q Consensus 50 ~~~~~~h~~~ER~RR~~in~~~~~LrslvP~---~~-k~dKasIl~~ai~yI~~Lq~~~~~ 106 (249)
+.+|..++..||-|=..||+.|++|.-+.-- .. .-.|.-||..|+.-|-.|+++|++
T Consensus 524 kERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 524 KERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred HHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 4478889999999989999999999877543 22 236889999999999999998875
No 70
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=93.22 E-value=0.23 Score=42.79 Aligned_cols=63 Identities=13% Similarity=0.137 Sum_probs=54.0
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecccchhhhhhhhh
Q 025727 169 KILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRFLFFSLFFSTYH 231 (249)
Q Consensus 169 ~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~~~~~~l~~~~~ 231 (249)
..++|.+.+++++|+...|-++|-++|..++.++.+..+|.+--.+.|......+..|...+.
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~~~~~~le~~L~ 69 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSWNAITLIESTLP 69 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCChhHHHHHHHHHH
Confidence 457899999999999999999999999999999999999988888888776665666655543
No 71
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=93.04 E-value=0.7 Score=42.10 Aligned_cols=61 Identities=11% Similarity=0.234 Sum_probs=48.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEeccc--chhhhhhhhhh
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAV--AGRLLKTAFIEVRFL--FFSLFFSTYHH 232 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~--~~~vl~ti~vev~~~--~~~~l~~~~~~ 232 (249)
+|.+.|++++|+...|-..|-++|++|+.++-+.. +|.++-.+.+.+++. .+..|++.+..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 58899999999999999999999999999998874 477776777776653 35566666555
No 72
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=92.96 E-value=0.58 Score=39.10 Aligned_cols=63 Identities=8% Similarity=0.070 Sum_probs=49.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEecccchhhhhhhhhhhh
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVA--GRLLKTAFIEVRFLFFSLFFSTYHHQL 234 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~--~~vl~ti~vev~~~~~~~l~~~~~~~~ 234 (249)
.|.|.-++++|.|.+|..+|...|+.|.+..+...+ +....+|++..++..+.++..-+..+.
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCc
Confidence 577888899999999999999999999999888775 555568888876666666555554443
No 73
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.59 E-value=1 Score=31.32 Aligned_cols=48 Identities=8% Similarity=0.139 Sum_probs=35.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-C-EEEEEEEEEec
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVA-G-RLLKTAFIEVR 219 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~-~-~vl~ti~vev~ 219 (249)
.+.+.+++++|.|.+|+..|.++|++|......... + .-...|.++++
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~ 52 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQ 52 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCH
Confidence 467789999999999999999999999988765542 2 22334555543
No 74
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=92.59 E-value=0.62 Score=31.57 Aligned_cols=44 Identities=7% Similarity=0.049 Sum_probs=36.5
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEE
Q 025727 173 VSVTCSKRTDTMVKLCEAFESLKLKIITANITAVA--GRLLKTAFI 216 (249)
Q Consensus 173 I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~--~~vl~ti~v 216 (249)
+.|.+.+++|.+.+|+.+|.+.|+.|.+..+...+ +.....|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 56788899999999999999999999999987764 555556655
No 75
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.23 E-value=1.2 Score=30.94 Aligned_cols=49 Identities=8% Similarity=0.168 Sum_probs=37.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEecc
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAV--AGRLLKTAFIEVRF 220 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~--~~~vl~ti~vev~~ 220 (249)
.|.+.+++++|.|.+|+++|.+.|+.|.+...... ++.....|+++.++
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~ 53 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMN 53 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCC
Confidence 46778899999999999999999999988765433 34555566666544
No 76
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=92.16 E-value=1 Score=41.08 Aligned_cols=66 Identities=6% Similarity=-0.102 Sum_probs=47.0
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEe--ccc-chhhhhhhhhhhhh
Q 025727 170 ILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEV--RFL-FFSLFFSTYHHQLF 235 (249)
Q Consensus 170 ~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev--~~~-~~~~l~~~~~~~~~ 235 (249)
.++|.|.|++++|+..+|.++|-++|++|...+..+..+.-+.++.+++ +.. .+..|++.+.....
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l~~ 75 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPIAA 75 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999988643222233344444 332 35667766655443
No 77
>PRK07334 threonine dehydratase; Provisional
Probab=92.10 E-value=0.98 Score=42.94 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=44.9
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCEEEEEEEEEeccc
Q 025727 170 ILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAV-----AGRLLKTAFIEVRFL 221 (249)
Q Consensus 170 ~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~-----~~~vl~ti~vev~~~ 221 (249)
.+.|.|.+.+++|+|.+|+.+|.+.+++|.+.++.+. ++.....|.+++.+-
T Consensus 326 ~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~ 382 (403)
T PRK07334 326 LARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDA 382 (403)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCH
Confidence 4889999999999999999999999999999998764 566666888888654
No 78
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.09 E-value=1 Score=30.55 Aligned_cols=33 Identities=9% Similarity=0.240 Sum_probs=29.7
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe
Q 025727 173 VSVTCSKRTDTMVKLCEAFESLKLKIITANITA 205 (249)
Q Consensus 173 I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~ 205 (249)
+.+.+.+++|.+.+|+.+|.++|++|.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 567888999999999999999999999888765
No 79
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=91.93 E-value=0.93 Score=38.07 Aligned_cols=60 Identities=10% Similarity=0.070 Sum_probs=47.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEecccchhhhhhhhh
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVA--GRLLKTAFIEVRFLFFSLFFSTYH 231 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~--~~vl~ti~vev~~~~~~~l~~~~~ 231 (249)
.|.|.-++++|.|.+|..+|...|+.|.+..+...+ +....+|++..++..+.++..-+.
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~ 65 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLN 65 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHh
Confidence 577888899999999999999999999999887664 555668888877665555544333
No 80
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.45 E-value=1.4 Score=31.06 Aligned_cols=34 Identities=9% Similarity=0.188 Sum_probs=29.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee
Q 025727 173 VSVTCSKRTDTMVKLCEAFESLKLKIITANITAV 206 (249)
Q Consensus 173 I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~ 206 (249)
+.+.-+++||.|.++++.|.+.|+.|++......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 4566788999999999999999999999876654
No 81
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.91 E-value=1.6 Score=33.05 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=40.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEE-EEEEEEeccc
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLL-KTAFIEVRFL 221 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl-~ti~vev~~~ 221 (249)
-|-+..++++|.|.++|.+|...|+.+++-..-+..+..+ |.|.+++++.
T Consensus 16 slif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~ 66 (90)
T cd04931 16 SLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK 66 (90)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC
Confidence 3444557789999999999999999999999888766654 6888888764
No 82
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=90.33 E-value=1.3 Score=40.56 Aligned_cols=65 Identities=9% Similarity=0.123 Sum_probs=45.4
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE--eeCCEEEEEEEEE--eccc-chhhhhhhhhhhh
Q 025727 170 ILVVSVTCSKRTDTMVKLCEAFESLKLKIITANIT--AVAGRLLKTAFIE--VRFL-FFSLFFSTYHHQL 234 (249)
Q Consensus 170 ~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is--~~~~~vl~ti~ve--v~~~-~~~~l~~~~~~~~ 234 (249)
.++|.|.|++++|+...|...|-+.|++|+..+-. +..+.++-.+.+. .... .+..|++.+....
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~~~~~~~~l~~~l~~l~ 78 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSAEAASVDTFRQEFQPVA 78 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999999999875 3344444333333 1122 3556666655443
No 83
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=89.30 E-value=1.5 Score=31.52 Aligned_cols=47 Identities=6% Similarity=0.111 Sum_probs=39.0
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEE-EEEEEEEeccc
Q 025727 175 VTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRL-LKTAFIEVRFL 221 (249)
Q Consensus 175 I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~v-l~ti~vev~~~ 221 (249)
+..++++|.|.+||..|...|+.+++-..-+..+.. -|.|.+++++.
T Consensus 5 f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~ 52 (74)
T cd04904 5 FSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVD 52 (74)
T ss_pred EEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcC
Confidence 344678999999999999999999999988777665 46888888763
No 84
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=88.49 E-value=0.72 Score=41.38 Aligned_cols=51 Identities=31% Similarity=0.304 Sum_probs=44.1
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHhccCCCC---CCCCcchHHHHHHHHHHHHHH
Q 025727 52 AASKNIVSERNRRKKLNERLFALRSVVPNI---SKMDKASIIKDAIDYIQELHE 102 (249)
Q Consensus 52 ~~~~h~~~ER~RR~~in~~~~~LrslvP~~---~k~dKasIl~~ai~yI~~Lq~ 102 (249)
+|..-+..||+|=..+|..|..||..||.. .|.+|-.-|+.|-.||.-|-.
T Consensus 174 rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~ 227 (285)
T KOG4395|consen 174 RRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGC 227 (285)
T ss_pred hhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHH
Confidence 345567899999999999999999999974 678899999999999998764
No 85
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=87.85 E-value=0.89 Score=34.58 Aligned_cols=62 Identities=11% Similarity=0.170 Sum_probs=53.2
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccc--chhhhhhhhh
Q 025727 170 ILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRFL--FFSLFFSTYH 231 (249)
Q Consensus 170 ~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~~--~~~~l~~~~~ 231 (249)
.++|.|.-.+++|....|-.+|-++|++|+..+=+...|.+--.+.|..+++ .+..+++.+.
T Consensus 3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~~~d~~~lr~~l~ 66 (90)
T COG3830 3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKEVVDFAALRDELA 66 (90)
T ss_pred eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCChHhccHHHHHHHHH
Confidence 3689999999999999999999999999999999999999988888888765 4555665543
No 86
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=87.56 E-value=3.6 Score=30.21 Aligned_cols=56 Identities=11% Similarity=0.113 Sum_probs=41.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEEEecccchhhhhh
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITA--VAGRLLKTAFIEVRFLFFSLFFS 228 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~--~~~~vl~ti~vev~~~~~~~l~~ 228 (249)
.+.+.-.++||.|.+|+.++.--|..|.+-++.. .++...-+|.+. ++..+.++..
