Query 025729
Match_columns 249
No_of_seqs 122 out of 1135
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:54:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025729.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025729hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03750 proteasome_alpha_type_ 100.0 3.1E-61 6.6E-66 410.2 29.3 223 4-228 1-226 (227)
2 KOG0183 20S proteasome, regula 100.0 3.5E-62 7.6E-67 394.4 21.9 242 1-243 1-245 (249)
3 KOG0176 20S proteasome, regula 100.0 8.5E-62 1.9E-66 387.8 20.8 228 1-230 5-240 (241)
4 PTZ00246 proteasome subunit al 100.0 1.8E-60 3.9E-65 411.5 30.8 233 2-235 3-245 (253)
5 PRK03996 proteasome subunit al 100.0 3.3E-59 7.1E-64 401.1 29.6 228 2-231 8-239 (241)
6 TIGR03633 arc_protsome_A prote 100.0 1.2E-58 2.7E-63 393.4 27.3 220 2-223 1-224 (224)
7 cd03751 proteasome_alpha_type_ 100.0 1.5E-58 3.2E-63 389.6 26.2 207 2-210 2-212 (212)
8 cd03755 proteasome_alpha_type_ 100.0 1.8E-58 3.8E-63 388.1 26.2 206 4-210 1-207 (207)
9 cd03752 proteasome_alpha_type_ 100.0 1.2E-57 2.7E-62 384.5 26.7 208 2-210 1-213 (213)
10 cd03754 proteasome_alpha_type_ 100.0 7.5E-57 1.6E-61 380.1 26.1 207 3-210 1-215 (215)
11 cd03749 proteasome_alpha_type_ 100.0 1.9E-56 4.2E-61 376.7 26.4 204 4-211 1-211 (211)
12 cd03756 proteasome_alpha_arche 100.0 2.7E-56 5.9E-61 375.9 26.9 207 3-211 1-210 (211)
13 COG0638 PRE1 20S proteasome, a 100.0 8.3E-56 1.8E-60 378.0 28.4 228 2-233 1-234 (236)
14 KOG0178 20S proteasome, regula 100.0 3E-56 6.5E-61 359.2 22.3 235 2-237 3-246 (249)
15 KOG0181 20S proteasome, regula 100.0 1.9E-56 4.1E-61 356.4 18.3 226 3-231 5-233 (233)
16 KOG0182 20S proteasome, regula 100.0 1.3E-55 2.8E-60 355.7 23.3 232 1-233 6-244 (246)
17 cd01911 proteasome_alpha prote 100.0 3.5E-55 7.6E-60 368.6 25.6 206 4-210 1-209 (209)
18 cd03753 proteasome_alpha_type_ 100.0 6.2E-55 1.3E-59 368.1 26.0 205 4-210 1-213 (213)
19 KOG0184 20S proteasome, regula 100.0 1.1E-55 2.5E-60 358.3 20.3 226 3-231 7-238 (254)
20 KOG0863 20S proteasome, regula 100.0 3.3E-50 7.2E-55 328.1 20.9 227 3-233 5-238 (264)
21 TIGR03691 20S_bact_alpha prote 100.0 2.9E-46 6.2E-51 317.4 25.5 201 20-228 17-228 (228)
22 TIGR03690 20S_bact_beta protea 100.0 2.2E-45 4.9E-50 311.0 24.6 204 29-234 1-217 (219)
23 PTZ00488 Proteasome subunit be 100.0 1.3E-44 2.8E-49 310.7 24.6 201 26-235 35-242 (247)
24 cd03758 proteasome_beta_type_2 100.0 3.1E-44 6.7E-49 298.5 23.5 185 31-219 2-191 (193)
25 cd03760 proteasome_beta_type_4 100.0 3.3E-44 7.2E-49 299.3 22.9 186 29-218 1-194 (197)
26 cd03759 proteasome_beta_type_3 100.0 1.4E-43 3.1E-48 295.0 23.2 181 29-214 2-188 (195)
27 cd03761 proteasome_beta_type_5 100.0 3.4E-43 7.3E-48 291.2 23.4 182 31-219 1-187 (188)
28 TIGR03634 arc_protsome_B prote 100.0 1.9E-42 4E-47 285.9 23.3 179 30-214 1-184 (185)
29 cd03765 proteasome_beta_bacter 100.0 5.2E-42 1.1E-46 291.9 25.3 202 31-237 1-227 (236)
30 cd03757 proteasome_beta_type_1 100.0 2.8E-42 6.1E-47 290.7 22.9 185 27-217 5-203 (212)
31 cd03764 proteasome_beta_archea 100.0 8.6E-42 1.9E-46 282.7 23.8 183 31-220 1-188 (188)
32 cd03763 proteasome_beta_type_7 100.0 3E-41 6.4E-46 279.7 23.3 183 31-221 1-188 (189)
33 cd03762 proteasome_beta_type_6 100.0 4.5E-41 9.7E-46 278.4 23.3 180 31-217 1-185 (188)
34 PF00227 Proteasome: Proteasom 100.0 5.1E-41 1.1E-45 277.8 22.7 183 27-210 1-190 (190)
35 cd01912 proteasome_beta protea 100.0 1.7E-40 3.7E-45 274.9 23.4 182 31-218 1-187 (189)
36 cd01906 proteasome_protease_Hs 100.0 2.3E-39 4.9E-44 266.2 23.4 177 31-210 1-182 (182)
37 KOG0177 20S proteasome, regula 100.0 7.1E-36 1.5E-40 237.7 17.3 187 30-220 1-192 (200)
38 KOG0175 20S proteasome, regula 100.0 7.5E-33 1.6E-37 229.6 16.0 203 27-236 68-275 (285)
39 KOG0173 20S proteasome, regula 100.0 1.1E-32 2.5E-37 228.1 16.4 183 25-214 32-219 (271)
40 KOG0179 20S proteasome, regula 100.0 8.3E-32 1.8E-36 217.4 18.7 182 28-214 27-224 (235)
41 KOG0174 20S proteasome, regula 100.0 9.9E-32 2.1E-36 214.7 14.6 196 26-227 15-216 (224)
42 KOG0185 20S proteasome, regula 100.0 2.2E-31 4.9E-36 218.3 14.2 211 8-224 13-240 (256)
43 PRK05456 ATP-dependent proteas 100.0 2.3E-29 5E-34 204.7 19.5 163 30-209 1-171 (172)
44 cd01901 Ntn_hydrolase The Ntn 100.0 1.1E-28 2.4E-33 197.0 21.4 160 31-195 1-163 (164)
45 cd01913 protease_HslV Protease 100.0 3.8E-28 8.3E-33 196.3 18.9 161 31-209 1-170 (171)
46 TIGR03692 ATP_dep_HslV ATP-dep 100.0 1.2E-27 2.7E-32 193.4 18.9 162 31-209 1-170 (171)
47 KOG0180 20S proteasome, regula 100.0 1.2E-27 2.6E-32 188.0 17.2 182 28-214 6-193 (204)
48 PF10584 Proteasome_A_N: Prote 99.6 2.3E-15 5E-20 80.1 2.5 23 4-26 1-23 (23)
49 COG5405 HslV ATP-dependent pro 99.5 5E-13 1.1E-17 104.8 11.9 166 29-211 3-176 (178)
50 COG3484 Predicted proteasome-t 99.3 1.3E-10 2.8E-15 94.5 13.7 205 30-240 1-231 (255)
51 PF09894 DUF2121: Uncharacteri 94.2 1.1 2.5E-05 36.8 11.3 46 168-213 131-180 (194)
52 COG4079 Uncharacterized protei 79.1 41 0.00089 29.0 14.9 58 168-225 132-194 (293)
53 KOG3361 Iron binding protein i 71.3 7.5 0.00016 30.2 4.1 43 147-189 71-114 (157)
54 smart00481 POLIIIAc DNA polyme 50.6 21 0.00045 23.6 3.0 32 9-40 6-38 (67)
55 PF11211 DUF2997: Protein of u 49.0 28 0.00062 22.0 3.2 33 146-178 2-34 (48)
56 PRK00912 ribonuclease P protei 45.5 26 0.00056 29.7 3.5 39 1-40 1-39 (237)
57 PF07499 RuvA_C: RuvA, C-termi 45.1 13 0.00028 23.2 1.2 32 162-193 12-45 (47)
58 PF05681 Fumerase: Fumarate hy 37.1 2.5E+02 0.0054 24.6 8.3 97 99-198 70-170 (271)
59 PF12566 DUF3748: Protein of u 35.9 22 0.00047 27.0 1.4 25 7-47 71-95 (122)
60 COG0279 GmhA Phosphoheptose is 33.3 50 0.0011 26.8 3.1 35 11-45 116-151 (176)
61 PRK07328 histidinol-phosphatas 30.5 61 0.0013 28.0 3.5 39 1-39 1-40 (269)
62 COG3193 GlcG Uncharacterized p 29.8 1.1E+02 0.0025 24.0 4.5 35 180-215 6-41 (141)
63 PF06057 VirJ: Bacterial virul 29.4 67 0.0014 26.7 3.3 33 102-138 44-76 (192)
64 cd04513 Glycosylasparaginase G 28.9 2.3E+02 0.005 24.7 6.7 57 160-216 187-248 (263)
65 cd06404 PB1_aPKC PB1 domain is 27.7 2E+02 0.0043 20.5 5.0 33 201-233 37-70 (83)
66 COG4245 TerY Uncharacterized p 27.4 2.5E+02 0.0054 23.4 6.2 51 143-217 4-57 (207)
67 PF13778 DUF4174: Domain of un 27.4 1.3E+02 0.0029 22.5 4.5 39 193-231 68-111 (118)
68 PF01242 PTPS: 6-pyruvoyl tetr 25.5 1.6E+02 0.0035 22.0 4.7 46 75-120 43-98 (123)
69 KOG0205 Plasma membrane H+-tra 25.5 3.2E+02 0.0069 27.5 7.5 96 43-158 329-425 (942)
70 PF03928 DUF336: Domain of unk 24.9 1.2E+02 0.0026 23.1 3.9 35 180-215 1-36 (132)
71 PF02811 PHP: PHP domain; Int 24.5 76 0.0016 24.6 2.9 31 9-39 7-38 (175)
72 PF09702 Cas_Csa5: CRISPR-asso 23.4 3.2E+02 0.0069 20.3 6.0 23 211-233 61-87 (105)
73 PRK09732 hypothetical protein; 23.3 1.9E+02 0.0042 22.4 4.8 35 180-215 5-40 (134)
74 PRK08230 tartrate dehydratase 21.7 5.8E+02 0.013 22.7 8.4 76 120-198 101-182 (299)
75 PF10632 He_PIG_assoc: He_PIG 21.2 1.2E+02 0.0027 17.0 2.3 21 132-154 6-26 (29)
76 TIGR03544 DivI1A_domain DivIVA 20.3 1.2E+02 0.0027 17.3 2.4 17 217-233 16-32 (34)
77 PF04312 DUF460: Protein of un 20.2 2.2E+02 0.0048 22.3 4.4 64 133-198 33-103 (138)
No 1
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.1e-61 Score=410.18 Aligned_cols=223 Identities=43% Similarity=0.696 Sum_probs=214.8
Q ss_pred CCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHHHH
Q 025729 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARV 83 (249)
Q Consensus 4 yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 83 (249)
||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+++++.+++.+||++|++|++|+++|..+|++.
T Consensus 1 yd~~~t~fsp~Grl~QveyA~~av~~G~t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (227)
T cd03750 1 YSFSLTTFSPSGKLVQIEYALAAVSSGAPSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFRV 80 (227)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHHH
Confidence 89999999999999999999999999999999999999999999999888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeee
Q 025729 84 LVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANAT 163 (249)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~ai 163 (249)
+++++|.++..|++++|++++++.++++|++.+|.|+++++.|||+|++||+|||+ .||+||.+||+|++.+++++|+
T Consensus 81 l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~--~g~~Ly~~d~~G~~~~~~~~a~ 158 (227)
T cd03750 81 LVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDE--GGPYLYQVDPSGSYFTWKATAI 158 (227)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeC--CCCEEEEECCCCCEEeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999994 5899999999999999999999
Q ss_pred cCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcCCCEEEccHHHHHHHH
Q 025729 164 GRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVES--GGKNIEVAVMTREHGLRQLEEAEIDAIV 228 (249)
Q Consensus 164 G~g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~~--~~~~iev~ii~~~g~~~~l~~~ei~~~~ 228 (249)
|+|+.+++++||++|+++|+ +||++++++||..+.++ ++++++|++++++++++.++++||++++
T Consensus 159 G~g~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~l~~~~iev~iv~~~~~~~~~~~~ei~~~~ 226 (227)
T cd03750 159 GKNYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEGQMTEKNIEIGICGETKGFRLLTPAEIKDYL 226 (227)
T ss_pred CCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCEEECCHHHHHHHh
Confidence 99999999999999999999 99999999999988864 6789999999997559999999999876
No 2
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-62 Score=394.42 Aligned_cols=242 Identities=74% Similarity=1.108 Sum_probs=231.3
Q ss_pred CCCCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHH
Q 025729 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKAD 80 (249)
Q Consensus 1 ~~~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 80 (249)
|++||+.+|+|||||+|||||||++|+.+|+|+||++++|+|||+.+++...+|++.+...||..+++|++|+++|+.+|
T Consensus 1 msrydraltvFSPDGhL~QVEYAqEAvrkGstaVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~aD 80 (249)
T KOG0183|consen 1 MSRYDRALTVFSPDGHLFQVEYAQEAVRKGSTAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTAD 80 (249)
T ss_pred CCccccceEEECCCCCEEeeHhHHHHHhcCceEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCcc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceeccee
Q 025729 81 ARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (249)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~ 160 (249)
++.+++++|.+|++|+++.+.+++++.++++|+.+.|.|||..+.||||++.||+|+|+ ++.|.||.+||+|.+.+|++
T Consensus 81 ArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~-~g~p~lyqtePsG~f~ewka 159 (249)
T KOG0183|consen 81 ARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDP-DGTPRLYQTEPSGIFSEWKA 159 (249)
T ss_pred ceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCC-CCCeeeEeeCCCcchhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999998 78999999999999999999
Q ss_pred eeecCCchHHHHHHHhhhccC--Cc-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcCCCEEEccHHHHHHHHHHHHHHHHH
Q 025729 161 NATGRNSNSIREFLEKNYKET--SG-QETVKLAIRALLEVVESGGKNIEVAVMTREHGLRQLEEAEIDAIVSEIEAEKAA 237 (249)
Q Consensus 161 ~aiG~g~~~~~~~Le~~~~~~--~s-~eai~la~~al~~~~~~~~~~iev~ii~~~g~~~~l~~~ei~~~~~~i~~~~~~ 237 (249)
.|+|.+++.+..+|||+|.+. .+ .++++|++++|.++...++.+||++++++.+.++.++.++|+.++..|+.+.++
T Consensus 160 ~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs~~~nie~aVm~~~~~~~~l~~~~I~~~v~~ie~E~e~ 239 (249)
T KOG0183|consen 160 NAIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQSGGKNIEVAVMKRRKDLKMLESEEIDDIVKEIEQEEEA 239 (249)
T ss_pred cccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhcCCCeeEEEEEecCCceeecCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876 56 999999999999999999999999999997669999999999999999999554
Q ss_pred HHHhhc
Q 025729 238 AEAAKK 243 (249)
Q Consensus 238 ~~~~~~ 243 (249)
++.+++
T Consensus 240 e~~~~~ 245 (249)
T KOG0183|consen 240 EAEKKK 245 (249)
T ss_pred HHHhhc
Confidence 444443
No 3
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-62 Score=387.80 Aligned_cols=228 Identities=40% Similarity=0.684 Sum_probs=217.4
Q ss_pred CCCCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHH
Q 025729 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKAD 80 (249)
Q Consensus 1 ~~~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 80 (249)
++.||+.+++|||||||||||||++|++.|+|.|||+.++||||+.++|++++|+.+++.+||++|++||+|++||+.+|
T Consensus 5 rseydrgVNTfSpEGRlfQVEYaieAikLGsTaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SGl~aD 84 (241)
T KOG0176|consen 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSGLIAD 84 (241)
T ss_pred HHHhcccccccCCCceeeehhhHHHHHhcCCceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeeccccccc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCC-----CCcceeeeEEEEeeCCCCcceEEEECCCCce
Q 025729 81 ARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGG-----VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTF 155 (249)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~-----~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~ 155 (249)
++++++++|.+|++|++.||++++++.+.+.++++..+|..... .|||||++|+||+| +.||+||..||+|++
T Consensus 85 arTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D--~~gpqL~h~dPSGtf 162 (241)
T KOG0176|consen 85 ARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHD--ETGPQLYHLDPSGTF 162 (241)
T ss_pred hHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeecc--CCCceEEEeCCCCce
Confidence 99999999999999999999999999999999999988875422 49999999999999 689999999999999
Q ss_pred ecceeeeecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcCCCEEEccHHHHHHHHHH
Q 025729 156 SAWKANATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVES--GGKNIEVAVMTREHGLRQLEEAEIDAIVSE 230 (249)
Q Consensus 156 ~~~~~~aiG~g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~~--~~~~iev~ii~~~g~~~~l~~~ei~~~~~~ 230 (249)
++|++-|||+|+.-+.+.|++.|+++|+ +||+.+++..|+.+++. +.+|++|.+|++++.|++++++|+++++.+
T Consensus 163 ~~~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeKl~~~Nvev~~vt~e~~f~~~t~EE~~~~i~~ 240 (241)
T KOG0176|consen 163 IRYKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVMEEKLNSNNVEVAVVTPEGEFHIYTPEEVEQVIKR 240 (241)
T ss_pred EEecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHhcCccceEEEEEcccCceEecCHHHHHHHHhc
Confidence 9999999999999999999999999999 99999999999999864 788999999999988999999999988754
No 4
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.8e-60 Score=411.53 Aligned_cols=233 Identities=39% Similarity=0.648 Sum_probs=220.5
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCccccccc-CcccceEEecCcEEEEEeccHHH
Q 025729 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDS-RMVRKIVSLDNHIALACAGLKAD 80 (249)
Q Consensus 2 ~~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~-~~~~Ki~~i~~~i~~~~sG~~~D 80 (249)
.+||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+++++.. ++.+|||+|++|++|+++|..+|
T Consensus 3 ~~yd~~~~~fsp~Grl~QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 82 (253)
T PTZ00246 3 RRYDSRTTTFSPEGRLYQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTAD 82 (253)
T ss_pred CccCCCCceECCCCEEhHHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHH
Confidence 46999999999999999999999999999999999999999999999998876654 46899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceeccee
Q 025729 81 ARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (249)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~ 160 (249)
++.+.+.+|.++..|++.+++++++..++++++..+|.|+|++++|||+|++||+|||+ +.||+||.+||+|++.++++
T Consensus 83 ~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~-~~gp~Ly~~D~~Gs~~~~~~ 161 (253)
T PTZ00246 83 ANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDE-NLGYQLYHTDPSGNYSGWKA 161 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeC-CCCcEEEEECCCCCEecceE
Confidence 99999999999999999999999999999999999999999999999999999999996 67999999999999999999
Q ss_pred eeecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCC-----CEEEccHHHHHHHHHHH
Q 025729 161 NATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVES---GGKNIEVAVMTREH-----GLRQLEEAEIDAIVSEI 231 (249)
Q Consensus 161 ~aiG~g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~~---~~~~iev~ii~~~g-----~~~~l~~~ei~~~~~~i 231 (249)
+|+|+|+.+++++|++.|+++|+ +||++++++||..+..+ ++++++|++|+++| .|++++++||++++.++
T Consensus 162 ~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l~~~ 241 (253)
T PTZ00246 162 TAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAELLKKV 241 (253)
T ss_pred EEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHHHHH
Confidence 99999999999999999999999 99999999999999875 46899999999864 38999999999999999
Q ss_pred HHHH
Q 025729 232 EAEK 235 (249)
Q Consensus 232 ~~~~ 235 (249)
+...
