RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 025730
(249 letters)
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in
CLIP11262, structural genomics, PSI-2; 2.31A {Listeria
innocua}
Length = 363
Score = 212 bits (543), Expect = 7e-68
Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 4/167 (2%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYI 125
+ L L Y+P E + +LG I K+ +NENP G +V I
Sbjct: 6 WKKSLAGLSSYKPGKREEEVMAELGLT--KITKLSSNENPLGTSKKVAAIQANSSVETEI 63
Query: 126 YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF 185
YPD + LR +A LE + ++ G DELI+L+ R +LD V PTF Y
Sbjct: 64 YPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVLLDTTTNTVMATPTFVQYRQ 123
Query: 186 DAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
+A + GA V ++P D ++E + +A+ EK +++ +PNNP G
Sbjct: 124 NALIEGAEVREIPLLQDGEHDLEGMLNAI-DEKTTIVWICNPNNPTG 169
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural
genomics, joint center for structural genomics; HET: LLP
MSE; 2.01A {Campylobacter jejuni subsp}
Length = 365
Score = 207 bits (530), Expect = 6e-66
Identities = 49/167 (29%), Positives = 87/167 (52%), Gaps = 4/167 (2%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYI 125
L L Y+P EV++ + G K +++K+ +NENP+G PP+ E L Q ++
Sbjct: 4 FNEFLNNLSNYEPGKDIEVIAKEYGVK--EVIKLASNENPFGTPPKAIECLRQNANKAHL 61
Query: 126 YPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEF 185
YPD L++ LA+ +++++I++G G+D++I+ + L+ + + TF MYE
Sbjct: 62 YPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKLNSKNAFLQAGVTFAMYEI 121
Query: 186 DAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
A GA K + + + + +++ K IFL PNNP G
Sbjct: 122 YAKQCGAKCYKTQSITHNLDEFKKLYETH-KDEIKLIFLCLPNNPLG 167
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur
genomics, joint center for structural genomics, JCSG;
HET: MSE; 2.05A {Ralstonia eutropha JMP134}
Length = 367
Score = 204 bits (521), Expect = 1e-64
Identities = 53/173 (30%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 64 DSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQL--K 121
+ IR +R + Y +VK+DA ENPY PP +R L +
Sbjct: 11 ERIIRDDVRAMGAYHV------------PDSHGLVKLDAMENPYRLPPALRSELAARLGE 58
Query: 122 FPY-IYPDPESRRLRAALAKDSGLESD-HILVGCGADELIDLIMRCVLDPGDKIVDCPPT 179
YP P S LRA L + + + +L+G G+DE+I ++ PG K++ P
Sbjct: 59 VALNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAAARPGAKVMAPVPG 118
Query: 180 FTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
F MY A G V VP ++DF+L+ + A+ +P ++L PNNP G
Sbjct: 119 FVMYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTG 171
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine
biosynthesis, pyridoxal PH montreal-kingston bacterial
structural genomics initiative; HET: PMP; 1.50A
{Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A*
1gex_A* 1gey_A* 1iji_A*
Length = 356
Score = 199 bits (508), Expect = 8e-63
Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 21/172 (12%)
Query: 64 DSFIRSHLRKLKPYQPILPFEVLSIQLGRKP--EDIVKIDANENPYGPPPEVREALGQLK 121
R ++R L PYQ R+ V ++ANE P ++ +
Sbjct: 7 TDLARENVRNLTPYQS-----------ARRLGGNGDVWLNANEYPTAVEFQLTQQTLN-- 53
Query: 122 FPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPG-DKIVDCPPTF 180
YP+ + + + A+ +G++ + +LV GADE I+L++R +PG D I+ CPPT+
Sbjct: 54 ---RYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDAILYCPPTY 110
Query: 181 TMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
MY A G VP ++ L+++ I+D + + K +++ SPNNP G
Sbjct: 111 GMYSVSAETIGVECRTVPTLDNWQLDLQGISDKL--DGVKVVYVCSPNNPTG 160
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid
biosynthesis, histidine biosynthesis, pyridoxal
phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum}
PDB: 3cq6_A* 3cq4_A
Length = 369
Score = 192 bits (490), Expect = 6e-60
Identities = 38/180 (21%), Positives = 77/180 (42%), Gaps = 23/180 (12%)
Query: 64 DSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ---- 119
D +R LR Y + ++++ NENPY P + L
Sbjct: 11 DLPLREELRGEHAYGA------------PQLNVDIRLNTNENPYPPSEALVADLVATVDK 58
Query: 120 -LKFPYIYPDPESRRLRAALAK------DSGLESDHILVGCGADELIDLIMRCVLDPGDK 172
YP+ ++ LR LA + D++ G++E++ +++ PG
Sbjct: 59 IATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAFGGPGRT 118
Query: 173 IVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
+ P+++M+ A + V R +DF +++++ + + ++P +F+T+PNNP G
Sbjct: 119 ALGFQPSYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTG 178
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI,
MCSG, protein structure initiative; 2.00A {Clostridium
acetobutylicum}
Length = 361
Score = 182 bits (464), Expect = 4e-56
Identities = 37/145 (25%), Positives = 69/145 (47%), Gaps = 7/145 (4%)
Query: 91 GRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDHI 149
K +++ +N NP G P + + +K +YPD RRL ++ L+ I
Sbjct: 22 VFKGRELLDYSSNINPLGIPKSFLNNIDEGIKNLGVYPDVNYRRLNKSIENYLKLKDIGI 81
Query: 150 LVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVEL 209
++G GA E+I+L + +KI+ P++ YE +A +G +VV + ++ E
Sbjct: 82 VLGNGASEIIELSISLF----EKILIIVPSYAEYEINAKKHGVSVVFSYLDENMCIDYED 137
Query: 210 IADAVEREKPKCIFLTSPNNPDGRF 234
I + + + + +PNNP+G
Sbjct: 138 IISKI--DDVDSVIIGNPNNPNGGL 160
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent
decarboxylase cobalamin, lyase; 1.46A {Salmonella
enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Length = 364
Score = 179 bits (456), Expect = 8e-55
Identities = 44/164 (26%), Positives = 67/164 (40%), Gaps = 5/164 (3%)
Query: 73 KLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREAL-GQLKFPYIYPDPES 131
L + LG P+ ++ AN NP G P V+ AL L YPD +
Sbjct: 2 ALFNTAHGGNIREPATVLGISPDQLLDFSANINPLGMPVSVKRALIDNLDCIERYPDADY 61
Query: 132 RRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNG 191
L ALA+ + + IL G G E I + + + + P F Y A +G
Sbjct: 62 FHLHQALARHHQVPASWILAGNGETESIFTVASGL--KPRRAMIVTPGFAEYGRALAQSG 119
Query: 192 AAVVKVP-RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234
+ + R++D + I +A+ C+FL +PNNP G
Sbjct: 120 CEIRRWSLREADGWQLTDAILEALT-PDLDCLFLCTPNNPTGLL 162
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate
aminotrans structural genomics, protein structure
initiative; 1.61A {Geobacter metallireducens gs-15}
Length = 360
Score = 178 bits (454), Expect = 1e-54
Identities = 51/176 (28%), Positives = 82/176 (46%), Gaps = 24/176 (13%)
Query: 67 IRSHLRKLKPYQPILPFEVLSIQLGRKPED---IVKIDANENPYGPPPEVREALGQLKFP 123
+R ++ +K Y P G +P D +K++ NENPY P PEV +A+ + P
Sbjct: 6 LRQNIASMKGYIP-----------GYQPPDIASWIKLNTNENPYPPSPEVVKAILEELGP 54
Query: 124 Y-----IYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPP 178
IYP S++LR + G + I++ G+DE+++ ++R G++I P
Sbjct: 55 DGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAFAAEGEEIGYVHP 114
Query: 179 TFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234
+++ Y A V GA V DF + R + K FLT+PN P G
Sbjct: 115 SYSYYGTLAEVQGARVRTFGLTGDFRIAGFPE-----RYEGKVFFLTTPNAPLGPS 165
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent
transferase-like, structural genomics, joint C
structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia
pseudomallei}
Length = 337
Score = 172 bits (439), Expect = 1e-52
Identities = 36/155 (23%), Positives = 57/155 (36%), Gaps = 6/155 (3%)
Query: 81 LPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALA 139
+ R V + NENP P V+ A+ YP R+ LA
Sbjct: 2 MSVGEAMDTEVRAAAQAVCLAFNENPEAVEPRVQAAIAAAAARINRYPFDAEPRVMRKLA 61
Query: 140 KDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR 199
+ D++++ G DE D I + V P F Y AV+G ++
Sbjct: 62 EHFSCPEDNLMLVRGIDECFDRISAEF--SSMRFVTAWPGFDGYRARIAVSGLRHFEIGL 119
Query: 200 KSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234
D L+ +A + C+ L +P+NP G+
Sbjct: 120 TDDLLLDPNDLAQV---SRDDCVVLANPSNPTGQA 151
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis,
pyridoxal phosphate, complete proteome; HET: PMP HSA;
2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A
1h1c_A* 1uu2_A* 2f8j_A*
Length = 335
Score = 172 bits (438), Expect = 2e-52
Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 29/174 (16%)
Query: 65 SFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPY 124
+ + ++ PY+ + D + NENP+ P ++ + + +
Sbjct: 2 NPLDLIAKRAYPYET-------------EKRDKTYLALNENPFPFPEDLVDEVFRRLNSD 48
Query: 125 ---IYPDPESRRLRAALAK---DSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPP 178
IY D L + L +++ VG GADE+I ++M D+ V PP
Sbjct: 49 ALRIYYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLM----FDRSVFFPP 104
Query: 179 TFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
T++ Y A GA ++VP D + V + +F+ +PNNP G
Sbjct: 105 TYSCYRIFAKAVGAKFLEVPLTKDLRI------PEVNVGEGDVVFIPNPNNPTG 152
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, ,
structural genomics, PSI-2, protein structure
initiative; 2.50A {Porphyromonas gingivalis}
Length = 350
Score = 169 bits (431), Expect = 3e-51
Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 11/146 (7%)
Query: 90 LGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAALAKDSGLESDH 148
+ +IV G + + L + L YP+P++ LR LAK + ++++
Sbjct: 10 ITPLSSEIVNFSTTVWTDGDKDHLEKHLVENLNCIRHYPEPDAGTLRQMLAKRNSVDNNA 69
Query: 149 ILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVE 208
ILV G I + G + + P+F YE + V P D
Sbjct: 70 ILVTNGPTAAFYQIAQAF--RGSRSLIAIPSFAEYEDACRMYEHEVCFYPSNEDI----- 122
Query: 209 LIADAVEREKPKCIFLTSPNNPDGRF 234
+ +L +PNNPDGR
Sbjct: 123 ---GEADFSNMDFCWLCNPNNPDGRL 145
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint
center for structural genomics, JCSG; HET: MSE PLP CIT;
1.80A {Erwinia carotovora atroseptica}
Length = 354
Score = 166 bits (422), Expect = 6e-50
Identities = 38/158 (24%), Positives = 64/158 (40%), Gaps = 4/158 (2%)
Query: 79 PILPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQ-LKFPYIYPDPESRRLRAA 137
P ++ ++I+ NENP G P+ + A + Y E L
Sbjct: 2 ETQPESAAFTAPS--TDNPIRINFNENPLGMSPKAQAAARDAVVKANRYAKNEILMLGNK 59
Query: 138 LAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKV 197
LA +E+ IL+ G+ E I + ++V T+ E A + G V KV
Sbjct: 60 LAAHHQVEAPSILLTAGSSEGIRAAIEAYASLEAQLVIPELTYGDGEHFAKIAGMKVTKV 119
Query: 198 PRKSDFSLNVELIADAV-EREKPKCIFLTSPNNPDGRF 234
+++ ++E + AV P ++L +PNNP G
Sbjct: 120 KMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTI 157
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis,
pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP
PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Length = 391
