Query 025727
Match_columns 249
No_of_seqs 182 out of 1284
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 16:18:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 5.1E-17 1.7E-21 120.5 7.2 68 51-118 5-73 (82)
2 1nkp_A C-MYC, MYC proto-oncoge 99.6 6.8E-16 2.3E-20 115.9 6.1 66 50-115 4-72 (88)
3 1nkp_B MAX protein, MYC proto- 99.6 1.2E-15 4.1E-20 113.2 7.4 65 52-116 2-68 (83)
4 1hlo_A Protein (transcription 99.6 3.8E-16 1.3E-20 115.2 4.6 69 48-116 8-78 (80)
5 1nlw_A MAD protein, MAX dimeri 99.6 3.7E-15 1.3E-19 110.0 8.3 65 52-116 1-68 (80)
6 4h10_B Circadian locomoter out 99.5 5.8E-15 2E-19 106.3 5.7 59 49-107 5-64 (71)
7 1an4_A Protein (upstream stimu 99.5 2E-15 6.8E-20 107.0 2.1 55 50-104 3-63 (65)
8 1a0a_A BHLH, protein (phosphat 99.5 2.9E-15 9.8E-20 105.7 2.1 53 52-104 2-61 (63)
9 4ati_A MITF, microphthalmia-as 99.5 2.3E-14 7.9E-19 113.1 7.0 62 50-111 25-90 (118)
10 4h10_A ARYL hydrocarbon recept 99.4 3E-14 1E-18 103.2 2.5 52 50-101 7-62 (73)
11 3u5v_A Protein MAX, transcript 99.4 6.1E-14 2.1E-18 102.4 3.3 59 50-108 3-65 (76)
12 2ql2_B Neurod1, neurogenic dif 99.2 7.3E-12 2.5E-16 87.4 5.4 53 52-104 2-57 (60)
13 1mdy_A Protein (MYOD BHLH doma 99.2 6.9E-12 2.4E-16 89.6 4.8 55 50-104 10-66 (68)
14 4f3l_A Mclock, circadian locom 98.9 7.8E-10 2.7E-14 101.3 5.6 56 48-103 8-64 (361)
15 2lfh_A DNA-binding protein inh 98.8 1.4E-09 4.7E-14 77.1 1.0 48 55-102 17-67 (68)
16 4f3l_B BMAL1B; BHLH, PAS, circ 98.7 6.3E-09 2.2E-13 96.4 4.7 54 49-102 10-67 (387)
17 4ath_A MITF, microphthalmia-as 98.7 4E-08 1.4E-12 72.3 6.6 50 64-113 4-57 (83)
18 4aya_A DNA-binding protein inh 98.1 2.8E-06 9.5E-11 64.2 5.5 46 59-104 32-80 (97)
19 1zpv_A ACT domain protein; str 97.5 0.0012 4.2E-08 47.8 11.1 65 169-233 4-69 (91)
20 1u8s_A Glycine cleavage system 97.2 0.002 6.8E-08 53.4 9.9 63 170-232 6-68 (192)
21 2nyi_A Unknown protein; protei 97.0 0.0037 1.2E-07 52.2 9.4 63 169-231 4-70 (195)
22 2ko1_A CTR148A, GTP pyrophosph 96.5 0.021 7.3E-07 40.4 9.1 51 170-220 5-55 (88)
23 2nyi_A Unknown protein; protei 96.3 0.019 6.5E-07 47.8 9.1 66 168-234 91-163 (195)
24 1u8s_A Glycine cleavage system 95.8 0.091 3.1E-06 43.2 10.8 67 169-235 92-167 (192)
25 3p96_A Phosphoserine phosphata 95.3 0.08 2.7E-06 48.4 9.8 65 169-233 11-77 (415)
26 3o1l_A Formyltetrahydrofolate 94.9 0.14 4.9E-06 45.8 9.8 66 167-232 19-88 (302)
27 3obi_A Formyltetrahydrofolate 94.4 0.17 6E-06 44.9 9.1 65 169-233 5-73 (288)
28 3n0v_A Formyltetrahydrofolate 93.9 0.26 8.8E-06 43.7 9.2 63 170-232 8-73 (286)
29 3lou_A Formyltetrahydrofolate 93.9 0.23 7.9E-06 44.2 8.8 64 169-232 9-78 (292)
30 3nrb_A Formyltetrahydrofolate 93.7 0.28 9.5E-06 43.5 9.0 63 170-232 7-71 (287)
31 2f1f_A Acetolactate synthase i 92.9 0.22 7.4E-06 40.7 6.5 61 171-231 4-66 (164)
32 2pc6_A Probable acetolactate s 92.6 0.31 1.1E-05 39.9 7.0 63 171-233 5-69 (165)
33 2jhe_A Transcription regulator 92.3 0.45 1.5E-05 37.4 7.6 37 172-209 2-38 (190)
34 2fgc_A Acetolactate synthase, 91.6 0.59 2E-05 39.2 7.7 63 171-233 30-94 (193)
35 1y7p_A Hypothetical protein AF 88.3 0.98 3.4E-05 38.6 6.5 59 170-230 4-67 (223)
36 2f06_A Conserved hypothetical 81.0 5 0.00017 30.8 7.1 45 172-216 74-118 (144)
37 2wt7_A Proto-oncogene protein 64.6 20 0.00069 24.0 6.0 44 60-116 1-44 (63)
38 2f06_A Conserved hypothetical 63.0 22 0.00074 27.1 6.8 35 172-206 8-42 (144)
39 3luy_A Probable chorismate mut 59.4 45 0.0015 29.8 9.1 43 179-221 217-260 (329)
40 2qmx_A Prephenate dehydratase; 57.7 16 0.00054 32.1 5.6 45 177-221 207-252 (283)
41 2l5g_A GPS2 protein, G protein 56.8 17 0.00059 22.2 3.9 30 85-114 5-34 (38)
42 2oqq_A Transcription factor HY 53.0 15 0.00053 23.0 3.4 24 95-118 3-26 (42)
43 1zme_C Proline utilization tra 52.9 14 0.00048 24.6 3.6 25 94-118 43-67 (70)
44 2jee_A YIIU; FTSZ, septum, coi 51.8 21 0.00073 25.6 4.5 27 90-116 15-41 (81)
45 3mwb_A Prephenate dehydratase; 50.1 28 0.00097 30.9 6.1 51 171-221 202-254 (313)
46 1phz_A Protein (phenylalanine 50.0 8.7 0.0003 35.9 2.7 45 175-219 39-84 (429)
47 2re1_A Aspartokinase, alpha an 47.6 29 0.00099 27.3 5.3 35 168-202 101-138 (167)
48 3ra3_B P2F; coiled coil domain 46.7 15 0.00051 20.4 2.3 19 97-115 2-20 (28)
49 3he4_B Synzip5; heterodimeric 45.1 43 0.0015 20.6 4.5 25 90-114 5-29 (46)
50 1dh3_A Transcription factor CR 40.5 31 0.0011 22.6 3.6 22 95-116 22-43 (55)
51 2er8_A Regulatory protein Leu3 40.0 14 0.00047 24.9 1.9 21 95-115 49-69 (72)
52 2dnr_A Synaptojanin-1; RRM dom 39.8 42 0.0015 24.4 4.6 39 168-207 7-51 (91)
53 2ke4_A CDC42-interacting prote 38.6 67 0.0023 23.6 5.6 33 85-117 59-91 (98)
54 2qmw_A PDT, prephenate dehydra 37.1 43 0.0015 29.0 5.1 42 178-219 197-239 (267)
55 2dtj_A Aspartokinase; protein- 37.0 1.2E+02 0.0039 24.0 7.4 51 168-218 13-67 (178)
56 3dhx_A Methionine import ATP-b 33.5 1.2E+02 0.0042 21.9 6.5 40 181-221 35-74 (106)
57 2re1_A Aspartokinase, alpha an 33.3 63 0.0021 25.3 5.1 50 168-217 23-74 (167)
58 2lqj_A Mg2+ transport protein; 32.8 1.1E+02 0.0037 22.1 5.9 54 168-221 6-64 (94)
59 1kd8_B GABH BLL, GCN4 acid bas 32.2 52 0.0018 19.8 3.3 20 97-116 3-22 (36)
60 1gmj_A ATPase inhibitor; coile 32.0 1.1E+02 0.0039 21.9 5.7 45 64-116 35-79 (84)
61 2dgc_A Protein (GCN4); basic d 31.1 51 0.0018 22.1 3.6 21 95-115 30-50 (63)
62 2dt9_A Aspartokinase; protein- 30.3 1E+02 0.0035 23.9 5.9 51 168-218 14-68 (167)
63 1ufw_A Synaptojanin 2; RNP dom 29.4 36 0.0012 25.0 2.8 47 168-221 15-68 (95)
64 3c3g_A Alpha/beta peptide with 28.1 70 0.0024 18.9 3.3 20 97-116 2-21 (33)
65 2wq1_A General control protein 27.8 71 0.0024 18.9 3.3 19 97-115 2-20 (33)
66 3v86_A De novo design helix; c 27.5 58 0.002 17.9 2.6 19 96-114 1-19 (27)
67 1jnm_A Proto-oncogene C-JUN; B 27.2 66 0.0023 21.2 3.6 23 94-116 21-43 (62)
68 2akf_A Coronin-1A; coiled coil 26.4 97 0.0033 17.8 3.6 19 97-115 8-26 (32)
69 1hwt_C Protein (heme activator 26.4 22 0.00077 24.3 1.1 21 94-114 57-77 (81)
70 2oxj_A Hybrid alpha/beta pepti 26.2 79 0.0027 18.8 3.3 20 97-116 3-22 (34)
71 1gd2_E Transcription factor PA 25.6 72 0.0025 22.0 3.6 11 99-109 54-64 (70)