T Consensus 242 ~~~~ 245 (253)
T PTZ00246 242 TQEY 245 (253)
T ss_pred hhhh
Confidence 7655
No 5
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=3.3e-59 Score=401.09 Aligned_cols=228 Identities=48% Similarity=0.789 Sum_probs=218.3
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHH
Q 025729 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADA 81 (249)
Q Consensus 2 ~~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 81 (249)
++||.++|+|||+|||+|||||.+|+++|+|+|||+++||||||+|++.+..+...++.+||+.|++|++|++||..+|+
T Consensus 8 ~~y~~~~~~fsp~Gr~~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 87 (241)
T PRK03996 8 MGYDRAITIFSPDGRLYQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAASAGLVADA 87 (241)
T ss_pred cccCCCCceECCCCeEhHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEcccHHHH
Confidence 57999999999999999999999999999999999999999999999998877777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceee
Q 025729 82 RVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (249)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~ 161 (249)
+.++++++.++..|+++++++++++.+++++++.+|.|+++++.|||+|++|||||| +.||+||.+||+|++.+++++
T Consensus 88 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d--~~gp~Ly~id~~G~~~~~~~~ 165 (241)
T PRK03996 88 RVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVD--DGGPRLFETDPSGAYLEYKAT 165 (241)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEe--CCcCEEEEECCCCCeecceEE
Confidence 999999999999999999999999999999999999999999999999999999999 468999999999999999999
Q ss_pred eecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcCC-CEEEccHHHHHHHHHHH
Q 025729 162 ATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVES--GGKNIEVAVMTREH-GLRQLEEAEIDAIVSEI 231 (249)
Q Consensus 162 aiG~g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~~--~~~~iev~ii~~~g-~~~~l~~~ei~~~~~~i 231 (249)
|+|+++..++++||+.|+++|+ +||++++++||..+.++ ++++++|++++++| +|+.++++||+++++++
T Consensus 166 a~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~~~~~~~i~i~ii~~~~~~~~~~~~~ei~~~~~~~ 239 (241)
T PRK03996 166 AIGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEGKLDPENVEIAYIDVETKKFRKLSVEEIEKYLEKL 239 (241)
T ss_pred EECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCcEEECCHHHHHHHHHHh
Confidence 9999999999999999999999 99999999999999864 57789999999976 49999999999998875
No 6
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.2e-58 Score=393.44 Aligned_cols=220 Identities=50% Similarity=0.814 Sum_probs=210.3
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHH
Q 025729 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADA 81 (249)
Q Consensus 2 ~~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 81 (249)
|+||.++|+|||+|||+|||||.+|+++|+|+|||+++||||||+|++.+.+++..++.+||++|++|++|++||..+|+
T Consensus 1 ~~~~~~~~~f~p~Grl~Qieya~~av~~G~tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~ 80 (224)
T TIGR03633 1 MGYDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVADA 80 (224)
T ss_pred CCCCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHhH
Confidence 79999999999999999999999999999999999999999999999998777777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceee
Q 025729 82 RVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (249)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~ 161 (249)
+.+.+.++.++..|+++++++++++.+++++++.+|.|+++++.|||+|++||+|+| +++|+||.+||.|++.+++++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d--~~~~~Ly~~D~~G~~~~~~~~ 158 (224)
T TIGR03633 81 RVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVD--DGGPRLFETDPSGALLEYKAT 158 (224)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEe--CCcCEEEEECCCCCeecceEE
Confidence 999999999999999999999999999999999999999999999999999999999 578999999999999999999
Q ss_pred eecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcCCC-EEEccHHH
Q 025729 162 ATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVES--GGKNIEVAVMTREHG-LRQLEEAE 223 (249)
Q Consensus 162 aiG~g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~~--~~~~iev~ii~~~g~-~~~l~~~e 223 (249)
++|+++.+++++|+++|+++|+ +||++++++||..+.+. ++++++|++|+++|+ |+.++++|
T Consensus 159 a~G~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~d~~~~~~i~i~ii~~~g~~~~~~~~~~ 224 (224)
T TIGR03633 159 AIGAGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVEDKLTPENVEVAYITVEDKKFRKLSVEE 224 (224)
T ss_pred EECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCCcEEECCCCC
Confidence 9999999999999999999999 99999999999998863 577899999999764 88888764
No 7
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-58 Score=389.57 Aligned_cols=207 Identities=37% Similarity=0.533 Sum_probs=199.0
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHH
Q 025729 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADA 81 (249)
Q Consensus 2 ~~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 81 (249)
.+||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++.+...++.+|||+|++|++|++||..+|+
T Consensus 2 ~~yd~~~t~fsp~Grl~Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~ 81 (212)
T cd03751 2 TGYDLSASTFSPDGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLADG 81 (212)
T ss_pred CCccCCCceECCCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHhH
Confidence 58999999999999999999999999999999999999999999999998877777789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceee
Q 025729 82 RVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (249)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~ 161 (249)
+.+.+++|.++..|+++++++++++.++++|++++|.|++++++|||+|++||+||| ++||+||.+||+|++.+++++
T Consensus 82 ~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D--~~gp~Ly~~D~~Gs~~~~~~~ 159 (212)
T cd03751 82 RHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYD--SDGPQLYMIEPSGVSYGYFGC 159 (212)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEe--CCcCEEEEECCCCCEEeeEEE
Confidence 999999999999999999999999999999999999999999999999999999999 468999999999999999999
Q ss_pred eecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHh---cCCCcEEEEEE
Q 025729 162 ATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVE---SGGKNIEVAVM 210 (249)
Q Consensus 162 aiG~g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~---~~~~~iev~ii 210 (249)
|+|+|+.+++++||++|+++|| +||+++++++|..+++ .+..+|||+++
T Consensus 160 a~G~g~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 160 AIGKGKQAAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred EECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 9999999999999999999999 9999999999999998 35678999874
No 8
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.8e-58 Score=388.10 Aligned_cols=206 Identities=82% Similarity=1.227 Sum_probs=199.7
Q ss_pred CCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHHHH
Q 025729 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARV 83 (249)
Q Consensus 4 yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 83 (249)
||+++|+|||||||+|||||.+|+++|+|+|||+++||||||+|++.+..++.+++.+||++|++|++|++||+.+|++.
T Consensus 1 ~d~~~~~fsp~Gr~~Qveya~~av~~G~t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (207)
T cd03755 1 YDRAITVFSPDGHLFQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADARV 80 (207)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHHH
Confidence 89999999999999999999999999999999999999999999998777777778999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeee
Q 025729 84 LVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANAT 163 (249)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~ai 163 (249)
+.+++|.++..|+++++++++++.+++++++++|.|+++++.|||+|++||+|||+ +++|+||.+||+|++.+++++|+
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~-~~~p~Ly~iD~~G~~~~~~~~a~ 159 (207)
T cd03755 81 LINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDP-DGTPRLYQTDPSGTYSAWKANAI 159 (207)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeC-CCCeEEEEECCCcCEEcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999996 67999999999999999999999
Q ss_pred cCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhcCCCcEEEEEE
Q 025729 164 GRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVESGGKNIEVAVM 210 (249)
Q Consensus 164 G~g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~~~~~~iev~ii 210 (249)
|+|+.+++++||++|+++|+ +||++++++||..+.+.++.++||+++
T Consensus 160 G~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~~~~~~e~~~~ 207 (207)
T cd03755 160 GRNSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQSGSKNIELAVM 207 (207)
T ss_pred CCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEEC
Confidence 99999999999999999999 999999999999999888889999985
No 9
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-57 Score=384.55 Aligned_cols=208 Identities=40% Similarity=0.693 Sum_probs=198.8
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCccccccc-CcccceEEecCcEEEEEeccHHH
Q 025729 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDS-RMVRKIVSLDNHIALACAGLKAD 80 (249)
Q Consensus 2 ~~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~-~~~~Ki~~i~~~i~~~~sG~~~D 80 (249)
.+||+.+|+|||||||+|||||.+|+++|+|+|||+++||||||+|++.+++++.. ++.+||++|++|++|++||..+|
T Consensus 1 ~~yd~~~~~fsp~Grl~Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (213)
T cd03752 1 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSD 80 (213)
T ss_pred CCcCCCCceECCCCEEhHHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHh
Confidence 47999999999999999999999999999999999999999999999998876554 48999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceeccee
Q 025729 81 ARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (249)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~ 160 (249)
++.+.+++|.++..|+++++++|+++.+++.|+..+|.|+++++.|||+|++|++|||+ +.||+||.+||+|++.++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~-~~g~~ly~~d~~G~~~~~~~ 159 (213)
T cd03752 81 ANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDK-HYGFQLYQSDPSGNYSGWKA 159 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeC-CCCCEEEEECCCCCeeeeeE
Confidence 99999999999999999999999999999999999999999999999999999999996 57899999999999999999
Q ss_pred eeecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEE
Q 025729 161 NATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVES---GGKNIEVAVM 210 (249)
Q Consensus 161 ~aiG~g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~~---~~~~iev~ii 210 (249)
+|+|+++.+++++||++|+++|+ +|+++++++||..+.++ .+.+++|+++
T Consensus 160 ~a~G~gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 160 TAIGNNNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred EEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 99999999999999999999999 99999999999999875 4678999875
No 10
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.5e-57 Score=380.14 Aligned_cols=207 Identities=39% Similarity=0.630 Sum_probs=197.1
Q ss_pred CCCCCCcccCCCCcchhhhhHHHHHhc-CCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHH
Q 025729 3 RYDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADA 81 (249)
Q Consensus 3 ~yd~~~~~fspeG~l~Qveya~~a~~~-G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 81 (249)
+||+++|+|||||||+|||||++|+++ |+|+|||+++||||||+|++.+.+++.+++.+|||+|++|++|++||+.+|+
T Consensus 1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~ 80 (215)
T cd03754 1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADS 80 (215)
T ss_pred CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEechhhH
Confidence 699999999999999999999999975 7899999999999999999998877766689999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceee
Q 025729 82 RVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (249)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~ 161 (249)
+.+.+++|.++..|+++++++++++.+|+++++++|.|+++++.|||+|++|++|||+ ++||+||.+||+|++.+++++
T Consensus 81 ~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~-~~gp~Ly~~Dp~Gs~~~~~~~ 159 (215)
T cd03754 81 RSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDE-ELGPQLYKCDPAGYFAGYKAT 159 (215)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeC-CCCeEEEEEcCCccEEeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999996 679999999999999999999
Q ss_pred eecCCchHHHHHHHhhhccC--C--c-HHHHHHHHHHHHHHHhc--CCCcEEEEEE
Q 025729 162 ATGRNSNSIREFLEKNYKET--S--G-QETVKLAIRALLEVVES--GGKNIEVAVM 210 (249)
Q Consensus 162 aiG~g~~~~~~~Le~~~~~~--~--s-~eai~la~~al~~~~~~--~~~~iev~ii 210 (249)
|+|+|+.+++++||++|+++ | + +|+++++++||..+.++ .++++||+|+
T Consensus 160 a~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~~~~~ei~~~ 215 (215)
T cd03754 160 AAGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTDFKATEIEVGVV 215 (215)
T ss_pred EECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 99999999999999999985 7 9 99999999999999865 5778999885
No 11
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-56 Score=376.67 Aligned_cols=204 Identities=41% Similarity=0.664 Sum_probs=194.0
Q ss_pred CCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHHHH
Q 025729 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARV 83 (249)
Q Consensus 4 yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 83 (249)
||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++. ++.+|||+|++|++|++||+.+|++.