Score = 95.8 bits (238), Expect = 3e-23
Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 20/117 (17%)
Query: 126 YPDPESRRLRAALAK------DSGLESDHILVGCGADELIDLIMRCVLDPGD----KIVD 175
L A+ ++ E +I+VG G+ +L + + +V
Sbjct: 65 LCWFLEPELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALSSLARSQPVSVVA 124
Query: 176 CPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
P ++ Y + + + K E A +++ P +TSPNNPDG
Sbjct: 125 AAPFYSTYVEETTYVRSGMYK----------WEGDAWGFDKKGPYIELVTSPNNPDG 171
>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
structural genomics, joint center structural genomics,
JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
3p6k_A*
Length = 375
Score = 83.4 bits (207), Expect = 8e-19
Identities = 26/132 (19%), Positives = 54/132 (40%), Gaps = 13/132 (9%)
Query: 110 PPEVREAL------GQLKFPYIYPDPESRRLRAALA-KDSGLESDHILVGCGADELIDLI 162
E +L + +I P + +++ +G++ + IL GA L+
Sbjct: 41 SGTNPEDFYKKLQGTKLNYGWIEGSPA---FKKSVSQLYTGVKPEQILQTNGATGANLLV 97
Query: 163 MRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVEREKPK 220
+ +++PGD ++ PT+ GA V ++ + ++E + + R K
Sbjct: 98 LYSLIEPGDHVISLYPTYQQLYDIPKSLGAEVDLWQIEEENGWLPDLEKLRQLI-RPTTK 156
Query: 221 CIFLTSPNNPDG 232
I + + NNP G
Sbjct: 157 MICINNANNPTG 168
>1v2d_A Glutamine aminotransferase; PLP, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1
PDB: 1v2e_A* 1v2f_A*
Length = 381
Score = 81.1 bits (201), Expect = 6e-18
Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 107 YGPPPEVREALGQ-LKFPYIY-PDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164
PPP + EA+ + L Y P LR ALA++ +E + ++V GA E + ++++
Sbjct: 37 NPPPPFLLEAVRRALGRQDQYAPPAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQ 96
Query: 165 CVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP---RKSDFSLNVELIADAVEREKPKC 221
++ PGD++V P F +Y DA + GA V F L++ + A+ + +
Sbjct: 97 SLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKAL-TPRTRA 155
Query: 222 IFLTSPNNPDG 232
+ L +P NP G
Sbjct: 156 LLLNTPMNPTG 166
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2;
protein-cofactor-inhibitor complex, V6-dependent enzyme,
LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP:
c.67.1.4 PDB: 1iax_A*
Length = 428
Score = 76.6 bits (189), Expect = 3e-16
Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 17/137 (12%)
Query: 114 REALGQLKFPYIYPDPE-SRRLRAALAK--------DSGLESDHILVGCGADELIDLIMR 164
E + K + D R A+AK + + +++ GA + I+
Sbjct: 67 SEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIF 126
Query: 165 CVLDPGDKIVDCPPTFTMYEFDAAV-NGAAVVKVPRKS--DFSLNVELIADAVERE---- 217
C+ DPGD + P + + D G ++ + +S +F + + + +A E
Sbjct: 127 CLADPGDAFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSN 186
Query: 218 -KPKCIFLTSPNNPDGR 233
K K + LT+P+NP G
Sbjct: 187 IKVKGLILTNPSNPLGT 203
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for
structural genomics, JCSG; HET: MSE PLP; 2.10A
{Eubacterium rectale}
Length = 398
Score = 74.9 bits (185), Expect = 7e-16
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Query: 134 LRAALA----KDSGLE--SDHILVGCGADELIDLIMRCVLDPG-DKIVDCPPTFTMYEFD 186
RAA+A G +D++ + GA + + R + D+ + P F Y+
Sbjct: 81 TRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALTSDAYDEFITIAPYFPEYKVF 140
Query: 187 AAVNGAAVVKVP-RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
GA +V+VP F ++ + + + + + + + SPNNP G
Sbjct: 141 VNAAGARLVEVPADTEHFQIDFDALEERIN-AHTRGVIINSPNNPSG 186
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP;
2.35A {Escherichia coli} SCOP: c.67.1.1
Length = 386
Score = 74.5 bits (184), Expect = 1e-15
Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 12/135 (8%)
Query: 109 PPPEVREALGQ--LKFPYIY-PDPESRRLRAALA----KDSGLESD---HILVGCGADEL 158
P ++E L + Y P + LR A+A + G + D I V GA E
Sbjct: 44 GPRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEA 103
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP-RKSDFSLNVELIADAVERE 217
+ + ++ GD+++ P++ Y A++G V ++ + F ++ + A + E
Sbjct: 104 LYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALL-SE 162
Query: 218 KPKCIFLTSPNNPDG 232
+ + + L +P+NP
Sbjct: 163 RTRLVILNTPHNPSA 177
>3nra_A Aspartate aminotransferase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Length = 407
Score = 74.2 bits (183), Expect = 1e-15
Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 14/112 (12%)
Query: 134 LRAALA----KDSGLE---SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFD 186
+R LA +G D +++ G + L + + GDK+ P +
Sbjct: 83 IRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAATVARGDKVAIVQPDYFANRKL 142
Query: 187 AAVNGAAVVKVPRKS------DFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
+V V L++ + +A + + ++PNNP G
Sbjct: 143 VEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAF-KAGARVFLFSNPNNPAG 193
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening,
ethylene biosynthesis, lyase, pyridoxal 5'-P binding;
HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A*
1m7y_A* 1ynu_A* 1b8g_A*
Length = 435
Score = 74.3 bits (183), Expect = 1e-15
Identities = 22/125 (17%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 126 YPDPE-SRRLRAALAK------DSGL--ESDHILVGCGADELIDLIMRCVLDPGDKIVDC 176
+ D + A+ + + + +H+++ GA + + C+ DPG+ ++
Sbjct: 82 FQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCLADPGEAVLIP 141
Query: 177 PPTFTMYEFDAAV-NGAAVVKVPRKS--DFSLNVELIADAVERE-----KPKCIFLTSPN 228
P + ++ D G +V + S F + + +A + + K + +T+P+
Sbjct: 142 TPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPS 201
Query: 229 NPDGR 233
NP G
Sbjct: 202 NPLGT 206
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature
dependence O substrate recognition; HET: PLP; 1.80A
{Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A*
1dju_A*
Length = 389
Score = 72.9 bits (180), Expect = 3e-15
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 26/141 (18%)
Query: 100 IDANENPYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE---SDHILVGC 153
+D YGP E+REA+ + K K +G+E I+V
Sbjct: 52 LDKGLTHYGPNIGLLELREAIAE-KL----------------KKQNGIEADPKTEIMVLL 94
Query: 154 GADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIA 211
GA++ + + L G++++ P F Y + G V+VP + +F LNV+ +
Sbjct: 95 GANQAFLMGLSAFLKDGEEVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELK 154
Query: 212 DAVEREKPKCIFLTSPNNPDG 232
V +K + + + SP NP G
Sbjct: 155 KYVT-DKTRALIINSPCNPTG 174
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding
enzyme, lysine biosynthesis, aminotransferase, S
genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Length = 411
Score = 73.0 bits (180), Expect = 4e-15
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 14/139 (10%)
Query: 107 YGPPPEVREALGQ--LKFPYIY-PDPESRRLRAALA----KDSGLESD---HILVGCGAD 156
PP++ +A Y P P S LR A+A + G++ D +LV GA
Sbjct: 37 EDGPPKMLQAAQDAIAGGVNQYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGAT 96
Query: 157 ELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP---RKSDFSLNVELIADA 213
E I + +++PG +++ P + Y A+ GA V VP F+L+ + + A
Sbjct: 97 EAIAAAVLGLVEPGSEVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRA 156
Query: 214 VEREKPKCIFLTSPNNPDG 232
V + + + + SP+NP G
Sbjct: 157 V-TPRTRALIINSPHNPTG 174
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate
aminotransferase, structural genomics, joint center for
structural genomics; HET: MSE LLP PE4; 1.75A
{Porphyromonas gingivalis}
Length = 437
Score = 72.8 bits (179), Expect = 5e-15
Identities = 18/156 (11%), Positives = 43/156 (27%), Gaps = 35/156 (22%)
Query: 94 PEDIVK-----IDANENPYGPP----PEVREALGQLKFPYIYPDPESRRLRAALAKDSGL 144
P+ ++ + P PE+++ SR + +
Sbjct: 59 PQIGIETEIQKLREGVASIYPNLDGLPELKQEA-------------SRFAK----LFVNI 101
Query: 145 E--SDHILVGCGADELIDLIM----RCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP 198
+ + + G+ + + R + + P F + + + G
Sbjct: 102 DIPARACVPTVGSMQGCFVSFLVANRTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFD 161
Query: 199 --RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
L +L + + I ++PNNP
Sbjct: 162 LFEYRGEKLREKLESYLQT-GQFCSIIYSNPNNPTW 196
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural
genomics, PSI-2, protein structure initiative; HET: MSE;
1.90A {Silicibacter pomeroyi dss-3}
Length = 391
Score = 71.0 bits (175), Expect = 2e-14
Identities = 31/176 (17%), Positives = 56/176 (31%), Gaps = 34/176 (19%)
Query: 80 ILPFEVLSI-----QLGRKPEDIVKIDANENPYGPPPEVREAL------GQLKFPYIYPD 128
+ PF V+ + + I+ ++ + G P EAL L Y
Sbjct: 11 VDPFIVMDVMEAARRAEEAGRRIIHMEVGQPGTGAPRGAVEALAKSLETDALG----YTV 66
Query: 129 ----PESRRLRAALA----KDSGLE--SDHILVGCGADELIDLIMRCVLDPGDKIVDCPP 178
P LR +A + G++ +++ G+ L + D GD++ P
Sbjct: 67 ALGLPA---LRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTALFDSGDRVGIGAP 123
Query: 179 TFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
+ Y G V +P ++ + + SP NP G
Sbjct: 124 GYPSYRQILRALGLVPVDLPTAPENRLQPVPA----DFAGLDLAGLMVASPANPTG 175
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic
acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP;
HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB:
1yiy_A* 2r5c_A* 2r5e_A*
Length = 429
Score = 70.4 bits (173), Expect = 3e-14
Identities = 33/149 (22%), Positives = 52/149 (34%), Gaps = 24/149 (16%)
Query: 107 YGPPPEVREALGQ-----LKFPYIY-PDPESRRLRAALA----KDSGLESD---HILVGC 153
Y P AL Y RL AL+ + + +LV
Sbjct: 49 YHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTV 108
Query: 154 GADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP----------RKSDF 203
GA E + ++ +D GD+++ P F YE G +P +D+
Sbjct: 109 GAYEALYATIQGHVDEGDEVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADW 168
Query: 204 SLNVELIADAVEREKPKCIFLTSPNNPDG 232
L+ + EK K I + +P+NP G
Sbjct: 169 VLDNNELEALF-NEKTKMIIINTPHNPLG 196
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent
enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A
{Thermus thermophilus}
Length = 376
Score = 70.3 bits (173), Expect = 3e-14
Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 12/135 (8%)
Query: 109 PPPEVREALGQ-LKFP--YIYPDPE-SRRLRAALA----KDSGLESD---HILVGCGADE 157
PP +AL + L P Y Y + A G+ D L G+ E
Sbjct: 39 PPEAPLKALAEALNDPTTYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQE 98
Query: 158 LIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVERE 217
+ ++ + +P D ++ + Y A V +P + D +++ + + V
Sbjct: 99 GLAHLLLALTEPEDLLLLPEVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGV-WR 157
Query: 218 KPKCIFLTSPNNPDG 232
+ K + L PNNP G