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-~~~~i~ql~k 62 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-SERPIDLLSS 62 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-CCchHHHHHH
Confidence 5777888899999999999999999888888776 555555577764 4444554443
No 87
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=87.44 E-value=3.2 Score=35.29 Aligned_cols=65 Identities=9% Similarity=0.060 Sum_probs=48.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEEEecccchhhhhhhhhhhhhh
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITA--VAGRLLKTAFIEVRFLFFSLFFSTYHHQLFL 236 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~--~~~~vl~ti~vev~~~~~~~l~~~~~~~~~~ 236 (249)
.|.+.-.++||.|.+|..+|...|++|.+-++.. ..+..-.+|.+..++..+.++...+..+..-
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidV 70 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNI 70 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHh
Confidence 5788889999999999999999999999988876 5555555666665444566666666555443
No 88
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.42 E-value=2.9 Score=30.33 Aligned_cols=45 Identities=11% Similarity=0.171 Sum_probs=37.8
Q ss_pred cCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEE-EEEEEEEeccc
Q 025727 177 CSKRTDTMVKLCEAFESLKLKIITANITAVAGRL-LKTAFIEVRFL 221 (249)
Q Consensus 177 C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~v-l~ti~vev~~~ 221 (249)
.++++|.|.+++..|+..|+.+.+-..-+..+.. -|.|.+++++.
T Consensus 7 l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~ 52 (74)
T cd04929 7 LKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECD 52 (74)
T ss_pred cCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC
Confidence 3678999999999999999999999888765554 46888888875
No 89
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=87.37 E-value=0.37 Score=43.37 Aligned_cols=51 Identities=37% Similarity=0.499 Sum_probs=44.8
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHhccCCC---CCCCCcchHHHHHHHHHHHHHH
Q 025727 52 AASKNIVSERNRRKKLNERLFALRSVVPN---ISKMDKASIIKDAIDYIQELHE 102 (249)
Q Consensus 52 ~~~~h~~~ER~RR~~in~~~~~LrslvP~---~~k~dKasIl~~ai~yI~~Lq~ 102 (249)
.|.+-+..||+|=-.+|+.|..||.++|. ..|+.|...|.-|-+||-.|++
T Consensus 72 rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 72 RRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred hcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 45666788998889999999999999995 5889999999999999998874
No 90
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=86.84 E-value=3.6 Score=42.47 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=45.1
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEeccc
Q 025727 170 ILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAV--AGRLLKTAFIEVRFL 221 (249)
Q Consensus 170 ~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~--~~~vl~ti~vev~~~ 221 (249)
.+.|.|.+.+++|+|.+|..+|.+.++.|.++++.+. ++.+...|.++|.+-
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~ 719 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNL 719 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCH
Confidence 3578899999999999999999999999999998765 466666888998875
No 91
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=86.83 E-value=0.5 Score=47.77 Aligned_cols=46 Identities=37% Similarity=0.584 Sum_probs=40.4
Q ss_pred hhhcchhHHHHHHHHHHHHHHHhccCCC----CCCCCcchHHHHHHHHHH
Q 025727 53 ASKNIVSERNRRKKLNERLFALRSVVPN----ISKMDKASIIKDAIDYIQ 98 (249)
Q Consensus 53 ~~~h~~~ER~RR~~in~~~~~LrslvP~----~~k~dKasIl~~ai~yI~ 98 (249)
+.+-.-+-|-||.|=|+-|++|..+||- .+..|||+|+.=||.|++
T Consensus 47 kEkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 47 KEKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 4455678899999999999999999994 377899999999999987
No 92
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.60 E-value=1.5 Score=45.39 Aligned_cols=50 Identities=24% Similarity=0.242 Sum_probs=44.6
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEE-EEeeCCEEEEEEEEEe
Q 025727 169 KILVVSVTCSKRTDTMVKLCEAFESLKLKIITAN-ITAVAGRLLKTAFIEV 218 (249)
Q Consensus 169 ~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~-is~~~~~vl~ti~vev 218 (249)
+..-|-|.|+++|.+|+.|+.++...|++|+.|+ +++.+|+.+.||.|.-
T Consensus 683 ~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~ 733 (867)
T COG2844 683 GGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLE 733 (867)
T ss_pred CceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEec
Confidence 3467889999999999999999999999999998 5678888999998763
No 93
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=86.42 E-value=2.1 Score=29.61 Aligned_cols=45 Identities=13% Similarity=0.164 Sum_probs=35.1
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEEEe
Q 025727 174 SVTCSKRTDTMVKLCEAFESLKLKIITANITA--VAGRLLKTAFIEV 218 (249)
Q Consensus 174 ~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~--~~~~vl~ti~vev 218 (249)
-+..++++|.+.+|..+|.+.|+.|.+..+.. .++.....|.++.
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~ 49 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE 49 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence 45778899999999999999999998887655 3466665665544
No 94
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=86.37 E-value=0.57 Score=46.25 Aligned_cols=38 Identities=37% Similarity=0.655 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhccCCC----CCCCCcchHHHHHHHHHH
Q 025727 61 RNRRKKLNERLFALRSVVPN----ISKMDKASIIKDAIDYIQ 98 (249)
Q Consensus 61 R~RR~~in~~~~~LrslvP~----~~k~dKasIl~~ai~yI~ 98 (249)
++-|+++|.-+..|.+|+|. ++|.||.|||.=++.|++
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 34589999999999999997 599999999999999986
No 95
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=86.36 E-value=2.3 Score=31.97 Aligned_cols=61 Identities=11% Similarity=0.168 Sum_probs=42.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC--EEEEEEEEE-ecccchhhhhhhhhh
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAG--RLLKTAFIE-VRFLFFSLFFSTYHH 232 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~--~vl~ti~ve-v~~~~~~~l~~~~~~ 232 (249)
.|++.-.+++|.|.+|..+|...|..|.+-++....+ ....||.+. .++..+.++..-+..
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~K 67 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQ 67 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhC
Confidence 5788888999999999999988887777766665544 444477776 444455554444433
No 96
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=86.31 E-value=0.7 Score=44.22 Aligned_cols=42 Identities=36% Similarity=0.564 Sum_probs=37.8
Q ss_pred chhHHHHHHHHHHHHHHHhccCCC----CCCCCcchHHHHHHHHHH
Q 025727 57 IVSERNRRKKLNERLFALRSVVPN----ISKMDKASIIKDAIDYIQ 98 (249)
Q Consensus 57 ~~~ER~RR~~in~~~~~LrslvP~----~~k~dKasIl~~ai~yI~ 98 (249)
+-+-|.||++-|--|.+|..++|- .+..||++|+.=|..|||
T Consensus 6 KnaA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlK 51 (598)
T KOG3559|consen 6 KNAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLK 51 (598)
T ss_pred hhHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHH
Confidence 456799999999999999999996 367999999999999998
No 97
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=86.18 E-value=4.6 Score=41.35 Aligned_cols=52 Identities=12% Similarity=0.223 Sum_probs=45.0
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEEeccc
Q 025727 170 ILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVA-GRLLKTAFIEVRFL 221 (249)
Q Consensus 170 ~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~-~~vl~ti~vev~~~ 221 (249)
.+.|.|.+.+++|+|.+|+.+|-+.+..|.+.++.... +.+...|.++|.+-
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~ 662 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKNY 662 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECCH
Confidence 45788999999999999999999999999999988774 66666888888774
No 98
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=86.11 E-value=4.4 Score=29.80 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=43.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEecccchhhhhhhh
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVA--GRLLKTAFIEVRFLFFSLFFSTY 230 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~--~~vl~ti~vev~~~~~~~l~~~~ 230 (249)
.|.+.-.++||.|.+|+.+|.-.|..|.+-++...+ +....||.+..++..+.++-.-+
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL 64 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQL 64 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHH
Confidence 578888899999999999999999888887777544 44455777666665555544433
No 99
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=84.80 E-value=1.1 Score=30.91 Aligned_cols=46 Identities=4% Similarity=-0.037 Sum_probs=35.1
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEec
Q 025727 174 SVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVR 219 (249)
Q Consensus 174 ~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~ 219 (249)
-+.+.+++|++.+|+.+|.+.|..+...+....++.....|.+++.
T Consensus 3 ~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~~ 48 (69)
T cd04901 3 LHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDSE 48 (69)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCCC
Confidence 4577889999999999999999999777665555665556555544
No 100
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=84.06 E-value=5.9 Score=27.70 Aligned_cols=49 Identities=8% Similarity=0.048 Sum_probs=36.4
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEEEecccchhhhh
Q 025727 179 KRTDTMVKLCEAFESLKLKIITANITA--VAGRLLKTAFIEVRFLFFSLFF 227 (249)
Q Consensus 179 ~~~g~L~~Il~aLesl~L~Vvsa~is~--~~~~vl~ti~vev~~~~~~~l~ 227 (249)
+++|.|.+|+.+|.--|.+|.+-++.. .++....+|.+..++..+..|.
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~ 51 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLV 51 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHH
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHH
Confidence 468999999999999999998888887 6666666777776555444443
No 101
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.00 E-value=6.2 Score=27.56 Aligned_cols=56 Identities=14% Similarity=0.033 Sum_probs=38.6
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEEeccc-chhhhhhhh
Q 025727 174 SVTCSKRTDTMVKLCEAFESLKLKIITANITAVA-GRLLKTAFIEVRFL-FFSLFFSTY 230 (249)
Q Consensus 174 ~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~-~~vl~ti~vev~~~-~~~~l~~~~ 230 (249)
.+.-+.+||.|.+++++|.+ |.+|+..+....+ +.....+.+++.+. .+..+.+.+
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L 59 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERL 59 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHH
Confidence 45668899999999999999 9999988776543 22333556676653 444444443
No 102
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=83.99 E-value=5.4 Score=40.99 Aligned_cols=52 Identities=13% Similarity=0.052 Sum_probs=44.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEEeccc
Q 025727 170 ILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVA-GRLLKTAFIEVRFL 221 (249)
Q Consensus 170 ~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~-~~vl~ti~vev~~~ 221 (249)
.+.|.|.+.+++|+|.+|+.+|-+.++.|.++++.+.+ +.+...|.++|.+-
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~ 678 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARDR 678 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECCH
Confidence 45788999999999999999999999999999987775 45555888888874
No 103
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=82.82 E-value=6.9 Score=35.62 Aligned_cols=67 Identities=9% Similarity=0.087 Sum_probs=48.3
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEeccc--chhhhhhhhhhhhhh
Q 025727 170 ILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAV--AGRLLKTAFIEVRFL--FFSLFFSTYHHQLFL 236 (249)
Q Consensus 170 ~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~--~~~vl~ti~vev~~~--~~~~l~~~~~~~~~~ 236 (249)
.+++.++|++++|+...|-..|-+.|..|+.++-.+. +|+++--+....++. ....|+..+.+....