T Consensus 1 yd~~~t~fsp~Grl~Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~~l~--~~~~KI~~I~~~i~~~~sG~~~D~~~ 78 (211)
T cd03749 1 YDTDVTTWSPQGRLFQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATSELS--SYQKKIFKVDDHIGIAIAGLTADARV 78 (211)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCccccC--CccccEEEeCCCEEEEEEeChHhHHH
Confidence 8999999999999999999999999999999999999999999999877653 36799999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeee
Q 025729 84 LVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANAT 163 (249)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~ai 163 (249)
+.+++|.++..|+++++++++++.+++.+++.+|.|+++.+.|||+|++||+||| +.||+||.+||+|++.+++++|+
T Consensus 79 l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D--~~gp~Ly~~Dp~G~~~~~~~~a~ 156 (211)
T cd03749 79 LSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYD--ESGPHLFQTCPSGNYFEYKATSI 156 (211)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEc--CCCCeEEEECCCcCEeeeeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999 45899999999999999999999
Q ss_pred cCCchHHHHHHHhhhc--cCCc-HHHHHHHHHHHHHHHh----cCCCcEEEEEEE
Q 025729 164 GRNSNSIREFLEKNYK--ETSG-QETVKLAIRALLEVVE----SGGKNIEVAVMT 211 (249)
Q Consensus 164 G~g~~~~~~~Le~~~~--~~~s-~eai~la~~al~~~~~----~~~~~iev~ii~ 211 (249)
|+++..++++||++|+ ++|+ +|++++++++|+.+++ .++.+|||++++
T Consensus 157 G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 157 GARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred CCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 9999999999999999 5999 9999999999999986 346799999984
No 12
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.7e-56 Score=375.86 Aligned_cols=207 Identities=50% Similarity=0.847 Sum_probs=199.8
Q ss_pred CCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHHH
Q 025729 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADAR 82 (249)
Q Consensus 3 ~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 82 (249)
+||.++|+|||+|||+|+|||.+|+++|+|+|||+++||||+|+|++.+..++.+++.+||++|++|++|++||+.+|++
T Consensus 1 ~y~~~~~~fsp~G~l~Q~eya~~av~~G~t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 80 (211)
T cd03756 1 GYDRAITVFSPDGRLYQVEYAREAVKRGTTALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADAR 80 (211)
T ss_pred CCCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHHH
Confidence 69999999999999999999999999999999999999999999999987777778999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeee
Q 025729 83 VLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANA 162 (249)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~a 162 (249)
.+.+.++.++..|+++++++++++.+++++++.+|.|++++++|||++++||+||| +.+|+||.+||.|++.+++++|
T Consensus 81 ~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D--~~~~~ly~vd~~G~~~~~~~~a 158 (211)
T cd03756 81 VLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVD--DGGPRLFETDPSGAYNEYKATA 158 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEe--CCCCEEEEECCCCCeeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999 5689999999999999999999
Q ss_pred ecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEE
Q 025729 163 TGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVES--GGKNIEVAVMT 211 (249)
Q Consensus 163 iG~g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~~--~~~~iev~ii~ 211 (249)
+|+++.+++++||++|+++|+ +||++++++||..+.++ .+++++|++|+
T Consensus 159 ~G~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~~~~~~~~v~ii~ 210 (211)
T cd03756 159 IGSGRQAVTEFLEKEYKEDMSLEEAIELALKALYAALEENETPENVEIAYVT 210 (211)
T ss_pred ECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEe
Confidence 999999999999999999999 99999999999998875 57899999986
No 13
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-56 Score=378.02 Aligned_cols=228 Identities=47% Similarity=0.792 Sum_probs=214.7
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHhcC-CcEEEEEeCCEEEEEEeccCccc-ccccCcccceEEecCcEEEEEeccHH
Q 025729 2 ARYDRAITVFSPDGHLFQVEYALEAVRKG-NAAVGVRGTDIVVLGVEKKSAVK-LQDSRMVRKIVSLDNHIALACAGLKA 79 (249)
Q Consensus 2 ~~yd~~~~~fspeG~l~Qveya~~a~~~G-~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~ 79 (249)
++||+.+++|||+|+++|+|||.+++++| +|+|||+++||||||+|+|.+++ ++..++.+|||+|+|||+|++||+.+
T Consensus 1 ~~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~a 80 (236)
T COG0638 1 AGYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAA 80 (236)
T ss_pred CCCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcH
Confidence 57999999999999999999999999875 99999999999999999999996 45566799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecce
Q 025729 80 DARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK 159 (249)
Q Consensus 80 D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~ 159 (249)
|++.++++++.+++.|++.++++++++.+++++++++|.|+++ +|||+|++||||+| +++|+||.+||+|++.+++
T Consensus 81 Da~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--~rP~gv~~iiaG~d--~~~p~Ly~~Dp~G~~~~~~ 156 (236)
T COG0638 81 DAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--GRPYGVSLLVAGVD--DGGPRLYSTDPSGSYNEYK 156 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--cccceEEEEEEEEc--CCCCeEEEECCCCceeecC
Confidence 9999999999999999999999999999999999999999987 89999999999999 4789999999999999999
Q ss_pred eeeecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEccHHHHHHHHHHHHH
Q 025729 160 ANATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVES---GGKNIEVAVMTREHGLRQLEEAEIDAIVSEIEA 233 (249)
Q Consensus 160 ~~aiG~g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~~---~~~~iev~ii~~~g~~~~l~~~ei~~~~~~i~~ 233 (249)
++|+|+|++.++++||++|+++|+ +||++++++||..+.++ .+.+++|++++++..++.++++++..++.+++.
T Consensus 157 ~~a~Gsgs~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~~~~~~~~~~~~~ 234 (236)
T COG0638 157 ATAIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGEEIKKLLDDLSE 234 (236)
T ss_pred EEEEcCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999999999999985 356789999999544999999999999888754
No 14
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-56 Score=359.17 Aligned_cols=235 Identities=37% Similarity=0.621 Sum_probs=221.0
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccc-cCcccceEEecCcEEEEEeccHHH
Q 025729 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQD-SRMVRKIVSLDNHIALACAGLKAD 80 (249)
Q Consensus 2 ~~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D 80 (249)
+.||...|+|||||||+|||||++++.+.+|+|||.++|||||+++++++++|.+ ..+.+||++|+|||+|+++|+.+|
T Consensus 3 r~ydsrttiFspEGRLyQVEyAmeais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~D 82 (249)
T KOG0178|consen 3 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSD 82 (249)
T ss_pred cCcCCcccccCCCcchHHHHHHHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEeccccc
Confidence 4589999999999999999999999999999999999999999999999998764 467999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceeccee
Q 025729 81 ARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (249)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~ 160 (249)
+..+++++|..+++|.++||++||++.|++.|+++.|.|||++|.||||||+|.+|||. ..|.+||+.||+|++..|++
T Consensus 83 AnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~-~~gyqLy~SdPSGny~gWka 161 (249)
T KOG0178|consen 83 ANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDD-RYGYQLYQSDPSGNYGGWKA 161 (249)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceec-CcceEEEecCCCCCccccce
Confidence 99999999999999999999999999999999999999999999999999999999997 78899999999999999999
Q ss_pred eeecCCchHHHHHHHhhhccCC-c-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCC---CEEEccHHHHHHHHHHHH
Q 025729 161 NATGRNSNSIREFLEKNYKETS-G-QETVKLAIRALLEVVES---GGKNIEVAVMTREH---GLRQLEEAEIDAIVSEIE 232 (249)
Q Consensus 161 ~aiG~g~~~~~~~Le~~~~~~~-s-~eai~la~~al~~~~~~---~~~~iev~ii~~~g---~~~~l~~~ei~~~~~~i~ 232 (249)
.++|.++..++..|+..|+++. + ++|+.+|++.|..+++. +...+|++.++++. .++.++++||.++++++.
T Consensus 162 ~ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~i~~~~ev~kll~k~~ 241 (249)
T KOG0178|consen 162 TCIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLKILKKDEVLKLLEKYH 241 (249)
T ss_pred eeeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEEecCHHHHHHHHHHhh
Confidence 9999999999999999999765 5 99999999999999875 46789999999854 477899999999999998
Q ss_pred HHHHH
Q 025729 233 AEKAA 237 (249)
Q Consensus 233 ~~~~~ 237 (249)
+.+.+
T Consensus 242 ~~~~~ 246 (249)
T KOG0178|consen 242 ETQRQ 246 (249)
T ss_pred hhhhh
Confidence 77655
No 15
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-56 Score=356.39 Aligned_cols=226 Identities=41% Similarity=0.671 Sum_probs=218.9
Q ss_pred CCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHHH
Q 025729 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADAR 82 (249)
Q Consensus 3 ~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 82 (249)
+|.-++|+|||+|+|-|+|||..|+.+|.+.|||+-.||||||++++..+.|.+..+.+|++.|.+||+|++||..+|++
T Consensus 5 ~y~fslTtFSpsGKL~QieyAL~Av~~G~~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~R 84 (233)
T KOG0181|consen 5 GYSFSLTTFSPSGKLVQIEYALTAVVNGQTSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMGPDYR 84 (233)
T ss_pred ccceeeEEEcCCCceehHHHHHHHHhCCCCceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCCCcee
Confidence 68999999999999999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeee
Q 025729 83 VLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANA 162 (249)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~a 162 (249)
.+++..|+.|++|...|++++|+..|+..++..+|+|||.++.||||+++++|||| +++|.||++||+|++..|+++|
T Consensus 85 vlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~--~~~p~LyQvdPSGsyf~wkatA 162 (233)
T KOG0181|consen 85 VLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWD--EGGPLLYQVDPSGSYFAWKATA 162 (233)
T ss_pred ehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecC--CCceeEEEECCccceeehhhhh
Confidence 99999999999999999999999999999999999999999999999999999999 6799999999999999999999
Q ss_pred ecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcCCCEEEccHHHHHHHHHHH
Q 025729 163 TGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVES--GGKNIEVAVMTREHGLRQLEEAEIDAIVSEI 231 (249)
Q Consensus 163 iG~g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~~--~~~~iev~ii~~~g~~~~l~~~ei~~~~~~i 231 (249)
+|.+...++++||++|+++|. ++++..|+..|++.++- +.++|||+++..++ |++++++||+++++++
T Consensus 163 ~Gkn~v~aktFlEkR~~edleldd~ihtailtlkE~fege~~~~nieigv~~~~~-F~~lt~~eI~d~l~~l 233 (233)
T KOG0181|consen 163 MGKNYVNAKTFLEKRYNEDLELDDAIHTAILTLKESFEGEMTAKNIEIGVCGENG-FRRLTPAEIEDYLASL 233 (233)
T ss_pred hccCcchHHHHHHHHhccccccchHHHHHHHHHHHHhccccccCceEEEEecCCc-eeecCHHHHHHHHhcC
Confidence 999999999999999999999 99999999999999864 78899999999887 9999999999998753
No 16
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-55 Score=355.74 Aligned_cols=232 Identities=37% Similarity=0.582 Sum_probs=221.8
Q ss_pred CCCCCCCCcccCCCCcchhhhhHHHHHhc-CCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHH
Q 025729 1 MARYDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKA 79 (249)
Q Consensus 1 ~~~yd~~~~~fspeG~l~Qveya~~a~~~-G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~ 79 (249)
|.|||+.+|+|||||||+|||||.||+++ |-|+||++++|++|+++.++++++|++++....+|+|..+|+|+++|..+
T Consensus 6 ~agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~tG~~a 85 (246)
T KOG0182|consen 6 SAGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVITGMIA 85 (246)
T ss_pred cCCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEEecCCc
Confidence 57899999999999999999999999998 67999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecce
Q 025729 80 DARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK 159 (249)
Q Consensus 80 D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~ 159 (249)
|++..+.++|.++.+++++||++||++.||++++++.|.|||+..+||+||.+++.|+|+ +.||.+|.+||.|-+..++
T Consensus 86 Dar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~-E~gP~vYk~DpAGyy~g~k 164 (246)
T KOG0182|consen 86 DARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDE-ERGPSVYKTDPAGYYYGFK 164 (246)
T ss_pred chHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEecc-ccCcceEeecCccccccce
Confidence 999999999999999999999999999999999999999999999999999999999998 7899999999999999999
Q ss_pred eeeecCCchHHHHHHHhhhccC--Cc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcCC-CEEEccHHHHHHHHHHHHH
Q 025729 160 ANATGRNSNSIREFLEKNYKET--SG-QETVKLAIRALLEVVES--GGKNIEVAVMTREH-GLRQLEEAEIDAIVSEIEA 233 (249)
Q Consensus 160 ~~aiG~g~~~~~~~Le~~~~~~--~s-~eai~la~~al~~~~~~--~~~~iev~ii~~~g-~~~~l~~~ei~~~~~~i~~ 233 (249)
+++.|.....+..+||++|+++ ++ ++++++++.||..++.. ....+||++++++. .|+.|+.+||+++|..|++
T Consensus 165 AtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~se~EVgvv~~~~p~f~~Ls~~eie~hL~~IAE 244 (246)
T KOG0182|consen 165 ATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGIDFKSSELEVGVVTVDNPEFRILSAEEIEEHLQAIAE 244 (246)
T ss_pred eeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcccCCcceEEEEEEcCCcceeeccHHHHHHHHHHhhh
Confidence 9999999999999999999987 67 99999999999999864 46689999999854 4999999999999999965
No 17
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=3.5e-55 Score=368.58 Aligned_cols=206 Identities=58% Similarity=0.894 Sum_probs=197.9
Q ss_pred CCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHHHH
Q 025729 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARV 83 (249)
Q Consensus 4 yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 83 (249)
||+++|+|||||||+|||||.+++++|+|+|||+++||||+|+|++.+..++..++.+||++|++|++|++||..+|++.
T Consensus 1 ~~~~~~~f~~~G~~~q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 80 (209)
T cd01911 1 YDRSITTFSPEGRLFQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADARV 80 (209)
T ss_pred CCCCCccCCCCCEEeHHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHHH
Confidence 89999999999999999999999999999999999999999999999887776788999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeee
Q 025729 84 LVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANAT 163 (249)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~ai 163 (249)
+.+.++.++..|++++|++++++.+++++++.+|.|++++++|||+|++||+|||+ +++|+||.+||.|++.+++++++
T Consensus 81 l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~-~~~~~Ly~iD~~G~~~~~~~~a~ 159 (209)
T cd01911 81 LVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDE-EGGPQLYQTDPSGTYFGYKATAI 159 (209)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcC-CCCcEEEEECCCCCeeeeeEEEe
Confidence 99999999999999999999999999999999999999999999999999999996 56999999999999999999999
Q ss_pred cCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEE
Q 025729 164 GRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVES--GGKNIEVAVM 210 (249)
Q Consensus 164 G~g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~~--~~~~iev~ii 210 (249)
|+++.+++++|++.|+++|+ +||++++++||..+.++ ++++++|+++
T Consensus 160 G~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~~~~~~~i~i~ 209 (209)
T cd01911 160 GKGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDKKAKNIEIAVV 209 (209)
T ss_pred CCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccCCCCcEEEEEC
Confidence 99999999999999999999 99999999999999875 5678998874
No 18
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.2e-55 Score=368.10 Aligned_cols=205 Identities=42% Similarity=0.720 Sum_probs=194.6
Q ss_pred CCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHHHH
Q 025729 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARV 83 (249)
Q Consensus 4 yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~ 83 (249)
||.++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++...++.+||+.|++|++|++||+.+|++.
T Consensus 1 ~~~~~~~f~p~G~~~Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (213)
T cd03753 1 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADART 80 (213)
T ss_pred CCCCCccCCCCCeEhHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHHH
Confidence 89999999999999999999999999999999999999999999999877777778999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccC-----CCCcceeeeEEEEeeCCCCcceEEEECCCCceecc
Q 025729 84 LVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSG-----GVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW 158 (249)
Q Consensus 84 l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~-----~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~ 158 (249)
+.+.++.+++.|+++++++++++.+++++++.+|.|++.. ..|||+|++||+||| ++||+||.+||.|++.++
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D--~~gp~Ly~vd~~G~~~~~ 158 (213)
T cd03753 81 LIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVD--ENGPQLFHTDPSGTFTRC 158 (213)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEc--CCCCEEEEECCCCCeecc
Confidence 9999999999999999999999999999999999998743 479999999999999 578999999999999999
Q ss_pred eeeeecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEE
Q 025729 159 KANATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVES--GGKNIEVAVM 210 (249)
Q Consensus 159 ~~~aiG~g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~~--~~~~iev~ii 210 (249)
+++|+|+++++++++|+++|+++|+ +||++++++||+.+.+. ++.++||+++
T Consensus 159 ~~~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~~~~~~~ei~~~ 213 (213)
T cd03753 159 DAKAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVMEEKLNSTNVELATV 213 (213)
T ss_pred cEEEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEC
Confidence 9999999999999999999999999 99999999999998764 5678999875
No 19
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-55 Score=358.35 Aligned_cols=226 Identities=35% Similarity=0.495 Sum_probs=211.5
Q ss_pred CCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHHH
Q 025729 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADAR 82 (249)
Q Consensus 3 ~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 82 (249)
|||++.++|||+||+||||||.||+.+|+|||||||+|||||++++.++++|..+....||+.|++||+|+++|+.+|++
T Consensus 7 GyDls~s~fSpdGrvfQveYA~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~avaGl~~Dg~ 86 (254)
T KOG0184|consen 7 GYDLSASTFSPDGRVFQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVAGLIPDGR 86 (254)
T ss_pred cccccceeeCCCCceehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEeccccchH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeee
Q 025729 83 VLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANA 162 (249)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~a 162 (249)
.+.+++|.++.+|+.+|+.++|...++.+++++.|.||.++..|||||+.++++|| ++||+||.++|+|..+.|+++|
T Consensus 87 ~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd--~~g~~LymiepSG~~~~Y~~aa 164 (254)
T KOG0184|consen 87 HLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYD--DEGPQLYMIEPSGSSYGYKGAA 164 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEe--CCCceEEEEcCCCCccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999 7899999999999999999999
Q ss_pred ecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEc--CCCEEEccHHHHHHHHHHH
Q 025729 163 TGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVES---GGKNIEVAVMTR--EHGLRQLEEAEIDAIVSEI 231 (249)
Q Consensus 163 iG~g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~~---~~~~iev~ii~~--~g~~~~l~~~ei~~~~~~i 231 (249)
+|.|-+.|++.|||+--++|+ +|+++.+.+.|+.+.+. ....||++|+.. +| .++.-|+||.+..++.
