RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 025730
(249 letters)
>gnl|CDD|178597 PLN03026, PLN03026, histidinol-phosphate aminotransferase;
Provisional.
Length = 380
Score = 344 bits (885), Expect = e-119
Identities = 140/181 (77%), Positives = 159/181 (87%)
Query: 52 QQVNEGQRRLTGDSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPP 111
++E ++ +GDSFIR H+ +L PYQPILPFEVLS QLGRKPEDIVK+DANENPYGPPP
Sbjct: 9 TAMSEVKQSTSGDSFIRKHILQLAPYQPILPFEVLSAQLGRKPEDIVKLDANENPYGPPP 68
Query: 112 EVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGD 171
EV EALG +KFPY+YPDPESRRLRAALA+DSGLES++ILVGCGADELIDL+MRCVLDPGD
Sbjct: 69 EVLEALGNMKFPYVYPDPESRRLRAALAEDSGLESENILVGCGADELIDLLMRCVLDPGD 128
Query: 172 KIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPD 231
KI+DCPPTF MY FDAAVNGA V+KVPR DFSL+V I +AVE KPK +FLTSPNNPD
Sbjct: 129 KIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLTSPNNPD 188
Query: 232 G 232
G
Sbjct: 189 G 189
>gnl|CDD|233290 TIGR01141, hisC, histidinol-phosphate aminotransferase. Alternate
names: histidinol-phosphate transaminase; imidazole
acetol-phosphate transaminase Histidinol-phosphate
aminotransferase is a pyridoxal-phosphate dependent
enzyme [Amino acid biosynthesis, Histidine family].
Length = 346
Score = 168 bits (428), Expect = 1e-50
Identities = 70/166 (42%), Positives = 107/166 (64%), Gaps = 11/166 (6%)
Query: 68 RSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFP-YIY 126
R ++ L PYQP ++++K+++NENP+GPPP+ +EAL + Y
Sbjct: 1 RPDIKNLSPYQPARELGG---------KEVIKLNSNENPFGPPPKAKEALRAEADKLHRY 51
Query: 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFD 186
PDP+ L+ ALA G++ + IL+G G+DE+I+L++R L+PGD ++ PPT++MYE
Sbjct: 52 PDPDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAFLEPGDAVLVPPPTYSMYEIS 111
Query: 187 AAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
A ++GA VVKVP D L++E I A++ +KPK +FL SPNNP G
Sbjct: 112 AKIHGAEVVKVPLDEDGQLDLEDILVAID-DKPKLVFLCSPNNPTG 156
>gnl|CDD|223157 COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and
cobyric acid decarboxylase [Amino acid transport and
metabolism].
Length = 356
Score = 163 bits (414), Expect = 2e-48
Identities = 76/170 (44%), Positives = 108/170 (63%), Gaps = 12/170 (7%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYI 125
+R +R L PY P + Q G I+K+ +NENPYGPPP+V EA+ L
Sbjct: 2 LRPLVRDLPPYVP------GARQYG--LPGIIKLSSNENPYGPPPKVIEAIRAALDKLNR 53
Query: 126 YPDPESRRLRAALA-KDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE 184
YPDP+ R LRAALA ++ +++LVG G+DELI+L++R ++PGD ++ PTF+MYE
Sbjct: 54 YPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAFVEPGDTVLIPEPTFSMYE 113
Query: 185 FDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234
A + GA VVKVP K +F L+++ I A+ R+K K +FL +PNNP G
Sbjct: 114 IAAQLAGAEVVKVPLK-EFRLDLDAILAAI-RDKTKLVFLCNPNNPTGTL 161
>gnl|CDD|234872 PRK00950, PRK00950, histidinol-phosphate aminotransferase;
Validated.
Length = 361
Score = 155 bits (394), Expect = 1e-45
Identities = 72/168 (42%), Positives = 111/168 (66%), Gaps = 3/168 (1%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYI 125
IR+ ++++KPY P E ++ + G PE I+K+ +NENP GP P+ EA+ + L +
Sbjct: 6 IRAEVKEIKPYVPGKSKEEIAREYGIDPESIIKLGSNENPLGPSPKAVEAIEKELSKIHR 65
Query: 126 YPDPESRRLRAALAKDSGLESDHILV-GCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE 184
YP+P++ LR AL+K +G+ ++I+V G G DE+ID +MR +DPGD+++ PTF+ YE
Sbjct: 66 YPEPDAPELREALSKYTGVPVENIIVGGDGMDEVIDTLMRTFIDPGDEVIIPTPTFSYYE 125
Query: 185 FDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
A +GA V R+ DFSL+V+ + +A+ EK K IFL +PNNP G
Sbjct: 126 ISAKAHGAKPVYAKREEDFSLDVDSVLNAIT-EKTKVIFLCTPNNPTG 172
>gnl|CDD|235106 PRK03158, PRK03158, histidinol-phosphate aminotransferase;
Provisional.
Length = 359
Score = 144 bits (365), Expect = 3e-41
Identities = 64/169 (37%), Positives = 100/169 (59%), Gaps = 5/169 (2%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREAL-GQLKFPYI 125
++ L +L YQP E + + G E IVK+ +NENPYGP P+V+EA+ L +
Sbjct: 3 MKEQLNQLSAYQPGKSIEEVKREYGL--EKIVKLASNENPYGPSPKVKEAIAAHLDELAL 60
Query: 126 YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF 185
YPD + LR +AK G++ + +L G G DE+I +I R +L+PG V PTF+ Y
Sbjct: 61 YPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRALLNPGTNTVMAEPTFSQYRH 120
Query: 186 DAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234
+A + GA V +VP K D ++E + A++ E+ K +++ +PNNP G +
Sbjct: 121 NAIIEGAEVREVPLK-DGGHDLEAMLKAID-EQTKIVWICNPNNPTGTY 167
>gnl|CDD|235064 PRK02731, PRK02731, histidinol-phosphate aminotransferase;
Validated.
Length = 367
Score = 143 bits (363), Expect = 7e-41
Identities = 57/166 (34%), Positives = 93/166 (56%), Gaps = 5/166 (3%)
Query: 68 RSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREAL-GQLKFPYIY 126
+ + PY P P E L + G DI+K+ +NENP GP P+ EA+ + Y
Sbjct: 7 NPGILDIAPYVPGKPIEELVREYG--IADIIKLASNENPLGPSPKAIEAIRAAADELHRY 64
Query: 127 PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFD 186
PD L+AALA+ G++ + I++G G+DE+++L+ R L PGD+++ F +Y
Sbjct: 65 PDGSGFELKAALAEKFGVDPERIILGNGSDEILELLARAYLGPGDEVIYSEHGFAVYPIA 124
Query: 187 AAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
A GA V+VP K D+ +++ + AV + + +F+ +PNNP G
Sbjct: 125 AQAVGAKPVEVPAK-DYGHDLDAMLAAVT-PRTRLVFIANPNNPTG 168
>gnl|CDD|179888 PRK04870, PRK04870, histidinol-phosphate aminotransferase;
Provisional.
Length = 356
Score = 121 bits (305), Expect = 2e-32
Identities = 54/143 (37%), Positives = 77/143 (53%), Gaps = 4/143 (2%)
Query: 94 PEDIVKIDANENPYGPPPEVREALGQ-LKFPYI--YPDPESRRLRAALAKDSGL-ESDHI 149
+VK+DA ENPY P E+R LG+ L + YPDP + L+AAL G+ +
Sbjct: 25 ATGMVKLDAMENPYRLPAELRAELGERLAEVALNRYPDPRAAALKAALRAAMGVPAGADV 84
Query: 150 LVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVEL 209
L+G G+DELI L+ PG ++ P F MY A + G V VP +DF+L++
Sbjct: 85 LLGNGSDELIQLLALACAKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPA 144
Query: 210 IADAVEREKPKCIFLTSPNNPDG 232
+ A+ +P +FL PNNP G
Sbjct: 145 MLAAIAEHRPALVFLAYPNNPTG 167
>gnl|CDD|179950 PRK05166, PRK05166, histidinol-phosphate aminotransferase;
Provisional.
Length = 371
Score = 117 bits (294), Expect = 7e-31
Identities = 62/175 (35%), Positives = 99/175 (56%), Gaps = 6/175 (3%)
Query: 65 SFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQL-KFP 123
S R+ +R L PY L E + + G I K+ +NENP GP P VR A + +
Sbjct: 8 SLARAEVRPLPPYNAGLTIEEVRARYG--VPRIAKLGSNENPLGPSPAVRRAFADIAELL 65
Query: 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMY 183
+YPDP+ R LR A+A +G+ +D I++G G+++LI +I R VL PGD++V P+F ++
Sbjct: 66 RLYPDPQGRALREAIAARTGVPADRIILGNGSEDLIAVICRAVLRPGDRVVTLYPSFPLH 125
Query: 184 EFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTS 238
E + GA V +V D +++ + AV P+ + ++P+NP G SW +
Sbjct: 126 EDYPTMMGARVERVTVTPDLGFDLDALCAAV-ARAPRMLMFSNPSNPVG--SWLT 177
>gnl|CDD|184829 PRK14807, PRK14807, histidinol-phosphate aminotransferase;
Provisional.
Length = 351
Score = 114 bits (286), Expect = 6e-30
Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 3/137 (2%)
Query: 99 KIDANENPYGPPPEVREALGQLKFPY---IYPDPESRRLRAALAKDSGLESDHILVGCGA 155
K+DANE P+ P EV + + ++ IYPDP + +LR LA+ + +I VG G+
Sbjct: 26 KMDANETPFELPEEVIKNIQEIVKSSQVNIYPDPTAEKLREELARYCSVVPTNIFVGNGS 85
Query: 156 DELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVE 215
DE+I LIM ++ GD ++ P+F MY + + GA + V K D++ +V +E
Sbjct: 86 DEIIHLIMLAFINKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIE 145
Query: 216 REKPKCIFLTSPNNPDG 232
+ +PK +FL +PNNP G
Sbjct: 146 KYQPKLVFLCNPNNPTG 162
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 113 bits (286), Expect = 7e-30
Identities = 49/147 (33%), Positives = 75/147 (51%), Gaps = 11/147 (7%)
Query: 98 VKIDANENPYGPPPEVREALGQL----KFPYIYPDPESRRLRAALAK------DSGLESD 147
+ + E + PPPEV EAL YPDP LR A+A+ + +
Sbjct: 1 IDLSIGEPDFPPPPEVLEALAAAALRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPE 60
Query: 148 HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNV 207
I+V GA E + L++R +L+PGD+++ PT+ YE A + GA VV VP + +
Sbjct: 61 EIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARLAGAEVVPVPLDEEGGFLL 120
Query: 208 ELIA-DAVEREKPKCIFLTSPNNPDGR 233
+L +A + K K ++L +PNNP G
Sbjct: 121 DLELLEAAKTPKTKLLYLNNPNNPTGA 147
>gnl|CDD|167650 PRK03967, PRK03967, histidinol-phosphate aminotransferase;
Provisional.
Length = 337
Score = 108 bits (272), Expect = 5e-28
Identities = 62/163 (38%), Positives = 92/163 (56%), Gaps = 18/163 (11%)
Query: 79 PILPFEVLSIQLGRKPEDIVKI--DANENPYGPPPEVREALGQL-------KFPYIYPDP 129
I V S + R E +I D NENP+ P E++E + + ++P+I DP
Sbjct: 1 MIRE-LVKSFKPYRVVEGNYRIWLDKNENPFDLPEELKEEIFEELKRVPFNRYPHITSDP 59
Query: 130 ESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV 189
LR A+A+ GL++++I VG G+DELI +++ L G IV PPTF MY F A +
Sbjct: 60 ----LREAIAEFYGLDAENIAVGNGSDELISYLVK--LFEGKHIVITPPTFGMYSFYAKL 113
Query: 190 NGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
NG V+ VP K DF+++ E IA+ + + +F+ SPNNP G
Sbjct: 114 NGIPVIDVPLKEDFTIDGERIAE--KAKNASAVFICSPNNPTG 154
>gnl|CDD|179559 PRK03321, PRK03321, putative aminotransferase; Provisional.