Sbjct: 158 EAKVLLLNYPNNPTG 172
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase,
kynurenine aminotransferase, MJ0684, cytoplasm; HET:
LLP; 2.20A {Methanococcus jannaschii}
Length = 370
Score = 69.9 bits (172), Expect = 4e-14
Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 34/149 (22%)
Query: 94 PEDIVK-----IDANENPYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE 145
P+ IV + + Y E+RE + S + +
Sbjct: 44 PKPIVDEGIKSLKEGKTHYTDSRGILELREKI-------------SELYK----DKYKAD 86
Query: 146 --SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDF 203
D+I++ G+ + + ++D GD+++ P + Y+ GA V
Sbjct: 87 IIPDNIIITGGSSLGLFFALSSIIDDGDEVLIQNPCYPCYKNFIRFLGAKPVFCD----- 141
Query: 204 SLNVELIADAVEREKPKCIFLTSPNNPDG 232
VE + +A+ +K K I + SP+NP G
Sbjct: 142 -FTVESLEEAL-SDKTKAIIINSPSNPLG 168
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A
{Staphylococcus aureus}
Length = 404
Score = 69.5 bits (171), Expect = 5e-14
Identities = 37/204 (18%), Positives = 71/204 (34%), Gaps = 24/204 (11%)
Query: 44 MSSTLPVEQQVNEGQRRLTGDSFIRSHLRKLKPYQPILPF-EVLSIQLGRKPEDIVKID- 101
M S+ + R G I + L + F + + ++ P + I+
Sbjct: 1 MGSSHHHHHHSSGLVPR--GSHMISNKLANIPDS----YFGKTMGRKIEHGPLPL--INM 52
Query: 102 ANENP-YGPPPEVREALGQ-LKFP--YIYPDPE-SRRLRAALA----KDSGLESD---HI 149
A P P + + + L P Y + A+ + + D +
Sbjct: 53 AVGIPDGPTPQGIIDHFQKALTIPENQKYGAFHGKEAFKQAIVDFYQRQYNVTLDKEDEV 112
Query: 150 LVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP-RKSDFSLNVE 208
+ G + + CV++PGD ++ P +T Y + V + + +
Sbjct: 113 CILYGTKNGLVAVPTCVINPGDYVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWS 172
Query: 209 LIADAVEREKPKCIFLTSPNNPDG 232
+ + +K K I+LT PNNP G
Sbjct: 173 KVDSQI-IDKTKLIYLTYPNNPTG 195
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC
BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB:
2hor_A* 1lk9_A*
Length = 427
Score = 69.2 bits (169), Expect = 8e-14
Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 18/118 (15%)
Query: 126 YPDPESRRLRAALAKDSGL---ESDHILVGCGADELIDLIMR--------CVLDPGDKIV 174
+ E + L + G + +I+ G G +LI ++ P K+V
Sbjct: 100 FISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVV 159
Query: 175 DCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
P + ++ ++ N + + +TSPNNP+G
Sbjct: 160 AHAPFYPVFREQTKYFDKKGYV------WAGNAANYVNVS-NPEQYIEMVTSPNNPEG 210
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: LLP; 1.50A {Homo sapiens}
PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Length = 422
Score = 68.5 bits (168), Expect = 1e-13
Identities = 33/150 (22%), Positives = 55/150 (36%), Gaps = 25/150 (16%)
Query: 107 YGPPPEVREALGQ-LKFPYIY----PDPESRRLRAALA----KDSGLESD---HILVGCG 154
+ PP EA + ++ L LA + G E D ++LV G
Sbjct: 40 FPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVTVG 99
Query: 155 ADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP------------RKSD 202
+ + ++D GD+++ P F YE + G V V S+
Sbjct: 100 GYGALFTAFQALVDEGDEVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSN 159
Query: 203 FSLNVELIADAVEREKPKCIFLTSPNNPDG 232
+ L+ +A + K + L +PNNP G
Sbjct: 160 WQLDPMELAGKF-TSRTKALVLNTPNNPLG 188
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP
dependent protein, aminotransferase, pyridoxal
phosphate, transferase; HET: GLN PMP; 2.26A {Mus
musculus} PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Length = 410
Score = 68.5 bits (168), Expect = 1e-13
Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 23/148 (15%)
Query: 107 YGPPPEVREALGQ---LKFPYIYPDPESR-RLRAALA----KDSGLESD---HILVGCGA 155
PP V+E L + + Y L AL+ K + D ILV GA
Sbjct: 35 ISPPSYVKEELSKAAFIDNMNQYTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGA 94
Query: 156 DELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP-----------RKSDFS 204
+ ++ ++DPGD+++ P + YE + GA V +P SD++
Sbjct: 95 YGSLFNSIQGLVDPGDEVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWT 154
Query: 205 LNVELIADAVEREKPKCIFLTSPNNPDG 232
+ + K K I L +P+NP G
Sbjct: 155 FDPRELESKF-SSKTKAIILNTPHNPLG 181
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI
structure initiative, joint center for structural
genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 409
Score = 68.4 bits (168), Expect = 1e-13
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 18/136 (13%)
Query: 110 PPEVREALGQLKFPYI-YPD----PESRRLRAALA----KDSGLE--SDHILVGCGADEL 158
P E + + K + Y E LR A A + ++ +++LV G E
Sbjct: 58 PEVFFERIYENKPEVVYYSHSAGIWE---LREAFASYYKRRQRVDVKPENVLVTNGGSEA 114
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVER 216
I + +PGD+I+ P + Y A + G ++ V + F++ + + +
Sbjct: 115 ILFSFAVIANPGDEILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFIN- 172
Query: 217 EKPKCIFLTSPNNPDG 232
E+ K I L++P NP G
Sbjct: 173 ERTKGIVLSNPCNPTG 188
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics,
structural genomics consortium, disease mutation,
phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens}
PDB: 3pdx_A*
Length = 427
Score = 68.4 bits (168), Expect = 2e-13
Identities = 40/210 (19%), Positives = 81/210 (38%), Gaps = 34/210 (16%)
Query: 45 SSTLPVEQQVNEGQRRLTGDSFIRSHLRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANE 104
SS + + + Q S S + K PI + ++ + +
Sbjct: 8 SSGVDLGTENLYFQSMW---SVRPSDMAKKTFN-PIRAIVDNMKVKPNPNKTMISLSIGD 63
Query: 105 -NPYG---PPPEVREAL------GQLKFPYIYPD----PESRRLRAALA-----KDSGLE 145
+G PEV +A+ G+ Y R +A ++ LE
Sbjct: 64 PTVFGNLPTDPEVTQAMKDALDSGKYNG---YAPSIGFLS---SREEIASYYHCPEAPLE 117
Query: 146 SDHILVGCGADELIDLIMRCVLDPGDKIVDCP-PTFTMYEFDAAVNGAAVVKVP--RKSD 202
+ +++ G + IDL + + +PG I+ P P F++Y+ A G V +
Sbjct: 118 AKDVILTSGCSQAIDLCLAVLANPGQNIL-VPRPGFSLYKTLAESMGIEVKLYNLLPEKS 176
Query: 203 FSLNVELIADAVEREKPKCIFLTSPNNPDG 232
+ ++++ + ++ EK C+ + +P+NP G
Sbjct: 177 WEIDLKQLEYLID-EKTACLIVNNPSNPCG 205
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism,
pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A
{Trypanosoma cruzi} SCOP: c.67.1.1
Length = 416
Score = 66.9 bits (164), Expect = 5e-13
Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 15/137 (10%)
Query: 101 DANENPYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADE 157
N Y P PE REA+ + S + D++++ G
Sbjct: 65 SQECNGYFPTVGSPEAREAVAT-WW--------RNSFVHKEELKSTIVKDNVVLCSGGSH 115
Query: 158 LIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVE 215
I + + + D GD + P F YE G + ++D+ +++ I +
Sbjct: 116 GILMAITAICDAGDYALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKD 175
Query: 216 REKPKCIFLTSPNNPDG 232
+K K + +T+P+NP G
Sbjct: 176 -DKTKLLIVTNPSNPCG 191
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas
aeruginosa}
Length = 412
Score = 66.5 bits (163), Expect = 6e-13
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 14/137 (10%)
Query: 109 PPPEVREALGQ-LKFP--YIYPDPE-SRRLRAALA----KDSGLESD---HILVGCGADE 157
PP + E L + + Y RLR A++ ++ D +V G+ E
Sbjct: 51 TPPHIVEKLCTVAQREDTHGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKE 110
Query: 158 LIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVE 215
+ +M LD GD I+ P++ ++ + A + GA V VP DF +E
Sbjct: 111 GLAHLMLATLDHGDTILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRES- 169
Query: 216 REKPKCIFLTSPNNPDG 232
KP+ + L P+NP
Sbjct: 170 IPKPRMMILGFPSNPTA 186
>1xi9_A Putative transaminase; alanine aminotransferase, southeast
collaboratory for structural genomics, secsg; HET: PLP;
2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Length = 406
Score = 65.7 bits (161), Expect = 1e-12
Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 30/151 (19%)
Query: 94 PEDIVK-----IDANENPYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE 145
PE + + I N YG PE+R+A+ + + + +G++
Sbjct: 56 PEHMKEAYCKAIKEGHNYYGDSEGLPELRKAIVE-RE----------------KRKNGVD 98
Query: 146 --SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKS 201
D + V E + LI +LDPGD+I+ P++ Y G V+ +
Sbjct: 99 ITPDDVRVTAAVTEALQLIFGALLDPGDEILVPGPSYPPYTGLVKFYGGKPVEYRTIEEE 158
Query: 202 DFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
D+ +++ I + ++ K I + +PNNP G
Sbjct: 159 DWQPDIDDIRKKIT-DRTKAIAVINPNNPTG 188
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS
protein structure initiative, joint center for
structural G transferase; HET: PLP; 1.90A {Thermotoga
maritima} SCOP: c.67.1.1
Length = 389
Score = 65.6 bits (161), Expect = 1e-12
Identities = 33/151 (21%), Positives = 59/151 (39%), Gaps = 30/151 (19%)
Query: 94 PEDIVK-----IDANENPYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE 145
PE +V+ + E Y P E+RE + + + + +
Sbjct: 56 PEPVVEEAVRFLQKGEVKYTDPRGIYELREGIAK-RI----------------GERYKKD 98
Query: 146 --SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKS 201
D ++V GA + + +LDPGD+++ P + Y + G V V
Sbjct: 99 ISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSK 158
Query: 202 DFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
+F ++E + + K K + + SPNNP G
Sbjct: 159 NFQPSLEEVEGLL-VGKTKAVLINSPNNPTG 188
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP,
cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP;
2.00A {Saccharomyces cerevisiae}
Length = 447
Score = 63.9 bits (156), Expect = 6e-12
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 23/148 (15%)
Query: 107 YGPPPEVREALGQ---LKFPYIY-PDPESRRLRAALA----KDSGLE--SDHILVGCGAD 156
Y PP + + + Y P L +L E ++++ V GA+
Sbjct: 69 YSPPQFAIKEAQKALDIPMVNQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGAN 128
Query: 157 ELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP------------RKSDFS 204
E I + +L+ GD+++ P F Y + + G VV VP R +++
Sbjct: 129 EGILSCLMGLLNAGDEVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWT 188
Query: 205 LNVELIADAVEREKPKCIFLTSPNNPDG 232
++ E A+ K K + + +P+NP G
Sbjct: 189 IDFEQFEKAI-TSKTKAVIINTPHNPIG 215
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural
genomics consortium, pyridoxal phosphate; HET: PLP;
2.30A {Homo sapiens}
Length = 498
Score = 62.9 bits (153), Expect = 1e-11
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 17/116 (14%)
Query: 134 LRAALA-----KDSGLESD--HILVGCGADELIDLIMRCVLDPGDKIVD---CP-PTFTM 182
+R +A +D G+ +D +I + GA + I I++ ++ G K P P + +
Sbjct: 134 IREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGGKSRTGVMIPIPQYPL 193
Query: 183 YEFDAAVNGAAVVKVPRK--SDFSLNVE----LIADAVEREKPKCIFLTSPNNPDG 232
Y + A V + ++LNV + +A + PK + + +P NP G
Sbjct: 194 YSAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTG 249
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for
structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter
pylori 26695}
Length = 376
Score = 62.2 bits (152), Expect = 1e-11
Identities = 40/175 (22%), Positives = 65/175 (37%), Gaps = 22/175 (12%)
Query: 73 KLKPYQPILPFEVLS--IQLGRKPEDIVKIDANE-NPYGPPPE-VREALGQ-LKFPYIYP 127
+PY PFE L ++ + +D P P+ +++AL IYP
Sbjct: 3 TFEPY----PFERLRALLKEITPKKRG--LDLGIGEPQFETPKFIQDALKNHTHSLNIYP 56
Query: 128 DPE-SRRLRAALAK------DSGLESDHILVGCGADELIDLIMRCVLD--PGDKIVDCPP 178
LRAA L+ + ++ G+ E++ VL I P
Sbjct: 57 KSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFVLFDYQNPTIAYPNP 116
Query: 179 TFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGR 233
+ +YE A A + +P + L + E ++ + L SPNNP GR
Sbjct: 117 FYQIYEGAAKFIKAKSLLMPLTKENDFTPSL--NEKELQEVDLVILNSPNNPTGR 169
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET:
DCS; 2.71A {Hordeum vulgare}
Length = 500
Score = 61.0 bits (148), Expect = 6e-11
Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 14/113 (12%)
Query: 134 LRAALA----KDSGLESD--HILVGCGADELIDLIMRCVL-DPGDKIVDCPPTFTMYEFD 186
LR A+A G ++ I + GA + L+M+ ++ + D I+ P + +Y
Sbjct: 139 LRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKDGILVPIPQYPLYSAS 198
Query: 187 AAVNGAAVVKVPRK--SDFSLNVELIADAVERE-----KPKCIFLTSPNNPDG 232
A++G A+V + + L + +E + + + +P NP G
Sbjct: 199 IALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTG 251
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate,
aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes
faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Length = 546
Score = 60.6 bits (147), Expect = 7e-11
Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 18/159 (11%)
Query: 92 RKPEDIVKIDANENPYGPPPEVREA-LGQLKFPYIYPD--PESRR--LRAALAKDSGL-- 144
R + ++ P + E G L Y P +R + ++ G
Sbjct: 101 RFLGKSLSYVRDQLGLDPAAFLHEMVDGILGCNYPVPPRMLNISEKIVRQYIIREMGADA 160
Query: 145 ---ESDHILVGCGADELI-----DLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVK 196
ES ++ G + L + +L GDK+ P FT Y + A+ +
Sbjct: 161 IPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYALEE 220
Query: 197 VPRKSDFSLNVELIADAVER---EKPKCIFLTSPNNPDG 232
V +D SLN + +++ K F +P+NP
Sbjct: 221 VAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPPS 259
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint
center for structural genomics, JCSG, prote structure
initiative; HET: LLP; 2.15A {Lactobacillus acidophilus
ncfm}
Length = 533
Score = 60.6 bits (147), Expect = 7e-11
Identities = 32/164 (19%), Positives = 49/164 (29%), Gaps = 22/164 (13%)
Query: 89 QLGRKPEDIVKIDANENPYGPPPE-VREA-LGQLKFPYIYPDPESRRLRAALAK------ 140
+ D V E + V E G + Y PD +
Sbjct: 97 DEDKFLIDAVNYCHTE-LGLNRDKVVAEWVNGAVANNYPVPDRCLVNTEKIINYFLQELS 155
Query: 141 --DSGLESDH-ILVGCGADELI-----DLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGA 192
D+ L + G I L +L GDKI P FT Y +
Sbjct: 156 YKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDY 215
Query: 193 AVVKVP----RKSDFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
+V+V K+D+ + I + K + + +P NP
Sbjct: 216 ELVEVDLHSYEKNDWEIEPNEIEKLKD-PSIKALIVVNPTNPTS 258
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate
aminotransferase; HET: PGU; 1.67A {Thermus thermophilus}
PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Length = 397
Score = 59.9 bits (146), Expect = 1e-10
Identities = 26/116 (22%), Positives = 56/116 (48%), Gaps = 15/116 (12%)
Query: 126 YPDPE-SRRLRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE 184
Y E LRA +A+ G+ + +L+ G+ + +DL+ + LD G ++ P++
Sbjct: 70 YSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVFLDEGSPVLLEAPSYM--- 126
Query: 185 FDAAVN-----GAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPN--NPDGR 233
A+ G + VP + +++ + + ++RE+P+ ++ P+ NP G
Sbjct: 127 --GAIQAFRLQGPRFLTVPAGEE-GPDLDALEEVLKRERPRFLY-LIPSFQNPTGG 178
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP;
1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A*
1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Length = 385
Score = 59.1 bits (144), Expect = 2e-10
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 30/151 (19%)
Query: 94 PEDIVK-----IDANENPYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE 145
PE + + + + Y PP PE+REAL + KF +++GL
Sbjct: 46 PEHVKEAARRALAQGKTKYAPPAGIPELREALAE-KF----------------RRENGLS 88
Query: 146 --SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKS 201
+ +V G + + + + +LDPGD+++ P + Y G VV+V +
Sbjct: 89 VTPEETIVTVGGSQALFNLFQAILDPGDEVIVLSPYWVSYPEMVRFAGGVVVEVETLPEE 148
Query: 202 DFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
F + E + A+ + K + + SPNNP G
Sbjct: 149 GFVPDPERVRRAI-TPRTKALVVNSPNNPTG 178
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum}
SCOP: c.67.1.1
Length = 388
Score = 55.6 bits (135), Expect = 3e-09
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 30/151 (19%)
Query: 94 PEDIVK-----IDANENPYGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE 145
P+ IV+ ++ + YGP P +REA+ Q K +D+GL
Sbjct: 45 PKHIVEAAKAALEQGKTRYGPAAGEPRLREAIAQ-KL----------------QRDNGLC 87
Query: 146 --SDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVP--RKS 201
+D+ILV G + I +M +++PGD+++ P + Y + V +P ++
Sbjct: 88 YGADNILVTNGGKQSIFNLMLAMIEPGDEVIIPAPFWVSYPEMVKLAEGTPVILPTTVET 147
Query: 202 DFSLNVELIADAVEREKPKCIFLTSPNNPDG 232
F ++ E I A+ K K + +P+NP G
Sbjct: 148 QFKVSPEQIRQAI-TPKTKLLVFNTPSNPTG 177
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE
structural genomics, JCSG, protein structure initiative;
HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Length = 396
Score = 52.6 bits (127), Expect = 3e-08
Identities = 48/188 (25%), Positives = 76/188 (40%), Gaps = 35/188 (18%)
Query: 71 LRKLKPYQPILPFEVLSIQLGRKPEDIVKIDANE-------NPYGPPPE-VREALGQ-LK 121
L++LKPY PF +L + I + E P P P+ + +AL L
Sbjct: 6 LKQLKPY----PFA----RLHEAMQGISAPEGMEAVPLHIGEPKHPTPKVITDALTASLH 57
Query: 122 FPYIYPDPE-SRRLRAALA-------KDSGLESD-HILVGCGADELIDLIMRCVLDP--- 169
YP LR A A +++D IL G+ E + ++ VL+P
Sbjct: 58 ELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVSD 117
Query: 170 --GDKIVDCP-PTFTMYEFDAAVNGAAVVKVP-RKSDFSLNVELIADAVEREKPKCIFLT 225
IV P P + +YE + G + F+ + I++ V ++ K +F+
Sbjct: 118 GIKPAIV-SPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEV-WKRTKLVFVC 175
Query: 226 SPNNPDGR 233
SPNNP G
Sbjct: 176 SPNNPSGS 183
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5'
phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A
{Chlamydomonas reinhardtii}
Length = 449
Score = 52.3 bits (126), Expect = 4e-08
Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 23/144 (15%)
Query: 109 PPPEVREAL-------GQLKFPYIYPDPES--RRLRAALA----KDSGLESDHILVGCGA 155
P + +A+ + Y E LR A+A +G +D I + G+
Sbjct: 83 LPKYIADAMAKAAAGLATREGYSGYG-AEQGQGALREAVASTFYGHAGRAADEIFISDGS 141
Query: 156 DELIDLI-MRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIA--- 211
D+ ++ + + P++ +Y + + G D +
Sbjct: 142 KC--DIARIQMMFGSKPTVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNH 199
Query: 212 ---DAVEREKPKCIFLTSPNNPDG 232
D + ++ IF SPNNP G
Sbjct: 200 FFPDLSKAKRTDIIFFCSPNNPTG 223
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent
aminotransferase; 2.05A {Chlamydia trachomatis} PDB:
3asb_A*
Length = 400
Score = 51.4 bits (124), Expect = 7e-08
Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 25/140 (17%)
Query: 109 PPPEVREAL-------GQLKFPYIYPDPES--RRLRAALA---KDSGLESDHILVGCGAD 156
V EA Y P+ LR L+ +++ I + GA
Sbjct: 47 LNASVAEAFASSIARLSSPTTCRGYG-PDFGLPALRQKLSEDFYRGFVDAKEIFISDGAK 105
Query: 157 ELIDLI-MRCVLDPGDKIVDCPPTFTMYEFDAAVNGA-AVVKVP--RKSDFSLNVELIAD 212
DL + P + P++ Y A + GA ++ +P +++ F +
Sbjct: 106 V--DLFRLLSFFGPNQTVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAF------FPE 157
Query: 213 AVEREKPKCIFLTSPNNPDG 232
E + L SPNNP G
Sbjct: 158 FPEDTHIDILCLCSPNNPTG 177
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics,
joint center for structural genomics, JCSG, prote
structure initiative; HET: MSE; 1.80A {Salmonella
typhimurium}
Length = 417
Score = 51.1 bits (123), Expect = 1e-07
Identities = 20/144 (13%), Positives = 39/144 (27%), Gaps = 36/144 (25%)
Query: 107 YGPP---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLE--SDHILVGCGADELIDL 161
Y P + AL L L + G + +I + G+
Sbjct: 71 YDGPQGKTALLNALAVL-----------------LRETLGWDIEPQNIALTNGSQSAFFY 113
Query: 162 IMRCVLDPGDKIVDCPPTFTMY-EFDAAVN-----------GAAVVKVPRKSDFSLNVEL 209
+ F + E+ + + +P + F +V+
Sbjct: 114 LFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLP-EGQFKYHVDF 172
Query: 210 IADAVEREKPKCIFLTSPNNPDGR 233
+ E+ I ++ P NP G
Sbjct: 173 EHLHI-GEETGMICVSRPTNPTGN 195
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal
5' phosphat external aldimine, chloroplast, pyridox
phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB:
3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A
3eia_A*
Length = 432
Score = 49.9 bits (120), Expect = 3e-07
Identities = 28/145 (19%), Positives = 46/145 (31%), Gaps = 23/145 (15%)
Query: 109 PPPEVREAL-------GQLKFPYIYPDPES--RRLRAALA----KDSGLESDHILVGCGA 155
P + A+ ++ Y E + LRAA+A G+ D + V GA
Sbjct: 70 IPEVITSAMAKKAHELSTIEGYSGYG-AEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGA 128
Query: 156 DELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVEL------ 209
I + + + I P++ Y + + G + +
Sbjct: 129 KCDISRL-QVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPEN 187
Query: 210 --IADAVEREKPKCIFLTSPNNPDG 232
D + IF SPNNP G
Sbjct: 188 GFFPDLSTVGRTDIIFFCSPNNPTG 212
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple
complex, schiff-base linkage, kynuren aminotransferase;
HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A*
3ath_A* 3av7_A* 1x0m_A 1wst_A*
Length = 448
Score = 49.2 bits (118), Expect = 4e-07
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 25/126 (19%)
Query: 126 YPDPE-SRRLRAALA---KDSGL--ESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPT 179
Y + LR L + + I++ G+ + +DLI R L+PGD +V PT
Sbjct: 114 YGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVFLNPGDIVVVEAPT 173
Query: 180 FTMYEFDAAVN-----GAAVVKVPRKSDFSLNVELIADAVER-----EKPKCIFLTSPN- 228
+ AA+ +++P + + VE++ + ++ +K K ++ T P
Sbjct: 174 YL-----AALQAFNFYEPQYIQIPLDDE-GMKVEILEEKLKELKSQGKKVKVVY-TVPTF 226
Query: 229 -NPDGR 233
NP G
Sbjct: 227 QNPAGV 232
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate
aminotransferase, archaea, thermococcus L transferase;
HET: PMP; 2.30A {Thermococcus litoralis}