T Consensus 165 iGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG-~h~~vp~el~~ea~~~ 238 (254)
T KOG0184|consen 165 IGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNG-LHEKVPSELLEEAEKY 238 (254)
T ss_pred ccchhHHHHHHHHhcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCC-ccccCcHHHHHHHHHH
Confidence 999999999999999888999 99999999999999875 355799999995 45 5555555665554444
No 20
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-50 Score=328.10 Aligned_cols=227 Identities=35% Similarity=0.585 Sum_probs=213.3
Q ss_pred CCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHHH
Q 025729 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADAR 82 (249)
Q Consensus 3 ~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 82 (249)
.||.++|+|||+|||+|||||++|+++|++.||+|.++-.||++-++..+.|. ..++|||+|++|++++++|+.+|++
T Consensus 5 qyd~d~t~wsPqGrl~QvEya~EavkqGsatVGLks~thaVLvAl~r~~seLs--s~QkKi~~iD~h~g~siAGLt~Dar 82 (264)
T KOG0863|consen 5 QYDNDVTTWSPQGRLHQVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQSELS--SHQKKIFKIDDHIGISIAGLTADAR 82 (264)
T ss_pred cccCceeEECCcceehHHHHHHHHHhcccceEeecccceEEEeeeccchhHHH--HhhheeEecccccceEEeccCcchH
Confidence 49999999999999999999999999999999999999999999888766553 3689999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeee
Q 025729 83 VLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANA 162 (249)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~a 162 (249)
.|.++++.+|..+++.|++++++..|+..|.+.+|..||+.+.|||||.++++||| +.||+||.++|+|++.++++.+
T Consensus 83 vl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYD--e~G~hl~e~~Psg~v~e~~g~s 160 (264)
T KOG0863|consen 83 VLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYD--ESGPHLYEFCPSGNVFECKGMS 160 (264)
T ss_pred HHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeec--CCCceeEEEcCCccEEEEeeee
Confidence 99999999999999999999999999999999999999999999999999999999 6899999999999999999999
Q ss_pred ecCCchHHHHHHHhhhc--cCCc-HHHHHHHHHHHHHHHhc----CCCcEEEEEEEcCCCEEEccHHHHHHHHHHHHH
Q 025729 163 TGRNSNSIREFLEKNYK--ETSG-QETVKLAIRALLEVVES----GGKNIEVAVMTREHGLRQLEEAEIDAIVSEIEA 233 (249)
Q Consensus 163 iG~g~~~~~~~Le~~~~--~~~s-~eai~la~~al~~~~~~----~~~~iev~ii~~~g~~~~l~~~ei~~~~~~i~~ 233 (249)
||+.++.++++||++.. ++++ +|.++.++.||+.++.. +..+++|+|+.++.+|..++.+++.+++.....
T Consensus 161 IGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf~~~d~~~~~k~~~~~~~ 238 (264)
T KOG0863|consen 161 IGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPFTILDQKDVAKYVDLFKK 238 (264)
T ss_pred cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCceEeecHHHHHHHHHHhhc
Confidence 99999999999999876 5788 99999999999999863 467999999999988999999999988876653
No 21
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=2.9e-46 Score=317.45 Aligned_cols=201 Identities=18% Similarity=0.250 Sum_probs=183.8
Q ss_pred hhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhc
Q 025729 20 VEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTV 99 (249)
Q Consensus 20 veya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~ 99 (249)
-|||++|+++|+|+|||+++|||||++|++. ++.+|||+|++||+|+++|+.+|++.++++++.++..|++.|
T Consensus 17 ~EYA~kav~~g~T~VGIk~kdgVVLaaek~~-------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~ 89 (228)
T TIGR03691 17 AELARKGIARGRSVVVLTYADGILFVAENPS-------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSY 89 (228)
T ss_pred HHHHHHHHHcCCcEEEEEeCCeEEEEEecCC-------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 5999999999999999999999999999973 358899999999999999999999999999999999999999
Q ss_pred C-CCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecce-eeeecCCchHHHHHHHhh
Q 025729 100 E-DPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK-ANATGRNSNSIREFLEKN 177 (249)
Q Consensus 100 ~-~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~-~~aiG~g~~~~~~~Le~~ 177 (249)
+ .+++++.+|+++++.++.++ +++.|||+|++|++|||+.+.||+||.+||+|++.+++ ++|+|+|++.++++||++
T Consensus 90 ~~~~~~v~~la~~~tq~~~~~~-~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~ 168 (228)
T TIGR03691 90 DRRDVTGRGLANAYAQTLGTIF-TEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKES 168 (228)
T ss_pred CCCCccHHHHHHHHHhhccccc-ccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHh
Confidence 8 78999999988888877666 56789999999999998434689999999999999976 899999999999999999
Q ss_pred hccCCc-HHHHHHHHHHHHHHHh-----cCCCcEEEEEEEcCC---CEEEccHHHHHHHH
Q 025729 178 YKETSG-QETVKLAIRALLEVVE-----SGGKNIEVAVMTREH---GLRQLEEAEIDAIV 228 (249)
Q Consensus 178 ~~~~~s-~eai~la~~al~~~~~-----~~~~~iev~ii~~~g---~~~~l~~~ei~~~~ 228 (249)
|+++|| +|+++++++||..+.+ .+..+|||+++++++ .|+.|+++||++++
T Consensus 169 y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~~l 228 (228)
T TIGR03691 169 YRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEALERLL 228 (228)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHHHhhC
Confidence 999999 9999999999999964 467899999999643 59999999998764
No 22
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=2.2e-45 Score=310.98 Aligned_cols=204 Identities=20% Similarity=0.304 Sum_probs=187.9
Q ss_pred cCCcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHH
Q 025729 29 KGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEY 107 (249)
Q Consensus 29 ~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 107 (249)
+|+|+|||+++||||||+|++.++ +++.+++.+|||+|++|++|+++|..+|++.+.+++|.+++.|+++++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 489999999999999999999998 7888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCC-ceecceeeeecCCchHHHHHHHhhhccCCc-HH
Q 025729 108 ITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSG-TFSAWKANATGRNSNSIREFLEKNYKETSG-QE 185 (249)
Q Consensus 108 la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G-~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s-~e 185 (249)
++++|++++|.++ ...+|||+|++||||||+.+++|+||.+||+| ++.+++++|+|+|+.+++++||++|+++|| +|
T Consensus 81 la~~ls~~~~~~~-~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~ee 159 (219)
T TIGR03690 81 KANRLAAMVRGNL-PAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDD 159 (219)
T ss_pred HHHHHHHHHHhhh-hhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHH
Confidence 9999999999877 45689999999999999623689999999999 577789999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhcC---CC--c-----EEEEEEEcCCCEEEccHHHHHHHHHHHHHH
Q 025729 186 TVKLAIRALLEVVESG---GK--N-----IEVAVMTREHGLRQLEEAEIDAIVSEIEAE 234 (249)
Q Consensus 186 ai~la~~al~~~~~~~---~~--~-----iev~ii~~~g~~~~l~~~ei~~~~~~i~~~ 234 (249)
|++++++||..+.+++ ++ . ++|++++++| |+.++++||+.++.++...
T Consensus 160 ai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g-~~~l~~~ei~~~~~~~~~~ 217 (219)
T TIGR03690 160 ALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADG-ARRVPESELEELARAIVES 217 (219)
T ss_pred HHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCc-eEEcCHHHHHHHHHHHHhc
Confidence 9999999999999853 33 2 3999999887 9999999999999887643
No 23
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=1.3e-44 Score=310.69 Aligned_cols=201 Identities=20% Similarity=0.321 Sum_probs=187.3
Q ss_pred HHhcCCcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcC
Q 025729 26 AVRKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVT 104 (249)
Q Consensus 26 a~~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 104 (249)
.+++|+|+|||+++||||||+|++.+. .++.+++.+||++|++|++++++|..+|++.+.+++|.+++.|++++|++|+
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 567899999999999999999999886 7788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcceee--eEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhccCC
Q 025729 105 VEYITRYIAGLQQKYTQSGGVRPFGLS--TLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETS 182 (249)
Q Consensus 105 ~~~la~~l~~~~~~~~~~~~~rP~~v~--~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~ 182 (249)
++.++++|++++|.+ ||++++ +|+|||| ++||+||.+||.|++.+++++|+|+|+.+++++||+.|+++|
T Consensus 115 v~~la~~ls~~l~~~------R~~~~~v~~iiaG~D--~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dm 186 (247)
T PTZ00488 115 VAAASKILANIVWNY------KGMGLSMGTMICGWD--KKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDL 186 (247)
T ss_pred HHHHHHHHHHHHHhc------CCCCeeEEEEEEEEe--CCCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCC
Confidence 999999999999765 555554 8999999 468999999999999999999999999999999999999999
Q ss_pred c-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEccHHHHHHHHHHHHHHH
Q 025729 183 G-QETVKLAIRALLEVVES---GGKNIEVAVMTREHGLRQLEEAEIDAIVSEIEAEK 235 (249)
Q Consensus 183 s-~eai~la~~al~~~~~~---~~~~iev~ii~~~g~~~~l~~~ei~~~~~~i~~~~ 235 (249)
+ +||++++++||..+..+ ++++++|++|+++| ++.++++||++++++++..+
T Consensus 187 s~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g-~~~l~~~ei~~~l~~~~~~~ 242 (247)
T PTZ00488 187 NDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDG-WKKISADDCFDLHQKYAAEK 242 (247)
T ss_pred CHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCc-cEECCHHHHHHHHHHHhhhc
Confidence 9 99999999999999875 57899999999998 99999999999999887543
No 24
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.1e-44 Score=298.52 Aligned_cols=185 Identities=22% Similarity=0.334 Sum_probs=174.4
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHHH
Q 025729 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|++.+. .++.+++.+|||+|++|+++++||..+|++.+.++++.++..|+++++++++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 7899999999999999999986 567888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025729 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (249)
Q Consensus 110 ~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s-~eai~ 188 (249)
+++++++|.|++.. |||++++||+|||+ ++||+||.+||+|++.+++++|+|+|+.+++++||+.|+++|| +||++
T Consensus 82 ~~l~~~~~~~~~~~--rP~~~~~li~G~d~-~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~ 158 (193)
T cd03758 82 NFTRRELAESLRSR--TPYQVNLLLAGYDK-VEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALE 158 (193)
T ss_pred HHHHHHHHHHhhcC--CCeEEEEEEEEEcC-CCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHH
Confidence 99999999887643 89999999999996 6899999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEc
Q 025729 189 LAIRALLEVVES---GGKNIEVAVMTREHGLRQL 219 (249)
Q Consensus 189 la~~al~~~~~~---~~~~iev~ii~~~g~~~~l 219 (249)
++++||+.+.++ ++++++|++|+++| ++++
T Consensus 159 l~~~a~~~~~~rd~~~~~~i~i~ii~~~g-~~~~ 191 (193)
T cd03758 159 LMKKCIKELKKRFIINLPNFTVKVVDKDG-IRDL 191 (193)
T ss_pred HHHHHHHHHHHhccccCCceEEEEEcCCC-eEeC
Confidence 999999999874 57899999999998 6654
No 25
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.3e-44 Score=299.28 Aligned_cols=186 Identities=18% Similarity=0.217 Sum_probs=174.3
Q ss_pred cCCcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHH-HhhhhcCCCcCHH
Q 025729 29 KGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQ-SHRLTVEDPVTVE 106 (249)
Q Consensus 29 ~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~i~~~ 106 (249)
.|+|+|||+++||||||+|++.+. .++.+++.+|||+|++|++++++|..+|++.+++++|.++. .|++.++.+++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 489999999999999999999984 78888889999999999999999999999999999999987 5678899999999
Q ss_pred HHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhcc--CCc-
Q 025729 107 YITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE--TSG- 183 (249)
Q Consensus 107 ~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~--~~s- 183 (249)
.+++++++.+ |++++++|||+|++|+||||+ ++||+||.+||.|++.+++++|+|+|+.+++++||+.|++ +||
T Consensus 81 ~la~~i~~~~--y~~~~~~rP~~v~~iiaG~D~-~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~ 157 (197)
T cd03760 81 EIHSYLTRVL--YNRRSKMNPLWNTLVVGGVDN-EGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTE 157 (197)
T ss_pred HHHHHHHHHH--HHHhhcCCCceEEEEEEEEcC-CCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCH
Confidence 9999999986 788888999999999999995 5899999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEE
Q 025729 184 QETVKLAIRALLEVVES---GGKNIEVAVMTREHGLRQ 218 (249)
Q Consensus 184 ~eai~la~~al~~~~~~---~~~~iev~ii~~~g~~~~ 218 (249)
+|+++++++||..+.++ ++++++|++|+++| +++
T Consensus 158 eea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g-~~~ 194 (197)
T cd03760 158 EEARALIEECMKVLYYRDARSINKYQIAVVTKEG-VEI 194 (197)
T ss_pred HHHHHHHHHHHHHHHHhccccCCceEEEEECCCC-EEe
Confidence 99999999999999874 57899999999998 654
No 26
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-43 Score=294.99 Aligned_cols=181 Identities=23% Similarity=0.376 Sum_probs=169.6
Q ss_pred cCCcEEEEEeCCEEEEEEeccCcccccc-cCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHH
Q 025729 29 KGNAAVGVRGTDIVVLGVEKKSAVKLQD-SRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEY 107 (249)
Q Consensus 29 ~G~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 107 (249)
+|+|+|||+++||||||+|++.+++++. .++.+|||+|++|++|++||..+|++.+++++|.++..|+++++++++++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 6999999999999999999999887665 557899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecce-eeeecCCchHHHHHHHhhhccCCc-HH
Q 025729 108 ITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK-ANATGRNSNSIREFLEKNYKETSG-QE 185 (249)
Q Consensus 108 la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~-~~aiG~g~~~~~~~Le~~~~~~~s-~e 185 (249)
++++|++.+ |+++ .|||+|++||||||+ +++|+||.+||.|++.+++ ++|+|+|+++++++||+.|+++|+ +|
T Consensus 82 la~~l~~~l--y~~r--~~P~~v~~ii~G~D~-~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~e 156 (195)
T cd03759 82 FSSLISSLL--YEKR--FGPYFVEPVVAGLDP-DGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDE 156 (195)
T ss_pred HHHHHHHHH--HHhc--CCCceEEEEEEEEcC-CCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHH
Confidence 999999998 4443 589999999999997 6789999999999998887 999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHhc---CCCcEEEEEEEcCC
Q 025729 186 TVKLAIRALLEVVES---GGKNIEVAVMTREH 214 (249)
Q Consensus 186 ai~la~~al~~~~~~---~~~~iev~ii~~~g 214 (249)
|++++++||..+.++ ++++++|++|+++|
T Consensus 157 a~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g 188 (195)
T cd03759 157 LFETISQALLSAVDRDALSGWGAVVYIITKDK 188 (195)
T ss_pred HHHHHHHHHHHHHhhCcccCCceEEEEEcCCc
Confidence 999999999999875 57899999999998
No 27
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.4e-43 Score=291.16 Aligned_cols=182 Identities=20% Similarity=0.316 Sum_probs=172.0
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHHH
Q 025729 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|++.++ .++.+++.+|||+|++|++++++|..+|++.+++++|.+++.|+++++++++++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999998 577778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025729 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (249)
Q Consensus 110 ~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s-~eai~ 188 (249)
+++++++|.+++ .||+|++|||||| ++||+||.+||.|++.+++++|+|+|+.+++++||++|+++|+ +||++
T Consensus 81 ~~ls~~l~~~~~----~~~~v~~li~G~D--~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~ 154 (188)
T cd03761 81 KLLSNMLYQYKG----MGLSMGTMICGWD--KTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYD 154 (188)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEe--CCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHH
Confidence 999999998864 4899999999999 5789999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEc
Q 025729 189 LAIRALLEVVES---GGKNIEVAVMTREHGLRQL 219 (249)
Q Consensus 189 la~~al~~~~~~---~~~~iev~ii~~~g~~~~l 219 (249)
++++||..+.++ ++++++|++|+++| ++++
T Consensus 155 l~~~~l~~~~~rd~~sg~~~~v~ii~~~g-~~~~ 187 (188)
T cd03761 155 LARRAIYHATHRDAYSGGNVNLYHVREDG-WRKI 187 (188)
T ss_pred HHHHHHHHHHHhcccCCCCeEEEEEcCCc-eEEc
Confidence 999999999874 57899999999998 6654
No 28
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.9e-42 Score=285.90 Aligned_cols=179 Identities=31% Similarity=0.488 Sum_probs=170.3
Q ss_pred CCcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHH
Q 025729 30 GNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYI 108 (249)
Q Consensus 30 G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (249)
|+|+|||+++||||||+|++.+. +++.+++.+|||+|++|++++++|..+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 78999999999999999999985 67778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhccCCc-HHHH
Q 025729 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETV 187 (249)
Q Consensus 109 a~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s-~eai 187 (249)
++++++++|.+ ++|||+|++|||||| ++||+||.+||.|++.+++++++|+++.+++++||+.|+++|| +||+
T Consensus 81 a~~l~~~~~~~----~~rP~~v~~ivaG~d--~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~ 154 (185)
T TIGR03634 81 ATLLSNILNSN----RFFPFIVQLLVGGVD--EEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAK 154 (185)
T ss_pred HHHHHHHHHhc----CCCCeEEEEEEEEEe--CCCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHH
Confidence 99999999775 579999999999999 4689999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhc---CCCcEEEEEEEcCC
Q 025729 188 KLAIRALLEVVES---GGKNIEVAVMTREH 214 (249)
Q Consensus 188 ~la~~al~~~~~~---~~~~iev~ii~~~g 214 (249)
+++++||..+.++ ++.+++|++++++|
T Consensus 155 ~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g 184 (185)
T TIGR03634 155 KLAVRAIKSAIERDVASGNGIDVAVITKDG 184 (185)
T ss_pred HHHHHHHHHHHHhcccCCCCEEEEEEcCCC
Confidence 9999999999885 57899999999987
No 29
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.2e-42 Score=291.89 Aligned_cols=202 Identities=18% Similarity=0.226 Sum_probs=175.9
Q ss_pred CcEEEEEeCCEEEEEEeccCcccccccCcccceEEec----CcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCC-CcCH
Q 025729 31 NAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLD----NHIALACAGLKADARVLVNRARIECQSHRLTVED-PVTV 105 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~-~i~~ 105 (249)
|.+|||+++||||||+|++.+++++..++.+|||+|+ +||+|++||..+|++.+++++|.+++.|++++|+ ++++
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v 80 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTM 80 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCH
Confidence 4689999999999999999988877666899999998 8999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHH-HhhccCC-----CCcceeeeEEEEeeCCCCcceEEEECCCCceecc----eeeeecCCchHHHHHHH
Q 025729 106 EYITRYIAGLQQ-KYTQSGG-----VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW----KANATGRNSNSIREFLE 175 (249)
Q Consensus 106 ~~la~~l~~~~~-~~~~~~~-----~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~----~~~aiG~g~~~~~~~Le 175 (249)
+.+|+++++.++ .++++.+ .|||+|++||+|||+ +.||+||.+||+|++.++ +++|+|. +.+++++||
T Consensus 81 ~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~-~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Le 158 (236)
T cd03765 81 FDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIK-GEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILD 158 (236)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEEC-CCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHH
Confidence 999999999854 4566554 489999999999996 678999999999999998 4589996 799999999
Q ss_pred hhhccCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEE-----EccHHHHHHHHHHHH-HHHHH
Q 025729 176 KNYKETSG-QETVKLAIRALLEVVES---GGKNIEVAVMTREHGLR-----QLEEAEIDAIVSEIE-AEKAA 237 (249)
Q Consensus 176 ~~~~~~~s-~eai~la~~al~~~~~~---~~~~iev~ii~~~g~~~-----~l~~~ei~~~~~~i~-~~~~~ 237 (249)
++|+++|| +||++++++||..+..+ ++.+|+|++|+++| ++ +++.+ ++++.+++ .|...