72 1t2k_D Cyclic-AMP-dependent tr 25.5 75 0.0026 20.9 3.6 21 95-115 22-42 (61)
73 2wuj_A Septum site-determining 24.9 71 0.0024 20.9 3.4 28 89-116 28-55 (57)
74 3c3f_A Alpha/beta peptide with 24.4 89 0.0031 18.5 3.3 20 97-116 3-22 (34)
75 2v4h_A NF-kappa-B essential mo 23.8 1.9E+02 0.0066 21.7 5.9 38 76-113 13-56 (110)
76 1pd7_B MAD1; PAH2, SIN3, eukar 23.8 1E+02 0.0036 17.2 3.4 19 84-102 2-20 (26)
77 1rwu_A Hypothetical UPF0250 pr 23.8 2E+02 0.0067 21.4 6.1 51 170-221 36-89 (109)
78 3m48_A General control protein 23.3 59 0.002 19.3 2.3 19 98-116 3-21 (33)
79 3p96_A Phosphoserine phosphata 23.1 2.7E+02 0.0092 24.5 8.0 63 170-232 101-164 (415)
80 2dt9_A Aspartokinase; protein- 22.9 1.5E+02 0.0052 22.9 5.7 35 168-202 93-130 (167)
81 1uii_A Geminin; human, DNA rep 22.6 1.3E+02 0.0043 21.6 4.5 20 57-77 32-51 (83)
82 1kd8_A GABH AIV, GCN4 acid bas 22.3 68 0.0023 19.3 2.5 19 97-115 3-21 (36)
83 1xkm_B Distinctin chain B; por 22.3 1.1E+02 0.0036 16.7 3.1 18 88-105 4-21 (26)
84 2dtj_A Aspartokinase; protein- 22.2 1.2E+02 0.0041 23.9 5.0 35 168-202 93-130 (178)
85 1pyi_A Protein (pyrimidine pat 21.8 1.2E+02 0.004 21.1 4.3 23 94-116 47-69 (96)
86 3w03_C DNA repair protein XRCC 20.9 1.2E+02 0.0041 24.9 4.7 29 88-116 145-173 (184)
87 2qrr_A Methionine import ATP-b 20.3 2.3E+02 0.008 20.0 7.1 49 172-221 25-76 (101)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.68 E-value=5.1e-17 Score=120.55 Aligned_cols=68 Identities=22% Similarity=0.506 Sum_probs=63.7
Q ss_pred chhhhcchhHHHHHHHHHHHHHHHhccCCCC-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025727 51 SAASKNIVSERNRRKKLNERLFALRSVVPNI-SKMDKASIIKDAIDYIQELHEQEKRIRDEIMELESGK 118 (249)
Q Consensus 51 ~~~~~h~~~ER~RR~~in~~~~~LrslvP~~-~k~dKasIl~~ai~yI~~Lq~~~~~L~~~~~~l~s~~ 118 (249)
.++..|+.+||+||++||+.|.+|+++||+. .|+||++||.+||+||++||.+++.|+.+...|+...
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999997 8999999999999999999999999999999887543
No 2
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.61 E-value=6.8e-16 Score=115.92 Aligned_cols=66 Identities=32% Similarity=0.491 Sum_probs=59.8
Q ss_pred CchhhhcchhHHHHHHHHHHHHHHHhccCCCC---CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025727 50 SSAASKNIVSERNRRKKLNERLFALRSVVPNI---SKMDKASIIKDAIDYIQELHEQEKRIRDEIMELE 115 (249)
Q Consensus 50 ~~~~~~h~~~ER~RR~~in~~~~~LrslvP~~---~k~dKasIl~~ai~yI~~Lq~~~~~L~~~~~~l~ 115 (249)
..+|..|+..||+||..||+.|..||++||.. .|++|++||.+||+||++|+.+.+.+..++..|.
T Consensus 4 ~~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 4 NVKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999975 6999999999999999999999998877766654
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.61 E-value=1.2e-15 Score=113.21 Aligned_cols=65 Identities=26% Similarity=0.474 Sum_probs=60.1
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHhccCCC--CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025727 52 AASKNIVSERNRRKKLNERLFALRSVVPN--ISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELES 116 (249)
Q Consensus 52 ~~~~h~~~ER~RR~~in~~~~~LrslvP~--~~k~dKasIl~~ai~yI~~Lq~~~~~L~~~~~~l~s 116 (249)
+|..|+..||+||..||+.|..|+++||. ..|++|++||..||+||+.|+.+++.|+.+++.|..
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999997 489999999999999999999999999888877754
No 4
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.60 E-value=3.8e-16 Score=115.22 Aligned_cols=69 Identities=25% Similarity=0.493 Sum_probs=63.5
Q ss_pred CCCchhhhcchhHHHHHHHHHHHHHHHhccCCCC--CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025727 48 AASSAASKNIVSERNRRKKLNERLFALRSVVPNI--SKMDKASIIKDAIDYIQELHEQEKRIRDEIMELES 116 (249)
Q Consensus 48 ~~~~~~~~h~~~ER~RR~~in~~~~~LrslvP~~--~k~dKasIl~~ai~yI~~Lq~~~~~L~~~~~~l~s 116 (249)
....+|..|+..||+||..||+.|..|+++||.. .|++|++||..||+||+.|+++++.|+.+++.|+.
T Consensus 8 ~~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 8 SDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred chHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456789999999999999999999999999975 69999999999999999999999999999988764
No 5
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.59 E-value=3.7e-15 Score=109.99 Aligned_cols=65 Identities=26% Similarity=0.338 Sum_probs=59.7
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHhccCCCC---CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025727 52 AASKNIVSERNRRKKLNERLFALRSVVPNI---SKMDKASIIKDAIDYIQELHEQEKRIRDEIMELES 116 (249)
Q Consensus 52 ~~~~h~~~ER~RR~~in~~~~~LrslvP~~---~k~dKasIl~~ai~yI~~Lq~~~~~L~~~~~~l~s 116 (249)
+|..|+..||+||..||+.|..|+++||.. .|++|++||.+|++||+.|+.+.+.|..+++.|..
T Consensus 1 ~R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~ 68 (80)
T 1nlw_A 1 SRSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQR 68 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999964 78899999999999999999999999998887753
No 6
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.54 E-value=5.8e-15 Score=106.31 Aligned_cols=59 Identities=25% Similarity=0.440 Sum_probs=53.3
Q ss_pred CCchhhhcchhHHHHHHHHHHHHHHHhccCCCC-CCCCcchHHHHHHHHHHHHHHHHHHH
Q 025727 49 ASSAASKNIVSERNRRKKLNERLFALRSVVPNI-SKMDKASIIKDAIDYIQELHEQEKRI 107 (249)
Q Consensus 49 ~~~~~~~h~~~ER~RR~~in~~~~~LrslvP~~-~k~dKasIl~~ai~yI~~Lq~~~~~L 107 (249)
...+|..|+.+||+||++||+.|.+|++|||.. .|+||++||..||+||+.||....=|
T Consensus 5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~ 64 (71)
T 4h10_B 5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWL 64 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHH
Confidence 456789999999999999999999999999974 69999999999999999999876543
No 7
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.52 E-value=2e-15 Score=107.02 Aligned_cols=55 Identities=33% Similarity=0.537 Sum_probs=50.1
Q ss_pred CchhhhcchhHHHHHHHHHHHHHHHhccCCCCC------CCCcchHHHHHHHHHHHHHHHH
Q 025727 50 SSAASKNIVSERNRRKKLNERLFALRSVVPNIS------KMDKASIIKDAIDYIQELHEQE 104 (249)
Q Consensus 50 ~~~~~~h~~~ER~RR~~in~~~~~LrslvP~~~------k~dKasIl~~ai~yI~~Lq~~~ 104 (249)
..++..|+.+||+||++||+.|.+|++|||.+. |++|++||.+||+||++||++.