Length = 407
Score = 49.2 bits (118), Expect = 4e-07
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 26/127 (20%)
Query: 126 YPDPE-SRRLRAALA----KDSGLE--SDHILVGCGADELIDLIMRCVLDPGDKIVDCPP 178
Y LR LA K LE ++I++ G +DL+ R ++DPGD ++ P
Sbjct: 71 YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVLIDPGDVVITENP 130
Query: 179 TFTMYEFDAAVN-----GAAVVKVPRKSDFSLNVELIADAVER-----EKPKCIFLTSPN 228
++ + GA + VP +D + V+L+ + ++ +K K I+ T P
Sbjct: 131 SYI-----NTLLAFEQLGAKIEGVPVDND-GMRVDLLEEKIKELKAKGQKVKLIY-TIPT 183
Query: 229 --NPDGR 233
NP G
Sbjct: 184 GQNPMGV 190
>1vp4_A Aminotransferase, putative; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP:
c.67.1.1
Length = 425
Score = 49.2 bits (118), Expect = 4e-07
Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 29/130 (22%)
Query: 126 YPDPE-SRRLRAALAK-------DSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCP 177
Y E L+ + K +GL+ D+++ G+ + +DLI + LD V
Sbjct: 81 YSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLFLDDESYCVLDD 140
Query: 178 PTFTMYEFDAAVN-----GAAVVKVPRKSDFSLNVELIADAVER-------EKPKCIFLT 225
P + A+N A V VP + D +++ ++ + ++ K I+
Sbjct: 141 PAYL-----GAINAFRQYLANFVVVPLEDD-GMDLNVLERKLSEFDKNGKIKQVKFIY-V 193
Query: 226 SPN--NPDGR 233
N NP G
Sbjct: 194 VSNFHNPAGV 203
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint
center for structural genomics, JCSG; 2.60A {Deinococcus
geothermalis dsm 11300}
Length = 423
Score = 47.3 bits (113), Expect = 2e-06
Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 17/101 (16%)
Query: 142 SGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCP-PTFTMYEFDAAVN-----GAAVV 195
S LE +++ + L K++ P +D G ++
Sbjct: 96 SSLELQGLVLTFALLHGVRGSTGPWLSQTPKMI-VTVPG-----YDRHFLLLQTLGFELL 149
Query: 196 KVPRKSDFSLNVELIADAV-EREKPKCIFLTSPN--NPDGR 233
V +SD +V+ + K I P NP G
Sbjct: 150 TVDMQSD-GPDVDAVERLAGTDPSVKGIL-FVPTYSNPGGE 188
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha
& beta protein, PLP-dependent transferase, aminotransf
mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB:
2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Length = 425
Score = 46.9 bits (112), Expect = 2e-06
Identities = 33/202 (16%), Positives = 62/202 (30%), Gaps = 45/202 (22%)
Query: 65 SFIRSHLRKLKPYQP-------------ILPFEVLSIQLGRKPEDIVKIDANENP--YGP 109
S IR+ L + PF+ I + + + Y P
Sbjct: 17 SPIRTMTDILSRGPKSMISLAGGLPNPNMFPFKTAVITVENGKTIQFGEEMMKRALQYSP 76
Query: 110 P---PEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMRCV 166
PE+ L QL+ + + V G+ + + + +
Sbjct: 77 SAGIPELLSWLKQLQ--------IKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMI 128
Query: 167 LDPGDKIVDCPPTF--TMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVER-------- 216
++PGD ++ P + T+ G ++ V + + + D + R
Sbjct: 129 INPGDNVLLDEPAYSGTLQSLHPL--GCNIINVASDES-GIVPDSLRDILSRWKPEDAKN 185
Query: 217 ---EKPKCIFLTSPN--NPDGR 233
PK ++ T PN NP G
Sbjct: 186 PQKNTPKFLY-TVPNGNNPTGN 206
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain,
small C-TER domain, open alpha-beta structure.,
transferase; HET: PLP; 2.50A {Escherichia coli} SCOP:
c.67.1.3
Length = 390
Score = 46.0 bits (110), Expect = 5e-06
Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 16/142 (11%)
Query: 109 PPPEVREALGQ-LKFP-YIYPDPESRRLRAALAK------DSGLESDHILVGCGADELID 160
P + EAL Q L + Y ++ AA+A + ++S ++ G ++
Sbjct: 42 TAPCIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVS 101
Query: 161 LIMRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSD---FSLNVELIADAVE 215
++R + G+ +V P + F A+ N V+ V + + ++ + +
Sbjct: 102 ELIRQWSETGEGVVIHTPAY--DAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLA 159
Query: 216 REKPKCIFLTSPNNPDGRFSWT 237
+ + K + L SP NP G+ WT
Sbjct: 160 KPECKIMLLCSPQNPTGK-VWT 180
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe
structural genomics, PSI-2, protein structure
initiative; 2.00A {Corynebacterium diphtheriae}
Length = 422
Score = 45.8 bits (109), Expect = 6e-06
Identities = 25/122 (20%), Positives = 46/122 (37%), Gaps = 30/122 (24%)
Query: 134 LRAALAKDSGLESDHILVGCGADELI--DLIMRCVL------------DPGDKIVDCP-P 178
+R A+ GL +D ++ G+ I DLI + K + CP P
Sbjct: 81 IRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWL-CPVP 139
Query: 179 TFTMYEFDAAVN-----GAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPN--NPD 231
+D G ++ VP + ++ ++ + V+ + K ++ T P NP
Sbjct: 140 G-----YDRHFTITEHFGFEMINVPMTDE-GPDMGVVRELVKDPQVKGMW-TVPVFGNPT 192
Query: 232 GR 233
G
Sbjct: 193 GV 194
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 6e-06
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 22/120 (18%)
Query: 65 SFIRSHLRKLKPYQPILPFEVLSIQLG--RKPEDIVKIDANENPYGPPPEVREALGQLKF 122
S I HL+ ++ + + F ++ + + KI + + + L QLKF
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ-----KIRHDSTAWNASGSILNTLQQLKF 529
Query: 123 --PYIYP-DPESRRLRAALAKDSGLESDHILVGCGADELI----DLIMRCVLDPGDKIVD 175
PYI DP+ RL A+ L + + DL+ ++ + I +
Sbjct: 530 YKPYICDNDPKYERLVNAIL--------DFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Score = 35.6 bits (81), Expect = 0.014
Identities = 32/216 (14%), Positives = 54/216 (25%), Gaps = 90/216 (41%)
Query: 81 LPFEVLSIQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAK 140
+ FE Q K DI+ + E+ + V + D ++ L+K
Sbjct: 7 MDFETGEHQYQYK--DILSV--FEDAF-----VDN----FDCKDV-QD----MPKSILSK 48
Query: 141 DSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTF------TMYEF--------- 185
+ E DHI++ A + +L +++V F Y+F
Sbjct: 49 E---EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ---KFVEEVLRINYKFLMSPIKTEQ 102
Query: 186 --------------DAAVNGAAVVK---VPRKSDF--------SLNVE------------ 208
D N V V R + L
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 209 ---LIADAVEREKPKCIFLTSPNNPDGRFSWTSSWI 241
+ D K +C F W+
Sbjct: 163 KTWVALDVCLSYKVQCKM------DFKIF-----WL 187
Score = 35.6 bits (81), Expect = 0.015
Identities = 25/213 (11%), Positives = 58/213 (27%), Gaps = 77/213 (36%)
Query: 67 IRSHLRKLKPYQPI--------------------------LPFEVLSIQLGR--KPEDIV 98
+R L +L+P + + + F++ + L PE ++
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 99 KIDAN-----ENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGC 153
++ + + + + R+ + A+ L C
Sbjct: 200 EMLQKLLYQIDPNWTSRSD-------------HSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 154 GADELIDLIMRCVLDPGDKIVD-----CPPTFTMYEFDAAVNGAAVVKVPRKSDFSLN-- 206
L L++ V + K + C T V + + SL+
Sbjct: 247 ----L--LVLLNVQNA--KAWNAFNLSCKILLTTR--FKQV--TDFLSAATTTHISLDHH 294
Query: 207 ---------VELIADAVEREK---PKCIFLTSP 227
L+ ++ P+ + T+P
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Score = 27.5 bits (60), Expect = 5.6
Identities = 33/202 (16%), Positives = 59/202 (29%), Gaps = 57/202 (28%)
Query: 11 SLCLLKSNFSSHPFVVPNRTVC---PFQGNQRRVIAM-SSTLPVEQQVNEGQRRLTGDSF 66
LL P +P R V P +++ + ++ + + + D
Sbjct: 303 VKSLLLKYLDCRPQDLP-REVLTTNPR------RLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 67 ---IRSHLRKLKP------YQ---------PILPFEVLSIQLGRKPEDIVKIDANENPYG 108
I S L L+P + I P +LS+ + V + N+
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-PTILLSLIWFDVIKSDVMVVVNK---- 410
Query: 109 PPPEVREAL---GQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELID--LIM 163
+ +L + P L+ L + L H ++D I
Sbjct: 411 ---LHKYSLVEKQPKESTISIPS-IYLELKVKLENEYAL---H-------RSIVDHYNIP 456
Query: 164 RCVLDPGDKIVDCPPTFTMYEF 185
+ D D I PP Y +
Sbjct: 457 KT-FDSDDLI---PPYLDQYFY 474
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent
aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus
aureus}
Length = 430
Score = 45.4 bits (108), Expect = 7e-06
Identities = 26/146 (17%), Positives = 47/146 (32%), Gaps = 17/146 (11%)
Query: 103 NENPYGPPPEVREALGQLK----FPYIYPD--PESRRLRAALAK--DSGLESDH---ILV 151
N++ + L FPY P E R L + L D+ +V
Sbjct: 59 NKDGKMFASSLDAMFNDLTPDEIFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIV 118
Query: 152 GCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPR--KSDFSLNVEL 209
+ L+ ++ D I+ + Y+ A ++ D +
Sbjct: 119 TNALTHGLSLVGDLFVNQDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFDKDGHYTTDS 178
Query: 210 IADAVEREKPKC---IFLTSPNNPDG 232
+ +A++ K + L PNNP G
Sbjct: 179 LVEALQ-SYNKDKVIMILNYPNNPTG 203
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like
fold structural genomics, joint center for structural
genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium
glutamicum}
Length = 427
Score = 45.1 bits (107), Expect = 9e-06
Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 30/122 (24%)
Query: 134 LRAALAKDSGLESDHILVGCGADELI--------------DLIMRCVLDPGDKIVDCP-P 178
+R A G+ + +L G + I D + + K + CP P
Sbjct: 83 IRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWI-CPVP 141
Query: 179 TFTMYEFDAAVN-----GAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPN--NPD 231
+D + G ++ VP D +++ + + V+ + K ++ P NP
Sbjct: 142 G-----YDRHFSITERFGFEMISVPMNED-GPDMDAVEELVKNPQVKGMW-VVPVFSNPT 194
Query: 232 GR 233
G
Sbjct: 195 GF 196
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative
PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A
{Lactobacillus delbrueckii subsp}
Length = 391
Score = 44.4 bits (106), Expect = 1e-05
Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 21/144 (14%)
Query: 109 PPPEVREALGQ-LKFP---YIYPDPESRRLRAALAK------DSGLESDHILVGCGADEL 158
PE+ ++ + LK Y E A+A + + D + G
Sbjct: 41 IAPEIMASMEEKLKVAAFGYESVPAE---YYKAVADWEEIEHRARPKEDWCVFASGVVPA 97
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSD---FSLNVELIADA 213
I ++R PGD+I+ P + F + + NG V+ + +S+N + +
Sbjct: 98 ISAMVRQFTSPGDQILVQEPVY--NMFYSVIEGNGRRVISSDLIYENSKYSVNWADLEEK 155
Query: 214 VEREKPKCIFLTSPNNPDGRFSWT 237
+ + + +P+NP G +W+
Sbjct: 156 LATPSVRMMVFCNPHNPIGY-AWS 178
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus}
PDB: 3b1c_A* 3b1e_A*
Length = 392
Score = 44.0 bits (105), Expect = 2e-05
Identities = 29/144 (20%), Positives = 54/144 (37%), Gaps = 21/144 (14%)
Query: 109 PPPEVREALGQ-LKFP---YIYPDPESRRLRAALAK------DSGLESDHILVGCGADEL 158
PEV++A+ + Y Y E L A+ + + I+ G
Sbjct: 45 VMPEVKQAIHDYAEQLVYGYTYASDE---LLQAVLDWEKSEHQYSFDKEDIVFVEGVVPA 101
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSD---FSLNVELIADA 213
I + ++ G+ ++ P + F +V N +V K + F ++ E + +
Sbjct: 102 ISIAIQAFTKEGEAVLINSPVY--PPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLEND 159
Query: 214 VEREKPKCIFLTSPNNPDGRFSWT 237
+ K L +P+NP GR W
Sbjct: 160 IVENDVKLYLLCNPHNPGGR-VWE 182