T Consensus 159 k~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G-~~~~~~~~~~~~--~~~~~~~~~~~~~~ 227 (236)
T cd03765 159 RVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDS-LQVGHYRRIEED--DPYFAMIRKAWSEA 227 (236)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCC-eeeeeeEEecCC--CHHHHHHHHHHHHH
Confidence 99999999 99999999999999985 57789999999997 33 34443 34555555 44333
No 30
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.8e-42 Score=290.73 Aligned_cols=185 Identities=21% Similarity=0.373 Sum_probs=171.6
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccCcccc-cccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCH
Q 025729 27 VRKGNAAVGVRGTDIVVLGVEKKSAVKL-QDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTV 105 (249)
Q Consensus 27 ~~~G~t~igi~~~dgVvla~d~~~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 105 (249)
+++|+|+|||+++||||||+|++.++++ +..++.+||++|++|++|++||..+|++.+.+.++.+++.|++++|+++++
T Consensus 5 ~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~ 84 (212)
T cd03757 5 TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMST 84 (212)
T ss_pred cCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCH
Confidence 3689999999999999999999999865 446789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhc------
Q 025729 106 EYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYK------ 179 (249)
Q Consensus 106 ~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~------ 179 (249)
+.++++++++++ .+ +.|||+|++||||||+ +++|+||.+||.|++.+++++|+|+|+.+++++||+.|+
T Consensus 85 ~~la~~ls~~ly--~~--R~~P~~~~~iiaG~D~-~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ 159 (212)
T cd03757 85 EAIAQLLSTILY--SR--RFFPYYVFNILAGIDE-EGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNN 159 (212)
T ss_pred HHHHHHHHHHHH--hh--cCCCeEEEEEEEEEcC-CCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCc
Confidence 999999999994 33 2479999999999996 678999999999999999999999999999999999985
Q ss_pred ---cCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEE
Q 025729 180 ---ETSG-QETVKLAIRALLEVVES---GGKNIEVAVMTREHGLR 217 (249)
Q Consensus 180 ---~~~s-~eai~la~~al~~~~~~---~~~~iev~ii~~~g~~~ 217 (249)
++|| +||++++++||+.+.++ ++++++|++|+++| ++
T Consensus 160 ~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g-~~ 203 (212)
T cd03757 160 VERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDG-IE 203 (212)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCC-EE
Confidence 8999 99999999999999875 57899999999998 44
No 31
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.6e-42 Score=282.68 Aligned_cols=183 Identities=32% Similarity=0.482 Sum_probs=172.9
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHHH
Q 025729 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|++.++ .++.+++.+||++|++|++++++|..+|++.+.+.++.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 5899999999999999999988 777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025729 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (249)
Q Consensus 110 ~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s-~eai~ 188 (249)
+++++.+|.+ ++|||+|++|+|||| +++|+||.+||.|++.+++++|+|+|+.+++++|++.|+++|+ +|+++
T Consensus 81 ~~i~~~~~~~----~~~P~~~~~lvaG~d--~~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~ 154 (188)
T cd03764 81 TLLSNILNSS----KYFPYIVQLLIGGVD--EEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKK 154 (188)
T ss_pred HHHHHHHHhc----CCCCcEEEEEEEEEe--CCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHH
Confidence 9999999775 479999999999999 4789999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEcc
Q 025729 189 LAIRALLEVVES---GGKNIEVAVMTREHGLRQLE 220 (249)
Q Consensus 189 la~~al~~~~~~---~~~~iev~ii~~~g~~~~l~ 220 (249)
++++||+.+.++ ++++++|++++++| +++++
T Consensus 155 l~~~~l~~~~~rd~~~~~~i~i~iv~~~g-~~~~~ 188 (188)
T cd03764 155 LAIRAIKSAIERDSASGDGIDVVVITKDG-YKELE 188 (188)
T ss_pred HHHHHHHHHHhhcCCCCCcEEEEEECCCC-eEeCC
Confidence 999999999875 57899999999998 87763
No 32
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3e-41 Score=279.74 Aligned_cols=183 Identities=24% Similarity=0.309 Sum_probs=170.6
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHHH
Q 025729 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+|+||||||+|++.++ .++..++.+|||+|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 5899999999999999999998 466777899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025729 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (249)
Q Consensus 110 ~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s-~eai~ 188 (249)
+++++.+|.|. .||+|++|||||| ++||+||.+||.|++.+++++|+|+++.+++++|+++|+++|| +||++
T Consensus 81 ~~l~~~l~~~~-----~p~~v~~ivaG~d--~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~ 153 (189)
T cd03763 81 TMLKQHLFRYQ-----GHIGAALVLGGVD--YTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKK 153 (189)
T ss_pred HHHHHHHHHcC-----CccceeEEEEeEc--CCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHH
Confidence 99999998763 3999999999999 4689999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEccH
Q 025729 189 LAIRALLEVVES---GGKNIEVAVMTREHGLRQLEE 221 (249)
Q Consensus 189 la~~al~~~~~~---~~~~iev~ii~~~g~~~~l~~ 221 (249)
++++||+.+.++ ++.+++|++|+++| ++...|
T Consensus 154 l~~~~l~~~~~rd~~~~~~~~v~ii~~~g-~~~~~~ 188 (189)
T cd03763 154 LVCEAIEAGIFNDLGSGSNVDLCVITKDG-VEYLRN 188 (189)
T ss_pred HHHHHHHHHHHhcCcCCCceEEEEEcCCc-EEEecC
Confidence 999999999875 57789999999998 665543
No 33
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.5e-41 Score=278.39 Aligned_cols=180 Identities=19% Similarity=0.326 Sum_probs=169.8
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHHH
Q 025729 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|++.+. .++.+++.+|||+|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 5899999999999999999988 667778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025729 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (249)
Q Consensus 110 ~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s-~eai~ 188 (249)
+++++.+|.++ |||+|++||||+|+ ++||+||.+||.|++.+++++++|+|+.+++++||+.|+++|+ +||++
T Consensus 81 ~~l~~~~~~~~-----~~~~~~~ii~G~d~-~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~ 154 (188)
T cd03762 81 SLFKNLCYNYK-----EMLSAGIIVAGWDE-QNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIK 154 (188)
T ss_pred HHHHHHHHhcc-----ccceeeEEEEEEcC-CCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHH
Confidence 99999997654 78999999999996 6789999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEEcCCCEE
Q 025729 189 LAIRALLEVVES---GGKNIEVAVMTREHGLR 217 (249)
Q Consensus 189 la~~al~~~~~~---~~~~iev~ii~~~g~~~ 217 (249)
++++||..+.++ ++++++|++|+++| ++
T Consensus 155 l~~~al~~~~~rd~~~~~~~~i~~i~~~g-~~ 185 (188)
T cd03762 155 FVKNALSLAMSRDGSSGGVIRLVIITKDG-VE 185 (188)
T ss_pred HHHHHHHHHHHhccccCCCEEEEEECCCC-EE
Confidence 999999999985 57899999999998 44
No 34
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=5.1e-41 Score=277.79 Aligned_cols=183 Identities=40% Similarity=0.676 Sum_probs=172.3
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccCcc--cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcC
Q 025729 27 VRKGNAAVGVRGTDIVVLGVEKKSAV--KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVT 104 (249)
Q Consensus 27 ~~~G~t~igi~~~dgVvla~d~~~~~--~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 104 (249)
+++|+|+|||+++||||||+|++.+. .+..+.+.+|||+|++|++++++|..+|++.+.++++.++..|++.++.+++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 57899999999999999999999984 4445545799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecc-eeeeecCCchHHHHHHHhhhccCCc
Q 025729 105 VEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW-KANATGRNSNSIREFLEKNYKETSG 183 (249)
Q Consensus 105 ~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~-~~~aiG~g~~~~~~~Le~~~~~~~s 183 (249)
++.+++.++..++.++++.++||+++++|++|||+ +++|+||.+||+|++.++ +++|+|+|+.+++++|++.|+++|+
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~-~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~ 159 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDE-DGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLS 159 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEET-TTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSS
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeecc-ccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCC
Confidence 99999999999999999999999999999999996 677999999999999999 6999999999999999999999999
Q ss_pred -HHHHHHHHHHHHHHHhc---CCCcEEEEEE
Q 025729 184 -QETVKLAIRALLEVVES---GGKNIEVAVM 210 (249)
Q Consensus 184 -~eai~la~~al~~~~~~---~~~~iev~ii 210 (249)
+||++++++||+.+.++ ++++++|++|
T Consensus 160 ~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 160 LEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 99999999999999874 5789999986
No 35
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-40 Score=274.86 Aligned_cols=182 Identities=27% Similarity=0.412 Sum_probs=171.0
Q ss_pred CcEEEEEeCCEEEEEEeccCcccccc-cCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHHH
Q 025729 31 NAAVGVRGTDIVVLGVEKKSAVKLQD-SRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|++.++++.. +++.+|||+|+++++++++|+.+|++.+.++++.++..|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999986554 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025729 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (249)
Q Consensus 110 ~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s-~eai~ 188 (249)
+++++.++.+++ |||++++||||+|+ +++|+||.+||.|++.+++++++|+++.+++++|++.|+++|| +||++
T Consensus 81 ~~l~~~~~~~~~----~P~~~~~iv~G~d~-~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~ 155 (189)
T cd01912 81 NLLSNILYSYRG----FPYYVSLIVGGVDK-GGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVE 155 (189)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEcC-CCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHH
Confidence 999999987765 89999999999996 5899999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEEcCCCEEE
Q 025729 189 LAIRALLEVVES---GGKNIEVAVMTREHGLRQ 218 (249)
Q Consensus 189 la~~al~~~~~~---~~~~iev~ii~~~g~~~~ 218 (249)
++++||..+.++ ++.+++|++|+++| ++.
T Consensus 156 ~~~~~l~~~~~~d~~~~~~~~v~vi~~~g-~~~ 187 (189)
T cd01912 156 LVKKAIDSAIERDLSSGGGVDVAVITKDG-VEE 187 (189)
T ss_pred HHHHHHHHHHHhcCccCCcEEEEEECCCC-EEE
Confidence 999999998875 57899999999998 543
No 36
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=2.3e-39 Score=266.18 Aligned_cols=177 Identities=44% Similarity=0.665 Sum_probs=167.1
Q ss_pred CcEEEEEeCCEEEEEEeccCcccccc-cCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHHH
Q 025729 31 NAAVGVRGTDIVVLGVEKKSAVKLQD-SRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|++.++.+.. +++.+|||.|+++++++++|..+|++.+.+.++.++..|++.++++++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 58999999999999999999886544 77899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025729 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (249)
Q Consensus 110 ~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s-~eai~ 188 (249)
+++++.+|.+++. .|||++++|++|+|+ +++|+||.+||.|++.+++++|+|+++.+++++|++.|+++|| +|+++
T Consensus 81 ~~l~~~~~~~~~~--~~p~~~~~lv~G~d~-~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~ 157 (182)
T cd01906 81 KLLANLLYEYTQS--LRPLGVSLLVAGVDE-EGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIE 157 (182)
T ss_pred HHHHHHHHHhCCC--ccChheEEEEEEEeC-CCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHH
Confidence 9999999999876 899999999999995 5899999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEE
Q 025729 189 LAIRALLEVVES---GGKNIEVAVM 210 (249)
Q Consensus 189 la~~al~~~~~~---~~~~iev~ii 210 (249)
++++||..+.++ .+.+++|+++
T Consensus 158 l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 158 LALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHHcccCCCCCCEEEEEC
Confidence 999999999875 4678999875
No 37
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-36 Score=237.69 Aligned_cols=187 Identities=21% Similarity=0.310 Sum_probs=175.3
Q ss_pred CCcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHH
Q 025729 30 GNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYI 108 (249)
Q Consensus 30 G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (249)
+.+++||++.|+|++|+|+.... .++.+.+.+|++.+++++.|+++|..+|+.++.+++.+.++.|+.++|.++||+..
T Consensus 1 Me~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~a 80 (200)
T KOG0177|consen 1 METLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAA 80 (200)
T ss_pred CceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHH
Confidence 35789999999999999999877 45678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhccCCc-HHHH
Q 025729 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETV 187 (249)
Q Consensus 109 a~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s-~eai 187 (249)
|+++++.+..+.+ ..+||-|++|+||+|+ +.||.||.+|..|+..+.++++.|.++.++.++|++.|+|+|| +||+
T Consensus 81 ahFtR~~La~~LR--sr~~yqV~~LvaGYd~-~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~ 157 (200)
T KOG0177|consen 81 AHFTRRELAESLR--SRTPYQVNILVAGYDP-EEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEAL 157 (200)
T ss_pred HHHHHHHHHHHHh--cCCCceEEEEEeccCC-CCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHH
Confidence 9999999999986 3589999999999998 6779999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEcc
Q 025729 188 KLAIRALLEVVES---GGKNIEVAVMTREHGLRQLE 220 (249)
Q Consensus 188 ~la~~al~~~~~~---~~~~iev~ii~~~g~~~~l~ 220 (249)
++..+|+.+..++ +..++.|.+|+|+| .+.++
T Consensus 158 ~lmkKCv~El~kRlvin~~~f~v~IVdkdG-ir~~~ 192 (200)
T KOG0177|consen 158 DLMKKCVLELKKRLVINLPGFIVKIVDKDG-IRKLD 192 (200)
T ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEcCCC-ceecc
Confidence 9999999999875 78899999999999 66554
No 38
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-33 Score=229.61 Aligned_cols=203 Identities=18% Similarity=0.305 Sum_probs=187.5
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCH
Q 025729 27 VRKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTV 105 (249)
Q Consensus 27 ~~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 105 (249)
..+|||.+|++++.|||+|+|+|.+. .++.+...+||.+|+++..-+++|-.+|++++-+.+.++|..|.+++++.|+|
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSV 147 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISV 147 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceeh
Confidence 35899999999999999999999998 67888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhccCCc-H
Q 025729 106 EYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-Q 184 (249)
Q Consensus 106 ~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s-~ 184 (249)
...++.|+++++.|... -+.+..+|+||| +.||.||.+|..|+-..-+-.++|+|+.+|+.+|+..|++||| +
T Consensus 148 saASKllsN~~y~YkGm----GLsmGtMi~G~D--k~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~e 221 (285)
T KOG0175|consen 148 SAASKLLSNMVYQYKGM----GLSMGTMIAGWD--KKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDE 221 (285)
T ss_pred HHHHHHHHHHHhhccCc----chhheeeEeecc--CCCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHH
Confidence 99999999999887643 277888999999 7899999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEccHHHHHHHHHHHHHHHH
Q 025729 185 ETVKLAIRALLEVVES---GGKNIEVAVMTREHGLRQLEEAEIDAIVSEIEAEKA 236 (249)
Q Consensus 185 eai~la~~al~~~~~~---~~~~iev~ii~~~g~~~~l~~~ei~~~~~~i~~~~~ 236 (249)
||.+|+++|+..+..+ ++..+.+..|+.+| |..+++.++.++.....+...