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 346789999999999999999999999999864 7899999999999999999754
No 8
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.51 E-value=2.9e-15 Score=105.74 Aligned_cols=53 Identities=26% Similarity=0.417 Sum_probs=48.3
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHhccCCCC-------CCCCcchHHHHHHHHHHHHHHHH
Q 025727 52 AASKNIVSERNRRKKLNERLFALRSVVPNI-------SKMDKASIIKDAIDYIQELHEQE 104 (249)
Q Consensus 52 ~~~~h~~~ER~RR~~in~~~~~LrslvP~~-------~k~dKasIl~~ai~yI~~Lq~~~ 104 (249)
+|..|+.+||+||++||..|.+|++|||++ .+.+||+||+.||+||++||+++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999953 57789999999999999999654
No 9
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.50 E-value=2.3e-14 Score=113.07 Aligned_cols=62 Identities=27% Similarity=0.544 Sum_probs=52.3
Q ss_pred CchhhhcchhHHHHHHHHHHHHHHHhccCCCC----CCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q 025727 50 SSAASKNIVSERNRRKKLNERLFALRSVVPNI----SKMDKASIIKDAIDYIQELHEQEKRIRDEI 111 (249)
Q Consensus 50 ~~~~~~h~~~ER~RR~~in~~~~~LrslvP~~----~k~dKasIl~~ai~yI~~Lq~~~~~L~~~~ 111 (249)
..++..|+.+||+||++||++|.+|++|||.+ .|++|++||.+||+||++||.+++.|+...
T Consensus 25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999986 478899999999999999999999998753
No 10
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.43 E-value=3e-14 Score=103.23 Aligned_cols=52 Identities=29% Similarity=0.452 Sum_probs=48.7
Q ss_pred CchhhhcchhHHHHHHHHHHHHHHHhccCCCC----CCCCcchHHHHHHHHHHHHH
Q 025727 50 SSAASKNIVSERNRRKKLNERLFALRSVVPNI----SKMDKASIIKDAIDYIQELH 101 (249)
Q Consensus 50 ~~~~~~h~~~ER~RR~~in~~~~~LrslvP~~----~k~dKasIl~~ai~yI~~Lq 101 (249)
..++..|+.+||+||++||+.|.+|++|||.+ .|+||++||..||+||+.|+
T Consensus 7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~ 62 (73)
T 4h10_A 7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLR 62 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHh
Confidence 45688999999999999999999999999975 79999999999999999987
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.42 E-value=6.1e-14 Score=102.41 Aligned_cols=59 Identities=24% Similarity=0.317 Sum_probs=47.7
Q ss_pred CchhhhcchhHHHHHHHHHHHHHHHhccCCC---CCCC-CcchHHHHHHHHHHHHHHHHHHHH
Q 025727 50 SSAASKNIVSERNRRKKLNERLFALRSVVPN---ISKM-DKASIIKDAIDYIQELHEQEKRIR 108 (249)
Q Consensus 50 ~~~~~~h~~~ER~RR~~in~~~~~LrslvP~---~~k~-dKasIl~~ai~yI~~Lq~~~~~L~ 108 (249)
..+|..|+..||+||..||+.|.+||.+||. ..|. +|++||..||+||+.||+++++++
T Consensus 3 ~~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 3 ADKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3568899999999999999999999999995 3555 788999999999999998887653
No 12
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.24 E-value=7.3e-12 Score=87.36 Aligned_cols=53 Identities=38% Similarity=0.401 Sum_probs=48.8
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHhccCCCC---CCCCcchHHHHHHHHHHHHHHHH
Q 025727 52 AASKNIVSERNRRKKLNERLFALRSVVPNI---SKMDKASIIKDAIDYIQELHEQE 104 (249)
Q Consensus 52 ~~~~h~~~ER~RR~~in~~~~~LrslvP~~---~k~dKasIl~~ai~yI~~Lq~~~ 104 (249)
+|..|+..||+|+..||+.|..||++||.. .|.+|..||..||+||..|++.+
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L 57 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEIL 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHH
Confidence 577899999999999999999999999974 68999999999999999999764
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.23 E-value=6.9e-12 Score=89.59 Aligned_cols=55 Identities=25% Similarity=0.402 Sum_probs=50.1
Q ss_pred CchhhhcchhHHHHHHHHHHHHHHHhccCCC--CCCCCcchHHHHHHHHHHHHHHHH
Q 025727 50 SSAASKNIVSERNRRKKLNERLFALRSVVPN--ISKMDKASIIKDAIDYIQELHEQE 104 (249)
Q Consensus 50 ~~~~~~h~~~ER~RR~~in~~~~~LrslvP~--~~k~dKasIl~~ai~yI~~Lq~~~ 104 (249)
...|..|+..||+|+..||+.|..||++||. ..|++|+.||..||+||..|++.+
T Consensus 10 ~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4568889999999999999999999999997 378999999999999999999654
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.92 E-value=7.8e-10 Score=101.34 Aligned_cols=56 Identities=29% Similarity=0.500 Sum_probs=42.5
Q ss_pred CCCchhhhcchhHHHHHHHHHHHHHHHhccCC-CCCCCCcchHHHHHHHHHHHHHHH
Q 025727 48 AASSAASKNIVSERNRRKKLNERLFALRSVVP-NISKMDKASIIKDAIDYIQELHEQ 103 (249)
Q Consensus 48 ~~~~~~~~h~~~ER~RR~~in~~~~~LrslvP-~~~k~dKasIl~~ai~yI~~Lq~~ 103 (249)
....+|..|+.+||+||++||..|.+|++||| +..|+||++||..||+||+.|+..
T Consensus 8 ~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 8 KDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 34567899999999999999999999999999 568999999999999999999753
No 15
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.76 E-value=1.4e-09 Score=77.12 Aligned_cols=48 Identities=23% Similarity=0.412 Sum_probs=43.0
Q ss_pred hcchhHHHHHHHHHHHHHHHhccCCCC---CCCCcchHHHHHHHHHHHHHH
Q 025727 55 KNIVSERNRRKKLNERLFALRSVVPNI---SKMDKASIIKDAIDYIQELHE 102 (249)
Q Consensus 55 ~h~~~ER~RR~~in~~~~~LrslvP~~---~k~dKasIl~~ai~yI~~Lq~ 102 (249)
.-+..||+|+..||+.|..||.+||.. .|.+|..+|.-||+||..||.
T Consensus 17 ~a~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 17 PAAEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CCBCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 335679999999999999999999974 789999999999999999983
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.73 E-value=6.3e-09 Score=96.38 Aligned_cols=54 Identities=28% Similarity=0.405 Sum_probs=49.6
Q ss_pred CCchhhhcchhHHHHHHHHHHHHHHHhccCC----CCCCCCcchHHHHHHHHHHHHHH
Q 025727 49 ASSAASKNIVSERNRRKKLNERLFALRSVVP----NISKMDKASIIKDAIDYIQELHE 102 (249)
Q Consensus 49 ~~~~~~~h~~~ER~RR~~in~~~~~LrslvP----~~~k~dKasIl~~ai~yI~~Lq~ 102 (249)
...++..|+.+||+||++||..|.+|++||| ...|+||++||..||.||+.|+.
T Consensus 10 ~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 10 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred hhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 3567899999999999999999999999999 56899999999999999999874
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.67 E-value=4e-08 Score=72.25 Aligned_cols=50 Identities=28% Similarity=0.581 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhccCCCC----CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025727 64 RKKLNERLFALRSVVPNI----SKMDKASIIKDAIDYIQELHEQEKRIRDEIME 113 (249)
Q Consensus 64 R~~in~~~~~LrslvP~~----~k~dKasIl~~ai~yI~~Lq~~~~~L~~~~~~ 113 (249)
|..||+++.+|..|||.+ .|.+|++||..|++||++||+..+.+.++...
