Query 025729
Match_columns 249
No_of_seqs 122 out of 1135
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 16:21:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025729.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025729hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_D 20S proteasome; cell cy 100.0 2.1E-64 7.1E-69 433.8 21.1 236 2-238 1-239 (248)
2 1ryp_A 20S proteasome; multica 100.0 4.9E-63 1.7E-67 424.1 27.5 229 2-232 1-240 (243)
3 1ryp_D 20S proteasome; multica 100.0 3.1E-62 1.1E-66 418.6 30.6 232 3-235 1-238 (241)
4 1iru_C 20S proteasome; cell cy 100.0 1.5E-62 5.2E-67 425.1 25.9 235 2-237 3-246 (261)
5 1j2p_A Alpha-ring, proteasome 100.0 1.9E-61 6.5E-66 414.9 31.9 233 3-238 7-243 (246)
6 1iru_B 20S proteasome; cell cy 100.0 3E-62 1E-66 416.7 26.3 228 1-231 2-232 (233)
7 3h4p_A Proteasome subunit alph 100.0 1.4E-63 4.6E-68 432.0 17.4 231 1-233 9-242 (264)
8 1ryp_C 20S proteasome; multica 100.0 1.8E-61 6.1E-66 414.6 29.6 230 2-232 3-242 (244)
9 1iru_A 20S proteasome; cell cy 100.0 1.8E-61 6.3E-66 415.0 28.8 230 2-232 7-243 (246)
10 1iru_G 20S proteasome; cell cy 100.0 1.2E-61 4.2E-66 417.9 26.9 234 2-236 5-244 (254)
11 1yar_A Proteasome alpha subuni 100.0 1.3E-61 4.6E-66 412.7 26.5 223 3-227 7-232 (233)
12 1ryp_E 20S proteasome; multica 100.0 1.8E-61 6.3E-66 414.0 26.3 230 5-235 1-239 (242)
13 1iru_E 20S proteasome; cell cy 100.0 4.1E-61 1.4E-65 411.7 25.7 226 3-230 7-240 (241)
14 1ryp_B 20S proteasome; multica 100.0 1.2E-60 4.2E-65 410.8 28.2 229 1-230 2-249 (250)
15 1ryp_F 20S proteasome; multica 100.0 6.5E-61 2.2E-65 408.5 21.6 222 2-227 3-232 (233)
16 1ryp_G 20S proteasome; multica 100.0 2.1E-59 7.1E-64 401.8 29.7 226 2-230 2-237 (244)
17 1iru_F 20S proteasome; cell cy 100.0 4.2E-60 1.5E-64 410.1 24.6 227 2-232 4-237 (263)
18 3nzj_F Proteasome component C1 100.0 4.3E-59 1.5E-63 407.6 28.7 224 2-227 6-239 (288)
19 1q5q_A Proteasome alpha-type s 100.0 2.6E-52 8.9E-57 360.5 20.5 230 9-248 5-251 (259)
20 3mi0_A Proteasome subunit alph 100.0 1.8E-49 6.2E-54 340.2 26.7 218 12-238 8-244 (248)
21 3h4p_a Proteasome subunit beta 100.0 1E-47 3.6E-52 324.1 22.2 206 30-241 1-212 (219)
22 1yar_H Proteasome beta subunit 100.0 6.1E-46 2.1E-50 312.9 25.0 200 25-232 3-208 (217)
23 3nzj_K Proteasome component PR 100.0 4.3E-46 1.5E-50 325.3 23.0 210 22-237 67-281 (287)
24 2jay_A Proteasome; hydrolase; 100.0 4.8E-46 1.6E-50 325.7 22.2 231 2-236 23-279 (291)
25 1j2q_H Proteasome beta subunit 100.0 1.2E-45 4E-50 307.8 23.1 194 31-231 1-200 (202)
26 1q5r_H Proteasome beta-type su 100.0 6.6E-46 2.3E-50 325.1 22.0 213 23-238 58-289 (294)
27 1ryp_L 20S proteasome; multica 100.0 3.7E-45 1.3E-49 307.0 22.8 200 31-236 1-205 (212)
28 1q5q_H Proteasome beta-type su 100.0 1.1E-44 3.7E-49 308.7 23.9 204 31-237 1-223 (235)
29 1iru_L 20S proteasome; cell cy 100.0 6.1E-45 2.1E-49 303.9 21.2 196 31-233 1-201 (204)
30 1iru_N 20S proteasome; cell cy 100.0 2.8E-45 9.6E-50 309.1 16.6 197 25-226 3-207 (219)
31 1iru_H 20S proteasome; cell cy 100.0 2E-44 6.9E-49 301.0 19.7 193 31-229 1-199 (205)
32 1ryp_N 20S proteasome; multica 100.0 5.9E-45 2E-49 310.0 15.7 199 25-227 3-217 (233)
33 1ryp_K 20S proteasome; multica 100.0 2E-43 6.9E-48 293.3 23.2 189 30-221 1-194 (198)
34 1ryp_H 20S proteasome; multica 100.0 2E-43 7E-48 294.9 20.7 184 24-214 3-191 (205)
35 1iru_M 20S proteasome; cell cy 100.0 8.4E-43 2.9E-47 292.8 23.7 185 27-217 6-204 (213)
36 3nzj_H Proteasome component PU 100.0 8.7E-43 3E-47 300.8 24.0 192 23-221 22-218 (261)
37 1g0u_M Proteasome component PR 100.0 2.2E-44 7.6E-49 312.0 14.0 205 19-227 30-250 (266)
38 3unf_H Proteasome subunit beta 100.0 1.1E-42 3.7E-47 296.0 21.6 187 31-225 1-192 (234)
39 1ryp_M 20S proteasome; multica 100.0 6.8E-42 2.3E-46 289.1 23.1 185 27-217 6-213 (222)
40 1iru_J 20S proteasome; cell cy 100.0 8.2E-42 2.8E-46 285.1 23.0 183 28-214 6-194 (205)
41 1iru_K 20S proteasome; cell cy 100.0 7.6E-42 2.6E-46 284.5 22.7 188 30-221 1-193 (201)
42 1ryp_J 20S proteasome; multica 100.0 1.8E-41 6.3E-46 282.8 24.4 183 27-214 5-193 (204)
43 1ryp_I 20S proteasome; multica 100.0 2.6E-41 8.9E-46 285.6 23.8 185 31-222 1-190 (222)
44 3unf_N Proteasome subunit beta 100.0 2.7E-42 9.3E-47 286.7 17.1 190 31-228 1-197 (199)
45 1iru_I 20S proteasome; cell cy 100.0 2.4E-40 8.1E-45 281.8 22.6 184 31-222 1-189 (234)
46 2z3b_A ATP-dependent protease 100.0 2.4E-34 8.3E-39 235.4 18.8 165 28-210 3-179 (180)
47 1g3k_A ATP-dependent protease 100.0 2.1E-33 7.1E-38 228.6 18.8 163 31-211 1-173 (174)
48 1m4y_A ATP-dependent protease 100.0 3.3E-33 1.1E-37 226.8 19.6 163 31-210 1-171 (171)
49 3rj2_X ORF158L protein, putati 44.8 4.1 0.00014 29.9 -0.3 17 2-18 53-69 (138)
50 4gof_A Small glutamine-rich te 41.3 56 0.0019 20.2 4.6 33 169-201 8-44 (52)
51 3jx9_A Putative phosphoheptose 37.4 21 0.00071 27.8 2.7 31 8-38 81-112 (170)
52 4eo3_A Bacterioferritin comigr 31.6 26 0.0009 29.9 2.7 45 143-187 102-148 (322)
53 4asv_A Small glutamine-rich te 29.1 75 0.0026 22.1 4.1 33 169-201 25-61 (92)
54 2lxb_A Small glutamine-rich te 28.5 1E+02 0.0035 20.5 4.6 33 169-201 13-49 (74)
55 2yxo_A Histidinol phosphatase; 28.4 41 0.0014 27.1 3.3 32 9-40 8-39 (267)
56 3kol_A Oxidoreductase, glyoxal 28.0 62 0.0021 23.0 4.0 21 141-161 131-151 (156)
57 4g6x_A Glyoxalase/bleomycin re 22.0 83 0.0028 22.8 3.7 29 129-158 120-148 (155)
58 1vd2_A Protein kinase C, IOTA 21.6 1.3E+02 0.0045 20.6 4.3 50 180-232 24-75 (89)
59 2rbb_A Glyoxalase/bleomycin re 21.0 1.2E+02 0.0042 21.2 4.4 22 143-164 114-135 (141)
60 1hbx_G ETS-domain protein ELK- 20.2 74 0.0025 24.3 3.0 24 207-230 25-48 (157)
No 1
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=2.1e-64 Score=433.79 Aligned_cols=236 Identities=70% Similarity=1.076 Sum_probs=225.1
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHH
Q 025729 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADA 81 (249)
Q Consensus 2 ~~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 81 (249)
|+||+.+|+|||||||||||||++|+++|+|+|||+++||||||+|++.+.+++.+++.+||++|++||+|+++|..+|+
T Consensus 1 ~~yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~ 80 (248)
T 1iru_D 1 MSYDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADA 80 (248)
T ss_dssp -CCCCCCSCCCTTSCCHHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHH
T ss_pred CCccCCCceECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHHH
Confidence 34999999999999999999999999999999999999999999999999988888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceee
Q 025729 82 RVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (249)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~ 161 (249)
+.++++++.+++.|+++++++++++.+++++++++|.|++++++|||+|++||||||+ ++||+||.+||+|++.+++++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~ 159 (248)
T 1iru_D 81 RIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDF-DGTPRLYQTDPSGTYHAWKAN 159 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECS-SSCEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeC-CCCcEEEEEcCCCcEEEeeEE
Confidence 9999999999999999999999999999999999999999999999999999999996 679999999999999999999
Q ss_pred eecCCchHHHHHHHhhhccCC--c-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcCCCEEEccHHHHHHHHHHHHHHHHHH
Q 025729 162 ATGRNSNSIREFLEKNYKETS--G-QETVKLAIRALLEVVESGGKNIEVAVMTREHGLRQLEEAEIDAIVSEIEAEKAAA 238 (249)
Q Consensus 162 aiG~g~~~~~~~Le~~~~~~~--s-~eai~la~~al~~~~~~~~~~iev~ii~~~g~~~~l~~~ei~~~~~~i~~~~~~~ 238 (249)
|+|+|+.+++++||++|+++| + +||++++++||..+.+.++++++|++|+++|+|++++++||++++.++...+.++
T Consensus 160 aiG~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~~sg~~i~v~vi~~~g~~~~l~~~ei~~~~~~~~~~~~~~ 239 (248)
T 1iru_D 160 AIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEEN 239 (248)
T ss_dssp EESTTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSCTTSTTCCEEEEESSSCEECCCHHHHHHHTTTTTTTTTTT
T ss_pred EECCCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHcCCCCcEEEEEEECCCcEEECCHHHHHHHHHHHHhcchhh
Confidence 999999999999999999999 9 9999999999999988778899999999998899999999999999986554333
No 2
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=4.9e-63 Score=424.05 Aligned_cols=229 Identities=33% Similarity=0.526 Sum_probs=221.2
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHhc-CCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHH
Q 025729 2 ARYDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKAD 80 (249)
Q Consensus 2 ~~yd~~~~~fspeG~l~Qveya~~a~~~-G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 80 (249)
++||+.+|+|||||||||||||++|+++ |+|+|||+++||||||+|+|.+.+++.+++.+||++|++|++|+++|+.+|
T Consensus 1 ~~yd~~~t~fsp~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 80 (243)
T 1ryp_A 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPD 80 (243)
T ss_dssp CGGGGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHH
T ss_pred CCCCCCCceECCCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHHH
Confidence 4799999999999999999999999999 999999999999999999999988888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceeccee
Q 025729 81 ARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (249)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~ 160 (249)
++.++++++.+++.|+++++++++++.+++++++++|.|++++++|||+|++||||||+ ++||+||.+||+|++.++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~-~~gp~Ly~~dp~G~~~~~~~ 159 (243)
T 1ryp_A 81 ARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDE-ELGPSIYKTDPAGYYVGYKA 159 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEET-TTEEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcC-CCCcEEEEEcCCCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999996 58999999999999999999
Q ss_pred eeecCCchHHHHHHHhhhcc-------CCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcCCCEEEccHHHHHHHHHH
Q 025729 161 NATGRNSNSIREFLEKNYKE-------TSG-QETVKLAIRALLEVVES--GGKNIEVAVMTREHGLRQLEEAEIDAIVSE 230 (249)
Q Consensus 161 ~aiG~g~~~~~~~Le~~~~~-------~~s-~eai~la~~al~~~~~~--~~~~iev~ii~~~g~~~~l~~~ei~~~~~~ 230 (249)
+|+|++++.++++||+.|++ +|+ +||++++++||..+.++ ++++++|++|+++| |++++++||++++.+
T Consensus 160 ~a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~~~~rd~s~~~iev~vi~~~g-~~~l~~~ei~~~~~~ 238 (243)
T 1ryp_A 160 TATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKDK-FFTLSAENIEERLVA 238 (243)
T ss_dssp EEESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHHHHTCCCCTTSEEEEEEETTE-EEECCHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCC-eEECCHHHHHHHHHH
Confidence 99999999999999999999 999 99999999999999875 47799999999998 999999999999998
Q ss_pred HH
Q 025729 231 IE 232 (249)
Q Consensus 231 i~ 232 (249)
++
T Consensus 239 ~~ 240 (243)
T 1ryp_A 239 IA 240 (243)
T ss_dssp HT
T ss_pred hh
Confidence 83
No 3
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=3.1e-62 Score=418.58 Aligned_cols=232 Identities=59% Similarity=1.023 Sum_probs=221.5
Q ss_pred CCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccC-cccceEEecCcEEEEEeccHHHH
Q 025729 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSR-MVRKIVSLDNHIALACAGLKADA 81 (249)
Q Consensus 3 ~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~-~~~Ki~~i~~~i~~~~sG~~~D~ 81 (249)
+||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+.+++..+ +.+||++|++|++|+++|..+|+
T Consensus 1 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (241)
T 1ryp_D 1 GYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADS 80 (241)
T ss_dssp CCCCCCSCCBTTTBCHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHH
T ss_pred CCCCCceeECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHH
Confidence 69999999999999999999999999999999999999999999999999766554 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCC-CcceEEEECCCCceeccee
Q 025729 82 RVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYT-GVPSLYQTDPSGTFSAWKA 160 (249)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~-~gp~Ly~idp~G~~~~~~~ 160 (249)
+.+.++++.+++.|+++++++++++.+++++++++|.|++++++|||+|++||||||+ + +||+||.+||+|++.++++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~-~~~gp~Ly~idp~G~~~~~~~ 159 (241)
T 1ryp_D 81 RILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDP-RDDEPKLYQTEPSGIYSSWSA 159 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCT-TCCSCEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcC-CCCCeeEEEECCCCCEEEeee
Confidence 9999999999999999999999999999999999999999989999999999999995 3 8999999999999999999
Q ss_pred eeecCCchHHHHHHHhhh---ccCCc-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcCCCEEEccHHHHHHHHHHHHHHH
Q 025729 161 NATGRNSNSIREFLEKNY---KETSG-QETVKLAIRALLEVVESGGKNIEVAVMTREHGLRQLEEAEIDAIVSEIEAEK 235 (249)
Q Consensus 161 ~aiG~g~~~~~~~Le~~~---~~~~s-~eai~la~~al~~~~~~~~~~iev~ii~~~g~~~~l~~~ei~~~~~~i~~~~ 235 (249)
+|+|+|+.+++++||+.| +++|+ +||++++++||..+.+.++++++|++|+++++|++++++||++++.++++++
T Consensus 160 ~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~~~~~~~ 238 (241)
T 1ryp_D 160 QTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQTGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQEK 238 (241)
T ss_dssp EEESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHCSCSTTEEEEEEETTTEEEECCHHHHHHHHHHHTHHH
T ss_pred EEECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCcEEECCHHHHHHHHHHHhhhh
Confidence 999999999999999999 99999 9999999999999988778899999999997799999999999999985543
No 4
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=1.5e-62 Score=425.15 Aligned_cols=235 Identities=37% Similarity=0.655 Sum_probs=221.5
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCccccccc-CcccceEEecCcEEEEEeccHHH
Q 025729 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDS-RMVRKIVSLDNHIALACAGLKAD 80 (249)
Q Consensus 2 ~~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~-~~~~Ki~~i~~~i~~~~sG~~~D 80 (249)
++||+.+|+|||||||||||||++|+++|+|+|||+++||||||+|++.++++... ++.+||++|++||+|+++|..+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD 82 (261)
T 1iru_C 3 RRYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSD 82 (261)
T ss_dssp TTTCCCTTCCCTTSCCHHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHH
T ss_pred CccCCCCccCCCCCeehHHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHH
Confidence 47999999999999999999999999999999999999999999999999866554 45999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceeccee
Q 025729 81 ARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (249)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~ 160 (249)
++.++++++.+++.|+++++++++++.+++++++++|.|+++.++|||+|++||||||+ ++||+||.+||+|++.++++
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~ 161 (261)
T 1iru_C 83 ANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDK-HYGFQLYQSDPSGNYGGWKA 161 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEET-TTEEEEEEEETTTEEEECSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeC-CCCcEEEEECCCceEEeeee
Confidence 99999999999999999999999999999999999999999999999999999999996 67999999999999999999
Q ss_pred eeecCCchHHHHHHHhhhcc-CCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCC---EEEccHHHHHHHHHHHH
Q 025729 161 NATGRNSNSIREFLEKNYKE-TSG-QETVKLAIRALLEVVES---GGKNIEVAVMTREHG---LRQLEEAEIDAIVSEIE 232 (249)
Q Consensus 161 ~aiG~g~~~~~~~Le~~~~~-~~s-~eai~la~~al~~~~~~---~~~~iev~ii~~~g~---~~~l~~~ei~~~~~~i~ 232 (249)
+|+|+|+.+++++|++.|++ +|+ +||++++++||..+.++ ++.+++|++|+++|. |++++++||++++.++.