T Consensus 7 ~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~~~~~~~l~~~f~~~a~~ 77 (287)
T COG0788 7 TFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGGPLDREALRAAFAPLAEE 77 (287)
T ss_pred ceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCCcccHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999975432 566665444444443 345566665554443
No 104
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=81.71 E-value=8.7 Score=33.02 Aligned_cols=63 Identities=10% Similarity=0.028 Sum_probs=46.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC----C--EEEEEEEEEeccc-chhhhhhhhhhh
Q 025727 171 LVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVA----G--RLLKTAFIEVRFL-FFSLFFSTYHHQ 233 (249)
Q Consensus 171 ~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~----~--~vl~ti~vev~~~-~~~~l~~~~~~~ 233 (249)
+.|.+.-.++||+..+|-++|-++|++|.+-+..+.+ + .+...+.+.+..+ .+..|++.+...
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~~l~~l 165 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQAFKAL 165 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHHHHHHH
Confidence 6788889999999999999999999999888776654 3 3333555555554 466677666543
No 105
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=79.02 E-value=13 Score=38.30 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=42.5
Q ss_pred EEEEEE-cCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccc
Q 025727 171 LVVSVT-CSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRFL 221 (249)
Q Consensus 171 ~~I~I~-C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~~ 221 (249)
-.+.|. |++++|.++++..+|--+++.|.+|++.+ +|.....|.|....+
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~ 597 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGP 597 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCC
Confidence 345555 49999999999999999999999999999 888888888886544
No 106
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=78.32 E-value=12 Score=30.79 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=45.7
Q ss_pred ceeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEE-EEeeCCEEEEEEEEEecc
Q 025727 168 EKILVVSVTCSKRTDTMVKLCEAFESLKLKIITAN-ITAVAGRLLKTAFIEVRF 220 (249)
Q Consensus 168 ~~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~-is~~~~~vl~ti~vev~~ 220 (249)
+..+.+.+.-++|.|.|+++++++-..++.|++.+ ..+.+|+.-.||.+....
T Consensus 70 ~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ss 123 (150)
T COG4492 70 ERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSS 123 (150)
T ss_pred ceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchh
Confidence 45678888899999999999999999999999986 558999988888877653
No 107
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=77.32 E-value=20 Score=26.15 Aligned_cols=48 Identities=19% Similarity=0.169 Sum_probs=34.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEEecc
Q 025727 171 LVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVA-GRLLKTAFIEVRF 220 (249)
Q Consensus 171 ~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~-~~vl~ti~vev~~ 220 (249)
.++.+.-+++||.|.+++++|- +.+|........+ +.....|.+++.+
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~ 50 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVAN 50 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCC
Confidence 4678888999999999999999 6666655554322 3444456677766
No 108
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.76 E-value=6.5 Score=31.06 Aligned_cols=47 Identities=9% Similarity=0.111 Sum_probs=38.4
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEE-EEEEEEEeccc
Q 025727 175 VTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRL-LKTAFIEVRFL 221 (249)
Q Consensus 175 I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~v-l~ti~vev~~~ 221 (249)
+..++++|.|.+||..|...|+.+++-.+-+..+.. -|.|.|++++.
T Consensus 46 fsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~ 93 (115)
T cd04930 46 FSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVH 93 (115)
T ss_pred EEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeC
Confidence 333778999999999999999999999888775554 36888888765
No 109
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=76.42 E-value=8.3 Score=31.07 Aligned_cols=44 Identities=9% Similarity=0.118 Sum_probs=37.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEE
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAF 215 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~ 215 (249)
.|++..++++|.|..++.+|.+.|+.+---++...+++=+.-.+
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmv 48 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMV 48 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEE
Confidence 48889999999999999999999999998888877776554433
No 110
>PRK08198 threonine dehydratase; Provisional
Probab=75.53 E-value=18 Score=34.22 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=43.5
Q ss_pred ceeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee-----CCEEEEEEEEEecc
Q 025727 168 EKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAV-----AGRLLKTAFIEVRF 220 (249)
Q Consensus 168 ~~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~-----~~~vl~ti~vev~~ 220 (249)
+..+.+.|.-+++||.|.+++..|-+.|.+|++.+.... .+....+|.+++.+
T Consensus 325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~ 382 (404)
T PRK08198 325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRG 382 (404)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCC
Confidence 456789999999999999999999999999998887642 35666677777754
No 111
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=75.31 E-value=20 Score=33.61 Aligned_cols=64 Identities=11% Similarity=0.161 Sum_probs=47.4
Q ss_pred ceeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe-----eCCEEEEEEEEEeccc-chhhhhhhhh
Q 025727 168 EKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITA-----VAGRLLKTAFIEVRFL-FFSLFFSTYH 231 (249)
Q Consensus 168 ~~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~-----~~~~vl~ti~vev~~~-~~~~l~~~~~ 231 (249)
+..+.+.|.-+++||.|.++++.+.+.|.+|++..... ..+....+|.+++.+. ....+.+.+.
T Consensus 303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~~~~~~~~i~~~L~ 372 (380)
T TIGR01127 303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETRGKEHLDEILKILR 372 (380)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeCCHHHHHHHHHHHH
Confidence 45678899999999999999999999999999886652 2356666777777532 3444555443
No 112
>PRK11899 prephenate dehydratase; Provisional
Probab=71.63 E-value=21 Score=32.58 Aligned_cols=49 Identities=8% Similarity=0.112 Sum_probs=40.8
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEE-EEEEEEEeccc
Q 025727 173 VSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRL-LKTAFIEVRFL 221 (249)
Q Consensus 173 I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~v-l~ti~vev~~~ 221 (249)
|-+..++++|.|.++|.+|...|++.+.-.+-+..+.. -|.|.+++++.
T Consensus 197 l~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~ 246 (279)
T PRK11899 197 FVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGH 246 (279)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECC
Confidence 33344689999999999999999999999999886665 55999998875
No 113
>PRK06382 threonine dehydratase; Provisional
Probab=70.96 E-value=22 Score=33.83 Aligned_cols=53 Identities=17% Similarity=0.192 Sum_probs=42.3
Q ss_pred ceeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE-----eeCCEEEEEEEEEecc
Q 025727 168 EKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANIT-----AVAGRLLKTAFIEVRF 220 (249)
Q Consensus 168 ~~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is-----~~~~~vl~ti~vev~~ 220 (249)
+..+.+.|.-++++|.|.+|++.|.+.|++|++.... ...+....+|.+++.+
T Consensus 328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~ 385 (406)
T PRK06382 328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRG 385 (406)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCC
Confidence 4567888889999999999999999999999987764 2244566678887763
No 114
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=70.52 E-value=29 Score=23.18 Aligned_cols=34 Identities=6% Similarity=0.120 Sum_probs=25.9
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEe
Q 025727 172 VVSVTCS---KRTDTMVKLCEAFESLKLKIITANITA 205 (249)
Q Consensus 172 ~I~I~C~---~~~g~L~~Il~aLesl~L~Vvsa~is~ 205 (249)
+|+|.+. ..++.+.+|+++|.+.|+.|.-.+.+.
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 3555554 468999999999999999997665544
No 115
>PRK08526 threonine dehydratase; Provisional
Probab=69.68 E-value=28 Score=33.27 Aligned_cols=63 Identities=8% Similarity=0.114 Sum_probs=48.4
Q ss_pred ceeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCE-----EEEEEEEEeccc-chhhhhhhh
Q 025727 168 EKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGR-----LLKTAFIEVRFL-FFSLFFSTY 230 (249)
Q Consensus 168 ~~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~-----vl~ti~vev~~~-~~~~l~~~~ 230 (249)
+..+.+.+.-+++||.|.+++..+-+.+.+|+.......... +...+.+++.+. .+..+.+.+
T Consensus 324 ~r~~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~l 392 (403)
T PRK08526 324 YRKMKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKIL 392 (403)
T ss_pred CCEEEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCHHHHHHHHHHH
Confidence 567889999999999999999999999999999888664444 555677777764 444444444
No 116
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=68.94 E-value=26 Score=26.93 Aligned_cols=56 Identities=7% Similarity=0.091 Sum_probs=38.9
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCE--EEEEEEEEecccchhhh
Q 025727 170 ILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGR--LLKTAFIEVRFLFFSLF 226 (249)
Q Consensus 170 ~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~--vl~ti~vev~~~~~~~l 226 (249)
...|.+.-.+++|.|.+|..+|---|..|.+-++...+.. ...||.+. +++.+.++
T Consensus 8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~-~~~~i~Qi 65 (96)
T PRK08178 8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN-DDQRLEQM 65 (96)
T ss_pred CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc-CchHHHHH
Confidence 4578888999999999999999888877766665554443 44466655 33444443
No 117
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=65.35 E-value=6.7 Score=33.36 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=55.3
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecccchhhhhhhhh
Q 025727 169 KILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRFLFFSLFFSTYH 231 (249)
Q Consensus 169 ~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~~~~~~l~~~~~ 231 (249)
.-++|+..-.++||+.-.|.++.-+.|..++.+.++.+|+.+-..+.+...-+++..|...+.