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r 57 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 57 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999964 57899999999999999999988888775443
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.15 E-value=2.8e-06 Score=64.23 Aligned_cols=46 Identities=28% Similarity=0.436 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHhccCCCC---CCCCcchHHHHHHHHHHHHHHHH
Q 025727 59 SERNRRKKLNERLFALRSVVPNI---SKMDKASIIKDAIDYIQELHEQE 104 (249)
Q Consensus 59 ~ER~RR~~in~~~~~LrslvP~~---~k~dKasIl~~ai~yI~~Lq~~~ 104 (249)
.||.|=..||+.|..||..||.. .|.+|..+|.-||+||..|++-+
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L 80 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIAL 80 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 45777789999999999999963 68999999999999999999654
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.55 E-value=0.0012 Score=47.78 Aligned_cols=65 Identities=11% Similarity=0.116 Sum_probs=53.6
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecc-cchhhhhhhhhhh
Q 025727 169 KILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRF-LFFSLFFSTYHHQ 233 (249)
Q Consensus 169 ~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~-~~~~~l~~~~~~~ 233 (249)
..+.|.|.|+++||++.+|..+|-+.|..|.+.+..+..+.+.-.+.+++++ ..+..+.+.+...
T Consensus 4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~~ 69 (91)
T 1zpv_A 4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAF 69 (91)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999988888888888888876 3455555555433
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=97.21 E-value=0.002 Score=53.39 Aligned_cols=63 Identities=13% Similarity=0.063 Sum_probs=53.2
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecccchhhhhhhhhh
Q 025727 170 ILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRFLFFSLFFSTYHH 232 (249)
Q Consensus 170 ~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~~~~~~l~~~~~~ 232 (249)
.++|.|.|++++|++..|..+|...|++|+.+++.+..|.+.-++.+..+......|+..+..
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~ 68 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPL 68 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCCCCHHHHHHHHHH
Confidence 578999999999999999999999999999999998899888888887765445556655543
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.99 E-value=0.0037 Score=52.24 Aligned_cols=63 Identities=16% Similarity=0.201 Sum_probs=51.1
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecccc----hhhhhhhhh
Q 025727 169 KILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRFLF----FSLFFSTYH 231 (249)
Q Consensus 169 ~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~~~----~~~l~~~~~ 231 (249)
..++|.|.|++++|++..|..+|.++|++|+.+++.+..|.+.-.+.+..+... ...|+..+.
T Consensus 4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~~~~~~~~~l~~~L~ 70 (195)
T 2nyi_A 4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALESALP 70 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSSSSHHHHHHHHHHST
T ss_pred eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCccchhHHHHHHHHHH
Confidence 357899999999999999999999999999999999888888778887765432 344555544
No 22
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=96.48 E-value=0.021 Score=40.43 Aligned_cols=51 Identities=12% Similarity=0.134 Sum_probs=42.9
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecc
Q 025727 170 ILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRF 220 (249)
Q Consensus 170 ~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~ 220 (249)
.+.|.|.+.+++|.|.+|..+|.+.|+.|.+.++...++.....|.+++.+
T Consensus 5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~ 55 (88)
T 2ko1_A 5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKN 55 (88)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESS
T ss_pred EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECC
Confidence 467889999999999999999999999999999988777445566677654
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.30 E-value=0.019 Score=47.83 Aligned_cols=66 Identities=5% Similarity=0.038 Sum_probs=51.2
Q ss_pred ceeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC------CEEEEEEEEEeccc-chhhhhhhhhhhh
Q 025727 168 EKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVA------GRLLKTAFIEVRFL-FFSLFFSTYHHQL 234 (249)
Q Consensus 168 ~~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~------~~vl~ti~vev~~~-~~~~l~~~~~~~~ 234 (249)
...++|.|.|++++|++..|..+|-++|+.|..+...+.+ +.++-.+.+.+... . ..|+..+....
T Consensus 91 ~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~~~-~~l~~~l~~~a 163 (195)
T 2nyi_A 91 TREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLY-QEVVTALSRVE 163 (195)
T ss_dssp EEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGH-HHHHHHHHHHH
T ss_pred CcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCCCcc-HHHHHHHHHHH
Confidence 3457899999999999999999999999999999988776 55555666665432 3 56666665443
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.76 E-value=0.091 Score=43.18 Aligned_cols=67 Identities=7% Similarity=0.038 Sum_probs=50.7
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--------CEEEEEEEEEeccc-chhhhhhhhhhhhh
Q 025727 169 KILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVA--------GRLLKTAFIEVRFL-FFSLFFSTYHHQLF 235 (249)
Q Consensus 169 ~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~--------~~vl~ti~vev~~~-~~~~l~~~~~~~~~ 235 (249)
...+|.|.|++++|++..|.++|.+.|++|..+...+.+ +.++-.+.+.+... ....|+..+.....
T Consensus 92 ~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~~~~ 167 (192)
T 1u8s_A 92 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDALCT 167 (192)
T ss_dssp EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999887664 34444666655433 45667777665443
No 25
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=95.33 E-value=0.08 Score=48.44 Aligned_cols=65 Identities=9% Similarity=0.055 Sum_probs=54.7
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccc--chhhhhhhhhhh
Q 025727 169 KILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRFL--FFSLFFSTYHHQ 233 (249)
Q Consensus 169 ~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~~--~~~~l~~~~~~~ 233 (249)
..++|.+.|++++|+...|..+|-++|.+|+.++-+..+|.++-.+.+.++.. .+..|++.+...
T Consensus 11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~~ 77 (415)
T 3p96_A 11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADVADGPALRHDVEAA 77 (415)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHHHTSHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCcCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999988888888765 235566665443
No 26
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=94.88 E-value=0.14 Score=45.79 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=51.8
Q ss_pred cceeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEeccc--chhhhhhhhhh
Q 025727 167 GEKILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAV--AGRLLKTAFIEVRFL--FFSLFFSTYHH 232 (249)
Q Consensus 167 g~~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~--~~~vl~ti~vev~~~--~~~~l~~~~~~ 232 (249)
|...+++.+.|++++|+...|...|-+.|+.|+.++-+.. +|.++-.+.+..++. .+..|++.+..
T Consensus 19 ~~~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~~~~~~~L~~~l~~ 88 (302)
T 3o1l_A 19 GMRTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTLPFDLDGFREAFTP 88 (302)
T ss_dssp CCCEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGSSSCHHHHHHHHHH
T ss_pred ccceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCCCCCHHHHHHHHHH
Confidence 4456889999999999999999999999999999988765 677766666666542 45566666543
No 27
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=94.42 E-value=0.17 Score=44.85 Aligned_cols=65 Identities=9% Similarity=0.145 Sum_probs=51.6
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE--eeCCEEEEEEEEEeccc--chhhhhhhhhhh
Q 025727 169 KILVVSVTCSKRTDTMVKLCEAFESLKLKIITANIT--AVAGRLLKTAFIEVRFL--FFSLFFSTYHHQ 233 (249)
Q Consensus 169 ~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is--~~~~~vl~ti~vev~~~--~~~~l~~~~~~~ 233 (249)
..++|.+.|++++|+...|...|-++|++|+.++-. ..+|.++-.+.+.+++. .+..|++.+...
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~L~~~f~~l 73 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKVIPLASLRTGFGVI 73 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCCCCHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCCCCHHHHHHHHHHH
Confidence 457899999999999999999999999999999864 45777777777777653 456666666443
No 28
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=93.94 E-value=0.26 Score=43.73 Aligned_cols=63 Identities=8% Similarity=-0.006 Sum_probs=49.3
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE--eeCCEEEEEEEEEeccc-chhhhhhhhhh
Q 025727 170 ILVVSVTCSKRTDTMVKLCEAFESLKLKIITANIT--AVAGRLLKTAFIEVRFL-FFSLFFSTYHH 232 (249)
Q Consensus 170 ~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is--~~~~~vl~ti~vev~~~-~~~~l~~~~~~ 232 (249)
.++|.+.|++++|+...|...|-+.|++|+.++-+ ..+|.++-.+.+..++. .+..|++.+..
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~L~~~f~~ 73 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPDDFDEAGFRAGLAE 73 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCSSCCHHHHHHHHHH
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCCCCCHHHHHHHHHH
Confidence 47899999999999999999999999999999877 45677766666665442 35556665543
No 29
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=93.87 E-value=0.23 Score=44.16 Aligned_cols=64 Identities=6% Similarity=0.198 Sum_probs=49.7
Q ss_pred eeEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE--eeCCEEEEEEEEEec--c--cchhhhhhhhhh
Q 025727 169 KILVVSVTCSKRTDTMVKLCEAFESLKLKIITANIT--AVAGRLLKTAFIEVR--F--LFFSLFFSTYHH 232 (249)
Q Consensus 169 ~~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is--~~~~~vl~ti~vev~--~--~~~~~l~~~~~~ 232 (249)
..+++.+.|++++|+...|...|-+.|++|+.++-. ..+|.++-.+.+..+ + ..+..|++.+..