Length = 352
Score = 100 bits (250), Expect = 9e-25
Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 13/167 (7%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYI 125
+R L + Y P G+ +K+ +NE P+GP P VR A+ +
Sbjct: 5 LRPDLAGIPAYVP-----------GKTVPGAIKLSSNETPFGPLPSVRAAIARAAAGVNR 53
Query: 126 YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF 185
YPD + LRAALA+ G+ +H+ VGCG+ L +++ PGD+++ +F Y
Sbjct: 54 YPDMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQATAGPGDEVIFAWRSFEAYPI 113
Query: 186 DAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
V GA V+VP D + +++ +A A+ ++ + IF+ +PNNP G
Sbjct: 114 LVQVAGATPVQVPLTPDHTHDLDAMAAAIT-DRTRLIFVCNPNNPTG 159
>gnl|CDD|235115 PRK03317, PRK03317, histidinol-phosphate aminotransferase;
Provisional.
Length = 368
Score = 96.5 bits (241), Expect = 2e-23
Identities = 56/182 (30%), Positives = 87/182 (47%), Gaps = 33/182 (18%)
Query: 67 IRSHLRKLKPY-QPILPFEVLSIQLGRKPEDI-VKIDANENPYGPPPE--------VREA 116
+R LR PY P QL D+ V+++ NENPY P P V EA
Sbjct: 10 LRDDLRGKSPYGAP---------QL-----DVPVRLNTNENPYPPSPALVADIAEAVAEA 55
Query: 117 LGQLKFPYIYPDPESRRLRAALA----KDSG--LESDHILVGCGADELIDLIMRCVLDPG 170
L YPD ++ LRA LA +G L +++ G++E++ +++ PG
Sbjct: 56 AAGLNR---YPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAFGGPG 112
Query: 171 DKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNP 230
+ P+++M+ A V+ PR +DF+L+V+ A+ +P +FLTSPNNP
Sbjct: 113 RTALGFVPSYSMHPIIARGTHTEWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNP 172
Query: 231 DG 232
G
Sbjct: 173 TG 174
>gnl|CDD|234972 PRK01688, PRK01688, histidinol-phosphate aminotransferase;
Provisional.
Length = 351
Score = 95.8 bits (239), Expect = 3e-23
Identities = 53/170 (31%), Positives = 86/170 (50%), Gaps = 17/170 (10%)
Query: 64 DSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFP 123
R ++R L PYQ + +LG + V ++ANE P + L Q
Sbjct: 6 TDLARENVRALTPYQS-------ARRLGGNGD--VWLNANEYPTAVEFQ----LTQQTLN 52
Query: 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPG-DKIVDCPPTFTM 182
YP+ + + + A +G++ + +LV GADE I+L++R +PG D I+ CPPT+ M
Sbjct: 53 R-YPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTYGM 111
Query: 183 YEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
Y A G + VP ++ L++ IAD + + K +++ SPNNP G
Sbjct: 112 YSVSAETIGVEIRTVPTLDNWQLDLPAIADNL--DGVKVVYVCSPNNPTG 159
>gnl|CDD|181255 PRK08153, PRK08153, histidinol-phosphate aminotransferase;
Provisional.
Length = 369
Score = 96.2 bits (240), Expect = 4e-23
Identities = 61/165 (36%), Positives = 88/165 (53%), Gaps = 21/165 (12%)
Query: 82 PF---EVLSIQLGRKPEDIVKIDANENPYGPPPEV----REALGQLKFPYIYPDPESRRL 134
PF E L Q GR +I ANE+ +GP P V REA ++ + Y DPE+ L
Sbjct: 18 PFVGPETLERQRGRPFR--ARIGANESGFGPSPSVIAAMREAAAEI---WKYGDPENHDL 72
Query: 135 RAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCP---PTFTMYEFDAAVNG 191
R ALA G+ ++I+VG G D L+ LI+R ++PGD +V PTF + A G
Sbjct: 73 RHALAAHHGVAPENIMVGEGIDGLLGLIVRLYVEPGDPVVTSLGAYPTFN---YHVAGFG 129
Query: 192 AAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSW 236
+V VP + D +++ + DA RE ++L +P+NP G SW
Sbjct: 130 GRLVTVPYRDDRE-DLDALLDAARRENAPLVYLANPDNPMG--SW 171
>gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase;
Provisional.
Length = 357
Score = 90.6 bits (225), Expect = 3e-21
Identities = 52/163 (31%), Positives = 84/163 (51%), Gaps = 11/163 (6%)
Query: 76 PYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPE----VREALGQLKFPYIYPDPES 131
Y+ E ++ +LG P+D+VK+ +NENP+GP P +REA ++ + YP
Sbjct: 11 AYRAGRGIEEVARELGLDPDDLVKLSSNENPHGPSPAAVEAIREAAERV---HSYPKASH 67
Query: 132 RRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNG 191
L AALA + + + + G D +D + R +LDPGD ++ P F Y A +
Sbjct: 68 ADLTAALADRWDVSPEQVWLANGGDGALDYLARAMLDPGDTVLVPDPGFAYYGMSARYHH 127
Query: 192 AAVVKVP--RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
V + P + DF + + DA + E + ++LTSP+NP G
Sbjct: 128 GEVREYPVSKADDFEQTADTVLDAYDGE--RIVYLTSPHNPTG 168
>gnl|CDD|223513 COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase
[Amino acid transport and metabolism].
Length = 393
Score = 90.4 bits (225), Expect = 5e-21
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 18/157 (11%)
Query: 92 RKPEDIVKIDANENPYGPPPEVREALGQL----KFPYIYPDPESRRLRAALA----KDSG 143
+ ED++ + E + P + EA + Y P LR A+A + G
Sbjct: 25 KGKEDVIDLSIGEPDFPTPEHIIEAAIEALEEGGTHY-TPSAGIPELREAIAEKYKRRYG 83
Query: 144 LE---SDHILVGCGADELIDLIMRCVLDPGDKIVDCP-PTFTMYEFDAAVNGAAVVKVPR 199
L+ + I+V GA E + L +L+PGD+++ P P + YE + G V VP
Sbjct: 84 LDVDPEEEIIVTAGAKEALFLAFLALLNPGDEVL-IPDPGYPSYEAAVKLAGGKPVPVPL 142
Query: 200 K---SDFSLNVELIADAVEREKPKCIFLTSPNNPDGR 233
+ F ++E + A+ K K I L SPNNP G
Sbjct: 143 DEEENGFKPDLEDLEAAI-TPKTKAIILNSPNNPTGA 178
>gnl|CDD|235311 PRK04781, PRK04781, histidinol-phosphate aminotransferase;
Provisional.
Length = 364
Score = 88.4 bits (219), Expect = 2e-20
Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 10/139 (7%)
Query: 98 VKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADE 157
V ++ANE+ + P + + + YPDP+ LR+ALA G + +L+G G+DE
Sbjct: 34 VWLNANESAWANPADPDASTRR------YPDPQPPGLRSALAALYGCAPEQLLIGRGSDE 87
Query: 158 LIDLIMRCVLDPG-DKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSD---FSLNVELIADA 213
IDL++R + PG D ++ PP F MY A + A +V+VP F +V I A
Sbjct: 88 AIDLLVRALCVPGRDAVLVTPPVFGMYAVCARLQNAPLVEVPLVDGADGFHADVPAIVAA 147
Query: 214 VEREKPKCIFLTSPNNPDG 232
K +FL SP+NP G
Sbjct: 148 ALASNAKLVFLCSPSNPAG 166
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 87.8 bits (218), Expect = 3e-20
Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 18/156 (11%)
Query: 95 EDIVKIDANENPYG--PPPEVREALGQL-------KFPYIYPDPESRRLRAALAKDS-GL 144
D + + +NE P V +A + PE R A S L
Sbjct: 1 TDKINLGSNEYLGDSGTLPAVAKAEKDALAGGTRNLYGPTDGLPELREALAKFLGRSPVL 60
Query: 145 ESDH---ILVGCGADELIDLIMRCV-LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK 200
+ D ++ G GA I+ ++ + L+PGD I+ PT+ Y + G VV+ P
Sbjct: 61 KLDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGGEVVRYPLY 120
Query: 201 S--DFSLNVELIADAVER--EKPKCIFLTSPNNPDG 232
S DF L+ + + A++ E K + TSP+NP G
Sbjct: 121 SSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTG 156
>gnl|CDD|235440 PRK05387, PRK05387, histidinol-phosphate aminotransferase;
Provisional.
Length = 353
Score = 87.5 bits (218), Expect = 4e-20
Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 28/172 (16%)
Query: 71 LRKLKPYQPILPFEVLSIQLGRKPED--IVKIDANENPYGPPPEVREAL-----GQLKFP 123
+R+L+PY P G +P+ ++K++ NENPY P P+V EA+ L+
Sbjct: 9 VRQLEPYVP-----------GEQPKLAKLIKLNTNENPYPPSPKVLEAIRAALGDDLR-- 55
Query: 124 YIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMY 183
+YPDP + LR A+A GL+ + + VG G+DE++ + ++ T++ Y
Sbjct: 56 -LYPDPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAFFNHDRPLLFPDITYSFY 114
Query: 184 EFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKC-IFLTSPNNPDGRF 234
A + G ++P DFS++VE + +P I +PN P G
Sbjct: 115 PVYAGLYGIPYEEIPLDDDFSIDVE------DYLRPNGGIIFPNPNAPTGIA 160
>gnl|CDD|134568 PRK01533, PRK01533, histidinol-phosphate aminotransferase;
Validated.
Length = 366
Score = 87.0 bits (215), Expect = 7e-20
Identities = 53/178 (29%), Positives = 87/178 (48%), Gaps = 23/178 (12%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDI---------VKIDANENPYGPPPEVREAL 117
++ L L+PY+P G+ PE + VK+ +NENP+G P V + L
Sbjct: 3 VKDQLSSLQPYKP-----------GKSPEQMKEVYGDHSFVKLASNENPFGCSPRVLDEL 51
Query: 118 GQLKFPY-IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDC 176
+ + +YPD + LR +A ++ + +L G G DE+I +I R VL GD IV
Sbjct: 52 QKSWLDHALYPDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAVLKAGDNIVTA 111
Query: 177 PPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234
TF Y A + G V +V + +++ I+ V+ K +++ +PNNP G +
Sbjct: 112 GATFPQYRHHAIIEGCEVKEVALNNGV-YDLDEISSVVD-NDTKIVWICNPNNPTGTY 167
>gnl|CDD|235053 PRK02610, PRK02610, histidinol-phosphate aminotransferase;
Provisional.
Length = 374
Score = 84.8 bits (210), Expect = 4e-19
Identities = 59/196 (30%), Positives = 90/196 (45%), Gaps = 24/196 (12%)
Query: 65 SFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPY 124
F+RS L +LK Y P P + + ++D NE PY PP++++ L L
Sbjct: 3 PFLRSDLAQLKAYHPH-PSGDADDAVIQLD----RLDTNEFPYDLPPDLKQKLAWLYQQG 57
Query: 125 I----YPDPESRRLRAALAK--------DSGLESDHILVGCGADELID--LIMRCVLDPG 170
I YPD L+ A+A+ S + +I VG G+DELI LI C+ G
Sbjct: 58 IESNRYPDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIATCLGGEG 117
Query: 171 DKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-SDFSLNVELIADAVEREKP---KCIFLTS 226
+V PTF+MY A G VV+V R F +++ A+E+ + + +F+
Sbjct: 118 SILV-AEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVH 176
Query: 227 PNNPDGRFSWTSSWIW 242
PN+P G + W
Sbjct: 177 PNSPTGNPLTAAELEW 192
>gnl|CDD|235749 PRK06225, PRK06225, aspartate aminotransferase; Provisional.
Length = 380
Score = 78.3 bits (193), Expect = 1e-16
Identities = 52/147 (35%), Positives = 78/147 (53%), Gaps = 8/147 (5%)
Query: 93 KPEDIVKIDANENPYGPPPEVREAL--GQLKFPY-IYPDPES-RRLRAALAKDSGLESDH 148
K ++++ + N N GP EVREA+ + Y YP PE LR + KD GL+ D
Sbjct: 26 KDKEMIWMGQNTNHLGPHEEVREAMIRCIEEGEYCKYPPPEGFPELRELILKDLGLDDDE 85
Query: 149 ILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS---DFSL 205
L+ GA E + L+MR L PGD V P + + + A+ GA V++VP S ++ L
Sbjct: 86 ALITAGATESLYLVMRAFLSPGDNAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKL 145
Query: 206 NVELIADAVEREKPKCIFLTSPNNPDG 232
EL+ + ++ E + I+L P NP G
Sbjct: 146 TPELVKENMD-ENTRLIYLIDPLNPLG 171
>gnl|CDD|179869 PRK04635, PRK04635, histidinol-phosphate aminotransferase;
Provisional.