T Consensus 4 ~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisgs~dav~~le~~l~ 66 (176)
T COG2716 4 HYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISGSWDAVTLLEATLP 66 (176)
T ss_pred cEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEeeCHHHHHHHHHHhh
Confidence 347889999999999999999999999999999999999999888888887777877766653
No 118
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=64.45 E-value=32 Score=21.70 Aligned_cols=26 Identities=8% Similarity=0.119 Sum_probs=22.0
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEEEe
Q 025727 180 RTDTMVKLCEAFESLKLKIITANITA 205 (249)
Q Consensus 180 ~~g~L~~Il~aLesl~L~Vvsa~is~ 205 (249)
.++.+.+++++|.+.++.|.....+.
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 57899999999999999997776543
No 119
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=64.24 E-value=44 Score=34.49 Aligned_cols=53 Identities=13% Similarity=0.210 Sum_probs=43.6
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEE-EEEEEEEeccc
Q 025727 169 KILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRL-LKTAFIEVRFL 221 (249)
Q Consensus 169 ~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~v-l~ti~vev~~~ 221 (249)
-.+-|.|...+++|+|.+|+++|-+.+..|.+++..+.++.+ .-.|.+++.+-
T Consensus 626 f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~n~ 679 (701)
T COG0317 626 YPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVKNL 679 (701)
T ss_pred eEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEECcH
Confidence 346677888899999999999999999999999998864444 44777788764
No 120
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=63.04 E-value=11 Score=31.63 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCC--CCCCcchHHHHHHHHHHHH
Q 025727 58 VSERNRRKKLNERLFALRSVVPNI--SKMDKASIIKDAIDYIQEL 100 (249)
Q Consensus 58 ~~ER~RR~~in~~~~~LrslvP~~--~k~dKasIl~~ai~yI~~L 100 (249)
..||.|-+++++.+.-|+.|+|.. .++.+.--|.-+-+||..|
T Consensus 28 ~~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~ 72 (173)
T KOG4447|consen 28 RKERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSL 72 (173)
T ss_pred HHHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhH
Confidence 379999999999999999999974 3333333355555666555
No 121
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=61.12 E-value=36 Score=22.76 Aligned_cols=25 Identities=12% Similarity=0.100 Sum_probs=21.6
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEE
Q 025727 179 KRTDTMVKLCEAFESLKLKIITANI 203 (249)
Q Consensus 179 ~~~g~L~~Il~aLesl~L~Vvsa~i 203 (249)
..+|.+.+|+++|+..|+.|.....
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t 36 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPT 36 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEec
Confidence 3588999999999999999988743
No 122
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=60.41 E-value=43 Score=21.59 Aligned_cols=34 Identities=18% Similarity=0.243 Sum_probs=26.4
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEe
Q 025727 172 VVSVTCS---KRTDTMVKLCEAFESLKLKIITANITA 205 (249)
Q Consensus 172 ~I~I~C~---~~~g~L~~Il~aLesl~L~Vvsa~is~ 205 (249)
+|+|.+. ..++.+.+++++|.+.++.|.....+.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 3555444 467899999999999999998876644
No 123
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=58.91 E-value=42 Score=28.18 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=43.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee---CCEEEEEEEEEeccc
Q 025727 171 LVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAV---AGRLLKTAFIEVRFL 221 (249)
Q Consensus 171 ~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~---~~~vl~ti~vev~~~ 221 (249)
+.+.|..+++||.|+++++=|-+.|.+|++..-+.. ++++---|.++++.+
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~ 59 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDRE 59 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEeccc
Confidence 456667788999999999999999999999988877 788877788888743
No 124
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=58.36 E-value=53 Score=21.98 Aligned_cols=27 Identities=7% Similarity=0.080 Sum_probs=22.4
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEe
Q 025727 179 KRTDTMVKLCEAFESLKLKIITANITA 205 (249)
Q Consensus 179 ~~~g~L~~Il~aLesl~L~Vvsa~is~ 205 (249)
..++.+.+++++|.+.|++|.-...+.
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 468999999999999999997665544
No 125
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=57.25 E-value=4.2 Score=41.42 Aligned_cols=62 Identities=18% Similarity=0.320 Sum_probs=50.4
Q ss_pred CchhhhcchhHHHHHHHHHHHHHHHhccCCCC-----CCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 025727 50 SSAASKNIVSERNRRKKLNERLFALRSVVPNI-----SKMDKASIIKDAIDYIQELHEQEKRIRDEI 111 (249)
Q Consensus 50 ~~~~~~h~~~ER~RR~~in~~~~~LrslvP~~-----~k~dKasIl~~ai~yI~~Lq~~~~~L~~~~ 111 (249)
.+++..|+-+|.+||..++-.|..|-++.-+. .|+.+..-++.++.||..++.+...+.++-
T Consensus 649 k~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~ 715 (856)
T KOG3582|consen 649 KNRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEA 715 (856)
T ss_pred cCCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhh
Confidence 35678899999999999999999999998763 567788889999999988876655555443
No 126
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=56.63 E-value=13 Score=22.78 Aligned_cols=17 Identities=41% Similarity=0.622 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhc
Q 025727 60 ERNRRKKLNERLFALRS 76 (249)
Q Consensus 60 ER~RR~~in~~~~~Lrs 76 (249)
=|+||++++.++..||.
T Consensus 13 Lrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 13 LRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 37789999999999985
No 127
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=56.40 E-value=78 Score=27.05 Aligned_cols=90 Identities=17% Similarity=0.204 Sum_probs=50.5
Q ss_pred cccccccccccccccCCccccccccC---CCCCCCCCCCCCchh-hhcchhHHH----HHHHHHHHHHHHhccCCCCCCC
Q 025727 13 QNYWETKMFLQNEEFDTWPLDEAFSG---YYDSSSPDGAASSAA-SKNIVSERN----RRKKLNERLFALRSVVPNISKM 84 (249)
Q Consensus 13 ~~~~~~~~~~~~~~~~s~~~~~~~~~---~~~~ssp~~~~~~~~-~~h~~~ER~----RR~~in~~~~~LrslvP~~~k~ 84 (249)
.||+....| -...+.++.++|++-+ +=++|-......+.+ ..-...+|. +++.++..+..
T Consensus 76 ~FyC~N~g~-~p~~i~~s~VnDGICDy~~CCDGSDE~~~~C~N~C~e~~~~~~~~~~~~~~~~~~G~~~----------- 143 (176)
T PF12999_consen 76 KFYCENKGH-IPRYIPSSRVNDGICDYDICCDGSDESGGKCPNTCAELGKEYREELEEEEEIYKEGLKI----------- 143 (176)
T ss_pred eEeeccCCC-CCceeehhhhcCCcCcccccCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 466665544 4566788899999988 777776633322222 111111222 22333333333
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025727 85 DKASIIKDAIDYIQELHEQEKRIRDEIMELE 115 (249)
Q Consensus 85 dKasIl~~ai~yI~~Lq~~~~~L~~~~~~l~ 115 (249)
|..++.+|-.-...++.++.+|+.++...+
T Consensus 144 -r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 144 -RQELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334456666667777777777777766544
No 128
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=55.86 E-value=30 Score=24.02 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=26.4
Q ss_pred eeEEEEEEcC----CCCChHHHHHHHHHhCCCeEEEEE
Q 025727 169 KILVVSVTCS----KRTDTMVKLCEAFESLKLKIITAN 202 (249)
Q Consensus 169 ~~~~I~I~C~----~~~g~L~~Il~aLesl~L~Vvsa~ 202 (249)
+-..|+|.++ ..+|.+.++..+|-+.|+.|...+
T Consensus 5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 3455666665 368999999999999999998777
No 129
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=53.74 E-value=67 Score=36.14 Aligned_cols=54 Identities=11% Similarity=0.058 Sum_probs=43.2
Q ss_pred ceeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEE---EEee--CCEEEEEEEEEeccc
Q 025727 168 EKILVVSVTCSKRTDTMVKLCEAFESLKLKIITAN---ITAV--AGRLLKTAFIEVRFL 221 (249)
Q Consensus 168 ~~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~---is~~--~~~vl~ti~vev~~~ 221 (249)
++.+.++|.....+..|++|+-+|+++||.|+... +.+. ....+|.|.++....
T Consensus 487 ~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~ 545 (1528)
T PF05088_consen 487 PGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDG 545 (1528)
T ss_pred CCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCC
Confidence 35688999988889999999999999999999985 4442 224477888888765
No 130
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=53.52 E-value=31 Score=25.06 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025727 90 IKDAIDYIQELHEQEKRIRDEIMELE 115 (249)
Q Consensus 90 l~~ai~yI~~Lq~~~~~L~~~~~~l~ 115 (249)
+..||+-|..||.++.+|+.+...+.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 78899999999999999999866554
No 131
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.48 E-value=26 Score=25.54 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025727 90 IKDAIDYIQELHEQEKRIRDEIMELE 115 (249)
Q Consensus 90 l~~ai~yI~~Lq~~~~~L~~~~~~l~ 115 (249)
++.||+-|.-||-.+++|++++..|.
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~ 38 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhH
Confidence 78899999999999999999887653
No 132
>PRK11898 prephenate dehydratase; Provisional
Probab=50.46 E-value=54 Score=29.80 Aligned_cols=50 Identities=14% Similarity=0.070 Sum_probs=39.7
Q ss_pred EEEEEcCC-CCChHHHHHHHHHhCCCeEEEEEEEeeCCEEE-EEEEEEeccc
Q 025727 172 VVSVTCSK-RTDTMVKLCEAFESLKLKIITANITAVAGRLL-KTAFIEVRFL 221 (249)
Q Consensus 172 ~I~I~C~~-~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl-~ti~vev~~~ 221 (249)
.|-+..++ ++|.|.++|..|...|+.+++-.+-+..+..+ |.|.+++++.