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~~~~~L~~~f~~ 78 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDDADALRVDALRREFEP 78 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC----CCHHHHHHHHHH
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCcccCCCHHHHHHHHHH
Confidence 357899999999999999999999999999999877 456777666666665 3 245566666543
No 30
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=93.69 E-value=0.28 Score=43.52 Aligned_cols=63 Identities=13% Similarity=0.175 Sum_probs=47.3
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEE--eeCCEEEEEEEEEecccchhhhhhhhhh
Q 025727 170 ILVVSVTCSKRTDTMVKLCEAFESLKLKIITANIT--AVAGRLLKTAFIEVRFLFFSLFFSTYHH 232 (249)
Q Consensus 170 ~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is--~~~~~vl~ti~vev~~~~~~~l~~~~~~ 232 (249)
.++|.+.|++++|+...|...|-++|+.|+.++-. ..+|.++-.+.+..+...+..|++.+..
T Consensus 7 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~~~~L~~~f~~ 71 (287)
T 3nrb_A 7 QYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIPVAGVNDFNSAFGK 71 (287)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCC---CHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcCCCCHHHHHHHHHH
Confidence 57899999999999999999999999999999875 4567766666655544334456655543
No 31
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=92.94 E-value=0.22 Score=40.73 Aligned_cols=61 Identities=10% Similarity=0.029 Sum_probs=46.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEecccchhhhhhhhh
Q 025727 171 LVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVA--GRLLKTAFIEVRFLFFSLFFSTYH 231 (249)
Q Consensus 171 ~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~--~~vl~ti~vev~~~~~~~l~~~~~ 231 (249)
..|.|.+.+++|.|.+|..+|...|.+|.+.++.... +....+|.++.+...+.++...+.
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~ 66 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLH 66 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHH
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHc
Confidence 4688889999999999999999999999998887554 556667787744445555555444
No 32
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=92.60 E-value=0.31 Score=39.88 Aligned_cols=63 Identities=6% Similarity=0.034 Sum_probs=48.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC--CEEEEEEEEEecccchhhhhhhhhhh
Q 025727 171 LVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVA--GRLLKTAFIEVRFLFFSLFFSTYHHQ 233 (249)
Q Consensus 171 ~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~--~~vl~ti~vev~~~~~~~l~~~~~~~ 233 (249)
..|.|..++++|.|.+|..+|...|++|.+.++.... +....+|.+..++..+.++...+..+
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl 69 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKL 69 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHS
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCC
Confidence 4688889999999999999999999999998886544 66667888876555566655555433
No 33
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=92.33 E-value=0.45 Score=37.44 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=33.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCE
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGR 209 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~ 209 (249)
-|+|.|.+|.|++.+|+.+|.+.++++..+++.+. |.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~ 38 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GR 38 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TE
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CE
Confidence 47899999999999999999999999999999766 54
No 34
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=91.57 E-value=0.59 Score=39.19 Aligned_cols=63 Identities=11% Similarity=0.055 Sum_probs=49.3
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee--CCEEEEEEEEEecccchhhhhhhhhhh
Q 025727 171 LVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAV--AGRLLKTAFIEVRFLFFSLFFSTYHHQ 233 (249)
Q Consensus 171 ~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~--~~~vl~ti~vev~~~~~~~l~~~~~~~ 233 (249)
-.|.|..++++|.|.+|..+|...|++|.+.++... .+....+|.|..++..+.++...+..+
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL~KL 94 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKL 94 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTS
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHhcCc
Confidence 467888899999999999999999999999888643 355666888877666677766665543
No 35
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=88.34 E-value=0.98 Score=38.64 Aligned_cols=59 Identities=10% Similarity=0.103 Sum_probs=41.1
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeC-----CEEEEEEEEEecccchhhhhhhh
Q 025727 170 ILVVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVA-----GRLLKTAFIEVRFLFFSLFFSTY 230 (249)
Q Consensus 170 ~~~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~-----~~vl~ti~vev~~~~~~~l~~~~ 230 (249)
.+-|.|.+.+++|+|.+|+.+|-+.+.+|.+.+..... +.. ++++++++..+..+.+.+
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A--~I~IEV~d~~Le~LL~kL 67 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKA--LIYFEIEGGDFEKILERV 67 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEE--EEEEEECSSCHHHHHHHH
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEE--EEEEEECCCCHHHHHHHH
Confidence 46688999999999999999999999999999998864 333 333888775444444443
No 36
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=81.04 E-value=5 Score=30.83 Aligned_cols=45 Identities=13% Similarity=0.029 Sum_probs=31.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEE
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFI 216 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~v 216 (249)
+|-+..+++||.+.+++++|.+.|+.|....++..+++....|.+
T Consensus 74 vv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~ 118 (144)
T 2f06_A 74 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP 118 (144)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe
Confidence 355556789999999999999999999765444245554444433
No 37
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=64.62 E-value=20 Score=24.04 Aligned_cols=44 Identities=16% Similarity=0.322 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025727 60 ERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELES 116 (249)
Q Consensus 60 ER~RR~~in~~~~~LrslvP~~~k~dKasIl~~ai~yI~~Lq~~~~~L~~~~~~l~s 116 (249)
||++|....++..+-++= ..--+|+..|+.++..|+.+...|..
T Consensus 1 Ekr~rrrerNR~AA~rcR-------------~rKk~~~~~Le~~v~~L~~~n~~L~~ 44 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCR-------------NRRRELTDTLQAETDQLEDEKSALQT 44 (63)
T ss_dssp CHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677777777662 33456677777777777666665543
No 38
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=63.00 E-value=22 Score=27.06 Aligned_cols=35 Identities=9% Similarity=0.199 Sum_probs=29.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCeEEEEEEEee
Q 025727 172 VVSVTCSKRTDTMVKLCEAFESLKLKIITANITAV 206 (249)
Q Consensus 172 ~I~I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~ 206 (249)
.|.|..++++|.+.+|..+|.+.|+.|....+...
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~ 42 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAEN 42 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEec
Confidence 46667788999999999999999999887766543
No 39
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=59.36 E-value=45 Score=29.80 Aligned_cols=43 Identities=12% Similarity=0.178 Sum_probs=38.5
Q ss_pred CCCChHHHHHHHHHhCCCeEEEEEEEeeCCEEE-EEEEEEeccc
Q 025727 179 KRTDTMVKLCEAFESLKLKIITANITAVAGRLL-KTAFIEVRFL 221 (249)
Q Consensus 179 ~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl-~ti~vev~~~ 221 (249)
+++|.|.++|..|...|++...-.+-+..+..+ |.|.+++++.
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~ 260 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAA 260 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSC
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCC
Confidence 579999999999999999999999998888875 5899998775
No 40
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=57.69 E-value=16 Score=32.07 Aligned_cols=45 Identities=2% Similarity=-0.007 Sum_probs=38.9
Q ss_pred cCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEE-EEEEEEEeccc
Q 025727 177 CSKRTDTMVKLCEAFESLKLKIITANITAVAGRL-LKTAFIEVRFL 221 (249)
Q Consensus 177 C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~v-l~ti~vev~~~ 221 (249)
.++++|.|.++|..|...|++...-.+-+..+.. -|.|.+++++.
T Consensus 207 ~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~ 252 (283)
T 2qmx_A 207 LPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGH 252 (283)
T ss_dssp EECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESC
T ss_pred cCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecC
Confidence 3578999999999999999999999998887765 46899998864
No 41
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=56.84 E-value=17 Score=22.19 Aligned_cols=30 Identities=17% Similarity=0.299 Sum_probs=25.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025727 85 DKASIIKDAIDYIQELHEQEKRIRDEIMEL 114 (249)
Q Consensus 85 dKasIl~~ai~yI~~Lq~~~~~L~~~~~~l 114 (249)
.-+.-|.++=+-|..|+.+++.|++++..|
T Consensus 5 ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 5 EERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345668999999999999999999998765
No 42
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=53.04 E-value=15 Score=22.97 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 025727 95 DYIQELHEQEKRIRDEIMELESGK 118 (249)
Q Consensus 95 ~yI~~Lq~~~~~L~~~~~~l~s~~ 118 (249)
.|+-.|+.++++|+....+|+...
T Consensus 3 aYl~eLE~r~k~le~~naeLEerv 26 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERL 26 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888888888888888887653
No 43
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=52.90 E-value=14 Score=24.58 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 025727 94 IDYIQELHEQEKRIRDEIMELESGK 118 (249)
Q Consensus 94 i~yI~~Lq~~~~~L~~~~~~l~s~~ 118 (249)
-.||..|+.++..|+..+..|++..
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999998887653
No 44
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=51.76 E-value=21 Score=25.56 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025727 90 IKDAIDYIQELHEQEKRIRDEIMELES 116 (249)
Q Consensus 90 l~~ai~yI~~Lq~~~~~L~~~~~~l~s 116 (249)
++.||+-|.-||-++++|+.+...|..