T Consensus 222 EA~~L~rrAI~hAThRDaySGG~vnlyHv~edG-W~~v~~~Dv~~L~~~~~e~~~ 275 (285)
T KOG0175|consen 222 EAYDLARRAIYHATHRDAYSGGVVNLYHVKEDG-WVKVSNTDVSELHYHYYEVAP 275 (285)
T ss_pred HHHHHHHHHHHHHHhcccccCceEEEEEECCcc-ceecCCccHHHHHHHHHHhcC
Confidence 9999999999998765 46789999999998 999999999999766654333
No 39
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-32 Score=228.06 Aligned_cols=183 Identities=24% Similarity=0.343 Sum_probs=169.9
Q ss_pred HHHhcCCcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCc
Q 025729 25 EAVRKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPV 103 (249)
Q Consensus 25 ~a~~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 103 (249)
++.+.|+|++|+.++||||+++|+|.+. ..+..++.+||+.|.++|+||.+|..+|...+.+.+..+++.|+++.++.+
T Consensus 32 ~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~ 111 (271)
T KOG0173|consen 32 KATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKP 111 (271)
T ss_pred cccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCC
Confidence 3556899999999999999999999998 566778999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhccCCc
Q 025729 104 TVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG 183 (249)
Q Consensus 104 ~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s 183 (249)
++-..-+++.+.+.+|.. ..|+.+|++|+| ..||+||.+.|.|+....+|.++|+|+..++++||.+|+++|+
T Consensus 112 rVv~A~~mlkQ~LFrYqG-----~IgA~LiiGGvD--~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt 184 (271)
T KOG0173|consen 112 RVVTALRMLKQHLFRYQG-----HIGAALILGGVD--PTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLT 184 (271)
T ss_pred ceeeHHHHHHHHHHHhcC-----cccceeEEcccc--CCCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcccC
Confidence 999988999999988764 589999999999 6899999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCC
Q 025729 184 -QETVKLAIRALLEVVES---GGKNIEVAVMTREH 214 (249)
Q Consensus 184 -~eai~la~~al~~~~~~---~~~~iev~ii~~~g 214 (249)
|||++|+.+|+...+.- ++.|+++++|++.+
T Consensus 185 ~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~ 219 (271)
T KOG0173|consen 185 KEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKG 219 (271)
T ss_pred HHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCC
Confidence 99999999999988743 57899999999654
No 40
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-32 Score=217.44 Aligned_cols=182 Identities=20% Similarity=0.396 Sum_probs=169.8
Q ss_pred hcCCcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHH
Q 025729 28 RKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVE 106 (249)
Q Consensus 28 ~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 106 (249)
.+|+|+|||++.|+.|+|+|+|.++ ..+.++..+|||+++|+++++.||+.+|+..|...++.....|++.++..|++.
T Consensus 27 ~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~~ 106 (235)
T KOG0179|consen 27 DNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSIH 106 (235)
T ss_pred cCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccHH
Confidence 6899999999999999999999988 456789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhc-------
Q 025729 107 YITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYK------- 179 (249)
Q Consensus 107 ~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~------- 179 (249)
.+|++|+.++ |. .++.||.+..+++|+|+ ++++.+|..||.|++.+..+.|.|+++.+++++|++...
T Consensus 107 s~A~lls~~L--Y~--kRFFPYYv~~ilaGiDe-eGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e 181 (235)
T KOG0179|consen 107 SAAQLLSTIL--YS--KRFFPYYVFNILAGIDE-EGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLE 181 (235)
T ss_pred HHHHHHHHHH--hh--cccccceeeeeeecccc-cCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcccc
Confidence 9999999999 44 36899999999999998 789999999999999999999999999999999998643
Q ss_pred ----cCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCC
Q 025729 180 ----ETSG-QETVKLAIRALLEVVES---GGKNIEVAVMTREH 214 (249)
Q Consensus 180 ----~~~s-~eai~la~~al~~~~~~---~~~~iev~ii~~~g 214 (249)
..++ ++|++++..++..+.++ .++.++|+|++++|
T Consensus 182 ~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~g 224 (235)
T KOG0179|consen 182 NAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDG 224 (235)
T ss_pred cCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCC
Confidence 3478 99999999999999876 58999999999998
No 41
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=9.9e-32 Score=214.68 Aligned_cols=196 Identities=17% Similarity=0.285 Sum_probs=178.6
Q ss_pred HHhcCCcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcC
Q 025729 26 AVRKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVT 104 (249)
Q Consensus 26 a~~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 104 (249)
.+..|+|++|+++++||||++|+|.+. ..+..+-.+|+.+|.|+|+||-||..+|.|.+.+.++..+..|..+++.+++
T Consensus 15 evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~ 94 (224)
T KOG0174|consen 15 EVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPL 94 (224)
T ss_pred ccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCch
Confidence 478999999999999999999999988 5667788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhccCCc-
Q 025729 105 VEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG- 183 (249)
Q Consensus 105 ~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s- 183 (249)
+...|+..+++.++|.. -+.+.+||||||+ ..|.++|.+.-.|...+-+++.-|+||.+++.+++..|+++|+
T Consensus 95 v~~aA~l~r~~~Y~~re-----~L~AgliVAGwD~-~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~ 168 (224)
T KOG0174|consen 95 VHTAASLFREICYNYRE-----MLSAGLIVAGWDE-KEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTL 168 (224)
T ss_pred HHHHHHHHHHHHHhCHH-----hhhcceEEeeccc-ccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCH
Confidence 99999999999987653 3789999999998 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCC-EEEccHHHHHHH
Q 025729 184 QETVKLAIRALLEVVES---GGKNIEVAVMTREHG-LRQLEEAEIDAI 227 (249)
Q Consensus 184 ~eai~la~~al~~~~~~---~~~~iev~ii~~~g~-~~~l~~~ei~~~ 227 (249)
||++.+..+|+..++.+ ++..|.+.+|+++|. .+.+.++++.++
T Consensus 169 EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~~~ 216 (224)
T KOG0174|consen 169 EECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLGQF 216 (224)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCccccc
Confidence 99999999999999876 467899999999983 235677766544
No 42
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.2e-31 Score=218.31 Aligned_cols=211 Identities=18% Similarity=0.247 Sum_probs=183.9
Q ss_pred CcccCCCCcchhhhhHHH--------HHhcCCcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccH
Q 025729 8 ITVFSPDGHLFQVEYALE--------AVRKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLK 78 (249)
Q Consensus 8 ~~~fspeG~l~Qveya~~--------a~~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~ 78 (249)
..+|.|.|.. ++-|-. ++-+||++||++++||||+|+|+..++ +|...++.+|+++++||+.+++||..
T Consensus 13 ~~~f~~~~~~--m~~a~~~~~qrt~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdi 90 (256)
T KOG0185|consen 13 PGTFYPSGSL--MENAGDYPIQRTLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDI 90 (256)
T ss_pred CCcCcCccch--hhhccCCCcccccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccH
Confidence 4678888653 333333 445799999999999999999999998 78888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh-hhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceec
Q 025729 79 ADARVLVNRARIECQSHR-LTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSA 157 (249)
Q Consensus 79 ~D~~~l~~~~~~~~~~~~-~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~ 157 (249)
+|.|.|.+.+.....+.. +-.|+.+.|+.+.++|.+.+ |.+++.+.|++.+++|+|+|. .+.|+|-.+|--|...+
T Consensus 91 sD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvl--Y~rRsKmnPlwntlvVgGv~~-~g~~~lg~V~~~G~~Y~ 167 (256)
T KOG0185|consen 91 SDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVL--YARRSKMNPLWNTLVVGGVDN-TGEPFLGYVDLLGVAYE 167 (256)
T ss_pred HHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHH--HHhhhccCchhhheeEeeecC-CCCeeEEEEeecccccc
Confidence 999999999987766643 44568999999999999999 678899999999999999996 68899999999999999
Q ss_pred ceeeeecCCchHHHHHHHhhhc---cCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEccHHHH
Q 025729 158 WKANATGRNSNSIREFLEKNYK---ETSG-QETVKLAIRALLEVVES---GGKNIEVAVMTREHGLRQLEEAEI 224 (249)
Q Consensus 158 ~~~~aiG~g~~~~~~~Le~~~~---~~~s-~eai~la~~al~~~~~~---~~~~iev~ii~~~g~~~~l~~~ei 224 (249)
.+..|+|.|..++.++|++.|. ++++ +||.+++.+||+..+.+ +..+++|++|+++| +..-.|..|
T Consensus 168 ~~~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eG-v~i~~p~qv 240 (256)
T KOG0185|consen 168 SPVVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEG-VTISKPYQV 240 (256)
T ss_pred CchhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccc-eEecCceee
Confidence 9999999999999999999998 5678 99999999999999876 46689999999988 655555444
No 43
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.97 E-value=2.3e-29 Score=204.65 Aligned_cols=163 Identities=16% Similarity=0.148 Sum_probs=138.3
Q ss_pred CCcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEe-cCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHH
Q 025729 30 GNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSL-DNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEY 107 (249)
Q Consensus 30 G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~ 107 (249)
|+|+|||+++||||||+|+|.+. .++.+++.+||++| ++|++|++||..+|++.|.+.++.+++.|+..+ ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~~~-----~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQGNL-----LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccCcc-----HHH
Confidence 78999999999999999999987 57788899999999 999999999999999999999999999998322 344
Q ss_pred HHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecc--eeeeecCCchHHHHHHHhhhc-cCCcH
Q 025729 108 ITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW--KANATGRNSNSIREFLEKNYK-ETSGQ 184 (249)
Q Consensus 108 la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~--~~~aiG~g~~~~~~~Le~~~~-~~~s~ 184 (249)
.++.+..+ ..+...+|+.+.+|++ |+ |+||.+||.|++.+. +++++|+|+.++.++|++.|+ ++|
T Consensus 76 ~a~l~~~l----~~~~~~~~l~~~~lv~--d~----~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m-- 143 (172)
T PRK05456 76 AVELAKDW----RTDRYLRRLEAMLIVA--DK----EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL-- 143 (172)
T ss_pred HHHHHHHH----HhccCCCccEEEEEEE--cC----CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC--
Confidence 44433322 1222347888999984 52 699999999999766 799999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHhc---CCCcEEEEE
Q 025729 185 ETVKLAIRALLEVVES---GGKNIEVAV 209 (249)
Q Consensus 185 eai~la~~al~~~~~~---~~~~iev~i 209 (249)
||++++++|+..+..+ ++++|+|-.
T Consensus 144 eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 144 SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 9999999999999886 467787754
No 44
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=1.1e-28 Score=197.04 Aligned_cols=160 Identities=39% Similarity=0.518 Sum_probs=152.2
Q ss_pred CcEEEEEeCCEEEEEEeccCcccccc-cCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHHH
Q 025729 31 NAAVGVRGTDIVVLGVEKKSAVKLQD-SRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||+|+|++.+..+.. ..+..|++.++++++++++|..+|++.+.++++.++..|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 57999999999999999999886554 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecc-eeeeecCCchHHHHHHHhhhccCCc-HHHH
Q 025729 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW-KANATGRNSNSIREFLEKNYKETSG-QETV 187 (249)
Q Consensus 110 ~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~-~~~aiG~g~~~~~~~Le~~~~~~~s-~eai 187 (249)
+.+++.++.+++ .||+++++|++|+| +++|+||.+||.|++.++ +++++|.++.++.++|++.|+++|+ ++++
T Consensus 81 ~~~~~~~~~~~~---~~p~~~~~iiag~~--~~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~ 155 (164)
T cd01901 81 KELAKLLQVYTQ---GRPFGVNLIVAGVD--EGGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAV 155 (164)
T ss_pred HHHHHHHHHhcC---CCCcceEEEEEEEc--CCCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999887 79999999999999 478999999999999999 9999999999999999999999999 9999
Q ss_pred HHHHHHHH
Q 025729 188 KLAIRALL 195 (249)
Q Consensus 188 ~la~~al~ 195 (249)
+++.+||.
T Consensus 156 ~~~~~~l~ 163 (164)
T cd01901 156 ELALKALK 163 (164)
T ss_pred HHHHHHHh
Confidence 99999985
No 45
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.96 E-value=3.8e-28 Score=196.31 Aligned_cols=161 Identities=16% Similarity=0.077 Sum_probs=133.6
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecC-cEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHH
Q 025729 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDN-HIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYI 108 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (249)
+|+|||+++||||||+|+|.+. .++.+++.+||++|++ |++|+++|..+|++.|.++++.+++.|+.+.++ ..
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 6899999999999999999988 5778899999999999 999999999999999999999999999988774 33
Q ss_pred HHHHHHHHHHhhccCCCCcce-eeeEEEEeeCCCCcceEEEECCCCceecce--eeeecCCchHHHHHHHhhhccC-CcH
Q 025729 109 TRYIAGLQQKYTQSGGVRPFG-LSTLIVGFDPYTGVPSLYQTDPSGTFSAWK--ANATGRNSNSIREFLEKNYKET-SGQ 184 (249)
Q Consensus 109 a~~l~~~~~~~~~~~~~rP~~-v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~--~~aiG~g~~~~~~~Le~~~~~~-~s~ 184 (249)
++.+..++ .| ..+|+. +.++++++ ++||.+||.|.+.+.+ +.++|+|+.++..+||.+|+++ ||
T Consensus 76 a~l~~~l~-~~----~~~~~l~a~~iv~~~------~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms- 143 (171)
T cd01913 76 VELAKDWR-TD----RYLRRLEAMLIVADK------EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS- 143 (171)
T ss_pred HHHHHHHH-hc----cCcCceEEEEEEeCC------CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC-
Confidence 34333332 11 334555 55555433 3899999999999984 9999999999999999999995 98
Q ss_pred HHHHHHHHHHHHHHhc---CCCcEEEEE
Q 025729 185 ETVKLAIRALLEVVES---GGKNIEVAV 209 (249)
Q Consensus 185 eai~la~~al~~~~~~---~~~~iev~i 209 (249)
+.++|++|++.+.++ ++++|+|-.
T Consensus 144 -~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 144 -AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred -HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 339999999999876 467787754
No 46
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.96 E-value=1.2e-27 Score=193.36 Aligned_cols=162 Identities=15% Similarity=0.126 Sum_probs=131.9
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEe-cCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHH
Q 025729 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSL-DNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYI 108 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (249)
+|+|||+++||||||+|+|++. .++.+++.+||++| ++|++|+++|..+|++.|.++++.+++.|+... .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 6899999999999999999987 57788999999999 599999999999999999999999999998743 2444
Q ss_pred HHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecc--eeeeecCCchHHHHHHHhhhc-cCCcHH
Q 025729 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW--KANATGRNSNSIREFLEKNYK-ETSGQE 185 (249)
Q Consensus 109 a~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~--~~~aiG~g~~~~~~~Le~~~~-~~~s~e 185 (249)
++.+++ +..+...+.+.+.++++|+ ++||.+||.|.+.+. +++++|+|+.++..+||..|+ ++| +
T Consensus 76 a~l~~~----~~~~~~~~~l~a~~iv~~~------~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~--s 143 (171)
T TIGR03692 76 VELAKD----WRTDRYLRRLEAMLIVADK------ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDL--S 143 (171)
T ss_pred HHHHHH----HhhcccccccEEEEEEEcC------CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCC--C
Confidence 444444 2112222334466666543 389999999999996 699999999999999999995 445 4
Q ss_pred HHHHHHHHHHHHHhc---CCCcEEEEE
Q 025729 186 TVKLAIRALLEVVES---GGKNIEVAV 209 (249)
Q Consensus 186 ai~la~~al~~~~~~---~~~~iev~i 209 (249)
|+++|++++..+.++ ++++|+|-.