T Consensus 162 ~aiGsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l~~~~ 241 (261)
T 1iru_C 162 TCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHE 241 (261)
T ss_dssp EEESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHHHH
T ss_pred EEeCcccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHHHHHHHHH
Confidence 99999999999999999999 999 99999999999999875 467999999999874 89999999999999996
Q ss_pred HHHHH
Q 025729 233 AEKAA 237 (249)
Q Consensus 233 ~~~~~ 237 (249)
+.+++
T Consensus 242 ~~~~~ 246 (261)
T 1iru_C 242 EEEAK 246 (261)
T ss_dssp TTTTT
T ss_pred hchhh
Confidence 54443
No 5
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=1.9e-61 Score=414.89 Aligned_cols=233 Identities=43% Similarity=0.697 Sum_probs=222.3
Q ss_pred CCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHHH
Q 025729 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADAR 82 (249)
Q Consensus 3 ~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 82 (249)
+||+.+|+|||||||+|||||.+|+++|+|+|||+++||||||+|++.+.+++.+++.+||++|++||+|+++|..+|++
T Consensus 7 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~ 86 (246)
T 1j2p_A 7 GYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADAR 86 (246)
T ss_dssp TSSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEEEECHHHHH
T ss_pred CcCCCCceECCCCeehHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEEeEccHHHH
Confidence 69999999999999999999999999999999999999999999999998887788999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeee
Q 025729 83 VLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANA 162 (249)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~a 162 (249)
.+.++++.+++.|+++++++++++.+++++++++|.|+++.+.|||++++|||||| +||+||.+||+|++.+++++|
T Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D---~gp~Ly~idp~G~~~~~~~~a 163 (246)
T 1j2p_A 87 VLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN---EVPKLYETDPSGALLEYKATA 163 (246)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES---SSEEEEEECTTCCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC---CCCEEEEECCCceEEeeeEEE
Confidence 99999999999999999999999999999999999999999999999999999998 589999999999999999999
Q ss_pred ecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEE-cCCCEEEccHHHHHHHHHHHHHHHHHH
Q 025729 163 TGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVES--GGKNIEVAVMT-REHGLRQLEEAEIDAIVSEIEAEKAAA 238 (249)
Q Consensus 163 iG~g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~~--~~~~iev~ii~-~~g~~~~l~~~ei~~~~~~i~~~~~~~ 238 (249)
+|+|+.+++++||+.|+++|+ +||++++++||..+.++ ++++++|++|+ ++++|+.++++||+++++++.+++.+.
T Consensus 164 iGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~l~~~ei~~~~~~~~~~~~~~ 243 (246)
T 1j2p_A 164 IGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIREL 243 (246)
T ss_dssp ESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEETTTCCCEECCHHHHHHHHHHHHHHHHHH
T ss_pred ECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCceEECCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999 99999999999999874 57799999999 755699999999999999996655543
No 6
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=3e-62 Score=416.73 Aligned_cols=228 Identities=41% Similarity=0.667 Sum_probs=219.4
Q ss_pred CCCCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHH
Q 025729 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKAD 80 (249)
Q Consensus 1 ~~~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 80 (249)
+++||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+.+++.+++.+||++|++|++|+++|..+|
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (233)
T 1iru_B 2 ERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPD 81 (233)
T ss_dssp CCCCCSBSCCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHHH
T ss_pred CCCccCCceeECCCCeEehhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEccHH
Confidence 36899999999999999999999999999999999999999999999999888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceeccee
Q 025729 81 ARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (249)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~ 160 (249)
++.+.++++.+++.|+++++.+++++.+++++++++|.|++++++|||+|++|||||| ++||+||.+||+|++.++++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D--~~gp~Ly~id~~G~~~~~~~ 159 (233)
T 1iru_B 82 YRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWN--EGRPYLFQSDPSGAYFAWKA 159 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEEC--SSSEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEe--CCCCeEEEECCCCCEEEeeE
Confidence 9999999999999999999999999999999999999999998999999999999999 57899999999999999999
Q ss_pred eeecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcCCCEEEccHHHHHHHHHHH
Q 025729 161 NATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVES--GGKNIEVAVMTREHGLRQLEEAEIDAIVSEI 231 (249)
Q Consensus 161 ~aiG~g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~~--~~~~iev~ii~~~g~~~~l~~~ei~~~~~~i 231 (249)
+|+|+|+++++++||++|+++|+ +||++++++||..+.++ ++++++|++|+++| +++++++||+++++++
T Consensus 160 ~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d~sg~~i~v~vi~~~g-~~~l~~~ei~~~~~~~ 232 (233)
T 1iru_B 160 TAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAG-FRRLTPTEVKDYLAAI 232 (233)
T ss_dssp EEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSCCCSSSEEEEEEETTE-EEECCHHHHHHHHTTC
T ss_pred EEECCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCC-EEECCHHHHHHHHHhc
Confidence 99999999999999999999999 99999999999999875 46799999999998 9999999999998754
No 7
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.4e-63 Score=431.97 Aligned_cols=231 Identities=43% Similarity=0.715 Sum_probs=215.5
Q ss_pred CCCCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHH
Q 025729 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKAD 80 (249)
Q Consensus 1 ~~~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 80 (249)
+++||+.+|+|||+|||||||||++|+++|+|+|||+++||||||+|++.+++++.+++.+||++|++||+|+++|+.+|
T Consensus 9 ~~~yd~~~t~fSp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~aG~~aD 88 (264)
T 3h4p_A 9 PSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVAD 88 (264)
T ss_dssp -------CCCCCSSSSCHHHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEEEECSHH
T ss_pred ccccCCCcceECCCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEeccchHH
Confidence 36899999999999999999999999999999999999999999999999998888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceeccee
Q 025729 81 ARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (249)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~ 160 (249)
++.++++++.+++.|+++++++++++.+++++++++|.|++++++|||+|++|||||| ++||+||.+||+|++.++++
T Consensus 89 ~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D--~~gp~Ly~iDp~G~~~~~~~ 166 (264)
T 3h4p_A 89 ARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGID--KNEARLFETDPSGALIEYKA 166 (264)
T ss_dssp HHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEE--TTEEEEEEECTTCCCEEESE
T ss_pred HHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEe--CCcCEEEEECCCceEEecCe
Confidence 9999999999999999999999999999999999999999999999999999999999 57999999999999999999
Q ss_pred eeecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHh-cCCCcEEEEEEEcC-CCEEEccHHHHHHHHHHHHH
Q 025729 161 NATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVE-SGGKNIEVAVMTRE-HGLRQLEEAEIDAIVSEIEA 233 (249)
Q Consensus 161 ~aiG~g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~-~~~~~iev~ii~~~-g~~~~l~~~ei~~~~~~i~~ 233 (249)
+|+|+|+.+++++|++.|+++|+ +||++++++||..+.+ .++++++|++|+++ .+|++++++||+++++++.+
T Consensus 167 ~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~~sg~~iev~vi~~~~~~~~~l~~~ei~~~~~~~~~ 242 (264)
T 3h4p_A 167 TAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANEDIKPENVDVCIITVKDAQFKKIPVEEIKKLIEKVKK 242 (264)
T ss_dssp EEESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSSCCTTSEEEEEEETTTTEEEECCTTTTGGGTTTTTT
T ss_pred EEECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEEeCCCcEEECCHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999999999987 46789999999975 36999999999999988763
No 8
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=1.8e-61 Score=414.59 Aligned_cols=230 Identities=35% Similarity=0.639 Sum_probs=220.5
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccc-cCcccceEEecCcEEEEEeccHHH
Q 025729 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQD-SRMVRKIVSLDNHIALACAGLKAD 80 (249)
Q Consensus 2 ~~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D 80 (249)
++||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+++++. +++.+||++|++||+|+++|..+|
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD 82 (244)
T 1ryp_C 3 RRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTAD 82 (244)
T ss_dssp GGGCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHH
T ss_pred CccCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHH
Confidence 4799999999999999999999999999999999999999999999999997766 889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceeccee
Q 025729 81 ARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (249)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~ 160 (249)
++.++++++.+++.|+++++++++++.+++++++++|.|+++.++|||++++||||||+ ++||+||.+||+|++.++++
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~ 161 (244)
T 1ryp_C 83 AEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDD-RYGYQLYTSNPSGNYTGWKA 161 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEET-TTEEEEEEECTTCCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcC-CCCCEEEEECCCccEEeeeE
Confidence 99999999999999999999999999999999999999999999999999999999996 57999999999999999999
Q ss_pred eeecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEE--cCCC---EEEccHHHHHHHHHHH
Q 025729 161 NATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVES---GGKNIEVAVMT--REHG---LRQLEEAEIDAIVSEI 231 (249)
Q Consensus 161 ~aiG~g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~~---~~~~iev~ii~--~~g~---~~~l~~~ei~~~~~~i 231 (249)
+|+|+|+.+++++||++|+++|+ +||++++++||..+.++ ++.+++|++|+ +++. |+.++++||+++++++
T Consensus 162 ~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei~~~~~~~ 241 (244)
T 1ryp_C 162 ISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVKT 241 (244)
T ss_dssp EEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHHHHHHHHHh
Confidence 99999999999999999999999 99999999999999876 36799999999 9876 9999999999999887
Q ss_pred H
Q 025729 232 E 232 (249)
Q Consensus 232 ~ 232 (249)
+
T Consensus 242 ~ 242 (244)
T 1ryp_C 242 G 242 (244)
T ss_dssp T
T ss_pred h
Confidence 4
No 9
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=1.8e-61 Score=414.99 Aligned_cols=230 Identities=37% Similarity=0.594 Sum_probs=221.0
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHhc-CCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHH
Q 025729 2 ARYDRAITVFSPDGHLFQVEYALEAVRK-GNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKAD 80 (249)
Q Consensus 2 ~~yd~~~~~fspeG~l~Qveya~~a~~~-G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 80 (249)
++||+++|+|||||||+|||||++|+++ |+|+|||+++||||||+|++.+.+++.+++.+||++|++|++|+++|..+|
T Consensus 7 ~~yd~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 86 (246)
T 1iru_A 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTAD 86 (246)
T ss_dssp CTTTTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEEEEECHHH
T ss_pred CCcCCCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEEEeccHHH
Confidence 4799999999999999999999999999 999999999999999999999888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceeccee
Q 025729 81 ARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKA 160 (249)
Q Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~ 160 (249)
++.+.++++.+++.|+++++++++++.+++++++++|.|++++++|||+|++||||||+ ++||+||.+||+|++.++++
T Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~ 165 (246)
T 1iru_A 87 SRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDE-EQGPQVYKCDPAGYYCGFKA 165 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEET-TTEEEEEEECTTSCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeC-CCCeEEEEEcCCeeEEEeeE
Confidence 99999999999999999999999999999999999999999999999999999999996 58999999999999999999
Q ss_pred eeecCCchHHHHHHHhhhcc--CCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcCCC-EEEccHHHHHHHHHHHH
Q 025729 161 NATGRNSNSIREFLEKNYKE--TSG-QETVKLAIRALLEVVES--GGKNIEVAVMTREHG-LRQLEEAEIDAIVSEIE 232 (249)
Q Consensus 161 ~aiG~g~~~~~~~Le~~~~~--~~s-~eai~la~~al~~~~~~--~~~~iev~ii~~~g~-~~~l~~~ei~~~~~~i~ 232 (249)
+|+|+|+++++++||++|++ +|+ +||++++++||..+.++ ++++++|++|+++|. |++++++||++++++++
T Consensus 166 ~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~~~~ 243 (246)
T 1iru_A 166 TAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGVVTVENPKFRILTEAEIDAHLVALA 243 (246)
T ss_dssp EEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEETTEEEEEECCHHHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEECCCCeEEECCHHHHHHHHHHhh
Confidence 99999999999999999999 999 99999999999999875 477999999999985 89999999999999884
No 10
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=1.2e-61 Score=417.91 Aligned_cols=234 Identities=28% Similarity=0.397 Sum_probs=221.6
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHH
Q 025729 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADA 81 (249)
Q Consensus 2 ~~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 81 (249)
++||+.+|+|||||||||||||++|+++|+|+|||+++||||||+|+|.+.++...++.+||++|++||+|+++|..+|+
T Consensus 5 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD~ 84 (254)
T 1iru_G 5 TGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADA 84 (254)
T ss_dssp SSTTSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEECHHHH
T ss_pred cccCCCCccCCcCCccHHHHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecChHHH
Confidence 57999999999999999999999999999999999999999999999999977667889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceee
Q 025729 82 RVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (249)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~ 161 (249)
+.++++++.+++.|+++++++++++.+++++++++|.|++++++|||+|++||||||+ ++||+||.+||+|++.+++++
T Consensus 85 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~ 163 (254)
T 1iru_G 85 RSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSV-NDGAQLYMIDPSGVSYGYWGC 163 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEET-TTEEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeC-CCCcEEEEEcCCCCEEeeeeE
Confidence 9999999999999999999999999999999999999999999999999999999996 679999999999999999999
Q ss_pred eecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcC--CCEEEccHHHHHHHHHHHHHHH
Q 025729 162 ATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVES---GGKNIEVAVMTRE--HGLRQLEEAEIDAIVSEIEAEK 235 (249)
Q Consensus 162 aiG~g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~~---~~~~iev~ii~~~--g~~~~l~~~ei~~~~~~i~~~~ 235 (249)
|+|+|+++++++||+.|+++|+ +||++++++||..+.+. ++.+++|++|+++ |.|++++++++++++.......