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999988876543
No 45
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=50.10 E-value=28 Score=30.92 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=41.2
Q ss_pred EEEEEEcC-CCCChHHHHHHHHHhCCCeEEEEEEEeeCCEE-EEEEEEEeccc
Q 025727 171 LVVSVTCS-KRTDTMVKLCEAFESLKLKIITANITAVAGRL-LKTAFIEVRFL 221 (249)
Q Consensus 171 ~~I~I~C~-~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~v-l~ti~vev~~~ 221 (249)
.-|-+..+ +++|.|.++|..|...|++...-.+-+..+.. -|.|.+.+++.
T Consensus 202 TSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~ 254 (313)
T 3mwb_A 202 TTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGH 254 (313)
T ss_dssp EEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESC
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCC
Confidence 34445564 78999999999999999999999888877666 46888888764
No 46
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=49.97 E-value=8.7 Score=35.89 Aligned_cols=45 Identities=9% Similarity=0.079 Sum_probs=36.9
Q ss_pred EEcCCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEE-EEEEEEEec
Q 025727 175 VTCSKRTDTMVKLCEAFESLKLKIITANITAVAGRL-LKTAFIEVR 219 (249)
Q Consensus 175 I~C~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~v-l~ti~vev~ 219 (249)
+..++++|.|.++|..|...|+++++-.+-+..+.. -|.|.|.++
T Consensus 39 Fsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e 84 (429)
T 1phz_A 39 FSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD 84 (429)
T ss_dssp EEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC
T ss_pred EEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe
Confidence 334667999999999999999999988888776554 468888887
No 47
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=47.63 E-value=29 Score=27.32 Aligned_cols=35 Identities=11% Similarity=0.126 Sum_probs=28.4
Q ss_pred ceeEEEEEEcCC---CCChHHHHHHHHHhCCCeEEEEE
Q 025727 168 EKILVVSVTCSK---RTDTMVKLCEAFESLKLKIITAN 202 (249)
Q Consensus 168 ~~~~~I~I~C~~---~~g~L~~Il~aLesl~L~Vvsa~ 202 (249)
++-..|.|.... .+|.+.+++++|.+.|+.|...+
T Consensus 101 ~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 101 DTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp SSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence 345677887764 78999999999999999997743
No 48
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=46.66 E-value=15 Score=20.43 Aligned_cols=19 Identities=37% Similarity=0.698 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025727 97 IQELHEQEKRIRDEIMELE 115 (249)
Q Consensus 97 I~~Lq~~~~~L~~~~~~l~ 115 (249)
|+.|+++..+|++++..|+
T Consensus 2 irrlkqknarlkqeiaale 20 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALE 20 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHH
Confidence 5678888888888877765
No 49
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=45.12 E-value=43 Score=20.60 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025727 90 IKDAIDYIQELHEQEKRIRDEIMEL 114 (249)
Q Consensus 90 l~~ai~yI~~Lq~~~~~L~~~~~~l 114 (249)
+.+--+||++|+++..+|+.-++-|
T Consensus 5 vkelknyiqeleernaelknlkehl 29 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHL 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHH
Confidence 4566789999999988887765544
No 50
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=40.50 E-value=31 Score=22.61 Aligned_cols=22 Identities=14% Similarity=0.336 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 025727 95 DYIQELHEQEKRIRDEIMELES 116 (249)
Q Consensus 95 ~yI~~Lq~~~~~L~~~~~~l~s 116 (249)
.|+..|+.++..|+.+...|..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~ 43 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIE 43 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888888877776654
No 51
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=40.03 E-value=14 Score=24.85 Aligned_cols=21 Identities=10% Similarity=0.186 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025727 95 DYIQELHEQEKRIRDEIMELE 115 (249)
Q Consensus 95 ~yI~~Lq~~~~~L~~~~~~l~ 115 (249)
.||..|++++..|+..+..|.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 889999999999988776553
No 52
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.83 E-value=42 Score=24.40 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=29.2
Q ss_pred ceeEEEEEEcC---C---CCChHHHHHHHHHhCCCeEEEEEEEeeC
Q 025727 168 EKILVVSVTCS---K---RTDTMVKLCEAFESLKLKIITANITAVA 207 (249)
Q Consensus 168 ~~~~~I~I~C~---~---~~g~L~~Il~aLesl~L~Vvsa~is~~~ 207 (249)
+.+++|.++-. + ...++..|++.|..+| +|+.+.+....
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vi~vr~~~d~ 51 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFG-EVILIRFVEDK 51 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC-CEEEEEECSSS
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCC-CeEEEEEecCC
Confidence 45778888542 1 2458999999999999 99999886533
No 53
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=38.65 E-value=67 Score=23.58 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=26.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025727 85 DKASIIKDAIDYIQELHEQEKRIRDEIMELESG 117 (249)
Q Consensus 85 dKasIl~~ai~yI~~Lq~~~~~L~~~~~~l~s~ 117 (249)
+-..-|.++..-|..|+..+..++.-+.+++..
T Consensus 59 s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 59 SLEPQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334558999999999999999999988888654
No 54
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=37.08 E-value=43 Score=28.99 Aligned_cols=42 Identities=7% Similarity=0.236 Sum_probs=36.8
Q ss_pred CCCCChHHHHHHHHHhCCCeEEEEEEEeeCCEE-EEEEEEEec
Q 025727 178 SKRTDTMVKLCEAFESLKLKIITANITAVAGRL-LKTAFIEVR 219 (249)
Q Consensus 178 ~~~~g~L~~Il~aLesl~L~Vvsa~is~~~~~v-l~ti~vev~ 219 (249)
++++|.|.++|..|...|++...-.+-+..+.. -|.|.++++
T Consensus 197 ~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e 239 (267)
T 2qmw_A 197 HDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD 239 (267)
T ss_dssp SCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES
T ss_pred CCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe
Confidence 678999999999999999999999988887765 468888887
No 55
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=36.97 E-value=1.2e+02 Score=24.03 Aligned_cols=51 Identities=16% Similarity=0.049 Sum_probs=33.3
Q ss_pred ceeEEEEEE-cCCCCChHHHHHHHHHhCCCeEEEEEEEee---CCEEEEEEEEEe
Q 025727 168 EKILVVSVT-CSKRTDTMVKLCEAFESLKLKIITANITAV---AGRLLKTAFIEV 218 (249)
Q Consensus 168 ~~~~~I~I~-C~~~~g~L~~Il~aLesl~L~Vvsa~is~~---~~~vl~ti~vev 218 (249)
.+...|+|. -++++|.+.+|+++|.+.|+.|.-...++. ++..-.+|.+..
T Consensus 13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~ 67 (178)
T 2dtj_A 13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR 67 (178)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH
T ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc
Confidence 445677773 467899999999999999965554443333 233334566554
No 56
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=33.49 E-value=1.2e+02 Score=21.91 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=30.5
Q ss_pred CChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccc
Q 025727 181 TDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRFL 221 (249)
Q Consensus 181 ~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~~ 221 (249)
.-+++++.+.+ ...++|+.++|...+|..+=++.+++.++
T Consensus 35 ~PiIs~l~~~~-~v~vnIL~g~I~~i~~~~~G~L~v~l~G~ 74 (106)
T 3dhx_A 35 APLLSETARRF-NVNNNIISAQMDYAGGVKFGIMLTEMHGT 74 (106)
T ss_dssp CCHHHHHHHHS-CCEEEEEEEEEEEETTEEEEEEEEEEESC
T ss_pred hhHHHHHHHHH-CCCEEEEEEEeEEECCeeEEEEEEEEeCC
Confidence 33555554443 24479999999999999999999999875
No 57
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=33.28 E-value=63 Score=25.27 Aligned_cols=50 Identities=6% Similarity=0.007 Sum_probs=32.8
Q ss_pred ceeEEEEEEc-CCCCChHHHHHHHHHhCCCeEEEEEEEee-CCEEEEEEEEE
Q 025727 168 EKILVVSVTC-SKRTDTMVKLCEAFESLKLKIITANITAV-AGRLLKTAFIE 217 (249)
Q Consensus 168 ~~~~~I~I~C-~~~~g~L~~Il~aLesl~L~Vvsa~is~~-~~~vl~ti~ve 217 (249)
.+...|.|.. +.++|.+.+|+++|.+.|+.|.....+.. +|..-.+|.+.