T Consensus 198 slif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~ 249 (283)
T PRK11898 198 SLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH 249 (283)
T ss_pred EEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc
Confidence 34455554 59999999999999999999999888766554 6888888765
No 133
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=49.93 E-value=75 Score=30.28 Aligned_cols=45 Identities=9% Similarity=0.172 Sum_probs=39.0
Q ss_pred cCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEE-EEEEEEEeccc
Q 025727 177 CSKRTDTMVKLCEAFESLKLKIITANITAVAGRL-LKTAFIEVRFL 221 (249)
Q Consensus 177 C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~v-l~ti~vev~~~ 221 (249)
-++++|.|.++|.+|...|++.+.-.+-+..+.. -|.|.+++++.
T Consensus 304 ~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~ 349 (386)
T PRK10622 304 TGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQAN 349 (386)
T ss_pred cCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCC
Confidence 3689999999999999999999999988777775 45999999875
No 134
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=47.63 E-value=80 Score=22.54 Aligned_cols=47 Identities=15% Similarity=0.282 Sum_probs=32.8
Q ss_pred eeeEEEEecceeEEEEEEcCCC------CChHHHHHHHHHhCCCeEEEEEEEee
Q 025727 159 LELRVKTMGEKILVVSVTCSKR------TDTMVKLCEAFESLKLKIITANITAV 206 (249)
Q Consensus 159 ~eV~V~~~g~~~~~I~I~C~~~------~g~L~~Il~aLesl~L~Vvsa~is~~ 206 (249)
..|.+... ++.+.|.|.+... ..-+..+-++|...|+.+.+.++...
T Consensus 27 v~v~l~~~-~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~ 79 (85)
T PF02120_consen 27 VEVKLRLQ-GGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQG 79 (85)
T ss_dssp EEEEEEEE-TTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS
T ss_pred EEEEEEEe-CCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 35566444 4588999999864 34577889999999999998887654
No 135
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=46.34 E-value=62 Score=29.10 Aligned_cols=48 Identities=4% Similarity=0.255 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhccCCCCCCC---------------------CcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025727 64 RKKLNERLFALRSVVPNISKM---------------------DKASIIKDAIDYIQELHEQEKRIRDEIMEL 114 (249)
Q Consensus 64 R~~in~~~~~LrslvP~~~k~---------------------dKasIl~~ai~yI~~Lq~~~~~L~~~~~~l 114 (249)
|+-|...|..|+..=.. .|. -.+.||.++ =|+.++.+|++|+.++.+.
T Consensus 6 ~qLI~~lf~RL~~ae~~-prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~--AL~~a~~ri~eLe~ql~q~ 74 (247)
T PF09849_consen 6 RQLIDDLFSRLKQAEAQ-PRDPEAEALIAQALARQPDAPYYLAQTVLVQEQ--ALKQAQARIQELEAQLQQA 74 (247)
T ss_pred HHHHHHHHHHHHhccCC-CCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 56888899999887333 332 122222222 2677888888888887664
No 136
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=46.30 E-value=60 Score=31.85 Aligned_cols=49 Identities=10% Similarity=0.193 Sum_probs=38.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEE--EEEEEEeccc
Q 025727 173 VSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLL--KTAFIEVRFL 221 (249)
Q Consensus 173 I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl--~ti~vev~~~ 221 (249)
|-++..+++|.|.++|..|+..|+++++-..-+..+... +.|.|++++.
T Consensus 34 LIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~ 84 (464)
T TIGR01270 34 IIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELF 84 (464)
T ss_pred EEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcC
Confidence 334446689999999999999999999998877755543 6788887754
No 137
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=46.11 E-value=35 Score=30.98 Aligned_cols=67 Identities=6% Similarity=0.006 Sum_probs=53.7
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEE--EEEEEecccchhhhhhhhhhhhhh
Q 025727 170 ILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLK--TAFIEVRFLFFSLFFSTYHHQLFL 236 (249)
Q Consensus 170 ~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~--ti~vev~~~~~~~l~~~~~~~~~~ 236 (249)
.-+|++.-.+.+|.+.+|-.+|-.-|..|-+--+.-....-+. ||++.-.+..+.+.+.-+...+.-
T Consensus 77 rHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV 145 (309)
T KOG2663|consen 77 RHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNV 145 (309)
T ss_pred ceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhh
Confidence 4567888888999999999999999999988888877787777 999998888676665555555443
No 138
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=45.84 E-value=71 Score=25.84 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=38.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCC--CeEEEEEEEeeCCEEEEEEEEEecccchhhhhhh
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLK--LKIITANITAVAGRLLKTAFIEVRFLFFSLFFST 229 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~--L~Vvsa~is~~~~~vl~ti~vev~~~~~~~l~~~ 229 (249)
++-|..++.||.|+.|+++|-..+ |+-+-|-++.- .+.+..+.++=-+.+...|.++
T Consensus 71 VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~KAlli~r~ed~d~~~~aLed~ 129 (142)
T COG4747 71 VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QKALLIVRVEDIDRAIKALEDA 129 (142)
T ss_pred EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC-ceEEEEEEhhHHHHHHHHHHHc
Confidence 466777889999999999998876 55566666554 5555555544333355555554
No 139
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.70 E-value=87 Score=20.71 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=25.0
Q ss_pred EEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEe
Q 025727 173 VSVTCS---KRTDTMVKLCEAFESLKLKIITANITA 205 (249)
Q Consensus 173 I~I~C~---~~~g~L~~Il~aLesl~L~Vvsa~is~ 205 (249)
|.|.+. ..++.+.+++.+|.+.|+.|.-.+.+.
T Consensus 4 isivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 4 IMVVGEGMKNTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred EEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 444443 468999999999999999997665443
No 140
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=44.84 E-value=82 Score=30.68 Aligned_cols=47 Identities=6% Similarity=0.092 Sum_probs=37.2
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEE-EEEEEEEeccc
Q 025727 175 VTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRL-LKTAFIEVRFL 221 (249)
Q Consensus 175 I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~v-l~ti~vev~~~ 221 (249)
+...+++|.|.+||.+|...|+++++-.+-+..+.. -|.|.|++++.
T Consensus 21 FsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg~ 68 (436)
T TIGR01268 21 FSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDEA 68 (436)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEecC
Confidence 333668999999999999999999999887765444 45888888654
No 141
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=44.07 E-value=48 Score=24.60 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025727 90 IKDAIDYIQELHEQEKRIRDEIMELES 116 (249)
Q Consensus 90 l~~ai~yI~~Lq~~~~~L~~~~~~l~s 116 (249)
++.||+-|.-||-++++|+.+...|..
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~ 39 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999998877754
No 142
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=41.29 E-value=6.9 Score=39.96 Aligned_cols=60 Identities=18% Similarity=0.329 Sum_probs=49.1
Q ss_pred CchhhhcchhHHHHHHHHHHHHHHHhccCCCC-----CCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 025727 50 SSAASKNIVSERNRRKKLNERLFALRSVVPNI-----SKMDKASIIKDAIDYIQELHEQEKRIRDEIM 112 (249)
Q Consensus 50 ~~~~~~h~~~ER~RR~~in~~~~~LrslvP~~-----~k~dKasIl~~ai~yI~~Lq~~~~~L~~~~~ 112 (249)
.-.++.|+..+|++|-.+.+.|..|-.|.|.+ .+.++++||. +.|+.+++.-+.+.+...
T Consensus 785 ~~v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~ 849 (856)
T KOG3582|consen 785 GMVSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIE 849 (856)
T ss_pred ceeecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhh
Confidence 34568899999999999999999999999964 5578999999 888888877666665443
No 143
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=41.27 E-value=1.1e+02 Score=20.67 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=22.2
Q ss_pred EEEEcC---CCCChHHHHHHHHHhCCCeEE
Q 025727 173 VSVTCS---KRTDTMVKLCEAFESLKLKII 199 (249)
Q Consensus 173 I~I~C~---~~~g~L~~Il~aLesl~L~Vv 199 (249)
|.|.+. ..+|.+.+++.+|...|+.|.
T Consensus 4 isvvG~~~~~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 4 VTIIGSRIRGVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred EEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence 444444 469999999999999999996
No 144
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=40.29 E-value=48 Score=32.66 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=32.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAV 206 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~ 206 (249)
-++|.|.+|-|+-.+|++.|-..++++....|.+.
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~ 36 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI 36 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC
Confidence 47899999999999999999999999999998655
No 145
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=38.74 E-value=1.3e+02 Score=20.85 Aligned_cols=26 Identities=8% Similarity=0.142 Sum_probs=22.1
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEE
Q 025727 179 KRTDTMVKLCEAFESLKLKIITANIT 204 (249)
Q Consensus 179 ~~~g~L~~Il~aLesl~L~Vvsa~is 204 (249)
..++.+.+++++|.+.++.|.-.+.+
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 13 GVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEec
Confidence 46889999999999999999766654
No 146
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=38.25 E-value=2e+02 Score=27.45 Aligned_cols=63 Identities=11% Similarity=-0.067 Sum_probs=44.9
Q ss_pred ceeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEecc-cchhhhhhhh
Q 025727 168 EKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAV--AGRLLKTAFIEVRF-LFFSLFFSTY 230 (249)
Q Consensus 168 ~~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~--~~~vl~ti~vev~~-~~~~~l~~~~ 230 (249)
+..+.+.+.-+++||.|.++++.+-+.+.+|+..+.-.. .+.....+.+|+.+ +.+..+.+.+
T Consensus 323 ~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L 388 (409)
T TIGR02079 323 GLKHYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELNDKEDFAGLLERM 388 (409)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCCHHHHHHHHHHH
Confidence 567889999999999999999977777779988776532 23334457777776 3444455444
No 147
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=37.39 E-value=1.5e+02 Score=20.87 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=24.3
Q ss_pred EEEEEc---CCCCChHHHHHHHHHhCCCeEEEEE
Q 025727 172 VVSVTC---SKRTDTMVKLCEAFESLKLKIITAN 202 (249)
Q Consensus 172 ~I~I~C---~~~~g~L~~Il~aLesl~L~Vvsa~ 202 (249)
+|+|.+ ...+|.+.+|+++|...|+.|....
