Query 025732
Match_columns 249
No_of_seqs 147 out of 1251
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:56:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 2.8E-31 6.2E-36 240.6 19.0 238 2-245 111-353 (358)
2 PRK11453 O-acetylserine/cystei 99.9 3.9E-26 8.5E-31 202.6 16.6 193 2-218 93-290 (299)
3 PRK11689 aromatic amino acid e 99.9 3.9E-25 8.5E-30 195.9 13.6 192 3-218 99-290 (295)
4 PRK11272 putative DMT superfam 99.9 1.9E-24 4.1E-29 191.2 15.3 187 2-219 103-289 (292)
5 TIGR00950 2A78 Carboxylate/Ami 99.9 1.6E-23 3.4E-28 181.3 16.3 179 2-210 80-259 (260)
6 TIGR00817 tpt Tpt phosphate/ph 99.9 2.7E-23 5.9E-28 184.4 12.7 193 3-223 99-301 (302)
7 PRK10532 threonine and homoser 99.9 1.3E-22 2.8E-27 179.6 16.1 187 3-225 105-291 (293)
8 PRK15430 putative chlorampheni 99.9 4.4E-22 9.5E-27 176.5 13.8 180 2-216 106-286 (296)
9 TIGR03340 phn_DUF6 phosphonate 99.9 9.8E-22 2.1E-26 172.9 11.3 182 2-212 96-280 (281)
10 PTZ00343 triose or hexose phos 99.8 5.7E-20 1.2E-24 166.7 13.8 187 2-216 147-349 (350)
11 PF06027 DUF914: Eukaryotic pr 99.8 2.5E-19 5.4E-24 160.4 15.0 200 3-223 113-313 (334)
12 COG0697 RhaT Permeases of the 99.8 1.9E-18 4.1E-23 150.4 15.7 183 2-216 103-288 (292)
13 KOG2765 Predicted membrane pro 99.7 8.8E-18 1.9E-22 148.9 9.6 198 2-218 192-393 (416)
14 TIGR00688 rarD rarD protein. T 99.7 6.2E-16 1.3E-20 134.1 11.4 150 2-190 103-255 (256)
15 TIGR00776 RhaT RhaT L-rhamnose 99.6 1.6E-15 3.5E-20 134.2 12.1 182 4-215 95-288 (290)
16 KOG4510 Permease of the drug/m 99.6 9.5E-17 2.1E-21 136.8 1.6 199 2-218 130-328 (346)
17 PF00892 EamA: EamA-like trans 99.6 4E-15 8.7E-20 113.8 10.3 125 86-214 1-125 (126)
18 PF08449 UAA: UAA transporter 99.6 1.5E-13 3.3E-18 122.2 16.1 200 3-220 98-302 (303)
19 COG2510 Predicted membrane pro 99.5 1E-13 2.3E-18 106.0 12.0 134 78-214 5-138 (140)
20 COG5006 rhtA Threonine/homoser 99.5 1E-13 2.2E-18 117.5 12.0 166 31-219 121-286 (292)
21 COG2962 RarD Predicted permeas 99.5 1.3E-12 2.9E-17 113.1 14.1 182 3-219 106-287 (293)
22 PRK15430 putative chlorampheni 99.3 1.9E-10 4.1E-15 102.0 15.3 139 73-215 5-145 (296)
23 KOG2766 Predicted membrane pro 99.2 1.6E-11 3.5E-16 104.4 7.2 185 8-218 117-302 (336)
24 KOG1441 Glucose-6-phosphate/ph 99.2 8.5E-11 1.8E-15 104.6 9.4 189 3-223 117-315 (316)
25 TIGR03340 phn_DUF6 phosphonate 99.2 8E-10 1.7E-14 97.2 15.5 134 78-216 3-136 (281)
26 TIGR00688 rarD rarD protein. T 99.2 7E-10 1.5E-14 96.1 14.8 136 76-214 2-141 (256)
27 PRK02971 4-amino-4-deoxy-L-ara 99.2 8.9E-10 1.9E-14 86.2 13.6 123 76-219 2-126 (129)
28 PF03151 TPT: Triose-phosphate 99.1 3.6E-09 7.8E-14 84.2 14.7 137 77-214 1-152 (153)
29 PF04142 Nuc_sug_transp: Nucle 99.0 9.6E-09 2.1E-13 88.8 13.5 191 4-206 52-244 (244)
30 PLN00411 nodulin MtN21 family 99.0 2E-08 4.3E-13 91.5 15.4 139 76-216 13-157 (358)
31 KOG1580 UDP-galactose transpor 99.0 3.4E-09 7.4E-14 89.5 9.5 192 4-216 120-314 (337)
32 PF13536 EmrE: Multidrug resis 98.9 9.4E-09 2E-13 78.4 10.2 108 111-219 3-110 (113)