T Consensus 164 aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~~~~~~~ 243 (254)
T 1iru_G 164 AIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAKESL 243 (254)
T ss_dssp EESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHHHHHHHH
T ss_pred EecCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999 99999999999999865 4668999999987 5699999999999999875443
Q ss_pred H
Q 025729 236 A 236 (249)
Q Consensus 236 ~ 236 (249)
+
T Consensus 244 ~ 244 (254)
T 1iru_G 244 K 244 (254)
T ss_dssp C
T ss_pred h
Confidence 3
No 11
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=1.3e-61 Score=412.69 Aligned_cols=223 Identities=42% Similarity=0.641 Sum_probs=209.8
Q ss_pred CCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHHH
Q 025729 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADAR 82 (249)
Q Consensus 3 ~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 82 (249)
+||+.+|+|||||||+|||||.+|+++|+|+|||+++||||||+|++.+++++.+++.+||++|++|++|+++|..+|++
T Consensus 7 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~ 86 (233)
T 1yar_A 7 AYSRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADAR 86 (233)
T ss_dssp ------CCCCTTSCCHHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEEEEBHHHHH
T ss_pred cCCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEEeeCHHHHH
Confidence 79999999999999999999999999999999999999999999999999888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeee
Q 025729 83 VLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANA 162 (249)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~a 162 (249)
.+.++++.+++.|+++++++++++.+++++++++|.|++++++|||++++|||||| ++||+||.+||+|++.+++++|
T Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D--~~gp~Ly~id~~G~~~~~~~~a 164 (233)
T 1yar_A 87 VLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGID--QIGPRLFDCDPAGTINEYKATA 164 (233)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEEC--SSCEEEEEECTTCCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEe--CCCCEEEEECCCCCEEeeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999 4789999999999999999999
Q ss_pred ecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcCCCEEEccHHHHHHH
Q 025729 163 TGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVES--GGKNIEVAVMTREHGLRQLEEAEIDAI 227 (249)
Q Consensus 163 iG~g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~~--~~~~iev~ii~~~g~~~~l~~~ei~~~ 227 (249)
+|+|+.+++++||+.|+++|+ +||++++++||..+.++ ++++++|++|+++|+|++++++||+++
T Consensus 165 iG~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~s~~~i~v~vi~~~~~~~~~~~~ei~~~ 232 (233)
T 1yar_A 165 IGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGNKYRIYDQEEVKKF 232 (233)
T ss_dssp ESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSCCCCCCEEEEEETTSCCEECCHHHHHTT
T ss_pred EcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCEEECCHHHHHhh
Confidence 999999999999999999999 99999999999999875 477999999999988999999999865
No 12
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=1.8e-61 Score=414.00 Aligned_cols=230 Identities=33% Similarity=0.614 Sum_probs=220.0
Q ss_pred CCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHHHHH
Q 025729 5 DRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVL 84 (249)
Q Consensus 5 d~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l 84 (249)
|+.+|+|||||||||||||++|+++|+|+|||+++||||||+|++.+.+++.+++.+||++|++|++|+++|..+|++.+
T Consensus 1 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l 80 (242)
T 1ryp_E 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSM 80 (242)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHHH
T ss_pred CCCCceECCCCcChHHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHHH
Confidence 78999999999999999999999999999999999999999999999977668889999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCC------CCcceeeeEEEEeeCCCCcceEEEECCCCceecc
Q 025729 85 VNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGG------VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW 158 (249)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~------~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~ 158 (249)
+++++.+++.|+++++++++++.+++++++++|.|+++++ .|||+|++||||||+ ++||+||.+||+|++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~ 159 (242)
T 1ryp_E 81 IEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDA-DDGYQLFHAEPSGTFYRY 159 (242)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEET-TTEEEEEEECTTSCEEEB
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeC-CCCCEEEEECCCCCEecc
Confidence 9999999999999999999999999999999999999988 999999999999996 679999999999999999
Q ss_pred eeeeecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcCCCEEEccHHHHHHHHHHHHHHH
Q 025729 159 KANATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVES--GGKNIEVAVMTREHGLRQLEEAEIDAIVSEIEAEK 235 (249)
Q Consensus 159 ~~~aiG~g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~~--~~~~iev~ii~~~g~~~~l~~~ei~~~~~~i~~~~ 235 (249)
+++|+|+|+.+++++||+.|+++|+ +||++++++||..+.++ ++.+++|++|+++|.|++++++||++++.++++++
T Consensus 160 ~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~~~~ei~~~~~~~~~~~ 239 (242)
T 1ryp_E 160 NAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELIKELKEKE 239 (242)
T ss_dssp SEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEEETTTEEEECCHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCeEECCHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999 99999999999999874 57899999999998789999999999999985543
No 13
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=4.1e-61 Score=411.65 Aligned_cols=226 Identities=35% Similarity=0.632 Sum_probs=216.8
Q ss_pred CCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHHH
Q 025729 3 RYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADAR 82 (249)
Q Consensus 3 ~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~ 82 (249)
+||+.+|+|||||||+|||||.+|+++|+|+|||+++||||||+|++.+.+++.+++.+||++|++|++|+++|..+|++
T Consensus 7 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~ 86 (241)
T 1iru_E 7 EYDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAK 86 (241)
T ss_dssp -CCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEEEECHHHHH
T ss_pred CCCCCCceECCCCccHHHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEEeeChHHHH
Confidence 79999999999999999999999999999999999999999999999999776688999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCC-----CCcceeeeEEEEeeCCCCcceEEEECCCCceec
Q 025729 83 VLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGG-----VRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSA 157 (249)
Q Consensus 83 ~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~-----~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~ 157 (249)
.++++++.+++.|+++++++++++.+++++++++|.|+++.+ .|||+|++|||||| ++||+||.+||+|++.+
T Consensus 87 ~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D--~~gp~Ly~idp~G~~~~ 164 (241)
T 1iru_E 87 TLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVD--EKGPQLFHMDPSGTFVQ 164 (241)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEE--TTEEEEEEECTTSCEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEe--CCCCEEEEECCCCcEEe
Confidence 999999999999999999999999999999999999999888 89999999999999 67999999999999999
Q ss_pred ceeeeecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcCCCEEEccHHHHHHHHHH
Q 025729 158 WKANATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVES--GGKNIEVAVMTREHGLRQLEEAEIDAIVSE 230 (249)
Q Consensus 158 ~~~~aiG~g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~~--~~~~iev~ii~~~g~~~~l~~~ei~~~~~~ 230 (249)
++++|+|+|+.+++++||+.|+++|+ +||++++++||..+.++ ++++++|++|++++.|++++++||++++.+
T Consensus 165 ~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~~ 240 (241)
T 1iru_E 165 CDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEEKLNATNIELATVQPGQNFHMFTKEELEEVIKD 240 (241)
T ss_dssp BSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEECSSSCCEECCHHHHHHHHTT
T ss_pred cceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccCCCCCEEEEEEECCCCeEECCHHHHHHHHHh
Confidence 99999999999999999999999999 99999999999999874 578999999999988999999999999864
No 14
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1.2e-60 Score=410.77 Aligned_cols=229 Identities=37% Similarity=0.588 Sum_probs=217.7
Q ss_pred CCCCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHH
Q 025729 1 MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKAD 80 (249)
Q Consensus 1 ~~~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D 80 (249)
+++||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+.+++.+++.+||++|++|++|++||..+|
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (250)
T 1ryp_B 2 TDRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPD 81 (250)
T ss_dssp CCCCCSBSSCBCTTSCBHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECHHH
T ss_pred CCcccCCceeECCCCccHHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEeeeCHHH
Confidence 34799999999999999999999999999999999999999999999999888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecce
Q 025729 81 ARVLVNRARIECQS-HRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK 159 (249)
Q Consensus 81 ~~~l~~~~~~~~~~-~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~ 159 (249)
++.++++++.+++. |++.++.+++++.+++.++++++.++++.++|||+|++||||||+ ++||+||.+||+|++.+++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~ 160 (250)
T 1ryp_B 82 YRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDE-FNGFSLYQVDPSGSYFPWK 160 (250)
T ss_dssp HHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEET-TTEEEEEEECTTSCEEEBS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcC-CCCcEEEEECCCCCEEeec
Confidence 99999999999999 999999999999999999999999999989999999999999996 5799999999999999999
Q ss_pred eeeecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhc--CCCcEEEEEEEcC---------------CCEEEccH
Q 025729 160 ANATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVES--GGKNIEVAVMTRE---------------HGLRQLEE 221 (249)
Q Consensus 160 ~~aiG~g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~~--~~~~iev~ii~~~---------------g~~~~l~~ 221 (249)
++|+|+|+.+++++||+.|+++|+ +||++++++||..+.++ ++++++|++|+++ ++|+++++
T Consensus 161 ~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l~~ 240 (250)
T 1ryp_B 161 ATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEFNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTS 240 (250)
T ss_dssp EEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCSCCSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEECCH
T ss_pred eeEecCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhccccCCCCEEEEEEEccccccccccccccCCCCCeEECCH
Confidence 999999999999999999999999 99999999999999765 5789999999986 24999999
Q ss_pred HHHHHHHHH
Q 025729 222 AEIDAIVSE 230 (249)
Q Consensus 222 ~ei~~~~~~ 230 (249)
+||++++.+
T Consensus 241 ~ei~~~l~~ 249 (250)
T 1ryp_B 241 QEINDRLEA 249 (250)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999999864
No 15
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=6.5e-61 Score=408.46 Aligned_cols=222 Identities=32% Similarity=0.527 Sum_probs=211.3
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHH
Q 025729 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADA 81 (249)
Q Consensus 2 ~~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 81 (249)
++||+.+|+|||||||+|||||++|+++|+|+|||+++||||||+|++.+.++. ++.+||++|++||+|+++|..+|+
T Consensus 3 ~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~--~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (233)
T 1ryp_F 3 NNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELS--SYQKKIIKCDEHMGLSLAGLAPDA 80 (233)
T ss_dssp HHHSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHHH
T ss_pred CcccCCCccCCCCCeehHHHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccccc--cccCcEEEEcCCEEEEEEechHHH
Confidence 369999999999999999999999999999999999999999999999988765 378999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceee
Q 025729 82 RVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (249)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~ 161 (249)
+.++++++.+++.|+++++++++++.+++++++++|.|+|+.+.|||+|++|||||| ++||+||.+||+|++.+++++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D--~~gp~Ly~idp~G~~~~~~~~ 158 (233)
T 1ryp_F 81 RVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYD--KSGAHLLEFQPSGNVTELYGT 158 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEE--TTEEEEEEECTTSCEEEESEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEe--CCcCEEEEECCCCCeeeeeEE
Confidence 999999999999999999999999999999999999999999999999999999999 478999999999999999999
Q ss_pred eecCCchHHHHHHHhhhcc--CC--c-HHHHHHHHHHHHHHHh---cCCCcEEEEEEEcCCCEEEccHHHHHHH
Q 025729 162 ATGRNSNSIREFLEKNYKE--TS--G-QETVKLAIRALLEVVE---SGGKNIEVAVMTREHGLRQLEEAEIDAI 227 (249)
Q Consensus 162 aiG~g~~~~~~~Le~~~~~--~~--s-~eai~la~~al~~~~~---~~~~~iev~ii~~~g~~~~l~~~ei~~~ 227 (249)
|+|+|+++++++||+.|++ +| + +||++++++||..+.+ .++.+++|++|+++++|++++++||+++
T Consensus 159 aiG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~~d~~~s~~~i~v~vi~~~~~~~~l~~~ei~~~ 232 (233)
T 1ryp_F 159 AIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKY 232 (233)
T ss_dssp EESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSCCSSCCCTTTEEEEEEETTEEEEEEEGGGGGGG
T ss_pred EECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhhcccCCCCcEEEEEEECCCCEEECCHHHHHhh
Confidence 9999999999999999999 99 9 9999999999999883 2577999999999956999999999865
No 16
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=2.1e-59 Score=401.76 Aligned_cols=226 Identities=33% Similarity=0.471 Sum_probs=211.5
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHH
Q 025729 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADA 81 (249)
Q Consensus 2 ~~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 81 (249)
++||+++|+|||||||+|||||++|+++|+|+|||+++||||||+|++.++++...++.+||++|++||+|+++|..+|+
T Consensus 2 ~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD~ 81 (244)
T 1ryp_G 2 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDG 81 (244)
T ss_dssp CCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHHHH
T ss_pred CCccCCcccCCcCCchHHHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHHHH
Confidence 68999999999999999999999999999999999999999999999999977666667999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceee
Q 025729 82 RVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (249)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~ 161 (249)
+.++++++.+++.|+++++++++++.+++++++++|.|++++++|||++++||+||| ++||+||.+||+|++.+++++
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D--~~gp~Ly~idp~G~~~~~~~~ 159 (244)
T 1ryp_G 82 RHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVD--KNGAHLYMLEPSGSYWGYKGA 159 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEE--TTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEe--CCcCEEEEECCCCCEEEeeEE
Confidence 999999999999999999999999999999999999999999999999999999999 579999999999999999999
Q ss_pred eecCCchHHHHHHHhh---hccCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEc---CCCEEEccHHHHHHHHHH
Q 025729 162 ATGRNSNSIREFLEKN---YKETSG-QETVKLAIRALLEVVES---GGKNIEVAVMTR---EHGLRQLEEAEIDAIVSE 230 (249)
Q Consensus 162 aiG~g~~~~~~~Le~~---~~~~~s-~eai~la~~al~~~~~~---~~~~iev~ii~~---~g~~~~l~~~ei~~~~~~ 230 (249)
|+|+|+++++++||+. |+++|+ +||++++++||..+.++ ++.+++|++|++ +| ++.+.++++.+..++
T Consensus 160 aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g-~~~~~~~~~~~~~~~ 237 (244)
T 1ryp_G 160 ATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNG-LHKFVKGDLLQEAID 237 (244)
T ss_dssp EESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTT-SEEECCTHHHHHHHH
T ss_pred EECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCC-eeeeChHHHHHHHHH
Confidence 9999999999999997 999999 99999999999999875 466899999998 66 777777776554433
No 17
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=4.2e-60 Score=410.12 Aligned_cols=227 Identities=34% Similarity=0.593 Sum_probs=216.7
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHH
Q 025729 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADA 81 (249)
Q Consensus 2 ~~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 81 (249)
++||+.+|+|||||||||||||++|+++|+|+|||+++||||||+|++.+.++. ++.+||++|++||+|+++|..+|+
T Consensus 4 ~~yd~~~t~fsP~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~--~~~~KI~~i~~~i~~~~aG~~aD~ 81 (263)
T 1iru_F 4 NQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELA--AHQKKILHVDNHIGISIAGLTADA 81 (263)
T ss_dssp CTTTSCTTCCCTTSCCHHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHHH
T ss_pred CCCCCCCccCCCCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEecccccccc--cchhcEEEEcCCEEEEEeCCHHHH
Confidence 479999999999999999999999999999999999999999999999998864 378999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceee
Q 025729 82 RVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (249)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~ 161 (249)
+.++++++.+++.|+++++++++++.+++++++++|.|+++.+.|||+|++|||||| ++||+||.+||+|++.+++++
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D--~~gp~Ly~idp~G~~~~~~~~ 159 (263)
T 1iru_F 82 RLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD--DMGPHIFQTCPSANYFDCRAM 159 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEE--TTEEEEEEECSSSCEEEESEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEc--CCCCEEEEECCCCCEEEeeEE
Confidence 999999999999999999999999999999999999999999999999999999999 478999999999999999999
Q ss_pred eecCCchHHHHHHHhhhcc--CCc-HHHHHHHHHHHHHHHhc----CCCcEEEEEEEcCCCEEEccHHHHHHHHHHHH
Q 025729 162 ATGRNSNSIREFLEKNYKE--TSG-QETVKLAIRALLEVVES----GGKNIEVAVMTREHGLRQLEEAEIDAIVSEIE 232 (249)
Q Consensus 162 aiG~g~~~~~~~Le~~~~~--~~s-~eai~la~~al~~~~~~----~~~~iev~ii~~~g~~~~l~~~ei~~~~~~i~ 232 (249)
|+|+|+.+++++||+.|++ +|+ +||++++++||..+.++ ++.+++|++|+++++|++++++||++++.++.