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 3e-05
Identities = 35/184 (19%), Positives = 57/184 (30%), Gaps = 70/184 (38%)
Query: 38 QRRVIAMSSTLPVEQQV-----NEGQRR--LTGDSFIRS------HLRKLK----PYQPI 80
Q V +S LP +QV N G + ++G +S LRK K Q
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVN-GAKNLVVSG--PPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 81 LPFEVLSIQLGRKPEDIVK---IDANENPY------GPPPEVREALG---------QLKF 122
+PF RK + + + + P+ + + L ++
Sbjct: 407 IPFS------ERKLKFSNRFLPVAS---PFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 123 PYIYPDPES-RRLRAALAKDSGLESDHILVGCGADELIDLIMR-------CVLDPGDKIV 174
P +Y D LR S I + ++D I+R I+
Sbjct: 458 P-VY-DTFDGSDLRV--------LSGSIS-----ERIVDCIIRLPVKWETTTQFKATHIL 502
Query: 175 DCPP 178
D P
Sbjct: 503 DFGP 506
>3l8a_A METC, putative aminotransferase, probable beta-cystathi;
beta-cystathionase, lyase; HET: PLP; 1.54A
{Streptococcus mutans}
Length = 421
Score = 43.7 bits (104), Expect = 3e-05
Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 21/144 (14%)
Query: 109 PPPEVREALGQ-LKFP---YIYPDPESRRLRAALAK------DSGLESDHILVGCGADEL 158
P PE++EA+ + Y Y + + L A+ D + + IL G
Sbjct: 75 PVPEIKEAIINYGREHIFGYNYFNDD---LYQAVIDWERKEHDYAVVKEDILFIDGVVPA 131
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSD---FSLNVELIADA 213
I + ++ + GD ++ P + Y F + N +V+ + F ++ E +
Sbjct: 132 ISIALQAFSEKGDAVLINSPVY--YPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKD 189
Query: 214 VEREKPKCIFLTSPNNPDGRFSWT 237
+ K L SP+NP GR W
Sbjct: 190 IIDNNVKIYLLCSPHNPGGR-VWD 212
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate;
HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3
PDB: 1c7o_A*
Length = 399
Score = 43.3 bits (103), Expect = 3e-05
Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 21/144 (14%)
Query: 109 PPPEVREALGQ-LKFP---YIYPDPESRRLRAALAK------DSGLESDHILVGCGADEL 158
PPE+ E L + L Y P E + + K +++D I+ G
Sbjct: 45 NPPELIEGLKKYLDETVLGYTGPTEE---YKKTVKKWMKDRHQWDIQTDWIINTAGVVPA 101
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSD---FSLNVELIADA 213
+ +R PGD ++ P + Y F A+ +++ ++++ + +
Sbjct: 102 VFNAVREFTKPGDGVIIITPVY--YPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKL 159
Query: 214 VEREKPKCIFLTSPNNPDGRFSWT 237
+ + K + SP+NP GR W
Sbjct: 160 SKDKNNKALLFCSPHNPVGR-VWK 182
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase;
PLP-dependent transferase-like fold, structural
genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Length = 377
Score = 42.1 bits (100), Expect = 8e-05
Identities = 18/141 (12%), Positives = 40/141 (28%), Gaps = 21/141 (14%)
Query: 109 PPPEVREALGQ-LKFP---YIYPDPESRRLRAALAK------DSGLESDHILVGCGADEL 158
P V +A+ ++ Y L A A+ + I
Sbjct: 37 TCPAVLQAITDAVQREAFGYQPDGSL---LSQATAEFYADRYGYQARPEWIFPIPDVVRG 93
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSDFSLNVELIADAVER 216
+ + + K++ P + F + + + +N+ + +
Sbjct: 94 LYIAIDHFTPAQSKVIVPTPAY--PPFFHLLSATQREGIFIDAT--GGINLHDVEKGF-Q 148
Query: 217 EKPKCIFLTSPNNPDGRFSWT 237
+ I L +P NP G +
Sbjct: 149 AGARSILLCNPYNPLGM-VFA 168
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus
anthracis str} PDB: 3t32_A*
Length = 383
Score = 40.9 bits (97), Expect = 2e-04
Identities = 24/144 (16%), Positives = 54/144 (37%), Gaps = 22/144 (15%)
Query: 109 PPPEVREALGQ-LKFP---YIYPDPESRRLRAALAK------DSGLESDHILVGCGADEL 158
P ++ AL + ++ P Y P + + + ++ + I+ G
Sbjct: 38 VPQPIQTALKKRIEHPIFGYTLPPEN---IGDIICNWTKKQYNWDIQKEWIVFSAGIVPA 94
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKSD---FSLNVELIADA 213
+ ++ + ++ PP + F V N + P + ++++ E +
Sbjct: 95 LSTSIQAFTKENESVLVQPPIY--PPFFEMVTTNNRQLCVSPLQKQNDTYAIDFEHLEKQ 152
Query: 214 VEREKPKCIFLTSPNNPDGRFSWT 237
++ K + L SP+NP GR W
Sbjct: 153 F-QQGVKLMLLCSPHNPIGR-VWK 174
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Length = 444
Score = 40.1 bits (94), Expect = 4e-04
Identities = 16/134 (11%), Positives = 37/134 (27%), Gaps = 34/134 (25%)
Query: 134 LRAALA----KDSGLE--SDHILVGCGA----DELIDLIMRCVLDPGDKIVDCP------ 177
AL + S++I + G+ L +L ++ + +
Sbjct: 88 FIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSI 147
Query: 178 -----PTFTMYEFDAAVNGA------AVVKVPRKSD-----FSLNVELIADAVE--REKP 219
P + Y + +V + + ++ E + + +
Sbjct: 148 LLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRI 207
Query: 220 KCIFLTSPNNPDGR 233
I + P NP G
Sbjct: 208 GAICCSRPTNPTGN 221
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural
genomics, niaid, national institute of allergy AN
infectious diseases; HET: PLP; 1.50A {Clostridium
difficile} PDB: 4dgt_A*
Length = 391
Score = 38.3 bits (90), Expect = 0.001
Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 36/151 (23%)
Query: 109 PPPEVREALGQ-LKFP---YIYPDPESRRLRAALAK------DSGLESDHILVGCGADEL 158
P + ++L L+ Y ++ + ++S+ ++ G
Sbjct: 46 AAPCIIDSLKNRLEQEIYGYTTRPDS---YNESIVNWLYRRHNWKIKSEWLIYSPGVIPA 102
Query: 159 IDLIMRCVLDPGDKIVDCPPTFTMYEFDAAV--NGAAVVKVPRKS--------DFSLNVE 208
I L++ + DKI+ P + F++ V N ++ P + D+
Sbjct: 103 ISLLINELTKANDKIMIQEPVY--SPFNSVVKNNNRELIISPLQKLENGNYIMDY----- 155
Query: 209 LIADAVER--EKPKCIFLTSPNNPDGRFSWT 237
+ +E + K L +P+NP GR WT
Sbjct: 156 ---EDIENKIKDVKLFILCNPHNPVGR-VWT 182
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics,
seattle structural genomics center for infectious
disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A
{Mycobacterium ulcerans} PDB: 3qi6_A*
Length = 392
Score = 35.6 bits (83), Expect = 0.010
Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 27/131 (20%)
Query: 113 VREALGQLKFPYIYPDPESRRL---RAALAKD-SGLES-DHILV---GCGADELIDLIMR 164
++ +G L+ Y Y +R R AL + +E G A D +R
Sbjct: 47 AQDGVGGLRGGYEY----ARTGNPTRTALEAALAAVEDAAFGRAFSSGMAA---ADCALR 99
Query: 165 CVLDPGDKIVDCPP-----TFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKP 219
+L PGD +V P TF + + V + +++ + A+ R
Sbjct: 100 AMLRPGDHVV-IPDDAYGGTFRLIDKVFTGWNVEYTPV----ALA-DLDAVRAAI-RPTT 152
Query: 220 KCIFLTSPNNP 230
+ I++ +P NP
Sbjct: 153 RLIWVETPTNP 163
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent
enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A
{Escherichia coli} SCOP: c.67.1.3
Length = 386
Score = 32.9 bits (76), Expect = 0.084
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 152 GCGADELIDLIMRCVLDPGDKIVDCPP-----TFTMYEFDAAVNGAAVVKVPRKSDFSLN 206
G A I L+ L PGD +V P ++ +++ A V+ V D +
Sbjct: 76 GMSA---IHLVTTVFLKPGDLLV-APHDCYGGSYRLFDSLAKRGCYRVLFV----DQG-D 126
Query: 207 VELIADAVEREKPKCIFLTSPNNP 230
+ + A+ EKPK + + SP+NP
Sbjct: 127 EQALRAAL-AEKPKLVLVESPSNP 149
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 32.9 bits (75), Expect = 0.11
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 6/54 (11%)
Query: 148 HILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKS 201
H GA + + +L+ G I+ P D + V P K+
Sbjct: 1384 HPKGAAGAWMMNGALQ--ILNSG--II--PGNRNADNVDKILEQFEYVLYPSKT 1431
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase
involved in aluminum resist structural genomics; HET:
MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Length = 427
Score = 32.5 bits (74), Expect = 0.11
Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 20/135 (14%)
Query: 112 EVREALGQLKFPYIYPD---PESRRLRAALAK-DSGLESDHILVGCGADELIDLIMRCVL 167
+ EA Y Y D + A + +S L H + G A + + L
Sbjct: 56 RISEAHFTNSSGYGYGDIGRDSLDAVYARVFNTESALVRPHFVNGTHA---LGAALFGNL 112
Query: 168 DPGDKIV--DCPPTFTMYE--------FDAAVN--GAAVVKVPRKSDFSLNVELIADAVE 215
PG+ ++ P T+++ ++ G +V K D N+E I +
Sbjct: 113 RPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVL- 171
Query: 216 REKPKCIFLTSPNNP 230
+E + +
Sbjct: 172 KEDESITLVHIQRST 186
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance;
putative cystathionine beta-lyase involved in aluminum
resis structural genomics; HET: LLP; 1.91A {Listeria
monocytogenes str} PDB: 3fd0_A*
Length = 409
Score = 32.1 bits (73), Expect = 0.16
Identities = 25/126 (19%), Positives = 42/126 (33%), Gaps = 19/126 (15%)
Query: 123 PYIYPD---PESRRLRAALAK-DSGLESDHILVGCGADELIDLIMRCVLDPGDKIV--DC 176
Y Y D R+ A + K ++ L I+ G A I ++ +L P D+++
Sbjct: 53 GYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHA---ISTVLFGILRPDDELLYITG 109
Query: 177 PPTFTMYEFDAAVN---------GAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSP 227
P T+ E VP + ++ IA + K K I +
Sbjct: 110 QPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKM-TPKTKMIGIQRS 168
Query: 228 NNPDGR 233
R
Sbjct: 169 RGYADR 174
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia
coli} SCOP: d.151.1.1
Length = 268
Score = 31.7 bits (73), Expect = 0.19
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 23/94 (24%)
Query: 94 PEDIVKIDANENPYGPP------PEVREALGQLK-------FPYIYPDPESR------RL 134
DI + N + PE RE + +L F + P R R
Sbjct: 158 DLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYR- 216
Query: 135 RAALAKDSGLESDHILVGCGADELIDLIMRCVLD 168
+ GL D +L + L + + +D
Sbjct: 217 SKGFDDNRGLRIDLLLA---SQPLAECCVETGID 247
>1k0m_A CLIC1, NCC27, chloride intracellular channel protein 1;
glutathione-S-tranferase superfamily, chloride ION
channel, metal transport; 1.40A {Homo sapiens} SCOP:
a.45.1.1 c.47.1.5 PDB: 1k0n_A* 1k0o_A 1rk4_A 3uvh_A
3o3t_A 3p90_A 3qr6_A 3p8w_A 3tgz_A 3ma4_A 3swl_A
Length = 241
Score = 31.0 bits (70), Expect = 0.24
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 81 LPFEVLSIQLGRKPEDIVKIDANENPYGPPP 111
+ F V ++ R+ E + K+ P G P
Sbjct: 39 VTFNVTTVDTKRRTETVQKL----CPGGELP 65
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease,
lyase; 1.7A {Archaeoglobus fulgidus}
Length = 257
Score = 30.9 bits (71), Expect = 0.26
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 15/70 (21%)
Query: 111 PEVREALGQLK-------FPYIYPDPESR-----RLRAALAKDSGLESDHILVGCGADEL 158
+ R A ++ I+P+ R++ A+ + G D IL L
Sbjct: 170 EDARRAYKKILELGFVDVLRKIHPNERIYTFYDYRVKGAIERGLGWRGDAILAT---PPL 226
Query: 159 IDLIMRCVLD 168
+ + C D
Sbjct: 227 AERCVDCYAD 236
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis,
pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A
{Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A*
1i43_A*
Length = 445
Score = 31.1 bits (71), Expect = 0.29
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 21/100 (21%)
Query: 135 RAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPP----TFTMYEFDAAVN 190
+ L SG+ A +++ ++ G IV T E
Sbjct: 130 ESTLLMASGM---------CA---STVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKM 177
Query: 191 GAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNP 230