T Consensus 144 a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 144 AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 999999999999876 467787754
No 47
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.2e-27 Score=188.00 Aligned_cols=182 Identities=21% Similarity=0.313 Sum_probs=169.6
Q ss_pred hcCCcEEEEEeCCEEEEEEeccCccc-ccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHH
Q 025729 28 RKGNAAVGVRGTDIVVLGVEKKSAVK-LQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVE 106 (249)
Q Consensus 28 ~~G~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 106 (249)
-+|+++||++++|||.+|+|.|.... ....++.+|||+++|+++++.+|+..|++++.++++..-+.|+++.+++|-|+
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 37999999999999999999999873 44677899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceec-ceeeeecCCchHHHHHHHhhhccCCc-H
Q 025729 107 YITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSA-WKANATGRNSNSIREFLEKNYKETSG-Q 184 (249)
Q Consensus 107 ~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~-~~~~aiG~g~~~~~~~Le~~~~~~~s-~ 184 (249)
.++.++|.++++. ++-||.+..+|||+|+ +++|+|...|.-|+... ..+++.|.++...+..+|..|+|||+ +
T Consensus 86 ~~s~mvS~~lYek----RfgpYf~~PvVAGl~~-~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd 160 (204)
T KOG0180|consen 86 TFSSMVSSLLYEK----RFGPYFTEPVVAGLDD-DNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPD 160 (204)
T ss_pred HHHHHHHHHHHHh----hcCCcccceeEeccCC-CCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHH
Confidence 9999999999653 4679999999999998 89999999999999886 58999999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHhc---CCCcEEEEEEEcCC
Q 025729 185 ETVKLAIRALLEVVES---GGKNIEVAVMTREH 214 (249)
Q Consensus 185 eai~la~~al~~~~~~---~~~~iev~ii~~~g 214 (249)
++.+.+.++|.+++++ ++....|.+|+||.
T Consensus 161 ~LFetisQa~Lna~DRDalSGwGa~vyiI~kdk 193 (204)
T KOG0180|consen 161 ELFETISQALLNAVDRDALSGWGAVVYIITKDK 193 (204)
T ss_pred HHHHHHHHHHHhHhhhhhhccCCeEEEEEccch
Confidence 9999999999999987 47789999999986
No 48
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=99.55 E-value=2.3e-15 Score=80.12 Aligned_cols=23 Identities=78% Similarity=1.314 Sum_probs=22.3
Q ss_pred CCCCCcccCCCCcchhhhhHHHH
Q 025729 4 YDRAITVFSPDGHLFQVEYALEA 26 (249)
Q Consensus 4 yd~~~~~fspeG~l~Qveya~~a 26 (249)
||+++|+|||+|||+|||||++|
T Consensus 1 YD~~~t~FSp~Grl~QVEYA~~A 23 (23)
T PF10584_consen 1 YDRSITTFSPDGRLFQVEYAMKA 23 (23)
T ss_dssp TSSSTTSBBTTSSBHHHHHHHHH
T ss_pred CCCCceeECCCCeEEeeEeeecC
Confidence 89999999999999999999997
No 49
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=5e-13 Score=104.80 Aligned_cols=166 Identities=17% Similarity=0.129 Sum_probs=129.5
Q ss_pred cCCcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecC-cEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHH
Q 025729 29 KGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDN-HIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVE 106 (249)
Q Consensus 29 ~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 106 (249)
++||+++++-++-|++++|.+++. ..+.+.+.+|+.+|.+ +++.+++|..+|+.++.+.+..+++.|.-
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g--------- 73 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQG--------- 73 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccC---------
Confidence 689999999999999999999987 5666777777766655 89999999999999999999999998872
Q ss_pred HHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecc--eeeeecCCchHHHHHHHhhhcc-CCc
Q 025729 107 YITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW--KANATGRNSNSIREFLEKNYKE-TSG 183 (249)
Q Consensus 107 ~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~--~~~aiG~g~~~~~~~Le~~~~~-~~s 183 (249)
.|.+..-++.+.|.....+|.+.+-++++--+ .+|.+...|.+.+. ..++||||..++.......+.. ++
T Consensus 74 ~L~raavelaKdwr~Dk~lr~LEAmllVad~~------~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~l- 146 (178)
T COG5405 74 DLFRAAVELAKDWRTDKYLRKLEAMLLVADKT------HILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTEL- 146 (178)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHhhheeEeCCC------cEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCC-
Confidence 34445555666666666678888888887433 48999999998863 5999999999999998887753 55
Q ss_pred HHHHHHHHHHHHHHHhc---CCCcEEEEEEE
Q 025729 184 QETVKLAIRALLEVVES---GGKNIEVAVMT 211 (249)
Q Consensus 184 ~eai~la~~al~~~~~~---~~~~iev~ii~ 211 (249)
.|-+++.++|..+.+. ++++|.|..+.
T Consensus 147 -sA~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 147 -SAREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred -CHHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 4555667777777653 56677766554
No 50
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.3e-10 Score=94.53 Aligned_cols=205 Identities=16% Similarity=0.182 Sum_probs=145.5
Q ss_pred CCcEEEEEeCCEEEEEEeccCcccccccCcccceEEe---cCc-EEEEEeccHHHHHHHHHHHHHHHHHh--hhhcCCCc
Q 025729 30 GNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSL---DNH-IALACAGLKADARVLVNRARIECQSH--RLTVEDPV 103 (249)
Q Consensus 30 G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i---~~~-i~~~~sG~~~D~~~l~~~~~~~~~~~--~~~~~~~i 103 (249)
++.|||++...|.|+++|+|.+..+-.....+|+|.. ++. ++++.+|+.+-.|.+++.+....+.. .... .-.
T Consensus 1 MTYCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~-n~~ 79 (255)
T COG3484 1 MTYCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLL-NIP 79 (255)
T ss_pred CceEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhh-cch
Confidence 4789999999999999999987654333456777554 233 56677999999999999887666421 1111 123
Q ss_pred CHHHHHHHHHHHHHHhh-ccC-----CCCcceeeeEEEEeeCCCCcceEEEECCCCceec----ceeeeecCCchHHHHH
Q 025729 104 TVEYITRYIAGLQQKYT-QSG-----GVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSA----WKANATGRNSNSIREF 173 (249)
Q Consensus 104 ~~~~la~~l~~~~~~~~-~~~-----~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~----~~~~aiG~g~~~~~~~ 173 (249)
+....+..+.....+-. +.+ .---|.|++|++|.-. .+-|.||.|.|.|++.+ ..+.-+|. +.+.+++
T Consensus 80 sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~-G~pp~Ly~IYpqGNFIqaT~etpf~QiGE-tKYGKPi 157 (255)
T COG3484 80 SMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIK-GEPPRLYLIYPQGNFIQATPETPFLQIGE-TKYGKPI 157 (255)
T ss_pred hHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceec-CCCceeEEEccCCCeeecCCCCceeEccc-cccCchh
Confidence 44455555554442221 111 1134899999999974 44478999999999985 36777887 6788999
Q ss_pred HHhhhccCCc-HHHHHHHHHHHHHHHhcC---CCcEEEEEEEcCCCEE-----EccHHHHHHHHHHHH-HHHHHHHH
Q 025729 174 LEKNYKETSG-QETVKLAIRALLEVVESG---GKNIEVAVMTREHGLR-----QLEEAEIDAIVSEIE-AEKAAAEA 240 (249)
Q Consensus 174 Le~~~~~~~s-~eai~la~~al~~~~~~~---~~~iev~ii~~~g~~~-----~l~~~ei~~~~~~i~-~~~~~~~~ 240 (249)
|++.+.-+++ +++.++++-++...++++ +-++++-++.+|. |+ ++..+ ++++.+|+ .|...-.+
T Consensus 158 ldR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds-~~v~~~~ri~ed--d~Y~a~ir~~W~~~lrq 231 (255)
T COG3484 158 LDRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADS-FSVRHTLRIRED--DPYFAKIRSLWSSYLRQ 231 (255)
T ss_pred hhhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccc-eeeeeeeEeccC--ChHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999998764 6689999999885 33 34433 45666666 45554333
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=94.25 E-value=1.1 Score=36.82 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=37.0
Q ss_pred hHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcC
Q 025729 168 NSIREFLEKNYKETSG-QETVKLAIRALLEVVES---GGKNIEVAVMTRE 213 (249)
Q Consensus 168 ~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~~---~~~~iev~ii~~~ 213 (249)
+.+...|.+.|++.|+ +++.++...+|..+... -+..+++...++.
T Consensus 131 ~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 131 EIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 6677888999999999 99999999999998543 2557888777653
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=79.08 E-value=41 Score=28.98 Aligned_cols=58 Identities=19% Similarity=0.284 Sum_probs=39.2
Q ss_pred hHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCC-CEEEccHHHHH
Q 025729 168 NSIREFLEKNYKETSG-QETVKLAIRALLEVVES---GGKNIEVAVMTREH-GLRQLEEAEID 225 (249)
Q Consensus 168 ~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~~---~~~~iev~ii~~~g-~~~~l~~~ei~ 225 (249)
+.+..+|..+|.+.++ +++.++...+|..+..- -+..+++..++.+- ++.+|-+.+|+
T Consensus 132 e~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~~~rl~kkDie 194 (293)
T COG4079 132 EVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDPVLRLVKKDIE 194 (293)
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCHHHHHHHHHHH
Confidence 4566677788888888 88888888887776532 35678888887632 25555555454
No 53
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=71.34 E-value=7.5 Score=30.15 Aligned_cols=43 Identities=21% Similarity=0.247 Sum_probs=39.0
Q ss_pred EEECCCCceecceeeeecCCchHHHHHHHhhhccCCc-HHHHHH
Q 025729 147 YQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVKL 189 (249)
Q Consensus 147 y~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s-~eai~l 189 (249)
..+|-+|.+...++-..|.|+..+.+-+-..|-..++ +|+.++
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI 114 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI 114 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence 4578899999999999999999999999999999999 998765
No 54
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=50.59 E-value=21 Score=23.61 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=28.3
Q ss_pred cccCC-CCcchhhhhHHHHHhcCCcEEEEEeCC
Q 025729 9 TVFSP-DGHLFQVEYALEAVRKGNAAVGVRGTD 40 (249)
Q Consensus 9 ~~fsp-eG~l~Qveya~~a~~~G~t~igi~~~d 40 (249)
|.||+ +|.+.--+|...|..+|-..|||.=.+
T Consensus 6 t~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 6 SDYSLLDGALSPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred cCCccccccCCHHHHHHHHHHcCCCEEEEeeCC
Confidence 56888 999999999999999999999988776
No 55
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=48.97 E-value=28 Score=21.98 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=27.8
Q ss_pred EEEECCCCceecceeeeecCCchHHHHHHHhhh
Q 025729 146 LYQTDPSGTFSAWKANATGRNSNSIREFLEKNY 178 (249)
Q Consensus 146 Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~ 178 (249)
-|.|+|+|.+...--...|..+..+...|++..
T Consensus 2 ~~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 2 EFTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 378999999988877888999888888888765
No 56
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=45.48 E-value=26 Score=29.68 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=34.4
Q ss_pred CCCCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCC
Q 025729 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTD 40 (249)
Q Consensus 1 ~~~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~d 40 (249)
||-||..+.+ +|+|..---|++.+|+..|=..|||....
T Consensus 1 ~m~~DlHvHt-~~d~~~~~~e~i~~A~~~Gl~~i~itdH~ 39 (237)
T PRK00912 1 MKFYDLNVHA-VPDGYDTVLRLISEASHLGYSGIALSNHS 39 (237)
T ss_pred CCceEeccCC-CCCCcchHHHHHHHHHHCCCCEEEEecCc
Confidence 7889999998 58899888999999999999999997653
No 57
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=45.05 E-value=13 Score=23.19 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=24.5
Q ss_pred eecCCchHHHHHHHhhh-ccCCc-HHHHHHHHHH
Q 025729 162 ATGRNSNSIREFLEKNY-KETSG-QETVKLAIRA 193 (249)
Q Consensus 162 aiG~g~~~~~~~Le~~~-~~~~s-~eai~la~~a 193 (249)
+.|.....+...+.+.. .++++ ++.++.+++.
T Consensus 12 ~LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk~ 45 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLEKPGMDVEELIKQALKL 45 (47)
T ss_dssp HTTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHCC
T ss_pred HcCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhh
Confidence 46888889999998887 78889 9988887653
No 58
>PF05681 Fumerase: Fumarate hydratase (Fumerase); InterPro: IPR004646 This entry represents various Fe-S type hydro-lyases, including the alpha subunit from both L-tartrate dehydratase (TtdA; 4.2.1.32 from EC) and class 1 fumarate hydratases (4.2.1.2 from EC), which includes both aerobic (FumA) and anaerobic (FumB) types []. A number of Fe-S cluster-containing hydro-lyases share a conserved motif, including argininosuccinate lyase, adenylosuccinate lyase, aspartase, class I fumarate hydratase (fumarase), and tartrate dehydratase (see IPR000362 from INTERPRO). Proteins in this group represent a subset of closely related proteins or modules, including the Escherichia coli tartrate dehydratase alpha chain and the N-terminal region of the class I fumarase (where the C-terminal region is homologous to the tartrate dehydratase beta chain). The activity of archaeal proteins in this group is unknown. Fumarate hydratase (also known as fumarase) is a component of the citric acid cycle. In facultative anaerobes such as E. coli, fumarase also engages in the reductive pathway from oxaloacetate to succinate during anaerobic growth. Three fumarases, FumA, FumB, and FumC, have been reported in E. coli. fumA and fumB genes are homologous and encode products of identical sizes which form thermolabile dimers of Mr 120,000. FumA and FumB are class I enzymes and are members of the iron-dependent hydrolases, which include aconitase and malate hydratase. The active FumA contains a 4Fe-4S centre, and it can be inactivated upon oxidation to give a 3Fe-4S centre [].; GO: 0016829 lyase activity
Probab=37.12 E-value=2.5e+02 Score=24.64 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=59.3
Q ss_pred cCCCcCHH-HHHHHHHHHHHHhhccCCCCccee-eeEEEEeeCCCCcceE-EEECCCCceecceeeeecCCchHHHHHHH
Q 025729 99 VEDPVTVE-YITRYIAGLQQKYTQSGGVRPFGL-STLIVGFDPYTGVPSL-YQTDPSGTFSAWKANATGRNSNSIREFLE 175 (249)
Q Consensus 99 ~~~~i~~~-~la~~l~~~~~~~~~~~~~rP~~v-~~iiaG~d~~~~gp~L-y~idp~G~~~~~~~~aiG~g~~~~~~~Le 175 (249)
.|+.+... .+-..|.+=..+-+....+||=.| ..+ -..+..++.|.+ +.--..|...+....+-|.|+.....+
T Consensus 70 ~G~~~~~~g~l~~ai~~gv~~a~~~~~LR~s~V~~pl-~r~Ntgdn~P~ii~~~~v~gd~l~i~~~~KGgGsEn~s~l-- 146 (271)
T PF05681_consen 70 IGQDVPIEGDLEEAINEGVRKAYKEGPLRPSVVSDPL-TRKNTGDNTPAIIHIEIVPGDKLEITVLPKGGGSENMSAL-- 146 (271)
T ss_pred ECCCCCcChhHHHHHHHHHHHHHhcCCCCccccCCcc-ccccCCCCCCceEEEEEcCCCEEEEEEEecCCCcccHhhh--
Confidence 34444433 444555555444444566788777 433 666655567877 444556788888999999998765554
Q ss_pred hhhccCCc-HHHHHHHHHHHHHHH
Q 025729 176 KNYKETSG-QETVKLAIRALLEVV 198 (249)
Q Consensus 176 ~~~~~~~s-~eai~la~~al~~~~ 198 (249)
+-+.|.-+ +..++.+++.+..+-
T Consensus 147 ~ml~p~~g~e~v~~fV~d~v~~ag 170 (271)
T PF05681_consen 147 KMLNPSDGIEGVKKFVLDTVKKAG 170 (271)
T ss_pred hccCccccHHHHHHHHHHHHHhcC
Confidence 33344444 666667666666554
No 59
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=35.88 E-value=22 Score=26.96 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=19.2
Q ss_pred CCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEe
Q 025729 7 AITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVE 47 (249)
Q Consensus 7 ~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d 47 (249)
.+.+|||+|.. |+++|+|.|+---|
T Consensus 71 HvHvfSpDG~~----------------lSFTYNDhVmhe~d 95 (122)
T PF12566_consen 71 HVHVFSPDGSW----------------LSFTYNDHVMHELD 95 (122)
T ss_pred cceEECCCCCE----------------EEEEecchhhcccc
Confidence 36789999975 88999999865444
No 60
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=33.29 E-value=50 Score=26.85 Aligned_cols=35 Identities=23% Similarity=0.220 Sum_probs=25.0
Q ss_pred cCCCCcch-hhhhHHHHHhcCCcEEEEEeCCEEEEE
Q 025729 11 FSPDGHLF-QVEYALEAVRKGNAAVGVRGTDIVVLG 45 (249)
Q Consensus 11 fspeG~l~-Qveya~~a~~~G~t~igi~~~dgVvla 45 (249)
+|+.|.=- =+.-..+|..+|-++||+.++||--++
T Consensus 116 ISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~ 151 (176)
T COG0279 116 ISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLA 151 (176)
T ss_pred EeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccc
Confidence 67777633 344455566799999999999986553
No 61
>PRK07328 histidinol-phosphatase; Provisional
Probab=30.49 E-value=61 Score=27.95 Aligned_cols=39 Identities=21% Similarity=0.154 Sum_probs=31.7
Q ss_pred CCCCCCCC-cccCCCCcchhhhhHHHHHhcCCcEEEEEeC
Q 025729 1 MARYDRAI-TVFSPDGHLFQVEYALEAVRKGNAAVGVRGT 39 (249)
Q Consensus 1 ~~~yd~~~-~~fspeG~l~Qveya~~a~~~G~t~igi~~~ 39 (249)
||-+|..+ |.||++|.----||+.+|+.+|=..+||.-.