T Consensus 160 aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l~~~ei~~~~~~~~ 237 (263)
T 1iru_F 160 SIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLE 237 (263)
T ss_dssp EESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECSGGGHHHHTTCC
T ss_pred EcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEECCHHHHHHHHHHHh
Confidence 9999999999999999998 999 99999999999999854 46789999999985599999999999999885
No 18
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=4.3e-59 Score=407.64 Aligned_cols=224 Identities=33% Similarity=0.455 Sum_probs=209.4
Q ss_pred CCCCCCCcccCCCCcchhhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHH
Q 025729 2 ARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADA 81 (249)
Q Consensus 2 ~~yd~~~~~fspeG~l~Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~ 81 (249)
++||+++|+|||+|||||||||++|+++|+|+|||+++||||||+|++.+++++..++.+||++|++||+|+++|+.+|+
T Consensus 6 ~~yd~~~t~fSP~Grl~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG~~aD~ 85 (288)
T 3nzj_F 6 TGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDG 85 (288)
T ss_dssp CCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEECHHHH
T ss_pred CCccCCcccCCCCCchHHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecCcHHHH
Confidence 57999999999999999999999999999999999999999999999999977766688999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceee
Q 025729 82 RVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKAN 161 (249)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~ 161 (249)
+.|+++++.+++.|+++++++++++.+++++++++|.|++++++|||+|++||||||+ +||+||.+||+|++.+++++
T Consensus 86 ~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~--~Gp~Ly~iDp~G~~~~~~~~ 163 (288)
T 3nzj_F 86 RHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK--NGAHLYMLEPSGSYWGYKGA 163 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET--TEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC--CCCEEEEECCCCCEEEcCEE
Confidence 9999999999999999999999999999999999999999999999999999999994 78999999999999999999
Q ss_pred eecCCchHHHHHHHhh---hccCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEc--C-CCEEEccHHHHHHH
Q 025729 162 ATGRNSNSIREFLEKN---YKETSG-QETVKLAIRALLEVVES---GGKNIEVAVMTR--E-HGLRQLEEAEIDAI 227 (249)
Q Consensus 162 aiG~g~~~~~~~Le~~---~~~~~s-~eai~la~~al~~~~~~---~~~~iev~ii~~--~-g~~~~l~~~ei~~~ 227 (249)
|+|+|+++++++||+. |+++|+ +||++++++||..+.++ .+.+++|+||++ + +.++.++.+++++.
T Consensus 164 aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~~~~~ 239 (288)
T 3nzj_F 164 ATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEA 239 (288)
T ss_dssp EESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHHHHHH
T ss_pred EEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHHHHHH
Confidence 9999999999999999 999999 99999999999999876 356799999998 3 44556666666544
No 19
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=2.6e-52 Score=360.49 Aligned_cols=230 Identities=18% Similarity=0.266 Sum_probs=195.3
Q ss_pred cccCCCCcch-hhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHHHHHHHH
Q 025729 9 TVFSPDGHLF-QVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNR 87 (249)
Q Consensus 9 ~~fspeG~l~-Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~ 87 (249)
..|||||++. |||||++|+++|+|+|||+++||||||+|++ +++.+|||+|++||+|+++|..+|++.|+++
T Consensus 5 ~~~sPe~~~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r-------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~ 77 (259)
T 1q5q_A 5 YYASAEQIMRDRSELARKGIARGRSVVVLTFRDGVLFVAENP-------STALHKVSELYDRLGFAAVGKYNEFENLRRA 77 (259)
T ss_dssp ----CHHHHHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC-------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHH
Confidence 4689999995 9999999999999999999999999999998 2578999999999999999999999999999
Q ss_pred HHHHHHHhhhhcC-CCcCHHHHHHHHHH-HHHHhhccCCCCcceeeeEEEEee--CCCCcceEEEECCCCcee-cceeee
Q 025729 88 ARIECQSHRLTVE-DPVTVEYITRYIAG-LQQKYTQSGGVRPFGLSTLIVGFD--PYTGVPSLYQTDPSGTFS-AWKANA 162 (249)
Q Consensus 88 ~~~~~~~~~~~~~-~~i~~~~la~~l~~-~~~~~~~~~~~rP~~v~~iiaG~d--~~~~gp~Ly~idp~G~~~-~~~~~a 162 (249)
++.+++.|++.++ ++++++.+++++++ +.|.|+. +.|||+|++|||||| +.++||+||.+||+|++. ++++++
T Consensus 78 ~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~a 155 (259)
T 1q5q_A 78 GIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTE--QPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVV 155 (259)
T ss_dssp HHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEE
T ss_pred HHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEE
Confidence 9999999999998 59999999999999 7777873 689999999999999 324789999999999999 789999
Q ss_pred ecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHH-----hc--CCCcEEEEEEEcCC---CEEEccHHHHHHHHHHH
Q 025729 163 TGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVV-----ES--GGKNIEVAVMTREH---GLRQLEEAEIDAIVSEI 231 (249)
Q Consensus 163 iG~g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~-----~~--~~~~iev~ii~~~g---~~~~l~~~ei~~~~~~i 231 (249)
+|++++.++++||++|+++|+ +||++++++||..+. ++ ++.+++|++|+++| +|++++++||++++.++
T Consensus 156 iG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~sg~~iev~vi~~~~~~~~~~~l~~~ei~~~~~~~ 235 (259)
T 1q5q_A 156 MGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQLVPAE 235 (259)
T ss_dssp ESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTCC--------CCSSCSEEEEEETTSSSCCEEECCHHHHHTTSCCC
T ss_pred ECCChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccCCCCcEEEEEEECCCCcCCeEECCHHHHHHHHHHh
Confidence 999999999999999999999 999999999999887 43 57799999999985 69999999999999999
Q ss_pred HHHHHHHHHhhcCCCCC
Q 025729 232 EAEKAAAEAAKKAPPKE 248 (249)
Q Consensus 232 ~~~~~~~~~~~~~~~~~ 248 (249)
...+.++ ..++.|.+|
T Consensus 236 ~~~~~~~-~~~~~~~~~ 251 (259)
T 1q5q_A 236 PAAASES-APEPKPDTE 251 (259)
T ss_dssp -----------------
T ss_pred hhccccc-ccccCCCCC
Confidence 6665443 344444444
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=1.8e-49 Score=340.19 Aligned_cols=218 Identities=20% Similarity=0.304 Sum_probs=190.2
Q ss_pred CCCCcch-hhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcccccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHH
Q 025729 12 SPDGHLF-QVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVKLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARI 90 (249)
Q Consensus 12 speG~l~-Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~ 90 (249)
|||.-.- ++|||.+|+++|+|+|||+++||||||+|++ +++.+|||+|++||+|+++|..+|++.|.+.++.
T Consensus 8 ~p~~~~~~r~EYA~~av~~GtT~vgi~~kdgVVlaadkr-------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~ 80 (248)
T 3mi0_A 8 SPEQAMRERSELARKGIARAKSVVALAYAGGVLFVAENP-------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQ 80 (248)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCCEEEEEETTEEEEEEECC-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHH
T ss_pred CHHHhcccchHHHHHHHhCCCcEEEEEeCCEEEEEEeCC-------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHH
Confidence 4444332 6899999999999999999999999999998 3478999999999999999999999999999999
Q ss_pred HHHHhhhhcC-CCcCHHHHHHHHH-HHHHHhhccCCCCcceeeeEEEEeeC--CCCcceEEEECCCCceec-ceeeeecC
Q 025729 91 ECQSHRLTVE-DPVTVEYITRYIA-GLQQKYTQSGGVRPFGLSTLIVGFDP--YTGVPSLYQTDPSGTFSA-WKANATGR 165 (249)
Q Consensus 91 ~~~~~~~~~~-~~i~~~~la~~l~-~~~~~~~~~~~~rP~~v~~iiaG~d~--~~~gp~Ly~idp~G~~~~-~~~~aiG~ 165 (249)
+++.|+++|+ .+++++.|+++++ .+.|.|++ ++|||+|++||||||+ ..+||+||.+||+|++.+ ++++|+|+
T Consensus 81 ~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gs 158 (248)
T 3mi0_A 81 FADTRGYAYDRRDVTGRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGG 158 (248)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESS
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECc
Confidence 9999999999 9999999999999 77888987 6899999999999994 138999999999999995 99999999
Q ss_pred CchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHH-------h--cCCCcEEEEEEEcCC---CEEEccHHHHHHHHHHHH
Q 025729 166 NSNSIREFLEKNYKETSG-QETVKLAIRALLEVV-------E--SGGKNIEVAVMTREH---GLRQLEEAEIDAIVSEIE 232 (249)
Q Consensus 166 g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~-------~--~~~~~iev~ii~~~g---~~~~l~~~ei~~~~~~i~ 232 (249)
|++.++++||++|+++|+ +||++++++||..+. + .++++++|++|+++| .|++++++||+++++++.
T Consensus 159 gs~~a~~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~~~~~~iev~vv~~~g~~~~f~~l~~~ei~~~l~~~~ 238 (248)
T 3mi0_A 159 TTEPIANALKESYAENASLTDALRIAVAALRAGSADTSGGDQPTLGVASLEVAVLDANRPRRAFRRITGSALQALLVDQE 238 (248)
T ss_dssp CHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC------------CCTTEEEEEEETTSSSCCEEECCHHHHHHTC----
T ss_pred cHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCcccccCCCcEEEEEEECCCCcccEEECCHHHHHHHHHHcC
Confidence 999999999999999999 999999999999998 3 357899999999986 499999999999999987
Q ss_pred HHHHHH
Q 025729 233 AEKAAA 238 (249)
Q Consensus 233 ~~~~~~ 238 (249)
..+-+.
T Consensus 239 ~~~~~~ 244 (248)
T 3mi0_A 239 SPQSDG 244 (248)
T ss_dssp ------
T ss_pred CCcccc
Confidence 666554
No 21
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1e-47 Score=324.14 Aligned_cols=206 Identities=25% Similarity=0.385 Sum_probs=187.2
Q ss_pred CCcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHH
Q 025729 30 GNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYI 108 (249)
Q Consensus 30 G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (249)
|+|+|||+++||||||+|++.+. .++.+++.+||++|++||+|+++|..+|++.++++++.+++.|+++++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 79999999999999999999988 46778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecce-eeeecCCchHHHHHHHhhhccCCc-HHH
Q 025729 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK-ANATGRNSNSIREFLEKNYKETSG-QET 186 (249)
Q Consensus 109 a~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~-~~aiG~g~~~~~~~Le~~~~~~~s-~ea 186 (249)
++++++++|.+ +.|||+|++||||||+ ++||+||.+||+|++.+++ ++|+|+|+++++++||+.|+++|+ +||
T Consensus 81 a~~l~~~~~~~----~~~P~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea 155 (219)
T 3h4p_a 81 ATLLSNILHSS----RMFPFLTQIIIGGYDL-LEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEG 155 (219)
T ss_dssp HHHHHHHHHHT----TTTTCCCCCEEEEEET-TTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHH
T ss_pred HHHHHHHHHHh----cCCCceEEEEEEEEeC-CCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHH
Confidence 99999999876 3689999999999996 5899999999999999999 999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEccHHHHHHHHHHHHHHHHHHHHh
Q 025729 187 VKLAIRALLEVVES---GGKNIEVAVMTREHGLRQLEEAEIDAIVSEIEAEKAAAEAA 241 (249)
Q Consensus 187 i~la~~al~~~~~~---~~~~iev~ii~~~g~~~~l~~~ei~~~~~~i~~~~~~~~~~ 241 (249)
++++++||..+.++ ++++++|++|+++| |++++++||++++++++.++..++..
T Consensus 156 ~~la~~al~~~~~rd~~sg~~i~v~vi~~~g-~~~l~~~ei~~~l~~~~~~~~~~~~~ 212 (219)
T 3h4p_a 156 IKLALNALKSAMERDTFSGNGISLAVITKDG-VKIFEDEEIEKILDSMKAKPKKKTTK 212 (219)
T ss_dssp HHHHHHHHHHHHTSCSSCCSCCCEEEEETTE-EEECCHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC-eEEcCHHHHHHHHHHhhcccccccch
Confidence 99999999999976 46799999999997 99999999999999998777665544
No 22
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=6.1e-46 Score=312.91 Aligned_cols=200 Identities=25% Similarity=0.398 Sum_probs=184.2
Q ss_pred HHHhcCCcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCc
Q 025729 25 EAVRKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPV 103 (249)
Q Consensus 25 ~a~~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i 103 (249)
+++++|+|+|||+++||||||+|++.+. +++.+++.+||++|++|++|+++|..+|++.++++++.+++.|++++++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (217)
T 1yar_H 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNM 82 (217)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 4678999999999999999999999988 688888999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhccCCc
Q 025729 104 TVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG 183 (249)
Q Consensus 104 ~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s 183 (249)
+++.+++++++.+|.+ +.|||++++|||||| +||+||.+||+|++.+++++|+|+|+++++++||+.|+++|+
T Consensus 83 ~v~~la~~l~~~~~~~----r~rp~~v~~lvaG~D---~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s 155 (217)
T 1yar_H 83 PIEAVATLLSNMLNQV----KYMPYMVQLLVGGID---TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMT 155 (217)
T ss_dssp CHHHHHHHHHHHHHHT----TTSCCCEEEEEEEES---SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCC
T ss_pred CHHHHHHHHHHHHHhc----CCCCceEEEEEEEEC---CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCC
Confidence 9999999999999764 378999999999998 579999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHHHHHHHhc---CCCcEEEEEEEc-CCCEEEccHHHHHHHHHHHH
Q 025729 184 -QETVKLAIRALLEVVES---GGKNIEVAVMTR-EHGLRQLEEAEIDAIVSEIE 232 (249)
Q Consensus 184 -~eai~la~~al~~~~~~---~~~~iev~ii~~-~g~~~~l~~~ei~~~~~~i~ 232 (249)
+||++++++||..+.++ ++++++|++|++ +| +++++++||++++.+++
T Consensus 156 ~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g-~~~~~~~ei~~~~~~~~ 208 (217)
T 1yar_H 156 VDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDG-YVQLPTDQIESRIRKLG 208 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTE-EEECCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCC-EEEcCHHHHHHHHHHHH
Confidence 99999999999999875 467899999999 76 99999999999998774
No 23
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=4.3e-46 Score=325.27 Aligned_cols=210 Identities=17% Similarity=0.305 Sum_probs=190.6
Q ss_pred hHHHHHhcCCcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcC
Q 025729 22 YALEAVRKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVE 100 (249)
Q Consensus 22 ya~~a~~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 100 (249)
++..++++|+|+|||+++||||||+|+|.+. .++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++
T Consensus 67 ~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~ 146 (287)
T 3nzj_K 67 DCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREK 146 (287)
T ss_dssp ---------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 7888999999999999999999999999987 677888999999999999999999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhcc
Q 025729 101 DPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE 180 (249)
Q Consensus 101 ~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~ 180 (249)
++++++.+++++++++|.+++ +||++++||||||+ ++||+||.+||.|++.+++++|+|+|+.+++++||+.|++
T Consensus 147 ~~isv~~la~~ls~~l~~~r~----~p~~v~~lvaG~D~-~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~ 221 (287)
T 3nzj_K 147 ERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTR-KEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKW 221 (287)
T ss_dssp SCCCHHHHHHHHHHHHHHTTT----SCCCEEEEEEEEET-TTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCT
T ss_pred CCCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcC-CCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcC
Confidence 999999999999999988875 49999999999997 6899999999999999999999999999999999999999
Q ss_pred CCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEccHHHHHHHHHHHHHHHHH
Q 025729 181 TSG-QETVKLAIRALLEVVES---GGKNIEVAVMTREHGLRQLEEAEIDAIVSEIEAEKAA 237 (249)
Q Consensus 181 ~~s-~eai~la~~al~~~~~~---~~~~iev~ii~~~g~~~~l~~~ei~~~~~~i~~~~~~ 237 (249)
+|+ +||++++++||..+.++ ++++++|++|+++| |++++++||++++.++++++.+
T Consensus 222 dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg-~~~l~~~ev~~~l~~~~e~~~~ 281 (287)
T 3nzj_K 222 DLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDG-WIYHGNHDVGELFWKVKEEEGS 281 (287)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE-EEEEEEEEHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCC-EEEeCHHHHHHHHHHHHHhhcc
Confidence 999 99999999999999875 46899999999997 9999999999999999776543
No 24
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=4.8e-46 Score=325.70 Aligned_cols=231 Identities=16% Similarity=0.182 Sum_probs=175.5
Q ss_pred CCCCCCCcccCCCCcc-----hh--hhhHHHHHhcCCcEEEEEeCCEEEEEEeccCccc-ccccCcccceEEecCcEEEE
Q 025729 2 ARYDRAITVFSPDGHL-----FQ--VEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAVK-LQDSRMVRKIVSLDNHIALA 73 (249)
Q Consensus 2 ~~yd~~~~~fspeG~l-----~Q--veya~~a~~~G~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~i~~~i~~~ 73 (249)
.+|+..+...+||.-. +| +|||++ +++|+|+|||+++||||||+|++.+.+ ++.+++.+||++|++|++|+
T Consensus 23 ~~f~~~~~~~~~~~l~~~~~~~~~~~~ya~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~ 101 (291)
T 2jay_A 23 SSFTDFLRRQAPELLPASISGGAPLAGGDAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATG 101 (291)
T ss_dssp ------------------------------------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEE
T ss_pred ccHHHHhhhcChhhccccccccCcCcccccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEE
Confidence 3566667777776653 33 689999 999999999999999999999999884 77788999999999999999
Q ss_pred EeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCc-----ceEEE
Q 025729 74 CAGLKADARVLVNRARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGV-----PSLYQ 148 (249)
Q Consensus 74 ~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~g-----p~Ly~ 148 (249)
++|..+|++.++++++.+++.|++.++.+++++.+++++++++|.+++ ..+|||+|++||||||+ +++ |+||.