Length = 354
Score = 77.8 bits (192), Expect = 1e-16
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 18/166 (10%)
Query: 68 RSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYP 127
R L L PYQ + ++G + + + I+ANE+P+ E + L +L YP
Sbjct: 13 RPELLALTPYQS-------ARRIGGRGD--IWINANESPFNN--EYKLDLARLNR---YP 58
Query: 128 DPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPG-DKIVDCPPTFTMYEFD 186
+ + L A + +G+ + IL GADE I+L++R +PG D I PT+ MY
Sbjct: 59 ECQPPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFCEPGQDSIACFGPTYGMYAIS 118
Query: 187 AAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
A V +P +D+ L ++ I + K +F+ +PNNP G
Sbjct: 119 AETFNVGVKALPLTADYQLPLDYIEQL---DGAKLVFICNPNNPTG 161
>gnl|CDD|233289 TIGR01140, L_thr_O3P_dcar, L-threonine-O-3-phosphate decarboxylase.
This family contains pyridoxal phosphate-binding class
II aminotransferases (see pfam00222) closely related to,
yet distinct from, histidinol-phosphate aminotransferase
(HisC). It is found in cobalamin biosynthesis operons in
Salmonella typhimurium and Bacillus halodurans (each of
which also has HisC) and has been shown to have
L-threonine-O-3-phosphate decarboxylase activity in
Salmonella. Although the gene symbol cobD was assigned
in Salmonella, cobD in other contexts refers to a
different cobalamin biosynthesis enzyme, modeled by
pfam03186 and called cbiB in Salmonella [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 330
Score = 77.2 bits (191), Expect = 2e-16
Identities = 49/147 (33%), Positives = 71/147 (48%), Gaps = 19/147 (12%)
Query: 89 QLGRKPEDIVKIDANENPYGPP-PEVR-EALGQLKFPYIYPDPESRRLRAALAKDSGLES 146
+ G PED + + NP GPP P + A + YPDPE LRAA A GL +
Sbjct: 11 RYGIPPEDWLDLSTGINPLGPPVPPIPLSAWAR------YPDPEYDELRAAAAAYYGLPA 64
Query: 147 DHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLN 206
+L GA E I L+ R +L PG +V PT++ Y G VV++P +
Sbjct: 65 ASVLPVNGAQEAIYLLPR-LLAPGRVLV-LAPTYSEYARAWRAAGHEVVELP-------D 115
Query: 207 VELIADAVEREKPKCIFLTSPNNPDGR 233
++ + A+E + + +PNNP GR
Sbjct: 116 LDRLPAALEEA--DLLVVCNPNNPTGR 140
>gnl|CDD|181651 PRK09105, PRK09105, putative aminotransferase; Provisional.
Length = 370
Score = 74.3 bits (183), Expect = 2e-15
Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 15/146 (10%)
Query: 94 PEDIVKIDANENPYGPPPEVREALGQL-----KFPYIYPDPESRRLRAALAKDSGLESDH 148
E V ++ANE P GP P R+A + ++ D LR A GL +DH
Sbjct: 42 AEGAVFLNANECPLGPSPAARDAAARSAALSGRYDLELED----DLRTLFAAQEGLPADH 97
Query: 149 ILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVE 208
++ G+ E ++ + P +V PT+ A GA V KVP ++D + +V+
Sbjct: 98 VMAYAGSSEPLNYAVLAFTSPTAGLVTADPTYEAGWRAADAQGAPVAKVPLRADGAHDVK 157
Query: 209 --LIADAVEREKPKCIFLTSPNNPDG 232
L AD I++ +PNNP G
Sbjct: 158 AMLAADP----NAGLIYICNPNNPTG 179
>gnl|CDD|180542 PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional.
Length = 354
Score = 71.2 bits (175), Expect = 2e-14
Identities = 45/152 (29%), Positives = 78/152 (51%), Gaps = 13/152 (8%)
Query: 89 QLGRKPEDIVKIDANENPYGPPPEVREA----LGQLKFPYIYPDPESRRLRAALAKDSGL 144
+ G I+ AN NP G P +++A L +L YPDP+ LR +A L
Sbjct: 13 EKGLTKNMILDFSANINPLGVPESLKQAITENLDKLVE---YPDPDYLELRKRIASFEQL 69
Query: 145 ESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVV--KVPRKSD 202
+ +++++G GA ELI I++ V P K++ PTF YE A + ++ +++
Sbjct: 70 DLENVILGNGATELIFNIVK-VTKP-KKVLILAPTFAEYERALKAFDAEIEYAELTEETN 127
Query: 203 FSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234
F+ N ++ + +E+ +FL +PNNP G+
Sbjct: 128 FAANEIVLEE--IKEEIDLVFLCNPNNPTGQL 157
>gnl|CDD|181212 PRK08056, PRK08056, threonine-phosphate decarboxylase; Provisional.
Length = 356
Score = 70.5 bits (173), Expect = 4e-14
Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 7/147 (4%)
Query: 89 QLGRKPEDIVKIDANENPYGPPPEVREAL-GQLKFPYIYPDPESRRLRAALAKDSGLESD 147
LG P+ ++ AN NP G P ++ A+ L YPD E R L ALA+ + +
Sbjct: 14 VLGISPDQLLDFSANINPLGMPVSLKRAIIDNLDCAERYPDVEYRHLHQALARHHQVPAS 73
Query: 148 HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSD--FSL 205
IL G G E I ++ L P ++ P F Y G + + + + L
Sbjct: 74 WILAGNGETESIFAVVS-GLKPRRAMI-VTPGFAEYRRALQQVGCEIRRYSLREADGWQL 131
Query: 206 NVELIADAVEREKPKCIFLTSPNNPDG 232
+ I +A+ + C+FL +PNNP G
Sbjct: 132 T-DAILEALTPD-LDCLFLCTPNNPTG 156
>gnl|CDD|180720 PRK06836, PRK06836, aspartate aminotransferase; Provisional.
Length = 394
Score = 67.5 bits (166), Expect = 4e-13
Identities = 45/148 (30%), Positives = 75/148 (50%), Gaps = 25/148 (16%)
Query: 105 NPYGPPPE-VREALGQL-------KFPYI----YPDPESRRLRAALAK------DSGLES 146
NP PPP V+EAL +L Y+ YP+ +R A+A+ + L +
Sbjct: 42 NPSVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPE-----VREAIAESLNRRFGTPLTA 96
Query: 147 DHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP-RKSDFSL 205
DHI++ CGA +++ ++ +L+PGD+++ P F Y F +G +V VP F
Sbjct: 97 DHIVMTCGAAGALNVALKAILNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQP 156
Query: 206 NVELIADAVEREKPKCIFLTSPNNPDGR 233
+++ + A+ K K + + SPNNP G
Sbjct: 157 DLDALEAAIT-PKTKAVIINSPNNPTGV 183
>gnl|CDD|236009 PRK07392, PRK07392, threonine-phosphate decarboxylase; Validated.
Length = 360
Score = 67.0 bits (164), Expect = 6e-13
Identities = 46/154 (29%), Positives = 64/154 (41%), Gaps = 8/154 (5%)
Query: 94 PEDIVKIDANENPYGPPPEVREALGQLKFPYI--YPDPESRRLRAALAKDSGLESDHILV 151
P+ I+ A+ NP GPP V A+ + YPDP+ R LR ALA+ L + IL
Sbjct: 21 PDAILDFSASINPLGPPESVIAAIQS-ALSALRHYPDPDYRELRLALAQHHQLPPEWILP 79
Query: 152 GCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIA 211
G GA EL+ R L + P F Y GA V ++P D +
Sbjct: 80 GNGAAELLTWAGR-ELAQLRAVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLR 138
Query: 212 DAVER--EKPKC-IFLTSPNNPDGRFSWTSSWIW 242
P + L +P+NP G+ W+ I
Sbjct: 139 LQTLPPQLTPNDGLLLNNPHNPTGKL-WSREAIL 171
>gnl|CDD|181082 PRK07682, PRK07682, hypothetical protein; Validated.
Length = 378
Score = 60.9 bits (148), Expect = 8e-11
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 147 DHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP----RKSD 202
D I+V GA + +D+ MR +++PGD+++ P+F Y V A V VP +++
Sbjct: 82 DEIIVTVGASQALDVAMRAIINPGDEVLIVEPSFVSYA--PLVTLAGGVPVPVATTLENE 139
Query: 203 FSLNVELIADAVEREKPKCIFLTSPNNPDG 232
F + I +A K K I L SPNNP G
Sbjct: 140 FKVQPAQI-EAAITAKTKAILLCSPNNPTG 168
>gnl|CDD|180404 PRK06108, PRK06108, aspartate aminotransferase; Provisional.
Length = 382
Score = 58.4 bits (142), Expect = 5e-10
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 134 LRAALAKDSG------LESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDA 187
LR ALA+ + I V + + L + ++ PGD++V P +
Sbjct: 66 LREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQALVGPGDEVVAVTPLWPNLVAAP 125
Query: 188 AVNGAAVVKVP---RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSWTSS 239
+ GA VV VP ++L+++ + A+ + + +F+ SPNNP G WT+S
Sbjct: 126 KILGARVVCVPLDFGGGGWTLDLDRLLAAIT-PRTRALFINSPNNPTG---WTAS 176
>gnl|CDD|235596 PRK05764, PRK05764, aspartate aminotransferase; Provisional.
Length = 393
Score = 58.2 bits (142), Expect = 6e-10
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 30/151 (19%)
Query: 94 PEDIVK-----IDANENPYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE 145
PE I + +D + Y P PE+REA+ A L +D+GL+
Sbjct: 46 PEHIKEAAIEALDDGKTKYTPAAGIPELREAI-----------------AAKLKRDNGLD 88
Query: 146 --SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSD- 202
++V GA + + +LDPGD+++ P + Y + G V VP +
Sbjct: 89 YDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVSYPEMVKLAGGVPVFVPTGEEN 148
Query: 203 -FSLNVELIADAVEREKPKCIFLTSPNNPDG 232
F L VE + A+ K K + L SP+NP G
Sbjct: 149 GFKLTVEQLEAAIT-PKTKALILNSPSNPTG 178
>gnl|CDD|236075 PRK07683, PRK07683, aminotransferase A; Validated.
Length = 387
Score = 58.2 bits (141), Expect = 6e-10
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 149 ILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKV-PRKSDFSLNV 207
I+V GA E ID+ R +L+PG +++ P + YE + GA V + R + F L
Sbjct: 92 IIVTIGASEAIDIAFRTILEPGTEVILPAPIYPGYEPIIRLCGAKPVFIDTRSTGFRLTA 151
Query: 208 ELIADAVEREKPKCIFLTSPNNPDG 232
E + +A+ EK +C+ L P+NP G
Sbjct: 152 EALENAIT-EKTRCVVLPYPSNPTG 175
>gnl|CDD|235985 PRK07309, PRK07309, aromatic amino acid aminotransferase;
Validated.
Length = 391
Score = 57.8 bits (140), Expect = 9e-10
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 26/142 (18%)
Query: 100 IDANENPYGPP---PEVREALGQL---KFPYIYPDPESRRLRAALAKDSGLESDHILVGC 153
IDAN++ Y E+R+A K+ Y PE + ILV
Sbjct: 56 IDANQSHYTGMAGLLELRQAAADFVKEKYNLDY-APE----------------NEILVTI 98
Query: 154 GADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKV-PRKSDFSLNVELIAD 212
GA E + + +L+PGDK++ P + YE + GA +V++ ++DF L E++
Sbjct: 99 GATEALSASLTAILEPGDKVLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEK 158
Query: 213 AV--EREKPKCIFLTSPNNPDG 232
A+ + +K K + L P NP G
Sbjct: 159 AILEQGDKLKAVILNYPANPTG 180
>gnl|CDD|224089 COG1167, ARO8, Transcriptional regulators containing a DNA-binding
HTH domain and an aminotransferase domain (MocR family)
and their eukaryotic orthologs [Transcription / Amino
acid transport and metabolism].