T Consensus 3 ~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 3 LLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred EEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE
Confidence 455533 3468999999999999999997765
No 148
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=36.97 E-value=3e+02 Score=24.39 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=32.5
Q ss_pred ceeEEEEEEcCCCCC--hHHHHHHHHHhCCCeEEEEEEEeeC
Q 025727 168 EKILVVSVTCSKRTD--TMVKLCEAFESLKLKIITANITAVA 207 (249)
Q Consensus 168 ~~~~~I~I~C~~~~g--~L~~Il~aLesl~L~Vvsa~is~~~ 207 (249)
+....+.|.|.+..+ ....+++.|++.++.+.+.++...+
T Consensus 140 ~~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~ 181 (225)
T PRK15385 140 EKRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQ 181 (225)
T ss_pred ceEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecC
Confidence 345788999987654 5788999999999999999997653
No 149
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=36.84 E-value=1.3e+02 Score=20.06 Aligned_cols=26 Identities=8% Similarity=0.120 Sum_probs=21.7
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEE
Q 025727 178 SKRTDTMVKLCEAFESLKLKIITANI 203 (249)
Q Consensus 178 ~~~~g~L~~Il~aLesl~L~Vvsa~i 203 (249)
++.+|.+.+++.+|.+.|+.|.-...
T Consensus 10 ~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 10 PDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 45789999999999999999965543
No 150
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.78 E-value=1.2e+02 Score=19.25 Aligned_cols=27 Identities=7% Similarity=0.123 Sum_probs=22.8
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEE
Q 025727 178 SKRTDTMVKLCEAFESLKLKIITANIT 204 (249)
Q Consensus 178 ~~~~g~L~~Il~aLesl~L~Vvsa~is 204 (249)
++.+|.+.+++.+|.+.|+.|...+.+
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 456899999999999999999776554
No 151
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=35.25 E-value=1.6e+02 Score=26.97 Aligned_cols=49 Identities=10% Similarity=0.155 Sum_probs=40.8
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEE-EEEEEeccc
Q 025727 173 VSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLK-TAFIEVRFL 221 (249)
Q Consensus 173 I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~-ti~vev~~~ 221 (249)
|-+.-++.||.|+++|..|...|++...-.+-+..+..+. .|.+++++.
T Consensus 197 l~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~ 246 (279)
T COG0077 197 LIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGH 246 (279)
T ss_pred EEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecC
Confidence 3334448999999999999999999999999888877755 888888876
No 152
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=34.12 E-value=2e+02 Score=21.55 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=41.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEecccchhhhhhhh
Q 025727 171 LVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAV--AGRLLKTAFIEVRFLFFSLFFSTY 230 (249)
Q Consensus 171 ~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~--~~~vl~ti~vev~~~~~~~l~~~~ 230 (249)
..+.+....+|+.|-+||.+.+.-|..|...+.++. ++..-.-|+|.-+. .+.-|+.-+
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~s~R-~~~lL~~QL 64 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVDSDR-SVDLLTSQL 64 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEcCCC-ChHHHHHHH
Confidence 345666777899999999999999999999998877 44444445544443 344444433
No 153
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=33.58 E-value=91 Score=22.36 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025727 88 SIIKDAIDYIQELHEQEKRIRDEIMELE 115 (249)
Q Consensus 88 sIl~~ai~yI~~Lq~~~~~L~~~~~~l~ 115 (249)
.-|++|+.-+.+|+.+++.|+.+++..+
T Consensus 40 ~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 40 RQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3489999999999999999999876654
No 154
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=33.52 E-value=1.5e+02 Score=27.75 Aligned_cols=53 Identities=19% Similarity=0.349 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHh---------ccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025727 63 RRKKLNERLFALR---------SVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELE 115 (249)
Q Consensus 63 RR~~in~~~~~Lr---------slvP~~~k~dKasIl~~ai~yI~~Lq~~~~~L~~~~~~l~ 115 (249)
|...++....+|- ++.|...+.+=+.+|.++-+..+.|+..+..|.+++.++.
T Consensus 38 r~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~q 99 (319)
T PF09789_consen 38 RYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQ 99 (319)
T ss_pred HHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666665555 2223234445567799999999999999999999887764
No 155
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=33.50 E-value=54 Score=33.79 Aligned_cols=43 Identities=9% Similarity=0.186 Sum_probs=40.5
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEE
Q 025727 171 LVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIE 217 (249)
Q Consensus 171 ~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~ve 217 (249)
.+++|...+++|+|..|+.+|. +|..+.+++.|..++..|.+.
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~ 674 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK 674 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec
Confidence 5799999999999999999999 999999999999999988887
No 156
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.34 E-value=1.4e+02 Score=20.26 Aligned_cols=29 Identities=3% Similarity=-0.062 Sum_probs=23.2
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEEEeeCC
Q 025727 180 RTDTMVKLCEAFESLKLKIITANITAVAG 208 (249)
Q Consensus 180 ~~g~L~~Il~aLesl~L~Vvsa~is~~~~ 208 (249)
.+|.+.+++.+|.+.|+.|.-.+..+.+-
T Consensus 13 ~~~~~~~i~~aL~~~~I~v~~i~~g~s~~ 41 (65)
T cd04918 13 SSLILERAFHVLYTKGVNVQMISQGASKV 41 (65)
T ss_pred CccHHHHHHHHHHHCCCCEEEEEecCccc
Confidence 57899999999999999997666554443
No 157
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=33.15 E-value=1.1e+02 Score=21.57 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025727 89 IIKDAIDYIQELHEQEKRIRDEIMELES 116 (249)
Q Consensus 89 Il~~ai~yI~~Lq~~~~~L~~~~~~l~s 116 (249)
=|.+|=...+.|..+++.|+.+.+++++
T Consensus 33 kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 33 KLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3899999999999999999999888764
No 158
>smart00338 BRLZ basic region leucin zipper.
Probab=32.98 E-value=68 Score=22.14 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 025727 94 IDYIQELHEQEKRIRDEIMELESG 117 (249)
Q Consensus 94 i~yI~~Lq~~~~~L~~~~~~l~s~ 117 (249)
-.||..|+.+++.|+.+...|...
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~ 48 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKE 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777666543
No 159
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=32.61 E-value=1.7e+02 Score=20.15 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=22.6
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEEEee
Q 025727 180 RTDTMVKLCEAFESLKLKIITANITAV 206 (249)
Q Consensus 180 ~~g~L~~Il~aLesl~L~Vvsa~is~~ 206 (249)
.+|.+.+++++|.+.|++|.-.+.+..
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s 40 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMR 40 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCC
Confidence 578999999999999999976666543
No 160
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=31.17 E-value=1.1e+02 Score=25.84 Aligned_cols=59 Identities=8% Similarity=0.110 Sum_probs=39.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEe--eCCEEEEEEEEEecccchhhhhhhh
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITA--VAGRLLKTAFIEVRFLFFSLFFSTY 230 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~--~~~~vl~ti~vev~~~~~~~l~~~~ 230 (249)
.+.+.-.+.+|.|..++..|-..|+.+-+-.+.. ..+...-|+.+..++..+.++-.-+
T Consensus 6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL 66 (163)
T COG0440 6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQL 66 (163)
T ss_pred EEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHH
Confidence 4666677889999999999998887776666554 3442233777777544455444333
No 161
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=30.97 E-value=78 Score=26.18 Aligned_cols=36 Identities=14% Similarity=0.375 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHH
Q 025727 65 KKLNERLFALRSVVPNISKMDKASIIKDAIDYIQEL 100 (249)
Q Consensus 65 ~~in~~~~~LrslvP~~~k~dKasIl~~ai~yI~~L 100 (249)
+-+-+|+.+|++++|+..+..-.+...-+..+++.+
T Consensus 49 ETl~ERi~ALkDm~Pp~~R~~i~~~~s~t~s~~ks~ 84 (145)
T TIGR00986 49 ETFTDRIYALKDIVPPTTRGWIYHKYSTTTNFVKST 84 (145)
T ss_pred CcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999865544444455555555544
No 162
>COG1259 Uncharacterized conserved protein [Function unknown]
Probab=30.77 E-value=1.9e+02 Score=24.17 Aligned_cols=44 Identities=23% Similarity=0.130 Sum_probs=36.3
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEE-EEEEEeccc
Q 025727 178 SKRTDTMVKLCEAFESLKLKIITANITAVAGRLLK-TAFIEVRFL 221 (249)
Q Consensus 178 ~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~-ti~vev~~~ 221 (249)
+.||-...-+.++|++++..|..+.|...-+.+++ +++++-++.
T Consensus 55 p~RP~tHdll~~i~~~l~~~v~kVvI~d~~d~tyyA~L~~~~~~~ 99 (151)
T COG1259 55 PPRPLTHDLLVEIFEELGARVEKVVIDDLIDNTYYATLILEQDDG 99 (151)
T ss_pred CCCCcHHHHHHHHHHHhCCcEEEEEEEEeccCeEEEEEEEEcCCc
Confidence 34677778888999999999999999887777766 888887774
No 163
>PRK08818 prephenate dehydrogenase; Provisional
Probab=30.47 E-value=1.5e+02 Score=28.11 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=35.8
Q ss_pred eEEEEEEcC-CCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccc
Q 025727 170 ILVVSVTCS-KRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRFL 221 (249)
Q Consensus 170 ~~~I~I~C~-~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~~ 221 (249)
.+.+.| + ++||.|.+|+.+|-..|+++.+-.+......... |.+.+...
T Consensus 297 ~l~~~v--~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~~~~ 346 (370)
T PRK08818 297 TLSVYL--PEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGFEPG 346 (370)
T ss_pred EEEEEC--CCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEEecc
Confidence 344444 5 7899999999999999999999888444443333 77776643
No 164
>PLN02317 arogenate dehydratase
Probab=30.09 E-value=2.5e+02 Score=26.87 Aligned_cols=44 Identities=7% Similarity=0.096 Sum_probs=36.3
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEEeeCCE---------------EEEEEEEEeccc
Q 025727 178 SKRTDTMVKLCEAFESLKLKIITANITAVAGR---------------LLKTAFIEVRFL 221 (249)
Q Consensus 178 ~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~---------------vl~ti~vev~~~ 221 (249)
+.++|.|.++|.+|...|+++++-..-+..+. .-|.|.++++..