T Consensus 102 ~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~-~~~rpf~v~~lvaG~D~-~g~~~~~~p~Ly~ 179 (291)
T 2jay_A 102 IAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-AAMQGLLALPLLAGYDI-HASDPQSAGRIVS 179 (291)
T ss_dssp EESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-HHHHTCCCEEEEEEECT-TCSCSTTCEEEEE
T ss_pred EcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-hhccccceeEEEEEEeC-CCCcCCCCCEEEE
Confidence 999999999999999999999999999999999999999999998875 45799999999999996 555 99999
Q ss_pred ECCCCcee--cceeeeecCCchHHHHHHHhhhccCCc-HHHHHHHHHHHHHHHhcC--CCcE--------EEEEEEcCCC
Q 025729 149 TDPSGTFS--AWKANATGRNSNSIREFLEKNYKETSG-QETVKLAIRALLEVVESG--GKNI--------EVAVMTREHG 215 (249)
Q Consensus 149 idp~G~~~--~~~~~aiG~g~~~~~~~Le~~~~~~~s-~eai~la~~al~~~~~~~--~~~i--------ev~ii~~~g~ 215 (249)
+||+|++. +++++|+|+|+.+++++||+.|+++|+ +||++++++||..+.+++ ..++ +|++|+++|
T Consensus 180 iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg- 258 (291)
T 2jay_A 180 FDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADG- 258 (291)
T ss_dssp ECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTE-
T ss_pred ECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCC-
Confidence 99999999 889999999999999999999999999 999999999999988753 2334 699999997
Q ss_pred EEEccHHHHHHHHHHHHHHHH
Q 025729 216 LRQLEEAEIDAIVSEIEAEKA 236 (249)
Q Consensus 216 ~~~l~~~ei~~~~~~i~~~~~ 236 (249)
+++++++||++++.++.+.+.
T Consensus 259 ~~~l~~~ei~~~~~~~~~~~~ 279 (291)
T 2jay_A 259 AVDVPESRIAELARAIIESRS 279 (291)
T ss_dssp EEECCHHHHHHHHHHC-----
T ss_pred eEEcCHHHHHHHHHHHHHhhh
Confidence 999999999999999866543
No 25
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=1.2e-45 Score=307.80 Aligned_cols=194 Identities=28% Similarity=0.426 Sum_probs=184.0
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHHH
Q 025729 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|++.++ +++.+++.+||++|++|++|+++|..+|++.++++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 6899999999999999999988 688888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecce-eeeecCCchHHHHHHHhhhccCCc-HHHH
Q 025729 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK-ANATGRNSNSIREFLEKNYKETSG-QETV 187 (249)
Q Consensus 110 ~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~-~~aiG~g~~~~~~~Le~~~~~~~s-~eai 187 (249)
+++++.+|.+ +.|||++++|||||| ++||+||.+||+|++.+++ ++|+|+|+++++++||+.|+++|+ +||+
T Consensus 81 ~~l~~~~~~~----r~rp~~~~~lvaG~D--~~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~ 154 (202)
T 1j2q_H 81 TLTSNLLNSY----RYFPYLVQLLIGGID--SEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAV 154 (202)
T ss_dssp HHHHHHHHHT----TTSCCCEEEEEEEEE--TTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHH
T ss_pred HHHHHHHHhh----CCCCceEEEEEEEEe--CCCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHH
Confidence 9999999764 378999999999999 4689999999999999999 999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEccHHHHHHHHHHH
Q 025729 188 KLAIRALLEVVES---GGKNIEVAVMTREHGLRQLEEAEIDAIVSEI 231 (249)
Q Consensus 188 ~la~~al~~~~~~---~~~~iev~ii~~~g~~~~l~~~ei~~~~~~i 231 (249)
+++++||..+.++ ++++++|++|+++| +++++++||++++.++
T Consensus 155 ~la~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~l~~~ei~~~~~~~ 200 (202)
T 1j2q_H 155 ELAVRAIYSAMKRDSASGDGIDVVKITEDE-FYQYSPEEVEQILAKF 200 (202)
T ss_dssp HHHHHHHHHHHTTCTTSCSCEEEEEECSSC-EEECHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEEeCCC-eEEeCHHHHHHHHHHh
Confidence 9999999999875 46789999999997 9999999999998776
No 26
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=6.6e-46 Score=325.11 Aligned_cols=213 Identities=19% Similarity=0.212 Sum_probs=194.0
Q ss_pred HHHHHhcCCcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCC
Q 025729 23 ALEAVRKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVED 101 (249)
Q Consensus 23 a~~a~~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 101 (249)
|.+|+++|+|+|||+++||||||+|++.+. +++.+++.+|||+|++|++|+++|..+|++.++++++.+++.|++++++
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~ 137 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGV 137 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCC
Confidence 889999999999999999999999999998 7888889999999999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCc-----ceEEEECCCCceecc--eeeeecCCchHHHHHH
Q 025729 102 PVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGV-----PSLYQTDPSGTFSAW--KANATGRNSNSIREFL 174 (249)
Q Consensus 102 ~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~g-----p~Ly~idp~G~~~~~--~~~aiG~g~~~~~~~L 174 (249)
+++++.++++|++++|.++++. +|||+|++||+|||+ +++ |+||.+||+|++.++ +++|+|+|+.+++++|
T Consensus 138 ~isv~~la~~la~~l~~~~~~~-~rp~~v~lLvaG~D~-~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~L 215 (294)
T 1q5r_H 138 PLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDL-DADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSAL 215 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH-TTTTCEEEEEEEECT-TCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhh-cCCcceEEEEEEEeC-CCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHH
Confidence 9999999999999999988764 899999999999996 546 999999999999999 8999999999999999
Q ss_pred HhhhccCCc-HHHHHHHHHHHHHHHhcC---C--CcE-----EEEEEEcCCCEEEccHHHHHHHHHHHHHHHHHH
Q 025729 175 EKNYKETSG-QETVKLAIRALLEVVESG---G--KNI-----EVAVMTREHGLRQLEEAEIDAIVSEIEAEKAAA 238 (249)
Q Consensus 175 e~~~~~~~s-~eai~la~~al~~~~~~~---~--~~i-----ev~ii~~~g~~~~l~~~ei~~~~~~i~~~~~~~ 238 (249)
|+.|+++|+ +||++++++||..+.+++ + +++ +|++|+++| +++++++|+++++.++.+++.+.
T Consensus 216 e~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g-~~~l~~~ei~~~l~~i~~~~~~~ 289 (294)
T 1q5r_H 216 KKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG-AVHVSEETTSELARRIVAERTEQ 289 (294)
T ss_dssp HHHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE-EEECCHHHHHHHHHHHCC-----
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCC-EEEcCHHHHHHHHHHHHHHhhhC
Confidence 999999999 999999999999998763 2 235 999999997 99999999999999997665543
No 27
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=3.7e-45 Score=307.01 Aligned_cols=200 Identities=17% Similarity=0.316 Sum_probs=189.0
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHHH
Q 025729 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|+|.+. +++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 6899999999999999999998 688888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025729 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (249)
Q Consensus 110 ~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s-~eai~ 188 (249)
+++++.+|.|+++ ||++++||||||+ ++||+||.+||+|++.+++++|+|+|+++++++||++|+++|| +||++
T Consensus 81 ~~l~~~~~~~~~~----p~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~ 155 (212)
T 1ryp_L 81 KILSNLVYQYKGA----GLSMGTMICGYTR-KEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALY 155 (212)
T ss_dssp HHHHHHHHHTTTS----CCCBEEEEEEEET-TTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHhhCCC----CceEEEEEEEEeC-CCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHH
Confidence 9999999998863 8999999999996 5799999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEccHHHHHHHHHHHHHHHH
Q 025729 189 LAIRALLEVVES---GGKNIEVAVMTREHGLRQLEEAEIDAIVSEIEAEKA 236 (249)
Q Consensus 189 la~~al~~~~~~---~~~~iev~ii~~~g~~~~l~~~ei~~~~~~i~~~~~ 236 (249)
++++||..+.++ ++.+++|++|+++| +++++++||++++.+++++++
T Consensus 156 la~~al~~~~~rd~~s~~~i~v~vi~~~g-~~~~~~~ei~~~~~~~~~~~~ 205 (212)
T 1ryp_L 156 LGKRSILAAAHRDAYSGGSVNLYHVTEDG-WIYHGNHDVGELFWKVKEEEG 205 (212)
T ss_dssp HHHHHHHHHHHHBTTCCSEEEEEEEETTE-EEEEEEEEHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccccCCceEEEEEcCCc-eEEECHHHHHHHHHHHHHhhh
Confidence 999999999875 47899999999997 999999999999998865543
No 28
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=1.1e-44 Score=308.74 Aligned_cols=204 Identities=20% Similarity=0.218 Sum_probs=189.9
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHHH
Q 025729 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|++.+. +++.+++.+||++|++|++|+++|..+|++.++++++.+++.|+++++++++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 6899999999999999999998 788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCc-----ceEEEECCCCceecc--eeeeecCCchHHHHHHHhhhccCC
Q 025729 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGV-----PSLYQTDPSGTFSAW--KANATGRNSNSIREFLEKNYKETS 182 (249)
Q Consensus 110 ~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~g-----p~Ly~idp~G~~~~~--~~~aiG~g~~~~~~~Le~~~~~~~ 182 (249)
++|++++|.++++. +|||+|++||||||+ +++ |+||.+||+|++.++ +++|+|+|+.+++++||+.|+++|
T Consensus 81 ~~l~~~~~~~~~~~-~rp~~v~~lvaG~D~-~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~m 158 (235)
T 1q5q_H 81 NRLASMVRGNLGAA-MQGLAVVPLLVGYDL-DADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDS 158 (235)
T ss_dssp HHHHHHHHTTHHHH-TTTCCEEEEEEEECT-TCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHhh-hcccceEEEEEEEEC-CCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCC
Confidence 99999999988764 899999999999996 546 999999999999999 999999999999999999999999
Q ss_pred c-HHHHHHHHHHHHHHHhcC---CC--cE-----EEEEEEcCCCEEEccHHHHHHHHHHHHHHHHH
Q 025729 183 G-QETVKLAIRALLEVVESG---GK--NI-----EVAVMTREHGLRQLEEAEIDAIVSEIEAEKAA 237 (249)
Q Consensus 183 s-~eai~la~~al~~~~~~~---~~--~i-----ev~ii~~~g~~~~l~~~ei~~~~~~i~~~~~~ 237 (249)
+ +||++++++||..+.+++ ++ ++ +|++|+++| +++++++|+++++.++.+++.+
T Consensus 159 s~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g-~~~l~~~ei~~~~~~~~~~~~~ 223 (235)
T 1q5q_H 159 DEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG-AVHVSEETTSELARRIVAERTE 223 (235)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE-EEECCHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCC-eEEeCHHHHHHHHHHHHHHHhh
Confidence 9 999999999999998753 22 23 999999997 9999999999999999776655
No 29
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=6.1e-45 Score=303.87 Aligned_cols=196 Identities=15% Similarity=0.270 Sum_probs=185.6
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHHH
Q 025729 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|++.++ +++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 6899999999999999999998 688888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025729 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (249)
Q Consensus 110 ~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s-~eai~ 188 (249)
+++++.+|.+++ +||++++|||||| ++||+||.+||+|++.+++++|+|+|+++++++||++|+++|+ +||++
T Consensus 81 ~~l~~~~~~~r~----~~~~v~~lvaG~D--~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~ 154 (204)
T 1iru_L 81 KLLANMVYQYKG----MGLSMGTMICGWD--KRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYD 154 (204)
T ss_dssp HHHHHHHHTTTT----SCCCBEEEEEEEC--SSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHH
T ss_pred HHHHHHHHHhCC----CCeeEEEEEEEEe--CCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHH
Confidence 999999988754 5899999999999 4789999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEccHHHHHHHHHHHHH
Q 025729 189 LAIRALLEVVES---GGKNIEVAVMTREHGLRQLEEAEIDAIVSEIEA 233 (249)
Q Consensus 189 la~~al~~~~~~---~~~~iev~ii~~~g~~~~l~~~ei~~~~~~i~~ 233 (249)
++++||..+.++ ++++++|++|+++| ++.++++||++++++++.
T Consensus 155 l~~~al~~~~~rd~~s~~~i~v~vi~~~g-~~~l~~~ei~~~~~~~~~ 201 (204)
T 1iru_L 155 LARRAIYQATYRDAYSGGAVNLYHVREDG-WIRVSSDNVADLHEKYSG 201 (204)
T ss_dssp HHHHHHHHHHHHBTTCCSEEEEEEECSSC-EEEEEEEEHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCccCCCceEEEEEeCCc-eEEeCHHHHHHHHHHhcc
Confidence 999999999864 57899999999997 999999999999998843
No 30
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=2.8e-45 Score=309.15 Aligned_cols=197 Identities=16% Similarity=0.164 Sum_probs=184.6
Q ss_pred HHHhcCCcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhh-hcCCC
Q 025729 25 EAVRKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRL-TVEDP 102 (249)
Q Consensus 25 ~a~~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-~~~~~ 102 (249)
+|+++|+|+|||+++||||||+|++.+. .++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++ +++++
T Consensus 3 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (219)
T 1iru_N 3 NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHS 82 (219)
T ss_dssp SCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCC
T ss_pred CCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 5788999999999999999999999987 677888999999999999999999999999999999999999998 99999
Q ss_pred cCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhcc--
Q 025729 103 VTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKE-- 180 (249)
Q Consensus 103 i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~-- 180 (249)
++++.+++++++.++ ++++++|||++++||||||+ +||+||.+||+|++.+++++|+|+|+++++++||+.|++
T Consensus 83 ~~v~~la~~l~~~ly--~~r~~~~P~~v~~lvaG~D~--~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ 158 (219)
T 1iru_N 83 YSPRAIHSWLTRAMY--SRRSKMNPLWNTMVIGGYAD--GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQP 158 (219)
T ss_dssp CCHHHHHHHHHHHHH--HHHHTTCCCCEEEEEEEEET--TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCS
T ss_pred CCHHHHHHHHHHHHH--HhcccCCCceEEEEEEEEEC--CCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCC
Confidence 999999999999995 45567899999999999994 699999999999999999999999999999999999999
Q ss_pred CCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEccHHHHHH
Q 025729 181 TSG-QETVKLAIRALLEVVES---GGKNIEVAVMTREHGLRQLEEAEIDA 226 (249)
Q Consensus 181 ~~s-~eai~la~~al~~~~~~---~~~~iev~ii~~~g~~~~l~~~ei~~ 226 (249)
+|+ +||++++++||..+.++ ++++++|++|+++| ++.+++++|+.