Length = 459
Score = 56.2 bits (136), Expect = 3e-09
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 32/137 (23%)
Query: 106 PYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLI 162
YGP PE+REA+ + L A E + I++ GA + +DL+
Sbjct: 127 QYGPTAGLPELREAI-------------AAYLLARRG--ISCEPEQIVITSGAQQALDLL 171
Query: 163 MRCVLDPGDKIVDCPPTFTMYEFDAAVN-----GAAVVKVPRKSDFSLNVELIADAVERE 217
+R +LDPGD ++ PT + A+ GA V+ VP + ++ E + +A+ +
Sbjct: 172 LRLLLDPGDTVLVEDPT-----YPGALQALEALGARVIPVPV-DEDGIDPEALEEALAQW 225
Query: 218 KPKCIFLTSPN--NPDG 232
KPK +++T P NP G
Sbjct: 226 KPKAVYVT-PTFQNPTG 241
>gnl|CDD|215089 PLN00175, PLN00175, aminotransferase family protein; Provisional.
Length = 413
Score = 52.2 bits (125), Expect = 6e-08
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 9/108 (8%)
Query: 134 LRAALA----KDSGLESD---HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFD 186
L +A+A KD+GL D + V G E I + +++PGD+++ P + YE
Sbjct: 96 LNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDSYEAT 155
Query: 187 AAVNGAAVVKVP-RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGR 233
++ GA + V R DF++ + + A K + I + +P+NP G+
Sbjct: 156 LSMAGAKIKTVTLRPPDFAVPEDELKAAFTS-KTRAILINTPHNPTGK 202
>gnl|CDD|181036 PRK07568, PRK07568, aspartate aminotransferase; Provisional.
Length = 397
Score = 52.2 bits (126), Expect = 6e-08
Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 9/107 (8%)
Query: 134 LRAALAK-----DSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAA 188
LR A AK +E D IL+ G E I M + DPGD+I+ P + Y A
Sbjct: 71 LREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAICDPGDEILVPEPFYANYNGFAT 130
Query: 189 VNGAAVVKVPRKSD--FSL-NVELIADAVEREKPKCIFLTSPNNPDG 232
G +V V K + F L + E I + K K I +++P NP G
Sbjct: 131 SAGVKIVPVTTKIEEGFHLPSKEEIEKLIT-PKTKAILISNPGNPTG 176
>gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional.
Length = 389
Score = 51.2 bits (123), Expect = 1e-07
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 22/142 (15%)
Query: 107 YGPPPEVREALGQLKFPYIYPDPESRRLRAA-------------LAKDSGLE---SDHIL 150
Y PPPE EAL +PE+ + +A L +D+G+E I+
Sbjct: 39 YPPPPEAIEALNNF-----LANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIV 93
Query: 151 VGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELI 210
V G++ + + DPGD+I+ P + +E + G + VP ++ L E I
Sbjct: 94 VTAGSNMAFMNAILAITDPGDEIILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAI 153
Query: 211 ADAVEREKPKCIFLTSPNNPDG 232
A+ K + I SPNNP G
Sbjct: 154 EQAIT-PKTRAIVTISPNNPTG 174
>gnl|CDD|236248 PRK08361, PRK08361, aspartate aminotransferase; Provisional.
Length = 391
Score = 50.6 bits (121), Expect = 2e-07
Identities = 34/152 (22%), Positives = 73/152 (48%), Gaps = 12/152 (7%)
Query: 92 RKPEDIVKIDANENPYGPPPEVREALGQL---KFPYIYPDPESRRLRAALAK------DS 142
K E+++ + E + P ++EA + + + P+ LR A+A+
Sbjct: 30 SKMENVISLGIGEPDFDTPKNIKEAAKRALDEGWTHYTPNAGIPELREAIAEYYKKFYGV 89
Query: 143 GLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK-- 200
++ D+++V GA E L +L+ GD+++ P F Y DA + A +++P +
Sbjct: 90 DVDVDNVIVTAGAYEATYLAFESLLEEGDEVIIPDPAFVCYVEDAKIAEAKPIRIPLREE 149
Query: 201 SDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
++F + + + + + + + + I + PNNP G
Sbjct: 150 NEFQPDPDELLELITK-RTRMIVINYPNNPTG 180
>gnl|CDD|236095 PRK07777, PRK07777, aminotransferase; Validated.
Length = 387
Score = 48.9 bits (117), Expect = 7e-07
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 20/139 (14%)
Query: 110 PPEVREAL------GQLKFPYIYPDPESRRLRAALAKDS----GLESD---HILVGCGAD 156
PPE+ EA G ++P P P LRAA+A GLE D +LV GA
Sbjct: 39 PPEMLEAAQEAIAGGVNQYP---PGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGAT 95
Query: 157 ELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSD---FSLNVELIADA 213
E I + +++PGD+++ P + Y A+ GA V VP D F+L+++ + A
Sbjct: 96 EAIAAAVLGLVEPGDEVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAA 155
Query: 214 VEREKPKCIFLTSPNNPDG 232
V + + + + SP+NP G
Sbjct: 156 VT-PRTRALIVNSPHNPTG 173
>gnl|CDD|173269 PRK14808, PRK14808, histidinol-phosphate aminotransferase;
Provisional.
Length = 335
Score = 48.8 bits (116), Expect = 8e-07
Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 18/144 (12%)
Query: 96 DIVKIDANENPYGPPPEVREAL------GQLKFPYIYPDPE-SRRLRAALAKDSGLESDH 148
D + NENP+ P ++ + + L+ Y PD E ++ + L D L ++
Sbjct: 20 DRTYLALNENPFPFPEDLVDEVFRRLNSDTLRIYYDSPDEELIEKILSYLDTDF-LSKNN 78
Query: 149 ILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVE 208
+ VG GADE+I ++M D+ V PPT++ Y A GA ++VP D +
Sbjct: 79 VSVGNGADEIIYVMMLMF----DRSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRI--- 131
Query: 209 LIADAVEREKPKCIFLTSPNNPDG 232
V + +F+ +PNNP G
Sbjct: 132 ---PEVNVGEGDVVFIPNPNNPTG 152
>gnl|CDD|169399 PRK08354, PRK08354, putative aminotransferase; Provisional.
Length = 311
Score = 47.8 bits (114), Expect = 1e-06
Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 16/145 (11%)
Query: 91 GRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHIL 150
G + E ++ A+ NPY PP + E + K L +K G + I+
Sbjct: 4 GIREEGLIDFSASVNPY-PPEWLDEMFERAK-EISGRYTYYEWLEEEFSKLFG---EPIV 58
Query: 151 VGCGADELIDLIMRCVLDPGDKIVDCP-PTFTMYEFDAAVNGAAVVKVPRKSDFSLNVEL 209
+ G E + LI L D+ V P T+ YE A A ++K +D EL
Sbjct: 59 ITAGITEALYLIGILALR--DRKVIIPRHTYGEYERVARFFAARIIK--GPNDPEKLEEL 114
Query: 210 IADAVEREKPKCIFLTSPNNPDGRF 234
+ E+ +F +PNNPDG+F
Sbjct: 115 V------ERNSVVFFCNPNNPDGKF 133
>gnl|CDD|132578 TIGR03539, DapC_actino, succinyldiaminopimelate transaminase. This
family of actinobacterial succinyldiaminopimelate
transaminase enzymes (DapC) are members of the pfam00155
superfamily. Many of these genes appear adjacent to
other genes encoding enzymes of the lysine biosynthesis
via diaminopimelate pathway (GenProp0125).
Length = 357
Score = 46.3 bits (110), Expect = 6e-06
Identities = 37/136 (27%), Positives = 52/136 (38%), Gaps = 26/136 (19%)
Query: 110 PPEVREALGQLK----FPYIYPDPESRRLRAALA-------KDSGLESDHILVGCGADEL 158
PP +R AL +P + PE LR A+ GL+ +L G EL
Sbjct: 36 PPLIRAALAAAADAPGYPQTWGTPE---LREAIVDWLERRRGVPGLDPTAVLPVIGTKEL 92
Query: 159 IDLIMRCV-LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVERE 217
+ + + L PGD +V + YE A + GA V ++
Sbjct: 93 VAWLPTLLGLGPGDTVVIPELAYPTYEVGALLAGATPVAADD-----------PTELDPV 141
Query: 218 KPKCIFLTSPNNPDGR 233
P I+L SP NP GR
Sbjct: 142 GPDLIWLNSPGNPTGR 157
>gnl|CDD|180537 PRK06348, PRK06348, aspartate aminotransferase; Provisional.
Length = 384
Score = 45.5 bits (108), Expect = 1e-05
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 128 DPESRR-LRAALAKDSGL--ESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE 184
D E + +K+ L + + I+ GA + L ++ +LDPGD+++ P FT Y+
Sbjct: 68 DVELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPYK 127
Query: 185 FDAAVNGAAVVKVP--RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
+ G + + + F +NV+ + + K K I L SPNNP G
Sbjct: 128 DQIEMVGGKPIILETYEEDGFQINVKKLEALIT-SKTKAIILNSPNNPTG 176
>gnl|CDD|234249 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase. This
family of succinyldiaminopimelate transaminases (DapC)
includes the experimentally characterized enzyme from
Bordatella pertussis. The majority of genes in this
family are proximal to genes encoding components of the
lysine biosynthesis via diaminopimelate pathway
(GenProp0125).
Length = 393
Score = 45.5 bits (108), Expect = 1e-05
Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 28/184 (15%)
Query: 71 LRKLKPYQPILPFEVLSIQL-GRKP---EDIVKIDANENPYGPPPEV-----REALGQL- 120
L +L+PY PFE L+ L G P + + + E P P P RE L L
Sbjct: 4 LSRLQPY----PFEKLAALLAGVTPPASKPPIALSIGE-PKHPTPAFVLEALRENLHGLS 58
Query: 121 KFPYIYPDPESRRLRAALAK-----DSGLESD-HILVGCGADELIDLIMRCVLDPGDK-I 173
+P PE R+ A + +G++ + H+L G E + + V++PG +
Sbjct: 59 TYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPL 118
Query: 174 VDCP-PTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVERE---KPKCIFLTSPNN 229
V P P + +YE A + GA + ++ + DAV + + +F+ SP N
Sbjct: 119 VVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDF--DAVPESVWRRCQLLFVCSPGN 176
Query: 230 PDGR 233
P G
Sbjct: 177 PTGA 180
>gnl|CDD|234250 TIGR03540, DapC_direct, LL-diaminopimelate aminotransferase. This
clade of the pfam00155 superfamily of aminotransferases
includes several which are adjacent to elements of the
lysine biosynthesis via diaminopimelate pathway
(GenProp0125). Every member of this clade is from a
genome which possesses most of the lysine biosynthesis
pathway but lacks any of the known aminotransferases,
succinylases, desuccinylases, acetylases or deacetylases
typical of the acylated versions of this pathway nor do
they have the direct, NADPH-dependent enzyme (ddh).
Although there is no experimental characterization of
any of the sequences in this clade, a direct pathway is
known in plants and Chlamydia and the clade containing
the Chlamydia gene is a neighboring one in the same
pfam00155 superfamily so it seems quite reasonable that
these enzymes catalyze the same transformation.
Length = 383
Score = 44.3 bits (105), Expect = 3e-05
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 154 GADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIA 211
G+ E I I ++PGD ++ P + +Y G ++P K + F + + I
Sbjct: 99 GSKEGIAHIPLAFVNPGDIVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIP 158
Query: 212 DAVEREKPKCIFLTSPNNPDG 232
+ + + K K +F+ PNNP G
Sbjct: 159 EDIAK-KAKLMFINYPNNPTG 178
>gnl|CDD|236119 PRK07865, PRK07865, N-succinyldiaminopimelate aminotransferase;
Reviewed.