33 TIGR00950 2A78 Carboxylate/Ami 98.9 2.7E-08 5.8E-13 85.9 13.2 120 88-216 1-120 (260)
34 PRK11272 putative DMT superfam 98.9 8.5E-08 1.8E-12 84.8 16.1 132 78-216 10-142 (292)
35 PRK11453 O-acetylserine/cystei 98.8 1.2E-07 2.5E-12 84.2 15.4 126 79-216 7-133 (299)
36 KOG2234 Predicted UDP-galactos 98.8 3E-07 6.4E-12 82.1 16.0 194 6-220 129-327 (345)
37 PRK11689 aromatic amino acid e 98.8 3.8E-07 8.2E-12 80.8 15.5 131 76-216 4-138 (295)
38 PTZ00343 triose or hexose phos 98.8 6.6E-07 1.4E-11 81.3 17.4 125 89-215 62-186 (350)
39 TIGR00817 tpt Tpt phosphate/ph 98.7 4.4E-07 9.4E-12 80.5 15.7 120 91-214 17-136 (302)
40 PRK15051 4-amino-4-deoxy-L-ara 98.7 2.2E-07 4.7E-12 70.8 10.8 66 149-214 43-108 (111)
41 KOG1581 UDP-galactose transpor 98.6 2.2E-07 4.7E-12 81.2 8.9 192 9-219 123-317 (327)
42 COG2962 RarD Predicted permeas 98.6 1.1E-06 2.3E-11 76.6 13.0 139 75-216 6-145 (293)
43 COG0697 RhaT Permeases of the 98.6 4.8E-06 1E-10 72.2 16.6 143 75-221 6-149 (292)
44 TIGR00803 nst UDP-galactose tr 98.5 2.7E-07 5.8E-12 78.4 8.1 195 3-212 12-221 (222)
45 KOG1444 Nucleotide-sugar trans 98.5 1.3E-06 2.9E-11 76.9 10.2 192 3-224 111-309 (314)
46 KOG3912 Predicted integral mem 98.4 1.6E-06 3.4E-11 75.3 8.9 193 4-214 121-333 (372)
47 KOG1583 UDP-N-acetylglucosamin 98.4 1E-05 2.2E-10 70.1 13.5 198 4-214 100-313 (330)
48 KOG1443 Predicted integral mem 98.4 5.8E-06 1.3E-10 72.5 12.2 183 3-213 118-313 (349)
49 TIGR00776 RhaT RhaT L-rhamnose 98.4 6E-06 1.3E-10 73.2 12.6 132 77-217 2-138 (290)
50 PRK10532 threonine and homoser 98.2 6.7E-05 1.5E-09 66.4 15.4 128 74-215 10-137 (293)
51 PF06800 Sugar_transport: Suga 98.2 4.1E-05 8.9E-10 66.8 12.7 178 7-212 84-268 (269)
52 PF04657 DUF606: Protein of un 98.2 0.00011 2.3E-09 58.2 14.0 131 78-212 3-138 (138)
53 KOG4314 Predicted carbohydrate 98.1 5.8E-06 1.3E-10 68.4 6.4 191 4-221 88-282 (290)
54 KOG1442 GDP-fucose transporter 98.1 4.9E-06 1.1E-10 72.0 5.6 195 4-223 137-335 (347)
55 PRK10452 multidrug efflux syst 98.1 3.5E-05 7.6E-10 59.4 9.1 69 149-217 36-105 (120)
56 KOG1582 UDP-galactose transpor 98.0 3E-05 6.5E-10 67.2 7.7 185 9-217 146-334 (367)
57 PRK09541 emrE multidrug efflux 97.9 7.1E-05 1.5E-09 56.9 8.7 68 150-217 37-105 (110)
58 PF08449 UAA: UAA transporter 97.9 0.00045 9.7E-09 61.5 14.0 125 90-220 14-141 (303)
59 PF06027 DUF914: Eukaryotic pr 97.8 0.00064 1.4E-08 61.4 13.8 77 141-218 78-154 (334)
60 PF05653 Mg_trans_NIPA: Magnes 97.7 7.4E-05 1.6E-09 66.6 6.3 199 6-221 87-298 (300)
61 COG2076 EmrE Membrane transpor 97.7 0.00032 7E-09 52.6 8.1 66 151-216 38-104 (106)
62 COG5070 VRG4 Nucleotide-sugar 97.6 0.0001 2.2E-09 62.3 5.4 143 74-218 153-299 (309)
63 PRK10650 multidrug efflux syst 97.6 0.0015 3.3E-08 49.4 11.3 64 151-214 43-107 (109)
64 COG3238 Uncharacterized protei 97.6 0.0035 7.6E-08 50.0 13.2 139 76-217 5-148 (150)
65 KOG4510 Permease of the drug/m 97.5 1.4E-05 3E-10 69.1 -0.9 134 75-216 37-170 (346)
66 PRK11431 multidrug efflux syst 97.5 0.00073 1.6E-08 50.9 8.5 66 150-215 36-102 (105)