T Consensus 159 ~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g-~~~~~~~~i~~ 207 (219)
T 1iru_N 159 VLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKG-VEIEGPLSTET 207 (219)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE-EEEEEEECCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCC-EEEcCCeeccc
Confidence 999 99999999999999875 47899999999998 99999888754
No 31
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=2e-44 Score=300.97 Aligned_cols=193 Identities=18% Similarity=0.293 Sum_probs=181.8
Q ss_pred CcEEEEEeCCEEEEEEeccCccc-ccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHHH
Q 025729 31 NAAVGVRGTDIVVLGVEKKSAVK-LQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|+|.+++ ++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999986 77888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025729 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (249)
Q Consensus 110 ~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s-~eai~ 188 (249)
+++++.+|.|++ ||++++|+||||+ ++||+||.+||+|++.+++++++|+|+++++++||++|+++|+ +||++
T Consensus 81 ~~l~~~~~~~~~-----p~~~~~lvaG~D~-~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~ 154 (205)
T 1iru_H 81 SLFKEMCYRYRE-----DLMAGIIIAGWDP-QEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQ 154 (205)
T ss_dssp HHHHHHHHHTTT-----TCCEEEEEEEEET-TTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHhcCc-----CccEEEEEEEEeC-CCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 999999998874 9999999999996 5799999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEEcCCC-EEEccHHHHHHHHH
Q 025729 189 LAIRALLEVVES---GGKNIEVAVMTREHG-LRQLEEAEIDAIVS 229 (249)
Q Consensus 189 la~~al~~~~~~---~~~~iev~ii~~~g~-~~~l~~~ei~~~~~ 229 (249)
++++||..+.++ ++++++|++|+++|. ++.++++||+++++
T Consensus 155 l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 199 (205)
T 1iru_H 155 FTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAV 199 (205)
T ss_dssp HHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCC
T ss_pred HHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHh
Confidence 999999999875 478999999999974 67899999977654
No 32
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=5.9e-45 Score=309.99 Aligned_cols=199 Identities=14% Similarity=0.239 Sum_probs=185.9
Q ss_pred HHHhcCCcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhh-----h
Q 025729 25 EAVRKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRL-----T 98 (249)
Q Consensus 25 ~a~~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~-----~ 98 (249)
+|+++|+|+|||+++||||||+|++.+. .++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++ +
T Consensus 3 ~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (233)
T 1ryp_N 3 QPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLAD 82 (233)
T ss_dssp CCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTT
T ss_pred ccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 5788999999999999999999999987 677888999999999999999999999999999999999999999 8
Q ss_pred cCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhh
Q 025729 99 VEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNY 178 (249)
Q Consensus 99 ~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~ 178 (249)
++++++++.+++++++.+ |+++.++|||++++||||||+ ++||+||.+||.|++.+++++|+|+|+.+++++||+.|
T Consensus 83 ~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~-~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~ 159 (233)
T 1ryp_N 83 AEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQS-NGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV 159 (233)
T ss_dssp TTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECT-TSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTC
T ss_pred cCCCCCHHHHHHHHHHHH--HHhcCCCCCceEEEEEEEEcC-CCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhh
Confidence 999999999999999999 455667899999999999996 56999999999999999999999999999999999999
Q ss_pred cc-----CCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcC-CCEEEccHHHHHHH
Q 025729 179 KE-----TSG-QETVKLAIRALLEVVES---GGKNIEVAVMTRE-HGLRQLEEAEIDAI 227 (249)
Q Consensus 179 ~~-----~~s-~eai~la~~al~~~~~~---~~~~iev~ii~~~-g~~~~l~~~ei~~~ 227 (249)
++ +|+ +||++++++||..+.++ ++++++|++|+++ | ++.++++||+.+
T Consensus 160 ~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g-~~~~~~~~i~~~ 217 (233)
T 1ryp_N 160 DRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTG-LTFKKNLQVENM 217 (233)
T ss_dssp SSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTE-EEEEEEEECCSC
T ss_pred ccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCC-eEEcChHhcccc
Confidence 99 999 99999999999999875 4789999999999 6 999998887654
No 33
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=2e-43 Score=293.33 Aligned_cols=189 Identities=21% Similarity=0.281 Sum_probs=175.1
Q ss_pred CCcEEEEEeCCEEEEEEeccCcccc-cccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHH
Q 025729 30 GNAAVGVRGTDIVVLGVEKKSAVKL-QDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYI 108 (249)
Q Consensus 30 G~t~igi~~~dgVvla~d~~~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (249)
++|+|||+++||||||+|++.+.++ +.+++.+||++|++|++++++|..+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (198)
T 1ryp_K 1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAV 80 (198)
T ss_dssp CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 5899999999999999999998754 446789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhccCCc-HHHH
Q 025729 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETV 187 (249)
Q Consensus 109 a~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s-~eai 187 (249)
++++++.++.+++. .+||++++||||||+.++||+||.+||+|++.+++++|+|+|+++++++||+.|+++|+ +||+
T Consensus 81 a~~l~~~l~~~~~~--r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~ 158 (198)
T 1ryp_K 81 SSFVRQELAKSIRS--RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGL 158 (198)
T ss_dssp HHHHHHHHHHHTTS--SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHH
T ss_pred HHHHHHHHHHhccc--CCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHH
Confidence 99999999988742 35999999999999423789999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEccH
Q 025729 188 KLAIRALLEVVES---GGKNIEVAVMTREHGLRQLEE 221 (249)
Q Consensus 188 ~la~~al~~~~~~---~~~~iev~ii~~~g~~~~l~~ 221 (249)
+++++||..+.++ ++++++|++|+++| ++++++
T Consensus 159 ~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~~~~ 194 (198)
T 1ryp_K 159 DLLKLCVQELEKRMPMDFKGVIVKIVDKDG-IRQVDD 194 (198)
T ss_dssp HHHHHHHHHHHHHCSBCCCCEEEEEEETTE-EEEECC
T ss_pred HHHHHHHHHHHHhCccCCCceEEEEEcCCC-EEEecc
Confidence 9999999999875 47899999999997 888765
No 34
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=2e-43 Score=294.93 Aligned_cols=184 Identities=18% Similarity=0.269 Sum_probs=174.7
Q ss_pred HHHHhcCCcEEEEEeCCEEEEEEeccCccc-ccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCC
Q 025729 24 LEAVRKGNAAVGVRGTDIVVLGVEKKSAVK-LQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDP 102 (249)
Q Consensus 24 ~~a~~~G~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 102 (249)
.+|+++|+|+|||+++||||||+|+|.+.+ ++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|++++++
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~- 81 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT- 81 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 578899999999999999999999999985 777889999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhccCC
Q 025729 103 VTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETS 182 (249)
Q Consensus 103 i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~ 182 (249)
++++.+++++++.+|.|+++ |++++||||||+ ++||+||.+||+|++.+++++|+|+|+++++++||++|+++|
T Consensus 82 ~~v~~la~~l~~~~~~~~~~-----~~~~~lvaG~D~-~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ 155 (205)
T 1ryp_H 82 PSTETAASVFKELCYENKDN-----LTAGIIVAGYDD-KNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENM 155 (205)
T ss_dssp CCHHHHHHHHHHHHHHTTTT-----CCEEEEEEEEET-TTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTC
T ss_pred CCHHHHHHHHHHHHHhhhcC-----ceEEEEEEEEec-CCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCC
Confidence 99999999999999998752 999999999996 578999999999999999999999999999999999999999
Q ss_pred c-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCC
Q 025729 183 G-QETVKLAIRALLEVVES---GGKNIEVAVMTREH 214 (249)
Q Consensus 183 s-~eai~la~~al~~~~~~---~~~~iev~ii~~~g 214 (249)
+ +||++++++||..+.++ ++++++|++|+++|
T Consensus 156 s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g 191 (205)
T 1ryp_H 156 SKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAG 191 (205)
T ss_dssp CHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE
T ss_pred CHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCC
Confidence 9 99999999999999875 47899999999998
No 35
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=8.4e-43 Score=292.76 Aligned_cols=185 Identities=18% Similarity=0.370 Sum_probs=172.6
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccCcccc-cccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCH
Q 025729 27 VRKGNAAVGVRGTDIVVLGVEKKSAVKL-QDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTV 105 (249)
Q Consensus 27 ~~~G~t~igi~~~dgVvla~d~~~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 105 (249)
+++|+|+|||+++||||||+|++.+.++ +.+++.+||++|++|++|+++|..+|++.++++++.+++.|++++++++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 85 (213)
T 1iru_M 6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTT 85 (213)
T ss_dssp CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 4689999999999999999999999855 455789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhh--------
Q 025729 106 EYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKN-------- 177 (249)
Q Consensus 106 ~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~-------- 177 (249)
+.+++++++.+ |+++ .|||++++||||||+ +++|+||.+||.|++.+++++|+|+|+++++++||+.
T Consensus 86 ~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~-~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~ 160 (213)
T 1iru_M 86 GAIAAMLSTIL--YSRR--FFPYYVYNIIGGLDE-EGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQN 160 (213)
T ss_dssp HHHHHHHHHHH--HHTT--TSCCCEEEEEEEECT-TSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSS
T ss_pred HHHHHHHHHHH--HhhC--CCCceEEEEEEEEcC-CCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccc
Confidence 99999999999 5654 799999999999996 5679999999999999999999999999999999999
Q ss_pred -hccCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEE
Q 025729 178 -YKETSG-QETVKLAIRALLEVVES---GGKNIEVAVMTREHGLR 217 (249)
Q Consensus 178 -~~~~~s-~eai~la~~al~~~~~~---~~~~iev~ii~~~g~~~ 217 (249)
|+++|+ +||++++++||..+.++ ++++++|++|+++| ++
T Consensus 161 ~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~ 204 (213)
T 1iru_M 161 VEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEG-IR 204 (213)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTE-EE
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCC-eE
Confidence 888999 99999999999999875 47899999999997 54
No 36
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=8.7e-43 Score=300.82 Aligned_cols=192 Identities=22% Similarity=0.265 Sum_probs=171.7
Q ss_pred HHHHHhcCCcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCC
Q 025729 23 ALEAVRKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVED 101 (249)
Q Consensus 23 a~~a~~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 101 (249)
+.||+++|+|+|||+++||||||+|++.+. .++.+++.+||++|++||+|+++|..+|++.+.++++.+++.|++++++
T Consensus 22 ~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~ 101 (261)
T 3nzj_H 22 QPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSR 101 (261)
T ss_dssp --------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCC
Confidence 468899999999999999999999999988 5677889999999999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhccC
Q 025729 102 PVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKET 181 (249)
Q Consensus 102 ~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~ 181 (249)
+++++.+++++++.++.| .|||++++||||||+ +||+||.+||+|++.+++++|+|+|+..++++||++|+++
T Consensus 102 ~~~v~~~a~~l~~~l~~~-----~~~~gv~llvaG~D~--~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ 174 (261)
T 3nzj_H 102 EPRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDP--TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQD 174 (261)
T ss_dssp CCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEET--TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSS
T ss_pred CCCHHHHHHHHHHHHHHh-----cCcccEEEEEEEEeC--CCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccC
Confidence 999999999999988654 369999999999994 6899999999999999999999999999999999999999
Q ss_pred Cc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEccH
Q 025729 182 SG-QETVKLAIRALLEVVES---GGKNIEVAVMTREHGLRQLEE 221 (249)
Q Consensus 182 ~s-~eai~la~~al~~~~~~---~~~~iev~ii~~~g~~~~l~~ 221 (249)
|+ +||++++++||..+..+ ++++++|++|+++|.++.+.+
T Consensus 175 ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~ 218 (261)
T 3nzj_H 175 LTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRN 218 (261)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEecc
Confidence 99 99999999999999865 478999999999986665443
No 37
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=2.2e-44 Score=312.02 Aligned_cols=205 Identities=13% Similarity=0.228 Sum_probs=187.9
Q ss_pred hhhhHHHHHhcCCcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhh
Q 025729 19 QVEYALEAVRKGNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRL 97 (249)
Q Consensus 19 Qveya~~a~~~G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 97 (249)
..+.+++|+++|+|+|||+++||||||+|++.+. .++.+++.+||++|++||+|+++|..+|++.|+++++.+++.|++
T Consensus 30 ~~~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~ 109 (266)
T 1g0u_M 30 PMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAY 109 (266)
T ss_dssp ----CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhh
Confidence 3566778899999999999999999999999987 577788999999999999999999999999999999999999998
Q ss_pred -----hcCCCcCHHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHH
Q 025729 98 -----TVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIRE 172 (249)
Q Consensus 98 -----~~~~~i~~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~ 172 (249)
.++++++++.+++++++.+ |+++.++|||+|++||||||+ +++|+||.+||.|++.+++++|+|+|+.++++
T Consensus 110 ~~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~ 186 (266)
T 1g0u_M 110 DNPLADAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQS-NGDQFLRYVNLLGVTYSSPTLATGFGAHMANP 186 (266)
T ss_dssp TCTTTTTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECT-TSCEEEEEEETTCCEECCSEEECTHHHHTHHH
T ss_pred ccchhhcCCCCCHHHHHHHHHHHH--HHhccCCCCceEEEEEEEEcC-CCCEEEEEECCCCCEEeCCEEEEccCHHHHHH
Confidence 8999999999999999999 555667899999999999996 56999999999999999999999999999999
Q ss_pred HHHhhhcc-----CCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcC-CCEEEccHHHHHHH
Q 025729 173 FLEKNYKE-----TSG-QETVKLAIRALLEVVES---GGKNIEVAVMTRE-HGLRQLEEAEIDAI 227 (249)
Q Consensus 173 ~Le~~~~~-----~~s-~eai~la~~al~~~~~~---~~~~iev~ii~~~-g~~~~l~~~ei~~~ 227 (249)
+||+.|++ +|+ +||++++++||..+.++ ++.+++|++|+++ | ++.++++||+.+
T Consensus 187 ~Le~~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g-~~~~~~~ei~~~ 250 (266)
T 1g0u_M 187 LLRKVVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTG-LTFKKNLQVENM 250 (266)
T ss_dssp HHTTTCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTE-EEEEEEEECCCC
T ss_pred HHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCC-eEEcCHHHhhhh
Confidence 99999999 999 99999999999999875 4789999999999 6 999988887654
No 38
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=1.1e-42 Score=296.03 Aligned_cols=187 Identities=21% Similarity=0.307 Sum_probs=175.0
Q ss_pred CcEEEEEeCCEEEEEEeccCcccc-cccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHHH
Q 025729 31 NAAVGVRGTDIVVLGVEKKSAVKL-QDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
||+|||+++||||||+|+|.++++ +.+++.+||++|++||+|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 689999999999999999998864 4567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025729 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (249)
Q Consensus 110 ~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s-~eai~ 188 (249)
+++++.++.| .+||++++|||||| ++||+||.+||+|++.+++++|+|+|+.+++++||+.|+++|+ +||++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~llvaG~D--~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~ 153 (234)
T 3unf_H 81 RILRQTLFRY-----QGHVGASLVVGGVD--LNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQE 153 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEE--TTEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHH
T ss_pred HHHHHHHHhc-----CCCccEEEEEEEEe--CCCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHH
Confidence 9999999765 36999999999999 4699999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEccHHHHH
Q 025729 189 LAIRALLEVVES---GGKNIEVAVMTREHGLRQLEEAEID 225 (249)
Q Consensus 189 la~~al~~~~~~---~~~~iev~ii~~~g~~~~l~~~ei~ 225 (249)
++++||..+..+ ++++++|++|+++| ++.+++++++
T Consensus 154 la~~al~~~~~~D~~sg~~iev~vi~~dg-~~~l~~~~i~ 192 (234)
T 3unf_H 154 LLVEAITAGILSDLGSGGNVDACVITAGG-AKLQRALSTP 192 (234)
T ss_dssp HHHHHHHHHHHHBTTCCSCEEEEEEESSC-EEEEEEEECC
T ss_pred HHHHHHHHHHhhcCCCCCcEEEEEEECCC-EEEeCceecc
Confidence 999999999865 57899999999997 9988877764
No 39
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=6.8e-42 Score=289.11 Aligned_cols=185 Identities=23% Similarity=0.420 Sum_probs=172.3
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccCcccc-cccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcC-CCcC
Q 025729 27 VRKGNAAVGVRGTDIVVLGVEKKSAVKL-QDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVE-DPVT 104 (249)
Q Consensus 27 ~~~G~t~igi~~~dgVvla~d~~~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~-~~i~ 104 (249)
+++|+|+|||+++||||||+|++.+.++ +.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++ ++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 85 (222)
T 1ryp_M 6 GDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLS 85 (222)
T ss_dssp CCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred ccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 5789999999999999999999999855 4678999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhh-------
Q 025729 105 VEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKN------- 177 (249)
Q Consensus 105 ~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~------- 177 (249)
++.+|+++++.+ |+++ .|||++++||||||+ +++|+||.+||.|++.+++++|+|+|+.+++++||+.