T Consensus 291 ~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg~ 349 (382)
T PLN02317 291 EEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEAS 349 (382)
T ss_pred CCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEcC
Confidence 56899999999999999999999988776554 457888877664
No 165
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.57 E-value=1.7e+02 Score=19.20 Aligned_cols=34 Identities=18% Similarity=0.188 Sum_probs=25.1
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEEEe
Q 025727 172 VVSVTCS---KRTDTMVKLCEAFESLKLKIITANITA 205 (249)
Q Consensus 172 ~I~I~C~---~~~g~L~~Il~aLesl~L~Vvsa~is~ 205 (249)
+|.|.+. ..++.+.+++++|.+.|+.|.-.+.+.
T Consensus 3 ~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 3444444 458999999999999999986665443
No 166
>PHA03386 P10 fibrous body protein; Provisional
Probab=29.47 E-value=1.3e+02 Score=23.08 Aligned_cols=34 Identities=24% Similarity=0.458 Sum_probs=27.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025727 84 MDKASIIKDAIDYIQELHEQEKRIRDEIMELESG 117 (249)
Q Consensus 84 ~dKasIl~~ai~yI~~Lq~~~~~L~~~~~~l~s~ 117 (249)
|+|.+||.--..-|+.+-.++..|+..+..++..
T Consensus 1 MSKpnILl~Ir~dIkavd~KVdaLQ~qV~dv~~n 34 (94)
T PHA03386 1 MSKPSVLTQILDAVQEVDTKVDALQTQLNGLEED 34 (94)
T ss_pred CCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 6888998888888888878888888777777654
No 167
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=28.30 E-value=6.3e+02 Score=25.50 Aligned_cols=57 Identities=32% Similarity=0.416 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCC----------Cc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025727 61 RNRRKKLNERLFALRSVVPNISKM----------DK-------ASIIKDAIDYIQELHEQEKRIRDEIMELESG 117 (249)
Q Consensus 61 R~RR~~in~~~~~LrslvP~~~k~----------dK-------asIl~~ai~yI~~Lq~~~~~L~~~~~~l~s~ 117 (249)
.++..++++.+..|++..|..... +- ..-+++..+-+..|.++.++|++++++++..
T Consensus 49 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~ 122 (646)
T PRK05771 49 RSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQE 122 (646)
T ss_pred HHHHHHHHHHHHHHHHhccccccchhhhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677899999998887753211 11 1124455566666666666666666665544
No 168
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.05 E-value=1.8e+02 Score=18.73 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=21.4
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEE
Q 025727 179 KRTDTMVKLCEAFESLKLKIITANI 203 (249)
Q Consensus 179 ~~~g~L~~Il~aLesl~L~Vvsa~i 203 (249)
..++.+.+++.+|.+.++.|...+.
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 12 SHPGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEc
Confidence 3589999999999999999877764
No 169
>PRK14637 hypothetical protein; Provisional
Probab=26.90 E-value=3.4e+02 Score=22.38 Aligned_cols=56 Identities=13% Similarity=-0.068 Sum_probs=39.6
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccc----chhhhhhhhhhhh
Q 025727 179 KRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRFL----FFSLFFSTYHHQL 234 (249)
Q Consensus 179 ~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~~----~~~~l~~~~~~~~ 234 (249)
+.-|.+..+-.+++++|++++...+...++.-+..|.+.-+++ .|..+...++.++
T Consensus 6 ~~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~ID~~~gV~iddC~~vSr~Is~~L 65 (151)
T PRK14637 6 KDLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAVIYSAGGVGLDDCARVHRILVPRL 65 (151)
T ss_pred ccccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3457788888899999999999999988887666666654443 4455555444433
No 170
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=26.83 E-value=1.7e+02 Score=19.57 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025727 90 IKDAIDYIQELHEQEKRIRDEIMELES 116 (249)
Q Consensus 90 l~~ai~yI~~Lq~~~~~L~~~~~~l~s 116 (249)
...+-++|+.|..++..+.++++.|+.
T Consensus 18 Q~~v~~~lq~Lt~kL~~vs~RLe~LEn 44 (47)
T PF10393_consen 18 QNKVTSALQSLTQKLDAVSKRLEALEN 44 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888999999999999999888874
No 171
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=26.66 E-value=1.7e+02 Score=24.96 Aligned_cols=64 Identities=11% Similarity=0.101 Sum_probs=41.0
Q ss_pred ceeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEE--EEEeeCCEEEEEEEEEe----ccc-chhhhhhhhh
Q 025727 168 EKILVVSVTCSKRTDTMVKLCEAFESLKLKIITA--NITAVAGRLLKTAFIEV----RFL-FFSLFFSTYH 231 (249)
Q Consensus 168 ~~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa--~is~~~~~vl~ti~vev----~~~-~~~~l~~~~~ 231 (249)
...+.|.+...+++|++-++.+.|..+|+.+.+- ......+.----||+++ +-. ..+.+++.+.
T Consensus 90 ~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~~~i~~l~~~f~ 160 (176)
T COG2716 90 PAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPANLSISALRDAFE 160 (176)
T ss_pred CceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCcCcHHHHHHHHH
Confidence 3457788888899999999999999999777554 34333333322344433 222 4555665554
No 172
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=26.62 E-value=1.1e+02 Score=21.09 Aligned_cols=18 Identities=39% Similarity=0.601 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025727 96 YIQELHEQEKRIRDEIME 113 (249)
Q Consensus 96 yI~~Lq~~~~~L~~~~~~ 113 (249)
||..|+.++..|+.+...
T Consensus 27 ~~~~Le~~~~~L~~en~~ 44 (64)
T PF00170_consen 27 YIEELEEKVEELESENEE 44 (64)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 173
>PHA00003 B internal scaffolding protein
Probab=26.51 E-value=91 Score=24.61 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=17.0
Q ss_pred hhhcchhHHHHHHHHHHHHHHHh
Q 025727 53 ASKNIVSERNRRKKLNERLFALR 75 (249)
Q Consensus 53 ~~~h~~~ER~RR~~in~~~~~Lr 75 (249)
-..|..+||+.|..|...=..-+
T Consensus 53 vq~d~EaERqkr~~iEagk~~c~ 75 (120)
T PHA00003 53 VQQDLEAERQKRADIEAGKAICA 75 (120)
T ss_pred ccchHHHHHHHHHHHHHHHHHHH
Confidence 46789999999988876544443
No 174
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=25.95 E-value=3.4e+02 Score=24.50 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=15.9
Q ss_pred hhhhc-chhHHHHHHHHHHHHHHH
Q 025727 52 AASKN-IVSERNRRKKLNERLFAL 74 (249)
Q Consensus 52 ~~~~h-~~~ER~RR~~in~~~~~L 74 (249)
.|..| ..-|+--|.+++.+..+=
T Consensus 59 ~RL~HLS~EEK~~RrKLKNRVAAQ 82 (292)
T KOG4005|consen 59 RRLDHLSWEEKVQRRKLKNRVAAQ 82 (292)
T ss_pred HhhcccCHHHHHHHHHHHHHHHHh
Confidence 45566 457777788888887654
No 175
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.86 E-value=2.5e+02 Score=19.98 Aligned_cols=26 Identities=4% Similarity=0.032 Sum_probs=22.1
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEE
Q 025727 178 SKRTDTMVKLCEAFESLKLKIITANI 203 (249)
Q Consensus 178 ~~~~g~L~~Il~aLesl~L~Vvsa~i 203 (249)
+..+|.+.+|+++|...|+.|-....
T Consensus 12 ~~~~g~~~~IF~~La~~~I~VDmI~~ 37 (75)
T cd04932 12 LHAQGFLAKVFGILAKHNISVDLITT 37 (75)
T ss_pred CCCcCHHHHHHHHHHHcCCcEEEEee
Confidence 45699999999999999988877753
No 176
>PF05295 Luciferase_N: Luciferase/LBP N-terminal domain; InterPro: IPR007959 Proteins in this entry belong to a family of dinoflagellate luciferase and luciferin binding proteins. Luciferase is involved in catalysing the light emitting reaction in bioluminescence and luciferin binding protein (LBP) is known to bind to luciferin (the substrate for luciferase) to stop it reacting with the enzyme and therefore switching off the bioluminescence function. The expression of these two proteins is controlled by a circadian clock at the translational level, with synthesis and degradation occurring on a daily basis []. This entry consists of a presumed N-terminal domain that is conserved between dinoflagellate luciferase and luciferin binding proteins. This domain is not, however, the catalytic part of the protein. It has been suggested that this region may mediate an interaction between LBP and Luciferase or their association with the vacuolar membrane []. More information about these proteins can be found at Protein of the Month: Luciferase [].
Probab=25.73 E-value=15 Score=27.12 Aligned_cols=16 Identities=25% Similarity=0.978 Sum_probs=12.3
Q ss_pred CCccchhhhhccccccccccc
Q 025727 1 MENLGEDYQQEYQNYWETKMF 21 (249)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (249)
+|.|.| |.|||.+..|
T Consensus 29 lesvsD-----FAn~WTs~ey 44 (82)
T PF05295_consen 29 LESVSD-----FANYWTSAEY 44 (82)
T ss_pred hhhHHH-----HHhhhhHHHH
Confidence 467788 9999987544
No 177
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.61 E-value=2.7e+02 Score=20.22 Aligned_cols=32 Identities=16% Similarity=0.318 Sum_probs=24.6
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhCCCeEEEEEE
Q 025727 172 VVSVTCS---KRTDTMVKLCEAFESLKLKIITANI 203 (249)
Q Consensus 172 ~I~I~C~---~~~g~L~~Il~aLesl~L~Vvsa~i 203 (249)
+|+|... ..+|.+.+|+++|...|+.|-....