T Consensus 23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~ 74 (167)
T 2re1_A 23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVP 74 (167)
T ss_dssp CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEEC
T ss_pred CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEe
Confidence 4456777773 67899999999999999987765543211 34333455544
No 58
>2lqj_A Mg2+ transport protein; ACT domain, membrane protein, regulation, HYDR; NMR {Mycobacterium tuberculosis}
Probab=32.80 E-value=1.1e+02 Score=22.09 Aligned_cols=54 Identities=11% Similarity=0.054 Sum_probs=38.8
Q ss_pred ceeEEEEEEcCCC--CChHHHHHHHHHhCCCeEEEEEEEee-CC-E-EEEEEEEEeccc
Q 025727 168 EKILVVSVTCSKR--TDTMVKLCEAFESLKLKIITANITAV-AG-R-LLKTAFIEVRFL 221 (249)
Q Consensus 168 ~~~~~I~I~C~~~--~g~L~~Il~aLesl~L~Vvsa~is~~-~~-~-vl~ti~vev~~~ 221 (249)
+....|.|.|... ......++++|+..++.+.+..+..+ ++ . +..++.+...+.
T Consensus 6 e~~Y~v~Vic~~~~e~~vR~lL~~~L~~~~~~l~~l~s~~~~~~~veI~A~L~at~~~~ 64 (94)
T 2lqj_A 6 LQPYQVRVICRPKAETYVRAHIVQRTSSNDITLRGIRTGPAGDDNITLTAHLLMVGHTP 64 (94)
T ss_dssp EEEEEEEEEECHHHHHHHHHHHHHHHHHHTEEEEEEEEEECSSSCEEEEEEEEEESCCH
T ss_pred ceEEEEEEEECcHHHHHHHHHHHHHHhcCCCceeEeeeecCCCCeEEEEEEEEecCCCH
Confidence 4467899999963 56788899999999999999886653 33 2 344666655444
No 59
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=32.22 E-value=52 Score=19.82 Aligned_cols=20 Identities=10% Similarity=0.461 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 025727 97 IQELHEQEKRIRDEIMELES 116 (249)
Q Consensus 97 I~~Lq~~~~~L~~~~~~l~s 116 (249)
+++|+.++++|..++..|+.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~ 22 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKN 22 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHH
Confidence 56677777777766666543
No 60
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=31.99 E-value=1.1e+02 Score=21.87 Aligned_cols=45 Identities=24% Similarity=0.342 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025727 64 RKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQELHEQEKRIRDEIMELES 116 (249)
Q Consensus 64 R~~in~~~~~LrslvP~~~k~dKasIl~~ai~yI~~Lq~~~~~L~~~~~~l~s 116 (249)
|++.++.+..||.=+ ..=|..=++-|+.|+..++.++..+.+|..
T Consensus 35 rqkekEqL~~LKkkl--------~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 35 RARAKEQLAALKKHK--------ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 778888888888653 222556667777788888888777777653
No 61
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.15 E-value=51 Score=22.13 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025727 95 DYIQELHEQEKRIRDEIMELE 115 (249)
Q Consensus 95 ~yI~~Lq~~~~~L~~~~~~l~ 115 (249)
.|+..|+.++..|+.+...|.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~ 50 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLE 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555556666665555555544
No 62
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=30.27 E-value=1e+02 Score=23.93 Aligned_cols=51 Identities=6% Similarity=-0.021 Sum_probs=33.2
Q ss_pred ceeEEEEEEc-CCCCChHHHHHHHHHhCCCeEEEEEEEee---CCEEEEEEEEEe
Q 025727 168 EKILVVSVTC-SKRTDTMVKLCEAFESLKLKIITANITAV---AGRLLKTAFIEV 218 (249)
Q Consensus 168 ~~~~~I~I~C-~~~~g~L~~Il~aLesl~L~Vvsa~is~~---~~~vl~ti~vev 218 (249)
.+...|.|.. ++++|.+.+|+.+|.+.|+.|.-...+.. .|..-.+|.+.-
T Consensus 14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~ 68 (167)
T 2dt9_A 14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKK 68 (167)
T ss_dssp CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEG
T ss_pred CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEeh
Confidence 3456666654 56789999999999999877765443322 334444566543
No 63
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.39 E-value=36 Score=25.03 Aligned_cols=47 Identities=15% Similarity=0.197 Sum_probs=33.2
Q ss_pred ceeEEEEEEcCC-------CCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccc
Q 025727 168 EKILVVSVTCSK-------RTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRFL 221 (249)
Q Consensus 168 ~~~~~I~I~C~~-------~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~~ 221 (249)
+.+++|.+..+. ...++..|++.|..+| +|+.+++.... .+|+..++
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G-~Vilvr~v~d~------~fVtF~d~ 68 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYG-TIVLVRINQGQ------MLVTFADS 68 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHS-CCSEEEEETTE------EEEECSCS
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCC-CEEEEEEecCc------EEEEEcCh
Confidence 457788886532 3458889999999999 88888774433 55555554
No 64
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=28.10 E-value=70 Score=18.89 Aligned_cols=20 Identities=10% Similarity=0.253 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 025727 97 IQELHEQEKRIRDEIMELES 116 (249)
Q Consensus 97 I~~Lq~~~~~L~~~~~~l~s 116 (249)
+.+|+.++++|-.++..|+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~ 21 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXEN 21 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHH
Confidence 45677777777766666653
No 65
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=27.81 E-value=71 Score=18.86 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025727 97 IQELHEQEKRIRDEIMELE 115 (249)
Q Consensus 97 I~~Lq~~~~~L~~~~~~l~ 115 (249)
+++|+.++++|-.++..|+
T Consensus 2 MnQLEdKVEell~~~~~le 20 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNT 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHH
Confidence 4566777777666665554
No 66
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=27.50 E-value=58 Score=17.89 Aligned_cols=19 Identities=21% Similarity=0.560 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025727 96 YIQELHEQEKRIRDEIMEL 114 (249)
Q Consensus 96 yI~~Lq~~~~~L~~~~~~l 114 (249)
|+-+|+.++.+|+-+...|
T Consensus 1 yvyqlkdevgelkgevral 19 (27)
T 3v86_A 1 YVYQLKDEVGELKGEVRAL 19 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhHHHHH
Confidence 4556666666666665554
No 67
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=27.16 E-value=66 Score=21.25 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 025727 94 IDYIQELHEQEKRIRDEIMELES 116 (249)
Q Consensus 94 i~yI~~Lq~~~~~L~~~~~~l~s 116 (249)
-+|+..|+.++..|+.+...|..
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~ 43 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELAS 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666655543
No 68
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=26.42 E-value=97 Score=17.82 Aligned_cols=19 Identities=16% Similarity=0.462 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025727 97 IQELHEQEKRIRDEIMELE 115 (249)
Q Consensus 97 I~~Lq~~~~~L~~~~~~l~ 115 (249)
++.|+.-+++|++++..|+
T Consensus 8 ~r~l~~ivq~lq~r~drle 26 (32)
T 2akf_A 8 VRNLNAIVQKLQERLDRLE 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554
No 69
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=26.38 E-value=22 Score=24.25 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025727 94 IDYIQELHEQEKRIRDEIMEL 114 (249)
Q Consensus 94 i~yI~~Lq~~~~~L~~~~~~l 114 (249)
-.||..|+.++..|+..+..|
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 367888888888777665544
No 70
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=26.15 E-value=79 Score=18.79 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 025727 97 IQELHEQEKRIRDEIMELES 116 (249)
Q Consensus 97 I~~Lq~~~~~L~~~~~~l~s 116 (249)
+.+|+.++++|-.++.+|+.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~ 22 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEX 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHH
Confidence 45677777777776666653
No 71
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=25.61 E-value=72 Score=22.01 Aligned_cols=11 Identities=9% Similarity=0.537 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 025727 99 ELHEQEKRIRD 109 (249)
Q Consensus 99 ~Lq~~~~~L~~ 109 (249)
.|..++..|..
T Consensus 54 ~Lr~~i~~L~~ 64 (70)
T 1gd2_E 54 QLRQKVRQLEE 64 (70)
T ss_dssp HHTTHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 72
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=25.45 E-value=75 Score=20.87 Aligned_cols=21 Identities=14% Similarity=0.265 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025727 95 DYIQELHEQEKRIRDEIMELE 115 (249)
Q Consensus 95 ~yI~~Lq~~~~~L~~~~~~l~ 115 (249)
.|+..|+.++..|+.+...|.
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~ 42 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQ 42 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544
No 73
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=24.94 E-value=71 Score=20.89 Aligned_cols=28 Identities=7% Similarity=0.204 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025727 89 IIKDAIDYIQELHEQEKRIRDEIMELES 116 (249)
Q Consensus 89 Il~~ai~yI~~Lq~~~~~L~~~~~~l~s 116 (249)
.|+..++-+..|..++..|+.++..++.
