BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025732
         (249 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2OT9|A Chain A, Crystal Structure Of Yaeq Protein From Pseudomonas
           Syringae
          Length = 180

 Score = 30.4 bits (67), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 108 IMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRT 167
           ++ Y F++N  L+    L  V EP+ W+  LD     VL+   +G        TWC  RT
Sbjct: 44  LLAYAFWYNEQLAFGRGLSDVDEPALWEKSLDD---RVLHWIEVGQPD-ADRLTWCSRRT 99


>pdb|3UGD|A Chain A, Structural And Functional Characterization Of An
           Anesthetic Binding Site In The Second Cysteine-Rich
           Domain Of Protein Kinase C Delta
 pdb|3UGD|B Chain B, Structural And Functional Characterization Of An
           Anesthetic Binding Site In The Second Cysteine-Rich
           Domain Of Protein Kinase C Delta
          Length = 65

 Score = 28.1 bits (61), Expect = 4.6,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 212 AVMWGKSKEEKTTEDCGLGSVNSSREKV 239
           +++WG  K+    EDCG+   +  REKV
Sbjct: 28  SLLWGLVKQGLKCEDCGMNVHHKCREKV 55


>pdb|3UFF|A Chain A, Structural And Functional Characterization Of An
           Anesthetic Binding Site In The Second Cysteine-Rich
           Domain Of Protein Kinase Cdelta
 pdb|3UFF|B Chain B, Structural And Functional Characterization Of An
           Anesthetic Binding Site In The Second Cysteine-Rich
           Domain Of Protein Kinase Cdelta
          Length = 65

 Score = 28.1 bits (61), Expect = 4.6,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 212 AVMWGKSKEEKTTEDCGLGSVNSSREKV 239
           +++WG  K+    EDCG+   +  REKV
Sbjct: 28  SLLWGLVKQGLKCEDCGMNVHHKCREKV 55


>pdb|3UEY|A Chain A, Structural And Functional Characterization Of An
           Anesthetic Binding Site In The Second Cysteine-Rich
           Domain Of Protein Kinase Cdelta
 pdb|3UEY|B Chain B, Structural And Functional Characterization Of An
           Anesthetic Binding Site In The Second Cysteine-Rich
           Domain Of Protein Kinase Cdelta
          Length = 65

 Score = 28.1 bits (61), Expect = 4.6,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 212 AVMWGKSKEEKTTEDCGLGSVNSSREKV 239
           +++WG  K+    EDCG+   +  REKV
Sbjct: 28  SLLWGLVKQGLKCEDCGMNVHHKCREKV 55


>pdb|3UEJ|A Chain A, Structural And Functional Characterization Of An
           Anesthetic Binding Site In The Second Cysteine-Rich
           Domain Of Protein Kinase Cdelta
 pdb|3UEJ|B Chain B, Structural And Functional Characterization Of An
           Anesthetic Binding Site In The Second Cysteine-Rich
           Domain Of Protein Kinase Cdelta
 pdb|3UGI|A Chain A, Structural And Functional Characterization Of An
           Anesthetic Binding Site In The Second Cysteine-Rich
           Domain Of Protein Kinase C Delta
 pdb|3UGI|B Chain B, Structural And Functional Characterization Of An
           Anesthetic Binding Site In The Second Cysteine-Rich
           Domain Of Protein Kinase C Delta
 pdb|3UGL|A Chain A, Structural And Functional Characterization Of An
           Anesthetic Binding Site In The Second Cysteine-Rich
           Domain Of Protein Kinase C Delta
 pdb|3UGL|B Chain B, Structural And Functional Characterization Of An
           Anesthetic Binding Site In The Second Cysteine-Rich
           Domain Of Protein Kinase C Delta
          Length = 65

 Score = 28.1 bits (61), Expect = 4.6,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 212 AVMWGKSKEEKTTEDCGLGSVNSSREKV 239
           +++WG  K+    EDCG+   +  REKV
Sbjct: 28  SLLWGLVKQGLKCEDCGMNVHHKCREKV 55


>pdb|1PTQ|A Chain A, Protein Kinase C Delta Cys2 Domain
 pdb|1PTR|A Chain A, Protein Kinase C Delta Cys2 Domain Complexed With Phorbol-
           13-Acetate
          Length = 50

 Score = 28.1 bits (61), Expect = 4.6,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 212 AVMWGKSKEEKTTEDCGLGSVNSSREKV 239
           +++WG  K+    EDCG+   +  REKV
Sbjct: 19  SLLWGLVKQGLKCEDCGMNVHHKCREKV 46


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.143    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,175,268
Number of Sequences: 62578
Number of extensions: 215272
Number of successful extensions: 448
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 443
Number of HSP's gapped (non-prelim): 7
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)