Length = 364
Score = 41.8 bits (99), Expect = 2e-04
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 20/133 (15%)
Query: 110 PPEVREALGQLKFPYIYP----DPESRR-LRAALAKD---SGLESDHILVGCGADELIDL 161
PP ++EAL YP PE R + LA+ +GL+ +L G+ EL+
Sbjct: 42 PPVIQEALAAAADAPGYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAW 101
Query: 162 IMRCV-LDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPK 220
+ + L PGD +V + YE A + GA VV+ SL + ++P
Sbjct: 102 LPTLLGLGPGDVVVIPELAYPTYEVGARLAGATVVRAD-----SL------TELGPQRPA 150
Query: 221 CIFLTSPNNPDGR 233
I+L SP+NP GR
Sbjct: 151 LIWLNSPSNPTGR 163
>gnl|CDD|188462 TIGR03947, viomycin_VioD, capreomycidine synthase. Members of this
family are the enzyme capreomycidine synthase, which
performs the second of two steps in the biosynthesis of
2S,3R-capreomycidine from arginine. Capreomycidine is an
unusual amino acid used by non-ribosomal peptide
synthases (NRPS) to make the tuberactinomycin class of
peptide antibiotic. The best characterized member is
VioD from the biosynthetic pathway for viomycin
[Cellular processes, Biosynthesis of natural products].
Length = 359
Score = 40.5 bits (95), Expect = 4e-04
Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 133 RLRAALAKDSGLESDH-ILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNG 191
LRAA+A H ++ G+ E I L++ +L PGD++V P + A G
Sbjct: 55 GLRAAIADRWRGGDAHVVMTTHGSSEAIYLVLTALLRPGDEVVVVDPAYHSLSHLAVATG 114
Query: 192 AAVVKVPRKSDFSLNVELIA-DAVEREKPKCIFLTSPNNPDGR 233
V P + +L A A+ + + + + P+NP G
Sbjct: 115 CEVRPWPLLAVRGFRPDLDALRALLTPRTRAVVVNFPHNPTGA 157
>gnl|CDD|181749 PRK09276, PRK09276, LL-diaminopimelate aminotransferase;
Provisional.
Length = 385
Score = 40.7 bits (96), Expect = 4e-04
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 154 GADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIA 211
G+ E I I ++PGD ++ P + +Y+ G +P K + F +++ I
Sbjct: 101 GSKEGIAHIPLAFVNPGDVVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIP 160
Query: 212 DAVEREKPKCIFLTSPNNPDG 232
+ V + K K +F+ PNNP G
Sbjct: 161 EDVAK-KAKLMFINYPNNPTG 180
>gnl|CDD|213963 TIGR04350, C_S_lyase_PatB, putative C-S lyase. Members of this
subfamily are probable C-S lyases from a family of
pyridoxal phosphate-dependent enzymes that tend to be
(mis)annotated as probable aminotransferases. One member
is PatB of Bacillus subtilis, a proven C-S-lyase.
Another is the virulence factor cystalysin from
Treponema denticola, whose hemolysin activity may stem
from H2S production. Members of the seed alignment occur
next to examples of the enzyme 5-histidylcysteine
sulfoxide synthase, from ovothiol A biosynthesis, and
would be expected to perform a C-S cleavage of
5-histidylcysteine sulfoxide to leave
1-methyl-4-mercaptohistidine (ovothiol A).
Length = 384
Score = 40.0 bits (94), Expect = 7e-04
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 16/142 (11%)
Query: 110 PPEVREALGQ-LKFP-YIYPDPESRRLRAA---LAK--DSGLESDHILVGCGADELIDLI 162
PP V EAL Q L+ P + Y P A LA+ ++ + I+ G +
Sbjct: 40 PPAVLEALKQRLEHPVFGYTLPPDSLYAAVINWLAQRHGWQIDPEWIVFLPGVVPSLFAA 99
Query: 163 MRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSD---FSLNVELIADAVERE 217
+R + PG+ ++ P + F +AV NG +V P K D + ++E + DA+ E
Sbjct: 100 VRALTAPGEGVIVQTPVY--PPFLSAVKSNGRELVLNPLKLDPGRYRFDLEDLEDAI-TE 156
Query: 218 KPKCIFLTSPNNPDGRFSWTSS 239
K + + L SP+NP GR WT
Sbjct: 157 KARLLLLCSPHNPVGRV-WTRE 177
>gnl|CDD|178004 PLN02376, PLN02376, 1-aminocyclopropane-1-carboxylate synthase.
Length = 496
Score = 40.1 bits (93), Expect = 7e-04
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 20/119 (16%)
Query: 132 RRLRAALAKDSG--------LESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMY 183
++ R A+A G + + +++ GA + IM C+ DPGD + P + +
Sbjct: 97 KKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCLADPGDVFLIPSPYYAAF 156
Query: 184 EFDAA-VNGAAVVKVPRKSDFSLNVELIADAVE---------REKPKCIFLTSPNNPDG 232
+ D G ++ VP S S N +L DA + +K K + LT+P+NP G
Sbjct: 157 DRDLRWRTGVEIIPVPCSS--SDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLG 213
>gnl|CDD|224090 COG1168, MalY, Bifunctional PLP-dependent enzyme with
beta-cystathionase and maltose regulon repressor
activities [Amino acid transport and metabolism].
Length = 388
Score = 39.2 bits (92), Expect = 0.001
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 21/143 (14%)
Query: 110 PPEVREALGQ----LKFPYIYPDPESRRLRAALAK------DSGLESDHILVGCGADELI 159
PPE+ EAL + F Y Y E L AA+A ++ + I+ G I
Sbjct: 40 PPEIIEALRERVDHGVFGYPYGSDE---LYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGI 96
Query: 160 DLIMRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSD---FSLNVELIADAV 214
L +R + PGD +V P + F A+ NG V++ P D + ++ + + A
Sbjct: 97 SLAIRALTKPGDGVVIQTPVY--PPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAF 154
Query: 215 EREKPKCIFLTSPNNPDGRFSWT 237
E+ K L +P+NP GR WT
Sbjct: 155 VDERVKLFILCNPHNPTGR-VWT 176
>gnl|CDD|181268 PRK08175, PRK08175, aminotransferase; Validated.
Length = 395
Score = 38.9 bits (91), Expect = 0.001
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 16/153 (10%)
Query: 92 RKPEDIVKIDANENPYGP-PPEVREALGQL-KFPYIYPDPESR---RLRAALAK------ 140
R+ EDI+ NP GP PP + E L ++ + P + SR RLR A+++
Sbjct: 26 RRGEDIIDFSMG-NPDGPTPPHIVEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRY 84
Query: 141 DSGLESD-HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR 199
D ++ + +V G+ E + +M LD GD ++ P++ ++ + A + GA V VP
Sbjct: 85 DVDIDPESEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPL 144
Query: 200 KSDFSLNVELIADAVERE--KPKCIFLTSPNNP 230
EL A+ KPK + L P+NP
Sbjct: 145 VEGVDFFNEL-ERAIRESYPKPKMMILGFPSNP 176
>gnl|CDD|181026 PRK07550, PRK07550, hypothetical protein; Provisional.
Length = 386
Score = 38.4 bits (90), Expect = 0.002
Identities = 29/142 (20%), Positives = 53/142 (37%), Gaps = 19/142 (13%)
Query: 106 PYGPPPEVREALGQL-------KFPYIYPDPESRRLRAALAKDSG------LESDHILVG 152
Y PPPE+ AL + + + PE LR A A + + + +
Sbjct: 40 GYPPPPELLRALAEAAADPAAHLYGPVEGLPE---LREAYAAHYSRLYGAAISPEQVHIT 96
Query: 153 CGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSL--NVELI 210
G ++ M + GD+++ P + ++ + G V +P L +
Sbjct: 97 SGCNQAFWAAMVTLAGAGDEVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAA 156
Query: 211 ADAVEREKPKCIFLTSPNNPDG 232
+ + + I L +PNNP G
Sbjct: 157 EALI-TPRTRAIALVTPNNPTG 177
>gnl|CDD|181081 PRK07681, PRK07681, aspartate aminotransferase; Provisional.
Length = 399
Score = 38.6 bits (90), Expect = 0.002
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 156 DELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADA 213
D L+ L M +PGD I+ P +T YE + GA +P K +DF ++ELI +
Sbjct: 104 DGLVHLPM-VYANPGDIILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEE 162
Query: 214 VEREKPKCIFLTSPNNP 230
+ +K K + L P NP
Sbjct: 163 I-ADKAKMMILNFPGNP 178
>gnl|CDD|180403 PRK06107, PRK06107, aspartate aminotransferase; Provisional.
Length = 402
Score = 38.6 bits (90), Expect = 0.002
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 12/155 (7%)
Query: 89 QLGRKPEDIVKIDANENPYGPPPEVREAL------GQLKFPYIYPDPESRR-LRAALAKD 141
+L IV + E + P +++A G+ K+ + P R+ + A L +
Sbjct: 27 ELRAAGRSIVDLTVGEPDFDTPDHIKQAAVAAIERGETKYTLVNGTPALRKAIIAKLERR 86
Query: 142 SGLE--SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGA--AVVKV 197
+GL + I VG GA + I L + L+ GD+++ P + Y N +V
Sbjct: 87 NGLHYADNEITVGGGAKQAIFLALMATLEAGDEVIIPAPYWVSYPDMVLANDGTPVIVAC 146
Query: 198 PRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
P + F L E + A+ + + + L +P+NP G
Sbjct: 147 PEEQGFKLTPEALEAAIT-PRTRWLILNAPSNPTG 180
>gnl|CDD|181642 PRK09082, PRK09082, methionine aminotransferase; Validated.
Length = 386
Score = 38.0 bits (89), Expect = 0.003
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 27/136 (19%)
Query: 105 NPYGPP----PEVREALGQLKFPYIY---PDPESRRLRAALAKDSGLESDHILVGCGADE 157
N Y PP +REA+ K +Y D +S I V GA E
Sbjct: 61 NQY-PPMTGVAALREAIAA-KTARLYGRQYDADSE----------------ITVTAGATE 102
Query: 158 LIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP-RKSDFSLNVELIADAVER 216
+ + ++ PGD+++ P++ Y + G V+V + DF ++ + A A+
Sbjct: 103 ALFAAILALVRPGDEVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAIS- 161
Query: 217 EKPKCIFLTSPNNPDG 232
+ + I L +P+NP G
Sbjct: 162 PRTRLIILNTPHNPSG 177
>gnl|CDD|181402 PRK08363, PRK08363, alanine aminotransferase; Validated.
Length = 398
Score = 37.1 bits (86), Expect = 0.006
Identities = 43/154 (27%), Positives = 63/154 (40%), Gaps = 29/154 (18%)
Query: 96 DIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPES--RRLRAALAK------DSGLES 146
D VK D + PP ++EA + +K + Y P LR A+ K +
Sbjct: 39 DPVKFD-----FQPPEHMKEAYCRAIKEGHNYYGPSEGLPELREAIVKREKRKNGVDITP 93
Query: 147 DHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLN 206
D + V E + LI +LDPGD+I+ P++ Y G VP
Sbjct: 94 DDVRVTAAVTEALQLIFGALLDPGDEILIPGPSYPPYTGLVKFYGG----VPV---EYRT 146
Query: 207 VEL------IADAVER--EKPKCIFLTSPNNPDG 232
+E I D ++ EK K I + +PNNP G
Sbjct: 147 IEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTG 180
>gnl|CDD|188123 TIGR01265, tyr_nico_aTase, tyrosine/nicotianamine family
aminotransferase. This subfamily of pyridoxal
phosphate-dependent enzymes includes known examples of
both tyrosine aminotransferase from animals and
nicotianamine aminotransferase from barley.
Length = 403
Score = 36.9 bits (86), Expect = 0.007
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 144 LESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVK---VPRK 200
L +D +++ G + I++ + + +PG I+ P F +Y+ AA +G V +P K
Sbjct: 94 LTADDVVLTSGCSQAIEICIEALANPGANILVPRPGFPLYDTRAAFSGLEVRLYDLLPEK 153
Query: 201 S---DFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
D +E +AD EK I + +P+NP G
Sbjct: 154 DWEIDLD-GLESLAD----EKTVAIVVINPSNPCG 183
>gnl|CDD|150189 pfam09432, THP2, Tho complex subunit THP2. The THO complex plays a
role in coupling transcription elongation to mRNA
export. It is composed of subunits THP2, HPR1, THO2 and
MFT1.
Length = 132
Score = 35.1 bits (81), Expect = 0.009
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 86 LSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAK 140
L+ QL R + N+ PPPE++ L Q Y P+ LRA L K
Sbjct: 15 LAKQLERSDFSSEVVLVNKWG--PPPELQAILKQ----YDAEAPDIEVLRAELLK 63
>gnl|CDD|223699 COG0626, MetC, Cystathionine beta-lyases/cystathionine
gamma-synthases [Amino acid transport and metabolism].