T Consensus 86 v~~la~~l~~~l--y~~r--~~P~~v~~ivaG~D~-~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~ 160 (222)
T 1ryp_M 86 INSAARNIQHLL--YGKR--FFPYYVHTIIAGLDE-DGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQY 160 (222)
T ss_dssp HHHHHHHHHHHH--HTTT--TSCCCEEEEEEEECT-TSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCB
T ss_pred HHHHHHHHHHHH--HhcC--CCCceEEEEEEEEcC-CCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccccccc
Confidence 999999999998 4443 689999999999996 6679999999999999999999999999999999998
Q ss_pred ----------hccCCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCCCEE
Q 025729 178 ----------YKETSG-QETVKLAIRALLEVVES---GGKNIEVAVMTREHGLR 217 (249)
Q Consensus 178 ----------~~~~~s-~eai~la~~al~~~~~~---~~~~iev~ii~~~g~~~ 217 (249)
|+++|+ +||++++++||..+.++ ++++++|++|+++| ++
T Consensus 161 ~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g-~~ 213 (222)
T 1ryp_M 161 EPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDG-VR 213 (222)
T ss_dssp CTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE-EE
T ss_pred ccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCC-eE
Confidence 889999 99999999999999875 47899999999997 54
No 40
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=8.2e-42 Score=285.13 Aligned_cols=183 Identities=17% Similarity=0.303 Sum_probs=169.2
Q ss_pred hcCCcEEEEEeCCEEEEEEeccCcccccc-cCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHH
Q 025729 28 RKGNAAVGVRGTDIVVLGVEKKSAVKLQD-SRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVE 106 (249)
Q Consensus 28 ~~G~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~ 106 (249)
.+|+|+|||+++||||||+|++.+.++.. +++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++
T Consensus 6 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~ 85 (205)
T 1iru_J 6 YNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPY 85 (205)
T ss_dssp SSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHH
T ss_pred CCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCHH
Confidence 68999999999999999999999986554 45899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecc-eeeeecCCchHHHHHHHhhhccCCc-H
Q 025729 107 YITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW-KANATGRNSNSIREFLEKNYKETSG-Q 184 (249)
Q Consensus 107 ~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~-~~~aiG~g~~~~~~~Le~~~~~~~s-~ 184 (249)
.+++++++.+ |+++. .||++++||||||+.+++|+||.+||.|++.++ .++|+|+|+++++++||+.|+++|+ +
T Consensus 86 ~la~~l~~~~--y~~r~--~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~e 161 (205)
T 1iru_J 86 TLMSMVANLL--YEKRF--GPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPD 161 (205)
T ss_dssp HHHHHHHHHH--HTTTT--SCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHH
T ss_pred HHHHHHHHHH--HHhcC--CCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCHH
Confidence 9999999999 66653 499999999999942478999999999999666 6699999999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHhc---CCCcEEEEEEEcCC
Q 025729 185 ETVKLAIRALLEVVES---GGKNIEVAVMTREH 214 (249)
Q Consensus 185 eai~la~~al~~~~~~---~~~~iev~ii~~~g 214 (249)
||++++++||..+.++ ++.+++|++|+++|
T Consensus 162 ea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g 194 (205)
T 1iru_J 162 HLFETISQAMLNAVDRDAVSGMGVIVHIIEKDK 194 (205)
T ss_dssp HHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSB
T ss_pred HHHHHHHHHHHHHHHhCcccCCceEEEEEcCCC
Confidence 9999999999999876 47799999999997
No 41
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=7.6e-42 Score=284.52 Aligned_cols=188 Identities=17% Similarity=0.274 Sum_probs=172.4
Q ss_pred CCcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHH
Q 025729 30 GNAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYI 108 (249)
Q Consensus 30 G~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (249)
++|+|||+++||||||+|++.+. +++.+++.+||++|++|++++++|..+|++.++++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~ 80 (201)
T 1iru_K 1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAA 80 (201)
T ss_dssp CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 58999999999999999999988 68888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhccCCc-HHHH
Q 025729 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETV 187 (249)
Q Consensus 109 a~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s-~eai 187 (249)
++++++.+..+.+ ..|||++++||||||+ ++||+||.+||.|++.+++++|+|+|+++++++||+.|+++|+ +||+
T Consensus 81 a~~~~~~l~~~~~--~~~p~~~~~lvaG~D~-~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~ 157 (201)
T 1iru_K 81 ANFTRRNLADCLR--SRTPYHVNLLLAGYDE-HEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAV 157 (201)
T ss_dssp HHHHHHHHHHHHT--SSSCCCEEEEEEEEET-TTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCccEEEEEEEEeC-CCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHH
Confidence 9999876522222 2379999999999996 5799999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEccH
Q 025729 188 KLAIRALLEVVES---GGKNIEVAVMTREHGLRQLEE 221 (249)
Q Consensus 188 ~la~~al~~~~~~---~~~~iev~ii~~~g~~~~l~~ 221 (249)
+++++||..+.++ ++.+++|++|+++| ++++++
T Consensus 158 ~l~~~al~~a~~rd~~sg~~i~v~vi~~~g-~~~~~~ 193 (201)
T 1iru_K 158 ELLRKCLEELQKRFILNLPTFSVRIIDKNG-IHDLDN 193 (201)
T ss_dssp HHHHHHHHHHHHTBCBCCCCEEEEEEETTE-EECCCC
T ss_pred HHHHHHHHHHHhhccccCCceEEEEEcCCC-eEEeec
Confidence 9999999999875 47799999999998 776653
No 42
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=1.8e-41 Score=282.81 Aligned_cols=183 Identities=19% Similarity=0.291 Sum_probs=169.1
Q ss_pred HhcCCcEEEEEeCCEEEEEEeccCcccccc-cCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCH
Q 025729 27 VRKGNAAVGVRGTDIVVLGVEKKSAVKLQD-SRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTV 105 (249)
Q Consensus 27 ~~~G~t~igi~~~dgVvla~d~~~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~ 105 (249)
+.+|+|+|||+++||||||+|++.+.++.. .++.+||++|+ |++|+++|..+|++.+.++++.+++.|++++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 83 (204)
T 1ryp_J 5 SINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEP 83 (204)
T ss_dssp GSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred CCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCH
Confidence 468999999999999999999999986554 45899999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecc-eeeeecCCchHHHHHHHhhhccCCc-
Q 025729 106 EYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW-KANATGRNSNSIREFLEKNYKETSG- 183 (249)
Q Consensus 106 ~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~-~~~aiG~g~~~~~~~Le~~~~~~~s- 183 (249)
+.+++++++.+ |+++. .||++++||||||+.++||+||.+||.|++.++ .++|+|+|+++++++||+.|+++|+
T Consensus 84 ~~la~~l~~~~--y~~~~--~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 159 (204)
T 1ryp_J 84 ETFTQLVSSSL--YERRF--GPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEP 159 (204)
T ss_dssp HHHHHHHHHHH--HTTTT--SCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred HHHHHHHHHHH--HHhcC--CCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCH
Confidence 99999999999 77654 399999999999942478999999999999766 6699999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc---CCCcEEEEEEEcCC
Q 025729 184 QETVKLAIRALLEVVES---GGKNIEVAVMTREH 214 (249)
Q Consensus 184 ~eai~la~~al~~~~~~---~~~~iev~ii~~~g 214 (249)
+||++++++||..+.++ ++.+++|++|+++|
T Consensus 160 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g 193 (204)
T 1ryp_J 160 EDLFETISQALLNAADRDALSGWGAVVYIIKKDE 193 (204)
T ss_dssp HHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSC
T ss_pred HHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCC
Confidence 99999999999999875 47899999999998
No 43
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=2.6e-41 Score=285.56 Aligned_cols=185 Identities=21% Similarity=0.234 Sum_probs=171.4
Q ss_pred CcEEEEEeCCEEEEEEeccCcccc-cccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHHH
Q 025729 31 NAAVGVRGTDIVVLGVEKKSAVKL-QDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|++.+.++ +.+++.+||++|++|++|+++|..+|++.++++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 689999999999999999998854 5567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025729 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (249)
Q Consensus 110 ~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s-~eai~ 188 (249)
+++++.++.| .|||++++|||||| ++||+||.+||+|++.+++++|+|+|+.+++++||+.|+++|+ +||++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D--~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~ 153 (222)
T 1ryp_I 81 QMLKQHLFKY-----QGHIGAYLIVAGVD--PTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIK 153 (222)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEE--TTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHH
T ss_pred HHHHHHHhhc-----CCCCCeeEEEEEEe--CCCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHH
Confidence 9999998765 37999999999999 4689999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEccHH
Q 025729 189 LAIRALLEVVES---GGKNIEVAVMTREHGLRQLEEA 222 (249)
Q Consensus 189 la~~al~~~~~~---~~~~iev~ii~~~g~~~~l~~~ 222 (249)
++++||..+.++ ++.+++|++|+++|+++.+.+.
T Consensus 154 la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~ 190 (222)
T 1ryp_I 154 LASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNY 190 (222)
T ss_dssp HHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEE
T ss_pred HHHHHHHHHHhccccCCCcEEEEEEECCCCEEEEece
Confidence 999999999875 4779999999999757765543
No 44
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=2.7e-42 Score=286.72 Aligned_cols=190 Identities=19% Similarity=0.263 Sum_probs=175.3
Q ss_pred CcEEEEEeCCEEEEEEeccCccc-ccccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHHH
Q 025729 31 NAAVGVRGTDIVVLGVEKKSAVK-LQDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
||+|||+++||||||+|++.+.+ ++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999885 77888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecc-eeeeecCCchHHHHHHHhhhccCCc-HHHH
Q 025729 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAW-KANATGRNSNSIREFLEKNYKETSG-QETV 187 (249)
Q Consensus 110 ~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~-~~~aiG~g~~~~~~~Le~~~~~~~s-~eai 187 (249)
++++++++.+ .|||++++||||||+ +++|+||. |+|++.++ .++++|+|+++++++||+.|+++|+ +||+
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~-~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~ 152 (199)
T 3unf_N 81 NVVKNISYKY-----REDLLAHLIVAGWDQ-REGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECR 152 (199)
T ss_dssp HHHHHHHHHT-----TTTCCCCEEEEEEET-TTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEEEEeC-CCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHH
Confidence 9999999764 369999999999996 58899999 99998766 4556799999999999999999999 9999
Q ss_pred HHHHHHHHHHHhc---CCCcEEEEEEEcCC-CEEEccHHHHHHHH
Q 025729 188 KLAIRALLEVVES---GGKNIEVAVMTREH-GLRQLEEAEIDAIV 228 (249)
Q Consensus 188 ~la~~al~~~~~~---~~~~iev~ii~~~g-~~~~l~~~ei~~~~ 228 (249)
+++++||..+.++ ++++++|++|+++| .++.++++||++++
T Consensus 153 ~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~ 197 (199)
T 3unf_N 153 RFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFY 197 (199)
T ss_dssp HHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCC
T ss_pred HHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCcccc
Confidence 9999999999876 46899999999997 57789999987654
No 45
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=2.4e-40 Score=281.75 Aligned_cols=184 Identities=21% Similarity=0.284 Sum_probs=170.4
Q ss_pred CcEEEEEeCCEEEEEEeccCcccc-cccCcccceEEecCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHHH
Q 025729 31 NAAVGVRGTDIVVLGVEKKSAVKL-QDSRMVRKIVSLDNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYIT 109 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la 109 (249)
+|+|||+++||||||+|+|.+.++ +..++.+||++|++|++|+++|..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 689999999999999999999855 4457899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecceeeeecCCchHHHHHHHhhhccCCc-HHHHH
Q 025729 110 RYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKETSG-QETVK 188 (249)
Q Consensus 110 ~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s-~eai~ 188 (249)
+++++.++.|. +||++++|||||| ++||+||.+||+|++.+++++|+|+|++.++++||+.|+++|+ +||++
T Consensus 81 ~~l~~~l~~~~-----~~~~v~llvaG~D--~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~ 153 (234)
T 1iru_I 81 RMLKQMLFRYR-----GYIGAALVLGGVD--VTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKN 153 (234)
T ss_dssp HHHHHHHHHTT-----TCSCEEEEEEEEC--SSCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHT
T ss_pred HHHHHHHHhcC-----CCCceeEEEEEEc--CCCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHH
Confidence 99999997653 5999999999999 4789999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEEcCCCEEEccHH
Q 025729 189 LAIRALLEVVES---GGKNIEVAVMTREHGLRQLEEA 222 (249)
Q Consensus 189 la~~al~~~~~~---~~~~iev~ii~~~g~~~~l~~~ 222 (249)
++++||..+..+ ++++++|++|+++| ++.+.+.