G + D + +V + A+ ++K F SP NP
Sbjct: 178 GITATVI----DPA-DVGALELALNQKKVNLFFTESPTNP 212
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 30.3 bits (69), Expect = 0.54
Identities = 21/139 (15%), Positives = 42/139 (30%), Gaps = 24/139 (17%)
Query: 108 GPPPEVREAL-----GQLKFPYIYPDPESRRLRAALAKDSGLESDHILV---GCGADELI 159
G P++ + + Q Y D + + + + G +
Sbjct: 25 GMHPKILDLMARDNMTQHA-GY-GQDSHCAKAARLIGELLERPDADVHFISGGTQTNL-- 80
Query: 160 DLIMRCVLDPGDKIVDCPPT--FTMYEFDA-AVNGAAVVKVPRKSDFSLNVELIADAVER 216
+ L P + ++ + +E A G VV P D L V I A+
Sbjct: 81 -IACSLALRPWEAVI-ATQLGHISTHETGAIEATGHKVVTAPCP-DGKLRVADIESALHE 137
Query: 217 E------KPKCIFLTSPNN 229
PK +++++
Sbjct: 138 NRSEHMVIPKLVYISNTTE 156
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.59
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 16/40 (40%)
Query: 51 EQQVNEGQRRLTGDSFIRSHLRKLKPYQP-ILPFEVLSIQ 89
+Q + ++L LK Y P L+I+
Sbjct: 19 KQAL----KKLQA---------SLKLYADDSAP--ALAIK 43
Score = 26.1 bits (56), Expect = 9.0
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 6/26 (23%)
Query: 95 EDIVKIDANENPYGP--PPEVREALG 118
+ + K+ A+ Y P AL
Sbjct: 20 QALKKLQASLKLYADDSAP----ALA 41
>2ahe_A Chloride intracellular channel protein 4; glutathione-S-transferase
superfamily, CLIC4, NCC27, chloride ION channel, metal
transport; 1.80A {Homo sapiens} PDB: 2d2z_A
Length = 267
Score = 30.0 bits (67), Expect = 0.61
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 81 LPFEVLSIQLGRKPEDIVKIDANENPYGPPP 111
+ F V ++ L RKP D+ + P PP
Sbjct: 50 VVFSVTTVDLKRKPADLQNL----APGTHPP 76
>2r4v_A XAP121, chloride intracellular channel protein 2; chloride
intracellular channels, CLIC2, pore-forming protein
ryanodine receptor, chloride channel; HET: GSH; 1.85A
{Homo sapiens} PDB: 2r5g_A 2per_A*
Length = 247
Score = 29.9 bits (67), Expect = 0.68
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 81 LPFEVLSIQLGRKPEDIVKIDANENPYGPPP 111
+ F V ++ + RKPE++ + P PP
Sbjct: 45 VKFNVTTVDMTRKPEELKDL----APGTNPP 71
>3fy7_A Chloride intracellular channel protein 3; GST, glutathione, CLIC,
chloride channel, ION transport, ionic channel, nucleus,
transport, gated channel; 1.95A {Homo sapiens} PDB:
3kjy_A
Length = 250
Score = 30.0 bits (67), Expect = 0.69
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 81 LPFEVLSIQLGRKPEDIVKIDANENPYGPPP 111
+PF + ++ R P+ + P P
Sbjct: 57 VPFTLTTVDTRRSPDVLKDF----APGSQLP 83
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 30.1 bits (68), Expect = 0.72
Identities = 32/166 (19%), Positives = 53/166 (31%), Gaps = 38/166 (22%)
Query: 92 RKPEDIVKIDANENPYGPPPEVREA------------------LGQLKFPYIYPDPESRR 133
R+ +D + ID + E R+A L ++K P I+ +
Sbjct: 4 RETKDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIH---DFIH 60
Query: 134 LRAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYE----FDAAV 189
+ L D V GA E +M + +V + AA
Sbjct: 61 NQLPKF----LGCDVARVTNGAREAKFAVMHSLAKKDAWVV-----MDENCHYSSYVAAE 111
Query: 190 -NGAAVVKVP--RKSDFSLNVELIADAV-EREKPKCIFLTSPNNPD 231
G + VP D+++ E A + E +K + L PD
Sbjct: 112 RAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPD 157
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A
{Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A*
1ukj_A* 2o7c_A*
Length = 398
Score = 29.8 bits (68), Expect = 0.85
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
Query: 152 GCGADELIDLIMRCVLDPGDKIVDCPP----TFTMYEFDAAVNGAAVVKVPRKSDFSLNV 207
G GA I + +L PGD+++ TF G + V D + ++
Sbjct: 89 GMGA---ITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHV----DMA-DL 140
Query: 208 ELIADAVEREKPKCIFLTSPNNP 230
+ + A+ + I+ SP NP
Sbjct: 141 QALEAAM-TPATRVIYFESPANP 162
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 29.6 bits (67), Expect = 0.89
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 194 VVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRF 234
+ P K D++++ + + DAVE I + G
Sbjct: 147 YIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTI 187
>3ue3_A Septum formation, penicillin binding protein 3, peptidoglycan
synthetase; transpeptidase, transferase; 2.30A
{Acinetobacter}
Length = 554
Score = 29.5 bits (67), Expect = 1.00
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 110 PPEVREALGQLKFPYIYPDPESRR 133
PP+ + + Q F +Y + +R
Sbjct: 116 PPQQADLILQHNFQGVYTEKSYKR 139
>3pbt_A Penicillin-binding protein 3; PBP3, hydrolase-antibiotic complex;
HET: UE1; 1.64A {Pseudomonas aeruginosa} PDB: 3pbn_A*
3pbo_A* 3pbr_A* 3pbs_A* 3pbq_A* 3oc2_A 3ocl_A* 3ocn_A*
Length = 538
Score = 29.5 bits (67), Expect = 1.0
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 110 PPEVREALGQLKFPYIYPDPESRR 133
PE E + LK P +Y E RR
Sbjct: 89 TPEQGEGVIALKVPGVYSIEEFRR 112
>2yv7_A CG10997-PA, LD46306P, CLIC; dmclic, chloride ION channel, GST fold,
metal transport; 1.70A {Drosophila melanogaster}
Length = 260
Score = 29.3 bits (65), Expect = 1.1
Identities = 5/31 (16%), Positives = 11/31 (35%), Gaps = 4/31 (12%)
Query: 81 LPFEVLSIQLGRKPEDIVKIDANENPYGPPP 111
+ +V ++ + + P D PP
Sbjct: 59 ISLKVTTVDMQKPPPDFRTN----FEATHPP 85
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA
repair, exonuclease, endonuclease; HET: 1PE; 1.90A
{Neisseria meningitidis}
Length = 256
Score = 29.0 bits (66), Expect = 1.1
Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 18/71 (25%)
Query: 111 PEVREALGQLK-------FPYIYPDPES------RRLRAALAKDSGLESDHILVGCGADE 157
R+ L ++P+ R + GL DHILV
Sbjct: 170 SVERQWFQNLLDLGLTDSLRQVHPEGAFYTWFDYRGA--MFQRKLGLRIDHILVS---PA 224
Query: 158 LIDLIMRCVLD 168
+ + +D
Sbjct: 225 MAAALKDVRVD 235
>1j1i_A META cleavage compound hydrolase; carbazole degradation, META
cleavage product hydrolase, histidine tagged protein,
alpha/beta-hydrolase; 1.86A {Janthinobacterium} SCOP:
c.69.1.10
Length = 296
Score = 29.3 bits (66), Expect = 1.2
Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 10/68 (14%)
Query: 105 NPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILVGCGADELIDLIMR 164
G E+ E L P I D + + L +D + D +I+
Sbjct: 138 GSAGLVVEIHEDL----RPIINYDFTREGMVHLVKA---LTNDGFKID---DAMINSRYT 187
Query: 165 CVLDPGDK 172
D +
Sbjct: 188 YATDEATR 195
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 483
Score = 29.0 bits (65), Expect = 1.4
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 16/82 (19%)
Query: 148 HIL---VGCGADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNGAAVVKVPRKSDFS 204
HI+ + C R G + T + E D + G A ++
Sbjct: 62 HIVHGPIACAGS---SWDNRGTRSSGPDLYRIGMTTDLTENDV-IMGRAEKRL------- 110
Query: 205 LNVELIADAVEREKPKCIFLTS 226
I AVE P +F+ +
Sbjct: 111 --FHAIRQAVESYSPPAVFVYN 130
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog;
NP_348457.1, putative cystathionine beta-lyase involved
in A resistance; HET: LLP MSE; 2.00A {Clostridium
acetobutylicum}
Length = 427
Score = 29.0 bits (65), Expect = 1.5
Identities = 21/133 (15%), Positives = 43/133 (32%), Gaps = 23/133 (17%)
Query: 123 PYIYPD---PESRRLRAALAK-DSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPP 178
Y Y D R+ A + +S H + G A I + L P D ++
Sbjct: 68 GYGYNDIGRDSLDRVYANIFNTESAFVRPHFVNGTHA---IGAALFGNLRPNDTMMS--I 122
Query: 179 TFTMYEFDAAV---NGAAVVKVPRK----------SDFSLNVELIADAVEREKP-KCIFL 224
Y+ + + + V R+ D +++ + + ++++ K I +
Sbjct: 123 CGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDLKDGKVDINTVKEELKKDDSIKLIHI 182
Query: 225 TSPNNPDGRFSWT 237
R S
Sbjct: 183 QRSTGYGWRKSLR 195
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine
biosynthesis, transsulfurat lyase; HET: PLP; 2.30A
{Arabidopsis thaliana} SCOP: c.67.1.3
Length = 464
Score = 28.8 bits (65), Expect = 1.8
Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 16/84 (19%)
Query: 152 GCGADELIDLIMRCVLDPGDKIVDCPP-----TFTMYEFDAAVNGAAVVKVPRKSDFSLN 206
G A + + ++ G++IV + + +G V +V + +
Sbjct: 157 GMAA---LSAVTH-LIKNGEEIV-AGDDVYGGSDRLLSQVVPRSGVVVKRV----NTT-K 206
Query: 207 VELIADAVEREKPKCIFLTSPNNP 230
++ +A A+ + K ++L SP NP
Sbjct: 207 LDEVAAAI-GPQTKLVWLESPTNP 229
>3equ_A PBP-2, penicillin-binding protein 2; class B transpeptidase, cell
DIV cell inner membrane, cell membrane, cell shape; HET:
SEP; 2.40A {Neisseria gonorrhoeae} PDB: 3eqv_A*
Length = 542
Score = 28.7 bits (65), Expect = 1.9
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 110 PPEVREALGQLKFPYIYPDPESRR 133
P+V E + L + E +R
Sbjct: 105 DPKVAEEVKALGLENFVFEKELKR 128
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent
enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB:
1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Length = 398
Score = 28.7 bits (65), Expect = 1.9
Identities = 24/100 (24%), Positives = 34/100 (34%), Gaps = 22/100 (22%)
Query: 135 RAALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPP----TFTMYEFDAAVN 190
A LA SG+ A I + + GD IV T
Sbjct: 80 EAGLATASGI---------SA---ITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKF 127
Query: 191 GAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNP 230
G V V D + E I A+ R + K +++ +P NP
Sbjct: 128 GINVRFV----DAA-KPEEIRAAM-RPETKVVYIETPANP 161
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent
enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas
vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Length = 404
Score = 28.3 bits (64), Expect = 2.2
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 13/83 (15%)
Query: 152 GCGADELIDLIMRCVLDPGDKIVDCPP----TFTMYEFDAAVNGAAVVKVPRKSDFSLNV 207
G GA I + +L GD ++ T ++E G V + + +
Sbjct: 86 GMGA---IAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGIQVDFI----NTA-IP 137
Query: 208 ELIADAVEREKPKCIFLTSPNNP 230
+ + + K ++ +P NP
Sbjct: 138 GEVKKHM-KPNTKIVYFETPANP 159
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein,
structural genomics, PSI-2, protein STRU initiative;
HET: ADP; 2.47A {Synechocystis SP}
Length = 209
Score = 28.2 bits (63), Expect = 2.2
Identities = 7/55 (12%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 173 IVDCPPTFTMYEFDAAVNGAAVVKVP-RKSDFSL--NVELIADAVEREKPKCIFL 224
++D + +A +G ++ +P +L + I + + L
Sbjct: 72 VIDTQARPEDEDLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRIL 126
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 28.3 bits (64), Expect = 2.3
Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 20/136 (14%)
Query: 108 GPPPEVREALGQ--LKFPYIY-PDPESRRLRAALAKDSGLESDHILV--GCGADELIDLI 162
G PEV +AL + Y D + +++ + + + LV G A+ L
Sbjct: 19 GASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANA---LC 75