Length = 396
Score = 36.0 bits (84), Expect = 0.011
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 159 IDLIMRCVLDPGDKIV---DC-PPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAV 214
I + +L GD ++ D T+ ++E G V V D + L A A+
Sbjct: 91 ISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFV----DPGDDEALEA-AI 145
Query: 215 EREKPKCIFLTSPNNP 230
+ K +FL +P+NP
Sbjct: 146 KEPNTKLVFLETPSNP 161
>gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase.
Length = 409
Score = 35.7 bits (82), Expect = 0.020
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Query: 129 PESRRLRAA-LAKD--SGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF 185
P++RR A L++D L D + + G + ID+ + + PG I+ P F +YE
Sbjct: 76 PQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSMLARPGANILLPRPGFPIYEL 135
Query: 186 DAAVNGAAVVKVPRKSDFSLNVELIADAVER---EKPKCIFLTSPNNPDG 232
AA V V + V+L DAVE + + + +P NP G
Sbjct: 136 CAAFRHLEVRYVDLLPEKGWEVDL--DAVEALADQNTVALVIINPGNPCG 183
>gnl|CDD|181219 PRK08068, PRK08068, transaminase; Reviewed.
Length = 389
Score = 35.3 bits (82), Expect = 0.024
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 165 CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVEREKPKCI 222
C+++PGD I+ P + Y A+ A +P +++F + I + V EK K +
Sbjct: 113 CLMNPGDTILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEV-AEKAKLM 171
Query: 223 FLTSPNNPDG 232
+L PNNP G
Sbjct: 172 YLNYPNNPTG 181
>gnl|CDD|181738 PRK09265, PRK09265, aminotransferase AlaT; Validated.
Length = 404
Score = 35.2 bits (82), Expect = 0.025
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 13/97 (13%)
Query: 143 GLESDHILVGCGADELIDLIMRCVLDPGDKI-VDCP--PTFTMYEFDAAVN---GAAV-V 195
++ D I +G G ELI + M+ +L+ GD++ V P P +T AAV+ G V
Sbjct: 92 DVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLWT-----AAVSLSGGKPVHY 146
Query: 196 KVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
++ + +++ I + + K I + +PNNP G
Sbjct: 147 LCDEEAGWFPDLDDIRSKIT-PRTKAIVIINPNNPTG 182
>gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing
protein/aminotransferase; Provisional.
Length = 517
Score = 35.1 bits (81), Expect = 0.025
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 142 SGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVN---GAAVVKV- 197
++ D I G G ELI+L M +LD GD+++ P + ++ A VN G AV
Sbjct: 204 PNVDVDDIYTGNGVSELINLSMSALLDDGDEVLIPSPDYPLWT--ACVNLAGGTAVHYRC 261
Query: 198 PRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
+S++ +++ I + + K I + +PNNP G
Sbjct: 262 DEQSEWYPDIDDIRSKIT-SRTKAIVIINPNNPTG 295
>gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional.
Length = 412
Score = 35.1 bits (81), Expect = 0.028
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 16/139 (11%)
Query: 100 IDANE-NPYGP---PPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGA 155
+D+ E N Y P PE REA+ L++ + KD ++++ G
Sbjct: 63 VDSQECNGYPPTVGSPEAREAVATYWRNSFVHKES---LKSTIKKD------NVVLCSGV 113
Query: 156 DELIDLIMRCVLDPGDKIVDCPPTFTMYEF--DAAVNGAAVVKVPRKSDFSLNVELIADA 213
I + + + D GD I+ P F YE A + D+ +++ I
Sbjct: 114 SHAILMALTALCDEGDNILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRL 173
Query: 214 VEREKPKCIFLTSPNNPDG 232
V+ ++ K + +T+P+NP G
Sbjct: 174 VD-DRTKALIMTNPSNPCG 191
>gnl|CDD|180937 PRK07337, PRK07337, aminotransferase; Validated.
Length = 388
Score = 33.9 bits (78), Expect = 0.065
Identities = 46/178 (25%), Positives = 71/178 (39%), Gaps = 31/178 (17%)
Query: 78 QPILPFEVLSI-----QLGRKPEDIVKIDANENPYGPPPEVREAL------------GQL 120
I PF V+ + L R DI+ + E + P V EA L
Sbjct: 8 DAIEPFYVMELAKEAQALERAGRDIIHMGIGEPDFTAPEPVVEAAARALRRGVTQYTSAL 67
Query: 121 KFPYIYPDPESRRLRAALAKDSGLESD--HILVGCGADELIDLIMRCVLDPGDKIVDCPP 178
P + A A+ GL+ I+V GA + L +++ GD+++ P
Sbjct: 68 GLA-----PLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACLALVERGDEVLMPDP 122
Query: 179 TFTM-YEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER---EKPKCIFLTSPNNPDG 232
++ F AA G V+ VP S + +L A VE E+ + + L SP+NP G
Sbjct: 123 SYPCNRHFVAAAEGRPVL-VP--SGPAERFQLTAADVEAAWGERTRGVLLASPSNPTG 177
>gnl|CDD|223780 COG0708, XthA, Exonuclease III [DNA replication, recombination, and
repair].
Length = 261
Score = 33.0 bits (76), Expect = 0.10
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 21/93 (22%)
Query: 94 PEDI-----VKIDANENPYGPPPEVREALGQLK-------FPYIYPDPE-----SRRLRA 136
PE+I K NE G PE R +L F +P+PE R A
Sbjct: 153 PEEIDVANPKKRWLNEGNSGFLPEERAWFRRLLNAGFVDTFRLFHPEPEKYTWWDYRANA 212
Query: 137 ALAKDSGLESDHILVGCGADELIDLIMRCVLDP 169
A ++ G D+ILV + L D + +D
Sbjct: 213 A-RRNRGWRIDYILV---SPALADRLKDAGIDR 241
>gnl|CDD|181595 PRK08960, PRK08960, hypothetical protein; Provisional.
Length = 387
Score = 33.1 bits (76), Expect = 0.12
Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 9/107 (8%)
Query: 134 LRAALA----KDSGLESD--HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE-FD 186
LR A+A + G++ D ILV G + L ++DPG + P + F
Sbjct: 74 LREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLLADPGYPCNRHFL 133
Query: 187 AAVNGAAV-VKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
V GAA V V S + L L+ + + SP NP G
Sbjct: 134 RLVEGAAQLVPVGPDSRYQLTPALV-ERHWNADTVGALVASPANPTG 179
>gnl|CDD|215074 PLN00145, PLN00145, tyrosine/nicotianamine aminotransferase;
Provisional.
Length = 430
Score = 32.0 bits (73), Expect = 0.23
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 129 PESRRLRAALAKD--SGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFD 186
P R + L++D L +D I + G + I++IM + PG I+ P + +YE
Sbjct: 98 PARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVLAQPGANILLPRPGYPLYEAR 157
Query: 187 AAVNGAAVVK---VPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
A +G V +P + + +++E + +A+ E + + +PNNP G
Sbjct: 158 AVFSGLEVRHFDLLPER-GWEVDLEGV-EALADENTVAMVIINPNNPCG 204
>gnl|CDD|236128 PRK07908, PRK07908, hypothetical protein; Provisional.
Length = 349
Score = 31.9 bits (73), Expect = 0.28
Identities = 41/117 (35%), Positives = 52/117 (44%), Gaps = 18/117 (15%)
Query: 108 GPPPEVRE----ALGQLKFPYIYPDPE-SRRLRAALAKDSGLESDHILVGCGADELIDLI 162
PP +RE LG L YP E RR RAA+A G D +L+ GA E L+
Sbjct: 35 TPPEWLRERLAARLGDLA---AYPSTEDERRARAAVAARHGRTPDEVLLLAGAAEGFALL 91
Query: 163 MRCVLDPGDKIVDCPPTFTMYEFDAAVNGA--AVVKVPRKSDFSLNVELI---ADAV 214
R L P V P+FT E +AA+ A V +V F L+ + AD V
Sbjct: 92 AR--LRPRRAAV-VHPSFT--EPEAALRAAGIPVHRVVLDPPFRLDPAAVPDDADLV 143
>gnl|CDD|217689 pfam03717, PBP_dimer, Penicillin-binding Protein dimerisation
domain. This domain is found at the N terminus of Class
B High Molecular Weight Penicillin-Binding Proteins. Its
function has not been precisely defined, but is strongly
implicated in PBP polymerisation. The domain forms a
largely disordered 'sugar tongs' structure.
Length = 167
Score = 31.1 bits (71), Expect = 0.31
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 90 LGRKPEDIVKI--DANENPYGP-------PPEVREALGQLKFPYIYPDPESRR 133
LG PE+I+K + + Y P PE + +LK P + + E +R
Sbjct: 47 LGLDPEEILKKLKEKDAKSYEPVVLKRNLSPEEAARIKELKLPGVSIEEEPKR 99
>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein.
This model describes a subfamily of probable pyridoxal
phosphate-dependent enzymes in the aminotransferase
class V family. Related families contain members active
as cysteine desulfurases, selenocysteine lyases, or
both. The members of this family form a distinct clade
and all are shorter at the N-terminus. The function of
this subfamily is unknown [Unknown function, Enzymes of
unknown specificity].
Length = 376
Score = 32.0 bits (73), Expect = 0.31
Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 28/148 (18%)
Query: 107 YGPPPEVREALGQ-LKFPYIYPDPESRRL-----------RAALAKDSGL-ESDHILVGC 153
Y P EV EA+ K P RL R LAK S H++
Sbjct: 10 YPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTN 69
Query: 154 GADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV---------NGAAVVKVPRKSDFS 204
A +++ ++ +L GD ++ T E ++ G + V ++
Sbjct: 70 NATTALNIALKGLLKEGDHVIT-----TPMEHNSVARPLECLKEQIGVEITIVKCDNEGL 124
Query: 205 LNVELIADAVEREKPKCIFLTSPNNPDG 232
++ E I A+ + K I ++ +N G
Sbjct: 125 ISPERIKRAI-KTNTKLIVVSHASNVTG 151
>gnl|CDD|188122 TIGR01264, tyr_amTase_E, tyrosine aminotransferase, eukaryotic.
This model describes tyrosine aminotransferase as found
in animals and Trypanosoma cruzi. It is the first enzyme
of a pathway of tyrosine degradation via homogentisate.
Several plant enzyme designated as probable tyrosine
aminotransferases are very closely related to an
experimentally demonstrated nicotianamine
aminotransferase, an enzyme in a siderophore (iron
uptake chelator) biosynthesis pathway. These plant
sequences are excluded from the model seed and score
between the trusted an noise cutoffs [Energy metabolism,
Amino acids and amines].
Length = 401
Score = 31.3 bits (71), Expect = 0.40
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 135 RAALAK-----DSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV 189
R A+A D +E+D +++ G I++ + + + G I+ P F +Y A
Sbjct: 79 REAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAALANAGQNILVPRPGFPLYRTLAES 138
Query: 190 NGAAVVKVPRKSDFSLNVELIA-DAVEREKPKCIFLTSPNNPDG 232
G V D S ++L +++ EK + + +P+NP G
Sbjct: 139 MGIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALVVNNPSNPCG 182
>gnl|CDD|235989 PRK07324, PRK07324, transaminase; Validated.
Length = 373
Score = 31.4 bits (72), Expect = 0.41
Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 9/123 (7%)
Query: 115 EALGQLKFPY--IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDK 172
+ LGQ K Y I PE + A+L + ++ ++IL GA L++ +++PGD
Sbjct: 49 QELGQKKLTYGWIEGSPEFKEAVASLYQ--NVKPENILQTNGATGANFLVLYALVEPGDH 106
Query: 173 IVDCPPTFT-MYEFDAAVNGAAV--VKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNN 229
++ PT+ +Y+ ++ GA V ++ ++ + +++ + V R K I + + NN
Sbjct: 107 VISVYPTYQQLYDIPESL-GAEVDYWQLKEENGWLPDLDELRRLV-RPNTKLICINNANN 164
Query: 230 PDG 232
P G
Sbjct: 165 PTG 167
>gnl|CDD|223950 COG1019, COG1019, Predicted nucleotidyltransferase [General
function prediction only].