T Consensus 154 la~~al~~a~~~d~~sg~~i~v~vi~k~g-~~~~~~~ 189 (234)
T 1iru_I 154 LVSEAIAAGIFNDLGSGSNIDLCVISKNK-LDFLRPY 189 (234)
T ss_dssp HHHHHHHHHHHHCTTCCSCEEEEEEETTE-EECCSEE
T ss_pred HHHHHHHHHHHhcccCCCCEEEEEEECCc-EEEEcce
Confidence 999999998875 37899999999997 7765543
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=2.4e-34 Score=235.41 Aligned_cols=165 Identities=15% Similarity=0.120 Sum_probs=147.3
Q ss_pred hcCCcEEEEEeCCEEEEEEeccCcc-cc-cccCcccceEEe-cCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcC
Q 025729 28 RKGNAAVGVRGTDIVVLGVEKKSAV-KL-QDSRMVRKIVSL-DNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVT 104 (249)
Q Consensus 28 ~~G~t~igi~~~dgVvla~d~~~~~-~l-~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~ 104 (249)
.+|+|+|||+++||||||+|++.+. .+ +.+++.+||++| ++|++++++|..+|++.+.++++.+++.|+ +
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g---- 75 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G---- 75 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T----
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C----
Confidence 5799999999999999999999998 57 888999999999 999999999999999999999999999998 3
Q ss_pred HHHHHHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceec--ceeeeecCCchHHHHHHHhhhcc--
Q 025729 105 VEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSA--WKANATGRNSNSIREFLEKNYKE-- 180 (249)
Q Consensus 105 ~~~la~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~--~~~~aiG~g~~~~~~~Le~~~~~-- 180 (249)
.+.+.++++.+.++++..+|||++++||+ | +|+||.+||.|++.+ ++++|+|+|+++++++||+.|++
T Consensus 76 --~~~~~~~~l~~~~~~~~~~rp~~~~~lva--d----~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ 147 (180)
T 2z3b_A 76 --NLKRAAVELAKEWRSDKVLRKLEAMLIVM--N----QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAG 147 (180)
T ss_dssp --CHHHHHHHHHHHHHHCTTGGGCCCCEEEE--C----SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHG
T ss_pred --ChHHHHHHHHHHHHhhhCcCcceEEEEEE--c----CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccC
Confidence 23445556667777788899999999999 5 599999999999998 59999999999999999999998
Q ss_pred -CCc-HHHHHHHHHHHHHHHhc---CCCcEEEEEE
Q 025729 181 -TSG-QETVKLAIRALLEVVES---GGKNIEVAVM 210 (249)
Q Consensus 181 -~~s-~eai~la~~al~~~~~~---~~~~iev~ii 210 (249)
+|+ +|+ +.+||..+.++ ++++++|.+|
T Consensus 148 ~~mt~eel---~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 148 ESMSASEI---ARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp GGCCHHHH---HHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred CCCCHHHH---HHHHHHHHHHhcCccCCeEEEEEE
Confidence 999 884 67888888875 5788999887
No 47
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=2.1e-33 Score=228.63 Aligned_cols=163 Identities=15% Similarity=0.150 Sum_probs=144.0
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEe-cCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHH
Q 025729 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSL-DNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYI 108 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (249)
+|+|||+++||||||+|++.+. .++.+++.+||++| ++|++++++|..+|++.+.++++.+++.|++ + +
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~---~ 71 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------H---L 71 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------C---H
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------c---H
Confidence 6899999999999999999988 47788899999999 9999999999999999999999999999986 2 3
Q ss_pred HHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecce---eeeecCCchHHHHHHHhhhc-cCCc-
Q 025729 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK---ANATGRNSNSIREFLEKNYK-ETSG- 183 (249)
Q Consensus 109 a~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~---~~aiG~g~~~~~~~Le~~~~-~~~s- 183 (249)
.+.++.+.+.++++...||++ ++++|+| +|+||.+||+|++.+++ ++|+|+|+++++++||+.|+ ++|+
T Consensus 72 ~~~~~~l~~~~~~~~~~r~~~--~~l~g~d----~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~ 145 (174)
T 1g3k_A 72 LKSAVELAKDWRTDRALRKLE--AMLIVAD----EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSA 145 (174)
T ss_dssp HHHHHHHHHHHHHSTTGGGCC--CEEEEEC----SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHHHHHhccCcCcce--EEEEEEC----CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCH
Confidence 455566666677777788875 5777886 69999999999999988 99999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHhc---CCCcEEEEEEE
Q 025729 184 QETVKLAIRALLEVVES---GGKNIEVAVMT 211 (249)
Q Consensus 184 ~eai~la~~al~~~~~~---~~~~iev~ii~ 211 (249)
+ +++++||..+.++ ++++++|.+|+
T Consensus 146 ~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 146 H---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp H---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred H---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 6 6888899888875 47899999985
No 48
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=3.3e-33 Score=226.80 Aligned_cols=163 Identities=17% Similarity=0.168 Sum_probs=141.5
Q ss_pred CcEEEEEeCCEEEEEEeccCcc-cccccCcccceEEe-cCcEEEEEeccHHHHHHHHHHHHHHHHHhhhhcCCCcCHHHH
Q 025729 31 NAAVGVRGTDIVVLGVEKKSAV-KLQDSRMVRKIVSL-DNHIALACAGLKADARVLVNRARIECQSHRLTVEDPVTVEYI 108 (249)
Q Consensus 31 ~t~igi~~~dgVvla~d~~~~~-~l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~l 108 (249)
+|+|||+++||||||+|+|.+. .++.+++.+||++| ++|++++++|..+|++.+.++++.+++.|+++ +
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~---------~ 71 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN---------L 71 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC---------H
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc---------H
Confidence 6899999999999999999987 67888899999999 99999999999999999999999999998854 2
Q ss_pred HHHHHHHHHHhhccCCCCcceeeeEEEEeeCCCCcceEEEECCCCceecce--eeeecCCchHHHHHHHhhhc-cCCcHH
Q 025729 109 TRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGVPSLYQTDPSGTFSAWK--ANATGRNSNSIREFLEKNYK-ETSGQE 185 (249)
Q Consensus 109 a~~l~~~~~~~~~~~~~rP~~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~~--~~aiG~g~~~~~~~Le~~~~-~~~s~e 185 (249)
.+.++++.+.++++...|||++++|++ | ||+||.+||.|++.+++ ++|+|+|+++++++||+.|+ ++|+.
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~lv~--D----~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~- 144 (171)
T 1m4y_A 72 TKAAVELAKDWRTDRVLRRLEALLLVA--D----KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA- 144 (171)
T ss_dssp HHHHHHHHHHHHHCTTGGGCCCEEEEE--C----SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH-
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEEEE--c----CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH-
Confidence 344444455566666778999998888 5 79999999999999987 99999999999999999999 99982
Q ss_pred HHHHHHHHHHHHHhc---CCCcEEEEEE
Q 025729 186 TVKLAIRALLEVVES---GGKNIEVAVM 210 (249)
Q Consensus 186 ai~la~~al~~~~~~---~~~~iev~ii 210 (249)
.+++++||..+.++ ++++++|.++
T Consensus 145 -~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 145 -REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp -HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred -HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 45788889888875 4778888763
No 49
>3rj2_X ORF158L protein, putative uncharacterized protein; histone 3, protein binding; 2.20A {Singapore grouper iridovirus}
Probab=44.78 E-value=4.1 Score=29.87 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=13.9
Q ss_pred CCCCCCCcccCCCCcch
Q 025729 2 ARYDRAITVFSPDGHLF 18 (249)
Q Consensus 2 ~~yd~~~~~fspeG~l~ 18 (249)
++-|..+|.|+|.||+.
T Consensus 53 ~gm~h~vTfF~~~Grl~ 69 (138)
T 3rj2_X 53 MFMRHRVTFFNATGRYI 69 (138)
T ss_dssp TTCEEEEEEECTTSCEE
T ss_pred CcceeEEEEEcCCCcEE
Confidence 45688899999999873
No 50
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=41.25 E-value=56 Score=20.16 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=23.9
Q ss_pred HHHHHHHhhhc-cCCc---HHHHHHHHHHHHHHHhcC
Q 025729 169 SIREFLEKNYK-ETSG---QETVKLAIRALLEVVESG 201 (249)
Q Consensus 169 ~~~~~Le~~~~-~~~s---~eai~la~~al~~~~~~~ 201 (249)
.+..+|..... ..++ .|.++.|++||.+++..+
T Consensus 8 sIi~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v~ 44 (52)
T 4gof_A 8 AIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVT 44 (52)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCCC
Confidence 34556666544 3455 788999999999999753
No 51
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=37.35 E-value=21 Score=27.81 Aligned_cols=31 Identities=10% Similarity=-0.026 Sum_probs=28.1
Q ss_pred CcccCCCCcch-hhhhHHHHHhcCCcEEEEEe
Q 025729 8 ITVFSPDGHLF-QVEYALEAVRKGNAAVGVRG 38 (249)
Q Consensus 8 ~~~fspeG~l~-Qveya~~a~~~G~t~igi~~ 38 (249)
+-+||+.|+-- -||-|.++-.+|-++|+|..
T Consensus 81 vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 81 VLIFTPDTERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp EEEEESCSCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 56899999955 89999999999999999988
No 52
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=31.63 E-value=26 Score=29.90 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=32.1
Q ss_pred cceEEEECCCCceecc-eeeeecCCchHHHHHHHhhhccCCc-HHHH
Q 025729 143 VPSLYQTDPSGTFSAW-KANATGRNSNSIREFLEKNYKETSG-QETV 187 (249)
Q Consensus 143 gp~Ly~idp~G~~~~~-~~~aiG~g~~~~~~~Le~~~~~~~s-~eai 187 (249)
-|..|.||+.|.+... +..-.+.....+...|++...++|+ .+++
T Consensus 102 ~r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~~~~~~~~~~I 148 (322)
T 4eo3_A 102 VRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIEEDLSLNKHI 148 (322)
T ss_dssp CCEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHHHHHTSCCHHH
T ss_pred ccEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhchhhhHHHHHH
Confidence 3678999999998753 4455667778888888877655554 4444
No 53
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=29.05 E-value=75 Score=22.06 Aligned_cols=33 Identities=9% Similarity=0.192 Sum_probs=23.8
Q ss_pred HHHHHHHhhhc-cCCc---HHHHHHHHHHHHHHHhcC
Q 025729 169 SIREFLEKNYK-ETSG---QETVKLAIRALLEVVESG 201 (249)
Q Consensus 169 ~~~~~Le~~~~-~~~s---~eai~la~~al~~~~~~~ 201 (249)
.+..+|..... ..++ .|.++.|++||.+++..+
T Consensus 25 sIIdFL~~sv~~~~ls~D~~ESLEVAIqCI~~AF~Vd 61 (92)
T 4asv_A 25 LIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGFE 61 (92)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCCC
Confidence 44556666544 3455 788999999999998753
No 54
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=28.51 E-value=1e+02 Score=20.46 Aligned_cols=33 Identities=9% Similarity=0.192 Sum_probs=23.8
Q ss_pred HHHHHHHhhhc-cCCc---HHHHHHHHHHHHHHHhcC
Q 025729 169 SIREFLEKNYK-ETSG---QETVKLAIRALLEVVESG 201 (249)
Q Consensus 169 ~~~~~Le~~~~-~~~s---~eai~la~~al~~~~~~~ 201 (249)
.+..+|..... ..++ .|.++.|++||.+++..+
T Consensus 13 sIi~FL~~~~~~~~ls~D~~ESLeVAiqCI~~aF~v~ 49 (74)
T 2lxb_A 13 LIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGFE 49 (74)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCCC
Confidence 34556666544 3455 788999999999999753
No 55
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=28.41 E-value=41 Score=27.14 Aligned_cols=32 Identities=22% Similarity=0.109 Sum_probs=27.5
Q ss_pred cccCCCCcchhhhhHHHHHhcCCcEEEEEeCC
Q 025729 9 TVFSPDGHLFQVEYALEAVRKGNAAVGVRGTD 40 (249)
Q Consensus 9 ~~fspeG~l~Qveya~~a~~~G~t~igi~~~d 40 (249)
|.||++|..---|++..|...|-..|||+-.+
T Consensus 8 t~~S~DG~~~~ee~v~~A~~~Gl~~iaiTDH~ 39 (267)
T 2yxo_A 8 TPLCGHAEGHPEAYLEEARAKGLKGVVFTDHS 39 (267)
T ss_dssp CGGGSSCCSCHHHHHHHHHHTTCSEEEEEEEC
T ss_pred cCCCCCCCCCHHHHHHHHHHcCCCEEEEcCCC
Confidence 57899999888899999999999998887654
No 56
>3kol_A Oxidoreductase, glyoxalase/bleomycin resistance protein/dioxygenase; metal ION binding, NYSGXRC, PSI2, structural genomics; 1.90A {Nostoc punctiforme pcc 73102}
Probab=27.96 E-value=62 Score=22.97 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=15.7
Q ss_pred CCcceEEEECCCCceecceee
Q 025729 141 TGVPSLYQTDPSGTFSAWKAN 161 (249)
Q Consensus 141 ~~gp~Ly~idp~G~~~~~~~~ 161 (249)
..+..+|..||+|+.++.-..
T Consensus 131 ~~g~~~~~~DPdG~~iel~~~ 151 (156)
T 3kol_A 131 PTGRGVYFYDPDGFMIEIRCD 151 (156)
T ss_dssp -CCEEEEEECTTSCEEEEEEC
T ss_pred CCccEEEEECCCCCEEEEEec
Confidence 345589999999999886443
No 57
>4g6x_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.73A {Catenulispora acidiphila}
Probab=22.01 E-value=83 Score=22.79 Aligned_cols=29 Identities=17% Similarity=0.090 Sum_probs=19.4
Q ss_pred eeeeEEEEeeCCCCcceEEEECCCCceecc
Q 025729 129 GLSTLIVGFDPYTGVPSLYQTDPSGTFSAW 158 (249)
Q Consensus 129 ~v~~iiaG~d~~~~gp~Ly~idp~G~~~~~ 158 (249)
|+.++-.-.+. .+|-..|..||+|+.++.
T Consensus 120 Gv~~~~~p~~~-~~g~~~~f~DPdGn~iel 148 (155)
T 4g6x_A 120 GVRFTQEPTDM-GPVVTAILDDTCGNLIQL 148 (155)
T ss_dssp TCCEEEEEEEC-SSCEEEEEECSSSCEEEE
T ss_pred CcEEeeCCEEc-CCeEEEEEECCCCCEEEE
Confidence 34434333454 566778889999998875
No 58
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=21.60 E-value=1.3e+02 Score=20.59 Aligned_cols=50 Identities=6% Similarity=-0.053 Sum_probs=34.9
Q ss_pred cCCc-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcCC-CEEEccHHHHHHHHHHHH
Q 025729 180 ETSG-QETVKLAIRALLEVVESGGKNIEVAVMTREH-GLRQLEEAEIDAIVSEIE 232 (249)
Q Consensus 180 ~~~s-~eai~la~~al~~~~~~~~~~iev~ii~~~g-~~~~l~~~ei~~~~~~i~ 232 (249)
++++ ++..+.....++. ..+..+.+.+++.+| .+...+.+|+++.+.-++
T Consensus 24 ~~i~~~~L~~kv~~~~~~---~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~ 75 (89)
T 1vd2_A 24 PSISFEGLCNEVRDMCSF---DNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYE 75 (89)
T ss_dssp TTCCHHHHHHHHHHHTTC---CSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCC---CCCCeEEEEEECCCCCcccccCHHHHHHHHHHHH
Confidence 4667 7777665553331 135679999999876 466788889998877554
No 59
>2rbb_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-2, PROT structure initiative; 1.82A {Burkholderia phytofirmans}
Probab=20.99 E-value=1.2e+02 Score=21.20 Aligned_cols=22 Identities=14% Similarity=-0.000 Sum_probs=16.4
Q ss_pred cceEEEECCCCceecceeeeec
Q 025729 143 VPSLYQTDPSGTFSAWKANATG 164 (249)
Q Consensus 143 gp~Ly~idp~G~~~~~~~~aiG 164 (249)
+..+|..||+|+.++......|
T Consensus 114 ~~~~~~~DPdG~~iel~~~~~~ 135 (141)
T 2rbb_A 114 WYQAVLLDPERNVFRINNVLEG 135 (141)
T ss_dssp EEEEEEECTTSCEEEEEEEC--
T ss_pred cEEEEEECCCCCEEEEEEcccc
Confidence 4678999999999987665555
No 60
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=20.22 E-value=74 Score=24.34 Aligned_cols=24 Identities=8% Similarity=0.210 Sum_probs=20.4
Q ss_pred EEEEEcCCCEEEccHHHHHHHHHH
Q 025729 207 VAVMTREHGLRQLEEAEIDAIVSE 230 (249)
Q Consensus 207 v~ii~~~g~~~~l~~~ei~~~~~~ 230 (249)
|.|.+++|.|+.+++++|..++..
T Consensus 25 I~Wt~~~geFklvdpe~VArLWG~ 48 (157)
T 1hbx_G 25 ICWTSNDGQFKLLQAEEVARLWGI 48 (157)
T ss_dssp EEECSSSSCEEETTHHHHHHHHHH
T ss_pred eEEeCCCCEEEecCcHHHHHHHHh
Confidence 677788889999999999888764
Done!