Query: 163 MRCVLDPGDKIVDCPPT--FTMYEFDAAVNGAAVVKVP--RKSDFSLNVELIADAVERE- 217
+ + P I C P E A + K+ L++ + + +
Sbjct: 76 LSAMTPPWGNIY-CHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKV 134
Query: 218 ------KPKCIFLTSP 227
+P C+ +T
Sbjct: 135 GDVHTTQPACVSITQA 150
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine
BEAT-lyase, aluminium resistance protein, Q81A77_baccr,
NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Length = 431
Score = 28.2 bits (63), Expect = 2.5
Identities = 27/129 (20%), Positives = 45/129 (34%), Gaps = 19/129 (14%)
Query: 124 YIYPD---PESRRLRAALAK-DSGLESDHILVGCGADELIDLIMRCVLDPGDKIV--DCP 177
Y Y D ++ A + ++GL I+ G A I + +L PGD+++
Sbjct: 60 YGYDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHA---ISTALFGILRPGDELLYITGK 116
Query: 178 PTFTMYEFDAAVN---------GAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPN 228
P T+ E VP ++ E +A A+ K I +
Sbjct: 117 PYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAI-HSNTKMIGIQRSK 175
Query: 229 NPDGRFSWT 237
R S+T
Sbjct: 176 GYATRPSFT 184
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC,
inhibitor, structural genom stockholm, structural
genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB:
2nmp_A* 3elp_B
Length = 403
Score = 27.9 bits (63), Expect = 3.3
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 16/84 (19%)
Query: 152 GCGADELIDLIMRCVLDPGDKIVDCPP-----TFTMYEFDAAVNGAAVVKVPRKSDFSLN 206
G A I +L GD+I+ C T + A+ G + V D S
Sbjct: 91 GLAA---TVTITH-LLKAGDQII-CMDDVYGGTNRYFRQVASEFGLKISFV----DCS-K 140
Query: 207 VELIADAVEREKPKCIFLTSPNNP 230
++L+ A+ + K +++ +P NP
Sbjct: 141 IKLLEAAI-TPETKLVWIETPTNP 163
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis}
SCOP: c.67.1.3
Length = 331
Score = 27.8 bits (63), Expect = 3.6
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 13/83 (15%)
Query: 152 GCGADELIDLIMRCVLDPGDKIVDCPP----TFTMYEFDAAVNGAAVVKVPRKSDFSLNV 207
G GA I + L GD ++ T ++E G V + D +
Sbjct: 22 GMGA---IAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFI----DMA-VP 73
Query: 208 ELIADAVEREKPKCIFLTSPNNP 230
I + + + ++ +P NP
Sbjct: 74 GNIEKHL-KPNTRIVYFETPANP 95
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics
center for infectious disease, S mycobacterium, PLP,
schiff base; HET: LLP; 1.85A {Mycobacterium
tuberculosis}
Length = 414
Score = 27.5 bits (62), Expect = 3.9
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 22/99 (22%)
Query: 136 AALAKDSGLESDHILVGCGADELIDLIMRCVLDPGDKIVDCPPTF--TMYEFDAAVN--G 191
AA A SG+ A + + +L GD++V F + G
Sbjct: 98 AAFATASGM---------AA---VFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWG 145
Query: 192 AAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNP 230
V V D ++ A+ + +F +P+NP
Sbjct: 146 VQTVFV----DGD-DLSQWERAL-SVPTQAVFFETPSNP 178
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein
structure initiative; 2.20A {Thermoplasma acidophilum
dsm 1728} SCOP: a.4.5.28 b.43.5.2
Length = 230
Score = 27.0 bits (59), Expect = 5.5
Identities = 24/132 (18%), Positives = 53/132 (40%), Gaps = 5/132 (3%)
Query: 90 LGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHI 149
L + D+ +I A +N V +G+ ++ Y+ + + L L + +I
Sbjct: 78 LYTEFADLSRILAIKNNVVITGTVTSGMGEGRY-YVARKQYIIQFQEKLGIIPYLGTLNI 136
Query: 150 LVGCGADELIDLIMRCVLDPGDKIVDCPPTF-TMYEFDAAVNG--AAVVKVPRKSDFSLN 206
V + + I + TF ++ F A + V+ +P ++ ++
Sbjct: 137 KVDQASLPELRKIRGFRGIHIEGFKTEDRTFGSVKAFPAKIQNIPCFVI-MPERTVYTDV 195
Query: 207 VELIADAVEREK 218
+E+I+D RE+
Sbjct: 196 IEIISDKYLREE 207
>4dlo_A Brain-specific angiogenesis inhibitor 3; GAIN domain, includes GPS
motif, autoproteolytic fold, extra signaling protein;
HET: NAG FUL; 2.30A {Homo sapiens}
Length = 382
Score = 27.1 bits (58), Expect = 5.5
Identities = 10/63 (15%), Positives = 22/63 (34%)
Query: 177 PPTFTMYEFDAAVNGAAVVKVPRKSDFSLNVELIADAVEREKPKCIFLTSPNNPDGRFSW 236
P ++ + + P+ +D L +EL A P C+ + +W
Sbjct: 281 PTLRNYTVINSKIIVVTIRPEPKTTDSFLEIELAHLANGTLNPYCVLWDDSKTNESLGTW 340
Query: 237 TSS 239
++
Sbjct: 341 STQ 343
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba
histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A*
3aeo_A* 3aep_A*
Length = 389
Score = 27.1 bits (61), Expect = 5.9
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 13/83 (15%)
Query: 152 GCGADELIDLIMRCVLDPGDKIVDCPP----TFTMYEFDAAVNGAAVVKVPRKSDFSLNV 207
G GA I L GD ++ T +++ G V + D S +V
Sbjct: 83 GMGA---ISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGIEVDLI----DTS-DV 134
Query: 208 ELIADAVEREKPKCIFLTSPNNP 230
E + A + K ++L SP NP
Sbjct: 135 EKVKAAW-KPNTKMVYLESPANP 156
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote
structure initiative, NEW YORK SGX research center for
STRU genomics; 1.88A {Caenorhabditis elegans}
Length = 481
Score = 27.2 bits (61), Expect = 6.0
Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 24/103 (23%)
Query: 37 NQRRVIAMSSTLPVEQQVNEGQRRLTGDSFIRSHLRKLKPYQPILPFEVLS--------- 87
+++ ST+PV +S I LR+ + L F+VLS
Sbjct: 126 GGPKIVVEKSTVPV----------KAAES-IGCILREAQKNNENLKFQVLSNPEFLAEGT 174
Query: 88 -IQLGRKPEDIVKIDANENPYGPPPEVREALGQLKFPYIYPDP 129
++ P+ ++ I +P G + L ++ ++ +
Sbjct: 175 AMKDLANPDRVL-IGGESSPEG--LQAVAELVRIYENWVPRNR 214
>3lyp_A Stringent starvation protein A; structural genomics,
GST-superfamily, SSPA, stringent starva protein A
homolog, PSI-2; 1.60A {Pseudomonas fluorescens} PDB:
3mdk_A
Length = 215
Score = 26.9 bits (60), Expect = 6.4
Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Query: 81 LPFEVLSIQLGRKPEDIVKIDANENPYGPPP 111
+ E++S++ GR+P ++++ NPYG P
Sbjct: 32 VSAEIISVEAGRQPPKLIEV----NPYGSLP 58
>1yy7_A SSPA, stringent starvation protein A; GST fold, transcription; HET:
CIT; 2.02A {Yersinia pestis}
Length = 213
Score = 26.5 bits (59), Expect = 7.1
Identities = 6/28 (21%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 81 LPFEVLSIQLGRKPEDIVKIDANENPYG 108
+ E+ ++ P+D++ + NPY
Sbjct: 34 VSVEIEQVEADNLPQDLIDL----NPYR 57
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor
covalently bound to inhibitor; HET: P3F; 1.78A
{Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A*
1cl2_A*
Length = 415
Score = 26.8 bits (60), Expect = 7.8
Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 15/84 (17%)
Query: 152 GCGADELIDLIMRCVLDPGDKIVDCP-----PTFTMYEFDAAVNGAAVVKVPRKSDFSLN 206
G A + + ++ GD ++ P+ + G L
Sbjct: 106 GAAA---VANSILAFIEQGDHVL-MTNTAYEPSQDFCSKILSKLGVTTSWFD-----PLI 156
Query: 207 VELIADAVEREKPKCIFLTSPNNP 230
I + + K +FL SP +
Sbjct: 157 GADIVKHL-QPNTKIVFLESPGSI 179
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase;
substrate, PLP, crystal, complex, hydrolase; HET: PLP;
1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A*
1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Length = 338
Score = 26.7 bits (59), Expect = 8.0
Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 107 YGPPPEVREALGQLKFPYIY-----PDPESRRLRAALAKDSGLESDHILVGCGADELIDL 161
G ++ A L + P+ + A+ G+ +D + G +I++
Sbjct: 246 VGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEM 305
Query: 162 IMRCVLDPGDKIV 174
+ G +++
Sbjct: 306 VRNGEFPEGSRVL 318
>3lyk_A Stringent starvation protein A homolog; structural genomics,
GST-superfamily, SSPA, PSI-2, protein structure
initiative; 2.10A {Haemophilus influenzae}
Length = 216
Score = 26.5 bits (59), Expect = 8.2
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 81 LPFEVLSIQLGRKPEDIVKIDANENPYG 108
+ +E + L PED++++ NPYG
Sbjct: 30 VLYENAEVDLQALPEDLMEL----NPYG 53
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase,
signal peptid processing, protein translocation; HET:
1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB:
3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Length = 248
Score = 26.4 bits (58), Expect = 8.6
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 155 ADELIDLIMRCVLDPGDKIVDCPPTFTMYEFDAAVNG 191
D +D I R V PGDK+ P + + +G
Sbjct: 62 EDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPGCSSG 98
>3vln_A GSTO-1, glutathione S-transferase omega-1; GST fold, reductase;
HET: ASC; 1.70A {Homo sapiens} PDB: 1eem_A* 3lfl_A*
Length = 241
Score = 26.6 bits (59), Expect = 8.8
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 81 LPFEVLSIQLGRKPEDIVKIDANENPYG 108
+ EV++I L KPE K NP+G
Sbjct: 47 IRHEVININLKNKPEWFFKK----NPFG 70
>3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle
structural genomics center for infectious diseases;
2.50A {Bartonella henselae}
Length = 233
Score = 26.3 bits (59), Expect = 9.4
Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 12/65 (18%)
Query: 106 PYG--------PPPEVREALGQLK--FPYIYPDPESRRLRAALAKDSGLESDHILVGCGA 155
P G + AL P + P R L A A+ S LV CG
Sbjct: 56 PAGGGAGMVMRADV-LAAALDSCPNDSPRLLMSPRGRLLNQAYARSLARSSGVTLV-CGR 113
Query: 156 DELID 160
E +D
Sbjct: 114 FEGVD 118
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin
nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Length = 715
Score = 26.6 bits (59), Expect = 9.6
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 21/87 (24%)
Query: 96 DIVKIDANENPYGPPPEVREALGQLKFPYIYPDPESRRLRAALAKDSGLESDHILV---- 151
+ + I+ P V E + + + P P++ ++ L LE + +L+
Sbjct: 6 EWMPIED----LKLPSNVIEIIKKRGIKKLNP-PQTEAVKKGL-----LEGNRLLLTSPT 55
Query: 152 GCG----ADELIDLIMRCVLDPGDKIV 174
G G A E+ I+ +L G K +
Sbjct: 56 GSGKTLIA-EM--GIISFLLKNGGKAI 79
>3quv_A TRNA (guanine-N(1)-)-methyltransferase; sssgcid, seattle structural
genomics center for infectious D ssgcid, tRNA
methyltransferase; 1.70A {Mycobacterium abscessus}
Length = 246
Score = 26.4 bits (59), Expect = 9.8
Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 13/66 (19%)
Query: 106 PYG--------PPPEVREALGQLKFPY---IYPDPESRRLRAALAKDSGLESDHILVGCG 154
PYG P +AL ++ + P P A E DH+++ CG
Sbjct: 56 PYGGGPGMVMKPTV-WGDALDEICTSETLLVVPTPAGYPFTQETAWQWSTE-DHLVIACG 113
Query: 155 ADELID 160
E ID
Sbjct: 114 RYEGID 119
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.415
Gapped
Lambda K H
0.267 0.0821 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,978,133
Number of extensions: 247043
Number of successful extensions: 815
Number of sequences better than 10.0: 1
Number of HSP's gapped: 713
Number of HSP's successfully gapped: 128
Length of query: 249
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 158
Effective length of database: 4,160,982
Effective search space: 657435156
Effective search space used: 657435156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)