Length = 158
Score = 30.0 bits (68), Expect = 0.78
Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 15/62 (24%)
Query: 61 LTGDSFIRSHLRKLKPYQPILPFEV----LSIQLGRKPED---IVKIDANENPYGPPPEV 113
LT D +K K I P+EV L L D IV ID +PYGP E
Sbjct: 39 LTSDEL----AKKKKKE-KIEPYEVRLRNLRNFLESIKADYEEIVPID---DPYGPTVED 90
Query: 114 RE 115
+
Sbjct: 91 PD 92
>gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT)
family. This family belongs to pyridoxal phosphate
(PLP)-dependent aspartate aminotransferase superfamily
(fold I). The major groups in this CD correspond to
alanine-glyoxylate aminotransferase (AGAT),
serine-glyoxylate aminotransferase (SGAT), and
3-hydroxykynurenine transaminase (HKT). AGAT is a
homodimeric protein, which catalyses the transamination
of glyoxylate to glycine, and SGAT converts serine and
glyoxylate to hydroxypyruvate and glycine. HKT catalyzes
the PLP-dependent transamination of 3-hydroxykynurenine,
a potentially toxic metabolite of the kynurenine
pathway.
Length = 356
Score = 30.3 bits (69), Expect = 0.88
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 187 AAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLT 225
A GA V V + +++ E IA+A+E+ K + LT
Sbjct: 93 AERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLT 131
>gnl|CDD|224424 COG1507, COG1507, Uncharacterized conserved protein [Function
unknown].
Length = 167
Score = 29.8 bits (67), Expect = 0.94
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 14/69 (20%)
Query: 84 EVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLK----FPYIY--PDPESRRLRAA 137
+ + QLGR P ++KI PYG P V+ A +L FP +Y P L A
Sbjct: 8 KAVGRQLGRAPRGVLKIAYRC-PYGEPGVVKTA-PKLDDGTPFPTLYYLTHPV---LTKA 62
Query: 138 LAKDSGLES 146
++ LES
Sbjct: 63 ASR---LES 68
>gnl|CDD|236444 PRK09275, PRK09275, aspartate aminotransferase; Provisional.
Length = 527
Score = 30.2 bits (69), Expect = 1.0
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 25/79 (31%)
Query: 166 VLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLN-VELIADAV--------ER 216
+L GDKI P FT Y +++P + L V + AD E
Sbjct: 186 LLKAGDKIALMTPIFTPY-----------LEIPELPRYDLEVVHINADEENEWQYPDSEL 234
Query: 217 EK---P--KCIFLTSPNNP 230
EK P K +FL +P+NP
Sbjct: 235 EKLRDPSIKALFLVNPSNP 253
>gnl|CDD|218046 pfam04366, DUF500, Family of unknown function (DUF500). Proteins
in this family often also contain an SH3 domain
(pfam00018), or a FYVE zinc finger (pfam01363).
Length = 125
Score = 29.0 bits (66), Expect = 1.2
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 101 DANENPYGPPPEVREAL-GQLKFPYIYPDPESRRLRAALAK 140
DAN YG R+ L G + P P +R L ALAK
Sbjct: 89 DANRAFYGRGVTARDILAGSVPPP-----PAARPLMEALAK 124
>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal
peptide synthetases (NRPS), including Bacillus subtilis
termination module Surfactin (SrfA-C). The adenylation
(A) domain of NRPS recognizes a specific amino acid or
hydroxy acid and activates it as an (amino) acyl
adenylate by hydrolysis of ATP. The activated acyl
moiety then forms a thioester to the enzyme-bound
cofactor phosphopantetheine of a peptidyl carrier
protein domain. NRPSs are large multifunctional enzymes
which synthesize many therapeutically useful peptides in
bacteria and fungi via a template-directed, nucleic acid
independent nonribosomal mechanism. These natural
products include antibiotics, immunosuppressants, plant
and animal toxins, and enzyme inhibitors. NRPS has a
distinct modular structure in which each module is
responsible for the recognition, activation, and, in
some cases, modification of a single amino acid residue
of the final peptide product. The modules can be
subdivided into domains that catalyze specific
biochemical reactions. This family includes the
adenylation domain of the Bacillus subtilis termination
module (Surfactin domain, SrfA-C) which recognizes a
specific amino acid building block, which is then
activated and transferred to the terminal thiol of the
4'-phosphopantetheine (Ppan) arm of the downstream
peptidyl carrier protein (PCP) domain.
Length = 474
Score = 29.8 bits (68), Expect = 1.3
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 10/53 (18%)
Query: 183 YEFDAAV--------NGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSP 227
FDA+ NG +V + + + L+ + +A + + ++LT+
Sbjct: 176 LSFDASTFEIWGALLNGGRLVLIDK--ETLLDPDRLARLIAEQGVTVLWLTAA 226
>gnl|CDD|236316 PRK08636, PRK08636, aspartate aminotransferase; Provisional.
Length = 403
Score = 29.7 bits (67), Expect = 1.3
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 164 RCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRK--SDFSLNVELIADAVERE---- 217
+ + +PGD + P + ++ + G V K+P + DF L+ + + +E+
Sbjct: 113 QAITNPGDVAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRES 172
Query: 218 --KPKCIFLTSPNNP 230
KPK + + P+NP
Sbjct: 173 SPKPKYVVVNFPHNP 187
>gnl|CDD|188032 TIGR00195, exoDNase_III, exodeoxyribonuclease III. The model
brings in reverse transcriptases at scores below 50,
model also contains eukaryotic apurinic/apyrimidinic
endonucleases which group in the same family [DNA
metabolism, DNA replication, recombination, and repair].
Length = 254
Score = 29.3 bits (66), Expect = 1.7
Identities = 28/99 (28%), Positives = 36/99 (36%), Gaps = 21/99 (21%)
Query: 96 DIVKIDANENPYGPPPEVREALGQL-------KFPYIYPDPE-----SRRLRAALAKDSG 143
D+ D N N G PE RE L +L F PD R + A ++ G
Sbjct: 155 DLHIPDENRNHTGFLPEEREWLDRLLEAGLVDTFRKFNPDEGAYSWWDYRTK-ARDRNRG 213
Query: 144 LESDHILV-----GCGADELIDLIMRCVLDPGDKIVDCP 177
D+ LV D ID +R + P D CP
Sbjct: 214 WRIDYFLVSEPLKERCVDCGIDYDIRGMEKPSDH---CP 249
>gnl|CDD|176391 cd01796, DDI1_N, DNA damage inducible protein 1 ubiquitin-like
domain. DDI1_N DDI1 (DNA damage inducible protein 1)
has an amino-terminal ubiquitin-like domain, an
retroviral protease-like (RVP-like) domain, and a UBA
(ubiquitin-associated) domain. This CD represents the
amino-terminal ubiquitin-like domain of DDI1.
Length = 71
Score = 26.9 bits (60), Expect = 2.2
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 127 PDPESRRLRAALAKDSGLESDHILVGCGADELID---LIMRCVLDPGDKIV 174
PD E +A +SG+ + + EL+D L+ + GD +V
Sbjct: 18 PDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVV 68
>gnl|CDD|225516 COG2968, COG2968, Uncharacterized conserved protein [Function
unknown].
Length = 243
Score = 28.9 bits (65), Expect = 2.3
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 90 LGRKPEDIVKIDANENPYGPPPEVREA 116
LG K ++ I N + P P R A
Sbjct: 185 LGVKLGRVISISENSSNPQPMPIARAA 211
>gnl|CDD|166635 PLN02994, PLN02994, 1-aminocyclopropane-1-carboxylate synthase.
Length = 153
Score = 28.4 bits (63), Expect = 2.4
Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 12/119 (10%)
Query: 74 LKPYQPIL-PFEVLSIQLGRKP--EDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPE 130
L P+ + P ++ + L D+++ ENP+ + K ++ D
Sbjct: 33 LNPFDLLHNPQGIIQMGLAENQLCSDLIEEWIEENPHADICTAEGTIDSFKDIALFQDYH 92
Query: 131 S-RRLRAALA--------KDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTF 180
R A+A ++D I++ GA ++IM C+ DPGD + P +
Sbjct: 93 GLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIADPGDAFLVPTPYY 151
>gnl|CDD|215327 PLN02607, PLN02607, 1-aminocyclopropane-1-carboxylate synthase.
Length = 447
Score = 29.1 bits (65), Expect = 2.5
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 15/110 (13%)
Query: 133 RLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGA 192
++R A+ + D I++ GA +L+ + DPGD ++ PT FD +
Sbjct: 110 QIRGGKAR---FDPDRIVLTAGATAANELLTFILADPGDALL--VPTPYYPGFDRDLRWR 164
Query: 193 AVVK-VPRKSDFSLNVELIADAVERE---------KPKCIFLTSPNNPDG 232
VK VP D S N ++ A+E + + + +T+P+NP G
Sbjct: 165 TGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLG 214
>gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional.
Length = 657
Score = 29.1 bits (66), Expect = 2.7
Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 30/95 (31%)
Query: 110 PPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDP 169
P V L RRLR A+A G+ + VLD
Sbjct: 280 PGFVAAPLLA-------ALGPVRRLRNAVATQLGIPPE------------------VLD- 313
Query: 170 GDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFS 204
V+ P TF E AA+ G+ ++VPR + ++
Sbjct: 314 ---FVNYPTTFDSRETRAALKGSG-IEVPRLASYA 344
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.
Cobaltochelatase is responsible for the insertion of
cobalt into the corrin ring of coenzyme B12 during its
biosynthesis. Two versions have been well described.
CbiK/CbiX is a monomeric, anaerobic version which acts
early in the biosynthesis (pfam06180). CobNST is a
trimeric, ATP-dependent, aerobic version which acts late
in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A
number of genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 28.9 bits (65), Expect = 3.2
Identities = 30/124 (24%), Positives = 43/124 (34%), Gaps = 27/124 (21%)
Query: 33 PFQGNQRRVIAMSSTLPVEQQVNEGQRRL----TGDSFIRSHLRKLKPYQPILPFEVLSI 88
F+G + V+ LP V RRL TG R+ L + EVLS
Sbjct: 509 TFRGEEAEVL-----LPPTSSVELAARRLEELPTGG---RTPL----AAGLLKAAEVLSN 556
Query: 89 QLGRKPEDIVKI-----------DANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAA 137
+L R + + D E P + L ++ D ES +R
Sbjct: 557 ELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIAAKLAARGILFVVIDTESGFVRLG 616
Query: 138 LAKD 141
LA+D
Sbjct: 617 LAED 620
>gnl|CDD|218297 pfam04864, Alliinase_C, Allinase. Allicin is a thiosulphinate that
gives rise to dithiines, allyl sulphides and ajoenes,
the three groups of active compounds in Allium species.
Allicin is synthesised from sulfoxide cysteine
derivatives by alliinase (EC:4.4.1.4), whose C-S lyase
activity cleaves C(beta)-S(gamma) bonds. It is thought
that this enzyme forms part of a primitive plant defence
system.
Length = 362
Score = 28.5 bits (64), Expect = 3.2
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 33/102 (32%)
Query: 148 HILVGCGADELIDLIM------RCVLDPGDKIVDCPPTFTMYE-----FDAAV-----NG 191
+I+ G G+ +L+ + P K+V P +++Y+ FD+ N
Sbjct: 68 YIVFGTGSTQLLQAAVYALSPNATPTSPPVKVVAAAPYYSVYKEQTSYFDSKGYKWEGNA 127
Query: 192 AAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGR 233
AA V F +EL+ TSPNNPDG
Sbjct: 128 AAYVNTDNPGPF---IELV--------------TSPNNPDGT 152
>gnl|CDD|236393 PRK09147, PRK09147, succinyldiaminopimelate transaminase;
Provisional.