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788888888888888888888776653
No 74
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=24.36 E-value=89 Score=18.53 Aligned_cols=20 Identities=10% Similarity=0.292 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 025727 97 IQELHEQEKRIRDEIMELES 116 (249)
Q Consensus 97 I~~Lq~~~~~L~~~~~~l~s 116 (249)
+.+|+.++++|-.++..|+.
T Consensus 3 MnQLEdKVEeLl~~~~~Le~ 22 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXEN 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHH
Confidence 45677777777666666553
No 75
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=23.78 E-value=1.9e+02 Score=21.70 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=20.9
Q ss_pred ccCCCCCCCCcchH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 025727 76 SVVPNISKMDKASI------IKDAIDYIQELHEQEKRIRDEIME 113 (249)
Q Consensus 76 slvP~~~k~dKasI------l~~ai~yI~~Lq~~~~~L~~~~~~ 113 (249)
.|||.+.++++..| |..|=+-+..-+..+.+|+++...
T Consensus 13 ~~~~~~~~~~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q 56 (110)
T 2v4h_A 13 GLVPRGSHMASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ 56 (110)
T ss_dssp CCCCTTCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777655 444444444445555555554443
No 76
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=23.76 E-value=1e+02 Score=17.17 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=14.8
Q ss_pred CCcchHHHHHHHHHHHHHH
Q 025727 84 MDKASIIKDAIDYIQELHE 102 (249)
Q Consensus 84 ~dKasIl~~ai~yI~~Lq~ 102 (249)
+....+|-+|.+|+.....
T Consensus 2 ~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4567789999999986654
No 77
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=23.75 E-value=2e+02 Score=21.39 Aligned_cols=51 Identities=8% Similarity=0.021 Sum_probs=40.5
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhC---CCeEEEEEEEeeCCEEEEEEEEEeccc
Q 025727 170 ILVVSVTCSKRTDTMVKLCEAFESL---KLKIITANITAVAGRLLKTAFIEVRFL 221 (249)
Q Consensus 170 ~~~I~I~C~~~~g~L~~Il~aLesl---~L~Vvsa~is~~~~~vl~ti~vev~~~ 221 (249)
++.++|-....+++...|.++++.. +.++ +.+-|..|..+-.++.+.|...
T Consensus 36 ~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v~S~ 89 (109)
T 1rwu_A 36 PFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINATHI 89 (109)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECCSSH
T ss_pred CceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEECCH
Confidence 4667777777889999999999987 6776 6688888888888888888764
No 78
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=23.29 E-value=59 Score=19.26 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 025727 98 QELHEQEKRIRDEIMELES 116 (249)
Q Consensus 98 ~~Lq~~~~~L~~~~~~l~s 116 (249)
.+|+.++++|-.++.+|+.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~ 21 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLEN 21 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHH
Confidence 4566666666666655543
No 79
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=23.06 E-value=2.7e+02 Score=24.55 Aligned_cols=63 Identities=6% Similarity=-0.126 Sum_probs=44.4
Q ss_pred eEEEEEEcCC-CCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEecccchhhhhhhhhh
Q 025727 170 ILVVSVTCSK-RTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRFLFFSLFFSTYHH 232 (249)
Q Consensus 170 ~~~I~I~C~~-~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~~~~~~l~~~~~~ 232 (249)
..++.+.... +++++.+|...|.++|+++......+....+..-|++.+.......++..+..
T Consensus 101 ~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~~~~~~~~l~~~l~~ 164 (415)
T 3p96_A 101 THTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSVPPGADEALRTALNR 164 (415)
T ss_dssp SEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEECCTTCHHHHHHHHHH
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeCCCCCHHHHHHHHHH
Confidence 4556666676 78999999999999999998887766444444456776665444555555443
No 80
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=22.88 E-value=1.5e+02 Score=22.89 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=27.4
Q ss_pred ceeEEEEEEcCC---CCChHHHHHHHHHhCCCeEEEEE
Q 025727 168 EKILVVSVTCSK---RTDTMVKLCEAFESLKLKIITAN 202 (249)
Q Consensus 168 ~~~~~I~I~C~~---~~g~L~~Il~aLesl~L~Vvsa~ 202 (249)
++-..|.|.... .+|.+.+++++|.+.|+.|.-.+
T Consensus 93 ~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is 130 (167)
T 2dt9_A 93 PDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA 130 (167)
T ss_dssp CSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 445667777664 79999999999999999984443
No 81
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=22.59 E-value=1.3e+02 Score=21.58 Aligned_cols=20 Identities=40% Similarity=0.433 Sum_probs=9.7
Q ss_pred chhHHHHHHHHHHHHHHHhcc
Q 025727 57 IVSERNRRKKLNERLFALRSV 77 (249)
Q Consensus 57 ~~~ER~RR~~in~~~~~Lrsl 77 (249)
.++|+ ||..+.+.|.+=..|
T Consensus 32 ~lAE~-RR~AL~eaL~EN~~L 51 (83)
T 1uii_A 32 EVAEK-RRKALYEALKENEKL 51 (83)
T ss_dssp HHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHH
Confidence 34554 444555555544443
No 82
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=22.30 E-value=68 Score=19.32 Aligned_cols=19 Identities=26% Similarity=0.539 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025727 97 IQELHEQEKRIRDEIMELE 115 (249)
Q Consensus 97 I~~Lq~~~~~L~~~~~~l~ 115 (249)
+++|..++++|..++..|+
T Consensus 3 MnQLE~kVEeLl~~~~~Le 21 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLE 21 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHH
Confidence 3456666666665555544
No 83
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=22.29 E-value=1.1e+02 Score=16.69 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 025727 88 SIIKDAIDYIQELHEQEK 105 (249)
Q Consensus 88 sIl~~ai~yI~~Lq~~~~ 105 (249)
+-|-+|-.|+.+|+.+++
T Consensus 4 sgliearkyleqlhrklk 21 (26)
T 1xkm_B 4 SGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 457788889988887654
No 84
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=22.21 E-value=1.2e+02 Score=23.90 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=27.4
Q ss_pred ceeEEEEEEcC---CCCChHHHHHHHHHhCCCeEEEEE
Q 025727 168 EKILVVSVTCS---KRTDTMVKLCEAFESLKLKIITAN 202 (249)
Q Consensus 168 ~~~~~I~I~C~---~~~g~L~~Il~aLesl~L~Vvsa~ 202 (249)
++-..|.|... ..+|.+.+++++|.+.|+.|.-.+
T Consensus 93 ~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is 130 (178)
T 2dtj_A 93 DQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS 130 (178)
T ss_dssp SCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred CCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE
Confidence 44566777665 467999999999999999887643
No 85
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=21.78 E-value=1.2e+02 Score=21.15 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 025727 94 IDYIQELHEQEKRIRDEIMELES 116 (249)
Q Consensus 94 i~yI~~Lq~~~~~L~~~~~~l~s 116 (249)
-.|+..|++++..|+..+.++..
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 35999999999999988876643
No 86
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=20.95 E-value=1.2e+02 Score=24.89 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025727 88 SIIKDAIDYIQELHEQEKRIRDEIMELES 116 (249)
Q Consensus 88 sIl~~ai~yI~~Lq~~~~~L~~~~~~l~s 116 (249)
.|++-+++-+..|+.++..|+++.+.|..
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~ 173 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLR 173 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888888899999999999999888753
No 87
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=20.31 E-value=2.3e+02 Score=19.96 Aligned_cols=49 Identities=10% Similarity=0.216 Sum_probs=34.9
Q ss_pred EEEEEcCC---CCChHHHHHHHHHhCCCeEEEEEEEeeCCEEEEEEEEEeccc
Q 025727 172 VVSVTCSK---RTDTMVKLCEAFESLKLKIITANITAVAGRLLKTAFIEVRFL 221 (249)
Q Consensus 172 ~I~I~C~~---~~g~L~~Il~aLesl~L~Vvsa~is~~~~~vl~ti~vev~~~ 221 (249)
+|++.-.. ..-+++++...+ .....|+.+++...++..+-.+.+++.++
T Consensus 25 lv~l~f~g~~~~~pvis~l~~~~-~v~vnIl~g~i~~i~~~~~G~L~v~l~G~ 76 (101)
T 2qrr_A 25 LVRMEFTGATVDAPLMSQISRKY-NIDVSILSSDLDYAGGVKFGMMVAELFGN 76 (101)
T ss_dssp EEEEEECTTSCSSCHHHHHHHHS-CCEEEEEEEEEEEETTEEEEEEEEEEESC
T ss_pred EEEEEEcCCCcCchHHHHHHHHh-CCCEEEEEeeeeEcCCeeEEEEEEEEeCC
Confidence 45555443 234555555443 35578999999999999999999998764
Done!