T Consensus 1 ~m~~D~H~HT~~s~~~~~~~ee~v~~A~~~Gl~~i~~TdH 40 (269)
T PRK07328 1 KMLVDYHMHTPLCGHAVGTPEEYVQAARRAGLKEIGFTDH 40 (269)
T ss_pred CCceeeccCCCCCCCCCCCHHHHHHHHHHCCCCEEEEecC
Confidence 56667655 4788899877779999999999999998766
No 62
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=29.84 E-value=1.1e+02 Score=23.97 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=29.0
Q ss_pred cCCc-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcCCC
Q 025729 180 ETSG-QETVKLAIRALLEVVESGGKNIEVAVMTREHG 215 (249)
Q Consensus 180 ~~~s-~eai~la~~al~~~~~~~~~~iev~ii~~~g~ 215 (249)
+.++ +.+.+++..++.++... +.++.|.+++..|.
T Consensus 6 ~~Ls~e~a~~ii~aA~a~a~~~-g~~VtvaVVD~~G~ 41 (141)
T COG3193 6 PVLSLELANKIIAAAVAEAQQL-GVPVTVAVVDAGGH 41 (141)
T ss_pred cccCHHHHHHHHHHHHHHHHHh-CCceEEEEECCCCC
Confidence 5678 88888888888888765 77999999999884
No 63
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=29.40 E-value=67 Score=26.66 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=27.7
Q ss_pred CcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEee
Q 025729 102 PVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFD 138 (249)
Q Consensus 102 ~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d 138 (249)
.-+|+..+.-++++++.|.+.++.+.+ +++||.
T Consensus 44 ~rtP~~~a~Dl~~~i~~y~~~w~~~~v----vLiGYS 76 (192)
T PF06057_consen 44 ERTPEQTAADLARIIRHYRARWGRKRV----VLIGYS 76 (192)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhCCceE----EEEeec
Confidence 557899999999999999998876655 788886
No 64
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=28.88 E-value=2.3e+02 Score=24.72 Aligned_cols=57 Identities=16% Similarity=0.175 Sum_probs=38.7
Q ss_pred eeeecCCchHHHHHHHhh----hccCCc-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcCCCE
Q 025729 160 ANATGRNSNSIREFLEKN----YKETSG-QETVKLAIRALLEVVESGGKNIEVAVMTREHGL 216 (249)
Q Consensus 160 ~~aiG~g~~~~~~~Le~~----~~~~~s-~eai~la~~al~~~~~~~~~~iev~ii~~~g~~ 216 (249)
+.++|.|..+++..+-.. .+..++ ++|.+.+++-+.......+...-+..++++|.+
T Consensus 187 ~s~TG~GE~iir~~~A~~v~~~m~~G~~~~~A~~~~i~~~~~~~~~~~~~gg~Iavd~~G~~ 248 (263)
T cd04513 187 AAATGDGEEMMRFLPSFQAVEYMRQGMSPKEACLEAIKRIAKHFDGPDFEGAVVALNKKGEY 248 (263)
T ss_pred EEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcCCCcEEEEEEcCCCCE
Confidence 456899988888776653 345688 999888777765554323445667777887744
No 65
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=27.71 E-value=2e+02 Score=20.47 Aligned_cols=33 Identities=9% Similarity=0.072 Sum_probs=25.7
Q ss_pred CCCcEEEEEEEcCC-CEEEccHHHHHHHHHHHHH
Q 025729 201 GGKNIEVAVMTREH-GLRQLEEAEIDAIVSEIEA 233 (249)
Q Consensus 201 ~~~~iev~ii~~~g-~~~~l~~~ei~~~~~~i~~ 233 (249)
....+.+.|++.+| ++..-+.+|+++.+.=.+.
T Consensus 37 ~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~ 70 (83)
T cd06404 37 NDQPFTLKWIDEEGDPCTISSQMELEEAFRLYEL 70 (83)
T ss_pred CCCcEEEEEECCCCCceeecCHHHHHHHHHHHHh
Confidence 34589999999876 5778889999887765543
No 66
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=27.43 E-value=2.5e+02 Score=23.43 Aligned_cols=51 Identities=16% Similarity=0.311 Sum_probs=36.2
Q ss_pred cceEEEECCCCceecceeeeecCCchHHHHHHHhhhccCCcHHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEE
Q 025729 143 VPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSGQETVKLAIRALLEVVES---GGKNIEVAVMTREHGLR 217 (249)
Q Consensus 143 gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eai~la~~al~~~~~~---~~~~iev~ii~~~g~~~ 217 (249)
=|..+.+|.+|++...+ =|+++..++.|...+.- ....++++||+.+|..+
T Consensus 4 lP~~lllDtSgSM~Ge~------------------------IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~ 57 (207)
T COG4245 4 LPCYLLLDTSGSMIGEP------------------------IEALNAGLQMMIDTLKQDPYALERVELSIVTFGGPAR 57 (207)
T ss_pred CCEEEEEecCccccccc------------------------HHHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcce
Confidence 37777888888865432 26777778887777653 35689999999886444
No 67
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=27.38 E-value=1.3e+02 Score=22.49 Aligned_cols=39 Identities=13% Similarity=0.284 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCcEEEEEEEcCCCEEE-----ccHHHHHHHHHHH
Q 025729 193 ALLEVVESGGKNIEVAVMTREHGLRQ-----LEEAEIDAIVSEI 231 (249)
Q Consensus 193 al~~~~~~~~~~iev~ii~~~g~~~~-----l~~~ei~~~~~~i 231 (249)
.|...+..+...+.+..|.|||..+. ++.++|-..++++
T Consensus 68 ~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 68 ALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred HHHHHhCCCCCceEEEEEeCCCcEEEecCCCCCHHHHHHHHhCC
Confidence 34444454566799999999996662 5666666666554
No 68
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=25.48 E-value=1.6e+02 Score=21.99 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=28.4
Q ss_pred eccHHHHHHHHHHHHHHHHH--hhhhc-C---C----CcCHHHHHHHHHHHHHHhh
Q 025729 75 AGLKADARVLVNRARIECQS--HRLTV-E---D----PVTVEYITRYIAGLQQKYT 120 (249)
Q Consensus 75 sG~~~D~~~l~~~~~~~~~~--~~~~~-~---~----~i~~~~la~~l~~~~~~~~ 120 (249)
.|..-|+..+.+.++..+.. +++.+ . . .+|++.+|.++.+.+....
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~~l 98 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKEKL 98 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHHHh
Confidence 35666888877777765443 33332 0 1 1789999999999987765
No 69
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=25.46 E-value=3.2e+02 Score=27.47 Aligned_cols=96 Identities=21% Similarity=0.374 Sum_probs=56.9
Q ss_pred EEEEeccCcccccccCcccceEEecCcEE-EEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhc
Q 025729 43 VLGVEKKSAVKLQDSRMVRKIVSLDNHIA-LACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQ 121 (249)
Q Consensus 43 vla~d~~~~~~l~~~~~~~Ki~~i~~~i~-~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~ 121 (249)
||++|+.-+.. .+| ..+++|.. ....|...|--.+.....+ +..+...+. ..+..+|++-.-.
T Consensus 329 VLCSDKTGTLT------lNk-LSvdknl~ev~v~gv~~D~~~L~A~rAs-----r~en~DAID-~A~v~~L~dPKea--- 392 (942)
T KOG0205|consen 329 VLCSDKTGTLT------LNK-LSVDKNLIEVFVKGVDKDDVLLTAARAS-----RKENQDAID-AAIVGMLADPKEA--- 392 (942)
T ss_pred EEeecCcCcee------ecc-eecCcCcceeeecCCChHHHHHHHHHHh-----hhcChhhHH-HHHHHhhcCHHHH---
Confidence 77888765431 233 34567766 8889999998877665444 333323333 3344555553211
Q ss_pred cCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecc
Q 025729 122 SGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW 158 (249)
Q Consensus 122 ~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~ 158 (249)
+.+.| .+-+--+||.+..-.+|.+||+|+..++
T Consensus 393 ra~ik----evhF~PFnPV~Krta~ty~d~dG~~~r~ 425 (942)
T KOG0205|consen 393 RAGIK----EVHFLPFNPVDKRTALTYIDPDGNWHRV 425 (942)
T ss_pred hhCce----EEeeccCCccccceEEEEECCCCCEEEe
Confidence 12222 1223456776778899999999998776
No 70
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=24.94 E-value=1.2e+02 Score=23.11 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=24.4
Q ss_pred cCCc-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcCCC
Q 025729 180 ETSG-QETVKLAIRALLEVVESGGKNIEVAVMTREHG 215 (249)
Q Consensus 180 ~~~s-~eai~la~~al~~~~~~~~~~iev~ii~~~g~ 215 (249)
|.++ +.|.+++..++..+.+.. .++-|+|++..|.
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~g-~~v~iaVvd~~G~ 36 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARERG-LPVSIAVVDAGGH 36 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHTT----EEEEEETTS-
T ss_pred CCcCHHHHHHHHHHHHHHHHHhC-CCeEEEEEECCCC
Confidence 3467 888899888888887654 3589999999883
No 71
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=24.52 E-value=76 Score=24.60 Aligned_cols=31 Identities=32% Similarity=0.383 Sum_probs=26.4
Q ss_pred cccC-CCCcchhhhhHHHHHhcCCcEEEEEeC
Q 025729 9 TVFS-PDGHLFQVEYALEAVRKGNAAVGVRGT 39 (249)
Q Consensus 9 ~~fs-peG~l~Qveya~~a~~~G~t~igi~~~ 39 (249)
|.|| .+|..---||...|.+.|=..|||+=.
T Consensus 7 T~~s~~dg~~~~~e~v~~A~~~Gl~~i~iTDH 38 (175)
T PF02811_consen 7 TKYSILDGKDSPEEYVEQAKEKGLDAIAITDH 38 (175)
T ss_dssp -TTTSSTSSSSHHHHHHHHHHTTESEEEEEEE
T ss_pred ccCcchhhcCCHHHHHHHHHHcCCCEEEEcCC
Confidence 4678 899999999999999999999888755
No 72
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=23.39 E-value=3.2e+02 Score=20.32 Aligned_cols=23 Identities=13% Similarity=0.326 Sum_probs=15.8
Q ss_pred EcCCCEEE----ccHHHHHHHHHHHHH
Q 025729 211 TREHGLRQ----LEEAEIDAIVSEIEA 233 (249)
Q Consensus 211 ~~~g~~~~----l~~~ei~~~~~~i~~ 233 (249)
.++|.... =+++||+.|++.+++
T Consensus 61 ekeg~~i~~g~lPt~~eVe~Fl~~v~~ 87 (105)
T PF09702_consen 61 EKEGNYIIVGYLPTDEEVEDFLDDVER 87 (105)
T ss_pred cCCCCEEecCCCCChHHHHHHHHHHHH
Confidence 45664432 367889999998864
No 73
>PRK09732 hypothetical protein; Provisional
Probab=23.35 E-value=1.9e+02 Score=22.37 Aligned_cols=35 Identities=11% Similarity=0.023 Sum_probs=28.7
Q ss_pred cCCc-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcCCC
Q 025729 180 ETSG-QETVKLAIRALLEVVESGGKNIEVAVMTREHG 215 (249)
Q Consensus 180 ~~~s-~eai~la~~al~~~~~~~~~~iev~ii~~~g~ 215 (249)
+.|| +.|.+++..++..+... +.++.|+|+|..|.
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~-g~~v~iaVvD~~G~ 40 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN-NWSVSIAVADDGGH 40 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh-CCCEEEEEEcCCCC
Confidence 4588 88888888888888765 45899999999884
No 74
>PRK08230 tartrate dehydratase subunit alpha; Validated
Probab=21.70 E-value=5.8e+02 Score=22.74 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=44.1
Q ss_pred hccCCCCcceeeeEEEEeeCCCCcce---EEEEC--CCCceecceeeeecCCchHHHHHHHhhhccCCc-HHHHHHHHHH
Q 025729 120 TQSGGVRPFGLSTLIVGFDPYTGVPS---LYQTD--PSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVKLAIRA 193 (249)
Q Consensus 120 ~~~~~~rP~~v~~iiaG~d~~~~gp~---Ly~id--p~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s-~eai~la~~a 193 (249)
++...+||=.|.. +-+....++.|. +..+| +.|...+.....-|.|+...... +-.+|.-. +...+.++++
T Consensus 101 ~~~~~LR~s~V~~-l~r~NtgdNt~~~~pvi~~~iv~~gd~l~I~~~~KGgGsEn~s~~--~mL~P~~g~egi~~fVle~ 177 (299)
T PRK08230 101 TVKAPLRHNAVET-FDEYNTGKNTGSGVPWVFWEIVPDSDDAEIEVYMAGGGCTLPGRA--KVLMPGEGYEGVVKFVFDV 177 (299)
T ss_pred hccCCCCcccCCC-ccCcCCCCCCCCCCCEEEEEEecCCCEEEEEEEecCCCcccHhhh--eeeCCccchhHHHHHHHHH
Confidence 3445566665554 222322223333 44444 55788888888999998866443 33344444 6666777777
Q ss_pred HHHHH
Q 025729 194 LLEVV 198 (249)
Q Consensus 194 l~~~~ 198 (249)
+..+-
T Consensus 178 V~~aG 182 (299)
T PRK08230 178 ITSYG 182 (299)
T ss_pred HHhhC
Confidence 66654
No 75
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=21.24 E-value=1.2e+02 Score=17.00 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=15.8
Q ss_pred eEEEEeeCCCCcceEEEECCCCc
Q 025729 132 TLIVGFDPYTGVPSLYQTDPSGT 154 (249)
Q Consensus 132 ~iiaG~d~~~~gp~Ly~idp~G~ 154 (249)
..+.|.- .+.|+||.|-.+|.
T Consensus 6 ~~v~G~r--Pg~pfl~~IpatG~ 26 (29)
T PF10632_consen 6 PRVFGAR--PGSPFLFTIPATGE 26 (29)
T ss_pred CcEEccc--CCCcEEEEeeccCc
Confidence 3456666 47899999988885
No 76
>TIGR03544 DivI1A_domain DivIVA domain. This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.
Probab=20.31 E-value=1.2e+02 Score=17.31 Aligned_cols=17 Identities=29% Similarity=0.571 Sum_probs=14.0
Q ss_pred EEccHHHHHHHHHHHHH
Q 025729 217 RQLEEAEIDAIVSEIEA 233 (249)
Q Consensus 217 ~~l~~~ei~~~~~~i~~ 233 (249)
+=++++||+.+|+.++.
T Consensus 16 rGY~~~eVD~fLd~v~~ 32 (34)
T TIGR03544 16 RGYDAAEVDAFLDRVAD 32 (34)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 34899999999998864
No 77
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=20.22 E-value=2.2e+02 Score=22.32 Aligned_cols=64 Identities=30% Similarity=0.368 Sum_probs=36.4
Q ss_pred EEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhc-----cCCc--HHHHHHHHHHHHHHH
Q 025729 133 LIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYK-----ETSG--QETVKLAIRALLEVV 198 (249)
Q Consensus 133 iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~-----~~~s--~eai~la~~al~~~~ 198 (249)
+|.|+|| ...--+-.+|-.|+.......=.-+-+..+ .++.+.=+ .|.+ .++++.+...|....
T Consensus 33 lIVGiDP-G~ttgiAildL~G~~l~l~S~R~~~~~evi-~~I~~~G~PviVAtDV~p~P~~V~Kia~~f~A~l 103 (138)
T PF04312_consen 33 LIVGIDP-GTTTGIAILDLDGELLDLKSSRNMSRSEVI-EWISEYGKPVIVATDVSPPPETVKKIARSFNAVL 103 (138)
T ss_pred EEEEECC-CceeEEEEEecCCcEEEEEeecCCCHHHHH-HHHHHcCCEEEEEecCCCCcHHHHHHHHHhCCcc
Confidence 7889998 555678899999998776432222222222 22222212 2334 666666666655544
Done!