Length = 396
Score = 28.7 bits (65), Expect = 3.3
Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 34/188 (18%)
Query: 70 HLRKLKPYQPILPFEVLSIQL--GRKPE---DIVKIDANENPYGPPPE-VREA----LGQ 119
L +L+PY PFE L L G P + + E P P P +++A L
Sbjct: 4 RLDRLQPY----PFEKLR-ALFAGVTPPADLPPISLSIGE-PKHPTPAFIKDALAANLDG 57
Query: 120 L-KFPYIYPDPESRRLRAALA----KDSGLES----DHILVGCGADELIDLIMRCVLDPG 170
L +P P LR A+A + GL + +L G+ E + + V+D
Sbjct: 58 LASYPTTAGLPA---LREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTVIDRD 114
Query: 171 DK--IVDCP-PTFTMYEFDAAVNGAAVVKVPR--KSDFSLNVELIADAVEREKPKCIFLT 225
+V CP P + +YE A + GA + ++F+ + + + V + + +F+
Sbjct: 115 GPGPLVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWA-RTQLLFVC 173
Query: 226 SPNNPDGR 233
SP NP G
Sbjct: 174 SPGNPTGA 181
>gnl|CDD|240391 PTZ00377, PTZ00377, alanine aminotransferase; Provisional.
Length = 481
Score = 28.8 bits (65), Expect = 3.4
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 154 GADELIDLIMRCVL-DPGDKIVDCP-PTFTMYEFDAAVNGAAVVKVPRKSD--FSLNVEL 209
GA I L+++ ++ DP D ++ P P + +Y + G V + +SL+ E
Sbjct: 146 GASSGIKLLLQLLIGDPSDGVM-IPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEE 204
Query: 210 IADAVEREK-----PKCIFLTSPNNPDG 232
+ +A E+ P+ + + +P NP G
Sbjct: 205 LEEAYEQAVRNGITPRALVVINPGNPTG 232
>gnl|CDD|201596 pfam01099, Uteroglobin, Uteroglobin family. Uteroglobin is a
homodimer of two identical 70 amino acid polypeptides
linked by two disulphide bridges. The precise role of
uteroglobin has still to be elucidated.
Length = 67
Score = 26.5 bits (59), Expect = 3.5
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 106 PYGPPPEVREALGQLK 121
Y PE EA +LK
Sbjct: 25 KYNADPEAVEAKMELK 40
>gnl|CDD|239357 cd03059, GST_N_SspA, GST_N family, Stringent starvation protein A
(SspA) subfamily; SspA is a RNA polymerase
(RNAP)-associated protein required for the lytic
development of phage P1 and for stationary phase-induced
acid tolerance of E. coli. It is implicated in survival
during nutrient starvation. SspA adopts the GST fold
with an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, but it does not bind glutathione
(GSH) and lacks GST activity. SspA is highly conserved
among gram-negative bacteria. Related proteins found in
Neisseria (called RegF), Francisella and Vibrio regulate
the expression of virulence factors necessary for
pathogenesis.
Length = 73
Score = 26.5 bits (59), Expect = 3.8
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPP 111
+ SH ++ + + E++ + PED+ ++ NPYG P
Sbjct: 10 VYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAEL----NPYGTVP 50
>gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional.
Length = 410
Score = 28.5 bits (64), Expect = 3.8
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 165 CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVEREKPKCI 222
C ++PGD + P + + G V +P +++F +++ I + +EK K +
Sbjct: 125 CFINPGDVTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDI-KEKAKLL 183
Query: 223 FLTSPNNPDG 232
+L PNNP G
Sbjct: 184 YLNYPNNPTG 193
>gnl|CDD|212524 cd10000, HDAC8, Histone deacetylase 8 (HDAC8). HDAC8 is a
Zn-dependent class I histone deacetylase that catalyzes
hydrolysis of an N(6)-acetyl-lysine residue of a histone
to yield a deacetylated histone (EC 3.5.1.98). Histone
acetylation/deacetylation process is important for
mediation of transcriptional regulation of many genes.
Histone deacetylases usually act via association with
DNA binding proteins to target specific chromatin
regions. HDAC8 is found in human cytoskeleton-bound
protein fraction and insoluble cell pellets. It plays a
crucial role in intramembraneous bone formation;
germline deletion of HDAC8 is detrimental to skull bone
formation. HDAC8 is possibly associated with the smooth
muscle actin cytockeleton and may regulate the
contractive capacity of smooth muscle cells. HDAC8 is
also involved in the metabolic control of the estrogen
receptor related receptor (ERR)-alpha/peroxisome
proliferator activated receptor (PPAR) gamma coactivator
1 alpha (PGC1-alpha) transcriptional complex as well as
in the development of neuroblastoma and T-cell lymphoma.
HDAC8-selective small-molecule inhibitors could be a
therapeutic drug option for these diseases.
Length = 364
Score = 28.5 bits (64), Expect = 3.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 175 DCPPTFTMYEFDAAVNGAAV 194
DCP +Y++ AAV GA +
Sbjct: 88 DCPIFEGIYDYAAAVAGATL 107
>gnl|CDD|223082 COG0003, ArsA, Predicted ATPase involved in chromosome partitioning
[Cell division and chromosome partitioning].
Length = 322
Score = 28.1 bits (63), Expect = 5.1
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 25/105 (23%)
Query: 85 VLSIQLGRKPE------DIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAAL 138
V ++LG P D +++D + + E ++K D +R LR
Sbjct: 47 VFDLELGHDPRKVGPNLDALELDPEK-------ALEEYWDEVK------DYLARLLRTRG 93
Query: 139 AKDSGLESDHILVGCGADEL--IDLIMRCVLDPG-DKIV-DCPPT 179
G+ +D + G DE + I+ + D IV D PT
Sbjct: 94 --LGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAPT 136
>gnl|CDD|222025 pfam13286, HD_assoc, Phosphohydrolase-associated domain. This
domain is found on bacterial and archaeal
metal-dependent phosphohydrolases.
Length = 91
Score = 26.3 bits (59), Expect = 5.4
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 110 PPEVREALGQLK---FPYIYPDPESRRLRA 136
PE+ L +LK F Y+Y PE +R
Sbjct: 4 SPEMAAELAELKKFLFEYVYRHPEVQREEY 33
>gnl|CDD|185177 PRK15274, PRK15274, putative periplasmic fimbrial chaperone
protein SteC; Provisional.
Length = 257
Score = 27.8 bits (61), Expect = 5.9
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 14 LLKSNFSSHPFVVPNRTVCPFQGNQRRVIAM----SSTLPVEQQVNEGQRRLTGDSFIRS 69
LL + SH +VP+RT F GN+ + ++TLP Q + D+
Sbjct: 17 LLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDT---R 73
Query: 70 HLRKLKPYQPILP 82
+ L P Q I P
Sbjct: 74 YFTALPPLQRIEP 86
>gnl|CDD|99738 cd00614, CGS_like, CGS_like: Cystathionine gamma-synthase is a PLP
dependent enzyme and catalyzes the committed step of
methionine biosynthesis. This pathway is unique to
microorganisms and plants, rendering the enzyme an
attractive target for the development of antimicrobials
and herbicides. This subgroup also includes
cystathionine gamma-lyases (CGL), O-acetylhomoserine
sulfhydrylases and O-acetylhomoserine thiol lyases.
CGL's are very similar to CGS's. Members of this group
are widely distributed among all three forms of life.
Length = 369
Score = 27.6 bits (62), Expect = 6.6
Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 19/130 (14%)
Query: 110 PPEVREALGQLKFPYIYP---DPESRRLRAALAKDSGLE-SDHILV---GCGADELIDLI 162
P E + + YIY +P L LA LE + L G A I +
Sbjct: 18 PAEAADLFALREGGYIYSRIGNPTVDALEKKLAA---LEGGEAALAFSSGMAA---ISTV 71
Query: 163 MRCVLDPGDKIVDCPPTF--TMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPK 220
+ +L GD +V Y + ++V D + E + A+ + + K
Sbjct: 72 LLALLKAGDHVV-ASDDLYGGTYRLFERLLPKLGIEV-TFVDPD-DPEALEAAI-KPETK 127
Query: 221 CIFLTSPNNP 230
+++ SP NP
Sbjct: 128 LVYVESPTNP 137
>gnl|CDD|235031 PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase;
Provisional.
Length = 381
Score = 27.5 bits (62), Expect = 8.4
Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 35/98 (35%)
Query: 68 RSHLRKLKP----YQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFP 123
R LRKL +P+L + G +++K A AL
Sbjct: 294 RQPLRKLGANDRLIKPLL----GLKEYGLPHSNLLKGIAA------------ALH----- 332
Query: 124 YIYP-DPESRRLR---------AALAKDSGLESDHILV 151
+ DP++ L+ AALA+ +GL++D LV
Sbjct: 333 FDDENDPQAVELQALIAEKGLEAALAEITGLDADSELV 370
>gnl|CDD|197320 cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III
(ExoIII) and Neisseria meningitides NExo-like subfamily
of the ExoIII family purinic/apyrimidinic (AP)
endonucleases. This subfamily includes Escherichia coli
ExoIII, Neisseria meningitides NExo,and related
proteins. These are ExoIII family AP endonucleases and
they belong to the large EEP
(exonuclease/endonuclease/phosphatase) superfamily that
contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds. AP endonucleases participate in the DNA base
excision repair (BER) pathway. AP sites are one of the
most common lesions in cellular DNA. During BER, the
damaged DNA is first recognized by DNA glycosylase. AP
endonucleases then catalyze the hydrolytic cleavage of
the phosphodiester bond 5' to the AP site, and this is
followed by the coordinated actions of DNA polymerase,
deoxyribose phosphatase, and DNA ligase. If left
unrepaired, AP sites block DNA replication, and have
both mutagenic and cytotoxic effects. AP endonucleases
can carry out a variety of excision and incision
reactions on DNA, including 3'-5' exonuclease,
3'-deoxyribose phosphodiesterase, 3'-phosphatase, and
occasionally, nonspecific DNase activities. Different AP
endonuclease enzymes catalyze the different reactions
with different efficiencies. Many organisms have two AP
endonucleases, usually one is the dominant AP
endonuclease, the other has weak AP endonuclease
activity. For example, Neisseria meningitides Nape and
NExo, and exonuclease III (ExoIII) and endonuclease IV
(EndoIV) in Escherichia coli. NExo and ExoIII are found
in this subfamily. NExo is the non-dominant AP
endonuclease. It exhibits strong 3'-5' exonuclease and
3'-deoxyribose phosphodiesterase activities. Escherichia
coli ExoIII is an active AP endonuclease, and in
addition, it exhibits double strand (ds)-specific 3'-5'
exonuclease, exonucleolytic RNase H,
3'-phosphomonoesterase and 3'-phosphodiesterase
activities, all catalyzed by a single active site. Class
II AP endonucleases have been classified into two
families, designated ExoIII and EndoIV, based on their
homology to the Escherichia coli enzymes ExoIII and
endonuclease IV (EndoIV). This subfamily belongs to the
ExoIII family; the EndoIV family belongs to a different
superfamily.
Length = 254
Score = 27.1 bits (61), Expect = 8.8
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 16/70 (22%)
Query: 111 PEVREALGQLK-------FPYIYPDPE-----SRRLRAALAKDSGLESDHILVGCGADEL 158
PE REAL L F ++PD + R A ++ GL DHIL + L
Sbjct: 170 PEEREALRALLDLGFVDAFRALHPDEKLFTWWDYR-AGAFERNRGLRIDHILA---SPAL 225
Query: 159 IDLIMRCVLD 168
D + +D
Sbjct: 226 ADRLKDVGID 235
>gnl|CDD|216267 pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent
enzyme. This family includes enzymes involved in
cysteine and methionine metabolism. The following are
members: Cystathionine gamma-lyase, Cystathionine
gamma-synthase, Cystathionine beta-lyase, Methionine
gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine
sulfhydrylase All of these members participate is
slightly different reactions. All these enzymes use PLP
(pyridoxal-5'-phosphate) as a cofactor.
Length = 382
Score = 27.2 bits (61), Expect = 9.2
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 16/79 (20%)
Query: 159 IDLIMRCVLDPGDKIV---DC-PPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAV 214
I + +L GD +V D T+ ++E G V V D S DA+
Sbjct: 80 IFAALLALLKAGDHVVATDDLYGGTYRLFEKVLPRFGIEVTFV----DPS-----DLDAL 130
Query: 215 E---REKPKCIFLTSPNNP 230
E + K +FL +P NP
Sbjct: 131 EAAIKPNTKAVFLETPTNP 149
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.415
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,078,565
Number of extensions: 1269914
Number of successful extensions: 1397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1302
Number of HSP's successfully gapped: 116
Length of query: 249
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 155
Effective length of database: 6,768,326
Effective search space: 1049090530
Effective search space used: 1049090530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (25.9 bits)