T Consensus 3 ~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~q 37 (78)
T cd04933 3 MLDITSTRMLGQYGFLAKVFSIFETLGISVDVVAT 37 (78)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 4455443 4689999999999999988877743
No 178
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.69 E-value=2.1e+02 Score=26.37 Aligned_cols=29 Identities=31% Similarity=0.548 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCcchH
Q 025727 61 RNRRKKLNERLFALRSVVPNISKMDKASI 89 (249)
Q Consensus 61 R~RR~~in~~~~~LrslvP~~~k~dKasI 89 (249)
+.|...|...+..|+++......+|+..+
T Consensus 183 ~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL 211 (325)
T PF08317_consen 183 RERKAELEEELENLKQLVEEIESCDQEEL 211 (325)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCHHHH
Confidence 44567788888888888766666665444
No 179
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=23.71 E-value=1.6e+02 Score=18.64 Aligned_cols=31 Identities=32% Similarity=0.462 Sum_probs=27.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025727 85 DKASIIKDAIDYIQELHEQEKRIRDEIMELE 115 (249)
Q Consensus 85 dKasIl~~ai~yI~~Lq~~~~~L~~~~~~l~ 115 (249)
||.-|.-+++.-+++|-+.-..|+.++++++
T Consensus 4 dk~rifmEnV~AvqeLck~t~~Le~rI~ele 34 (36)
T PF13887_consen 4 DKERIFMENVGAVQELCKLTDNLETRIDELE 34 (36)
T ss_pred cHHHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 7788999999999999999999998888775
No 180
>PRK08639 threonine dehydratase; Validated
Probab=23.59 E-value=3.9e+02 Score=25.44 Aligned_cols=66 Identities=8% Similarity=-0.075 Sum_probs=43.3
Q ss_pred cceeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEeccc-chhhhhhhhhh
Q 025727 167 GEKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVA--GRLLKTAFIEVRFL-FFSLFFSTYHH 232 (249)
Q Consensus 167 g~~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~--~~vl~ti~vev~~~-~~~~l~~~~~~ 232 (249)
.+..+.+.+.-+++||.|.++++.+-+.+-+|+..+..... +.....+.+|+.+. .+..+.+.+..
T Consensus 333 ~~r~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~~~~~~~~~~v~v~iE~~~~~h~~~i~~~L~~ 401 (420)
T PRK08639 333 EGLKHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYLKKNNRETGPVLVGIELKDAEDYDGLIERMEA 401 (420)
T ss_pred cCCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEeecCCCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 35678899999999999999999666655588877654321 11123456677653 45555555443
No 181
>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function. The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.
Probab=23.22 E-value=2.6e+02 Score=22.29 Aligned_cols=42 Identities=17% Similarity=0.106 Sum_probs=29.4
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEEeccc
Q 025727 180 RTDTMVKLCEAFESLKLKIITANITAV-AGRLLKTAFIEVRFL 221 (249)
Q Consensus 180 ~~g~L~~Il~aLesl~L~Vvsa~is~~-~~~vl~ti~vev~~~ 221 (249)
||...--+.++|+.+|..|..+.|... +|.+..++.++-++.
T Consensus 51 RP~thdLl~~~l~~lg~~v~~V~I~~~~dg~f~A~L~l~~~~~ 93 (135)
T PF02577_consen 51 RPLTHDLLSDLLEALGAEVERVVIDDLEDGVFYARLVLRQGGE 93 (135)
T ss_dssp S--HHHHHHHHHHHTTEEEEEEEEEEEETTEEEEEEEEEETTT
T ss_pred CCCHHHHHHHHHHHcCCEEEEEEEEEEECCEEEEEEEEecCCE
Confidence 454444555678999999999999976 455555888886553
No 182
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=23.07 E-value=2.2e+02 Score=24.49 Aligned_cols=49 Identities=10% Similarity=0.021 Sum_probs=36.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecc
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRF 220 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~ 220 (249)
-++|..++++|.|.+|-..+-++|.+++.++--...+--...|..++++
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEg 52 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEG 52 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeC
Confidence 3678888999999999999999999999997544333223344445544
No 183
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=22.93 E-value=1.2e+02 Score=29.44 Aligned_cols=57 Identities=21% Similarity=0.292 Sum_probs=40.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecccchhhhhhhh
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRFLFFSLFFSTY 230 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~~~~~~l~~~~ 230 (249)
-|+|.|.+|-|+.-++++.|-.-++++-...| ...|++ |--.-..+.+.++.|+..+
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEi-d~~~~I-Yln~p~l~~~~fs~L~aei 58 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEI-DPIGRI-YLNFPELEFESFSSLMAEI 58 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceee-cCCCeE-EEeccccCHHHHHHHHHHH
Confidence 48899999999999999999999888887777 334443 3333345555566666554
No 184
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=22.74 E-value=4.4e+02 Score=25.72 Aligned_cols=63 Identities=17% Similarity=0.188 Sum_probs=37.1
Q ss_pred cchhHHHHHHHHHHHHHHHhccCCCCCC--C--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025727 56 NIVSERNRRKKLNERLFALRSVVPNISK--M--DKASIIKDAIDYIQELHEQEKRIRDEIMELESGK 118 (249)
Q Consensus 56 h~~~ER~RR~~in~~~~~LrslvP~~~k--~--dKasIl~~ai~yI~~Lq~~~~~L~~~~~~l~s~~ 118 (249)
....-+.|-..|.+.+..+...+-.... . ....-+......+..|++++..|+..+..++...
T Consensus 164 Q~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~ 230 (475)
T PF10359_consen 164 QIELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDSE 230 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3344455556666666666555443221 1 1122355566677888888888888877776543
No 185
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=21.81 E-value=2.1e+02 Score=20.45 Aligned_cols=32 Identities=9% Similarity=0.264 Sum_probs=25.4
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEE
Q 025727 170 ILVVSVTCSKRTDTMVKLCEAFESLKLKIITANI 203 (249)
Q Consensus 170 ~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~i 203 (249)
-++|+|.| .+....+|++..+.++..|+..+-
T Consensus 4 l~LiKV~~--~~~~r~ei~~l~~~f~a~ivd~~~ 35 (75)
T PF10369_consen 4 LALIKVKA--TPENRSEILQLAEIFRARIVDVSP 35 (75)
T ss_dssp EEEEEEE---SCHHHHHHHHHHHHTT-EEEEEET
T ss_pred EEEEEEEC--CccCHHHHHHHHHHhCCEEEEECC
Confidence 47899999 467889999999999999988764
No 186
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=21.44 E-value=3.1e+02 Score=19.42 Aligned_cols=24 Identities=4% Similarity=0.187 Sum_probs=20.9
Q ss_pred CCChHHHHHHHHHhCCCeEEEEEE
Q 025727 180 RTDTMVKLCEAFESLKLKIITANI 203 (249)
Q Consensus 180 ~~g~L~~Il~aLesl~L~Vvsa~i 203 (249)
.+|.+.+|+++|...|+.|-....
T Consensus 14 ~~g~~~~If~~la~~~I~vd~I~~ 37 (73)
T cd04934 14 SHGFLARIFAILDKYRLSVDLIST 37 (73)
T ss_pred ccCHHHHHHHHHHHcCCcEEEEEe
Confidence 589999999999999988877753
No 187
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=21.37 E-value=4.9e+02 Score=25.63 Aligned_cols=61 Identities=11% Similarity=0.116 Sum_probs=40.8
Q ss_pred ceeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCC-EEEEEEEEEeccc-chhhhhhhh
Q 025727 168 EKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAG-RLLKTAFIEVRFL-FFSLFFSTY 230 (249)
Q Consensus 168 ~~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~-~vl~ti~vev~~~-~~~~l~~~~ 230 (249)
+..+++.|+=+.+||.|.+++++|-. .+|+..+....+. ..-..+.+++.+. .+..+.+.+
T Consensus 323 ~re~~l~V~iPerPGal~~f~~~i~~--~nItef~yr~~~~~~a~v~vgie~~~~~~~~~l~~~L 385 (499)
T TIGR01124 323 QREALLAVTIPEQPGSFLKFCELLGN--RNITEFNYRYADRKDAHIFVGVQLSNPQERQEILARL 385 (499)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhh--cceEEEEEEecCCCeEEEEEEEEeCCHHHHHHHHHHH
Confidence 56789999999999999999999987 4666666553332 2233455666642 344444444
No 188
>PRK12483 threonine dehydratase; Reviewed
Probab=21.28 E-value=4.7e+02 Score=26.01 Aligned_cols=62 Identities=10% Similarity=0.108 Sum_probs=42.1
Q ss_pred ceeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-CEEEEEEEEEeccc-ch-hhhhhhhh
Q 025727 168 EKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVA-GRLLKTAFIEVRFL-FF-SLFFSTYH 231 (249)
Q Consensus 168 ~~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~-~~vl~ti~vev~~~-~~-~~l~~~~~ 231 (249)
+..+.+.|.-+++||.|.+++..|-.. +|+..+....+ +..-..+.+++.+. .. ..+.+.+.
T Consensus 343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~~~~~~~~i~~~l~ 407 (521)
T PRK12483 343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHPRHDPRAQLLASLR 407 (521)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCChhhhHHHHHHHHH
Confidence 567889999999999999999999887 67766655322 22334566666543 33 45555543
No 189
>PF14992 TMCO5: TMCO5 family
Probab=20.58 E-value=1.6e+02 Score=27.07 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025727 88 SIIKDAIDYIQELHEQEKRIRDEIME 113 (249)
Q Consensus 88 sIl~~ai~yI~~Lq~~~~~L~~~~~~ 113 (249)
.+..+++.||+.||+.+++++.+++.
T Consensus 144 ~l~eDq~~~i~klkE~L~rmE~ekE~ 169 (280)
T PF14992_consen 144 QLCEDQANEIKKLKEKLRRMEEEKEM 169 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34889999999999999999987655
No 190
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=20.47 E-value=1.6e+02 Score=16.73 Aligned_cols=17 Identities=12% Similarity=0.341 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025727 97 IQELHEQEKRIRDEIME 113 (249)
Q Consensus 97 I~~Lq~~~~~L~~~~~~ 113 (249)
|..|+.+|..|+.++..
T Consensus 3 ~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSE 19 (23)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56777888888777654
Done!