67 PF05653 Mg_trans_NIPA: Magnes 97.5 0.00098 2.1E-08 59.4 10.8 119 73-215 4-122 (300)
68 PF00893 Multi_Drug_Res: Small 97.5 0.0012 2.6E-08 48.5 9.2 57 150-206 36-93 (93)
69 PRK13499 rhamnose-proton sympo 97.2 0.0043 9.2E-08 56.3 11.3 137 74-215 5-153 (345)
70 PRK13499 rhamnose-proton sympo 97.1 0.026 5.5E-07 51.3 15.4 199 6-216 111-342 (345)
71 PF06800 Sugar_transport: Suga 97.0 0.009 2E-07 52.3 11.0 81 141-222 44-129 (269)
72 PF13536 EmrE: Multidrug resis 97.0 0.00014 3E-09 55.2 -0.3 39 2-46 67-105 (113)
73 PF04142 Nuc_sug_transp: Nucle 96.7 0.0043 9.3E-08 53.7 6.4 67 154-220 28-94 (244)
74 KOG2922 Uncharacterized conser 96.4 0.0067 1.5E-07 53.9 5.7 192 4-217 99-308 (335)
75 COG4975 GlcU Putative glucose 96.2 0.0025 5.5E-08 54.7 1.9 137 77-223 3-144 (288)
76 PRK15051 4-amino-4-deoxy-L-ara 95.7 0.003 6.5E-08 48.0 0.3 38 3-46 71-108 (111)
77 PF10639 UPF0546: Uncharacteri 95.4 0.06 1.3E-06 41.0 6.5 57 157-213 55-112 (113)
78 KOG4314 Predicted carbohydrate 95.4 0.011 2.3E-07 49.4 2.5 78 156-233 66-145 (290)
79 KOG1441 Glucose-6-phosphate/ph 94.9 0.027 5.8E-07 50.6 3.6 121 91-214 32-154 (316)
80 KOG2765 Predicted membrane pro 94.8 0.033 7.3E-07 50.6 3.9 68 153-220 169-236 (416)
81 KOG2234 Predicted UDP-galactos 94.4 2.3 4.9E-05 38.6 14.6 136 78-216 17-165 (345)
82 KOG1444 Nucleotide-sugar trans 94.0 1.1 2.4E-05 40.0 11.6 113 93-213 29-147 (314)
83 KOG2922 Uncharacterized conser 93.3 0.04 8.7E-07 49.1 1.4 121 72-216 17-137 (335)
84 COG4975 GlcU Putative glucose 93.2 0.0039 8.5E-08 53.5 -4.8 182 8-214 99-284 (288)
85 PF06379 RhaT: L-rhamnose-prot 91.6 2.4 5.3E-05 38.4 10.5 140 73-216 4-154 (344)
86 KOG1580 UDP-galactose transpor 91.1 0.63 1.4E-05 40.1 6.0 142 83-231 20-174 (337)
87 PRK02237 hypothetical protein; 90.6 2 4.3E-05 32.3 7.5 45 174-218 64-108 (109)
88 KOG1443 Predicted integral mem 90.3 1.2 2.6E-05 39.7 7.2 71 147-218 89-159 (349)
89 PF04342 DUF486: Protein of un 89.6 0.43 9.4E-06 35.7 3.3 32 183-214 76-107 (108)
90 PF07857 DUF1632: CEO family ( 87.1 1.4 3.1E-05 38.3 5.5 127 77-216 1-135 (254)
91 PRK02971 4-amino-4-deoxy-L-ara 86.8 0.15 3.2E-06 39.8 -0.7 36 5-46 84-121 (129)
92 COG3169 Uncharacterized protei 86.6 1.8 3.8E-05 32.1 4.8 34 182-215 82-115 (116)
93 PRK10452 multidrug efflux syst 85.3 0.25 5.5E-06 38.0 -0.1 34 7-46 69-102 (120)
94 PF02694 UPF0060: Uncharacteri 84.8 2 4.4E-05 32.2 4.5 43 176-218 64-106 (107)
95 PRK10650 multidrug efflux syst 83.4 0.35 7.7E-06 36.6 -0.0 33 7-45 74-106 (109)
96 PRK09541 emrE multidrug efflux 82.4 0.41 8.9E-06 36.3 0.0 33 8-46 70-102 (110)
97 PRK11431 multidrug efflux syst 82.4 0.39 8.5E-06 36.1 -0.1 33 7-45 68-100 (105)
98 COG2076 EmrE Membrane transpor 81.4 0.45 9.7E-06 35.8 -0.1 33 7-45 69-101 (106)
99 TIGR00905 2A0302 transporter, 80.0 9.7 0.00021 35.8 8.4 60 174-241 393-452 (473)
100 KOG3912 Predicted integral mem 78.1 4.3 9.2E-05 36.0 4.8 58 158-215 101-158 (372)
101 KOG1442 GDP-fucose transporter 69.7 5.1 0.00011 35.4 3.2 110 102-213 58-172 (347)
102 PF04246 RseC_MucC: Positive r 69.5 3.9 8.5E-05 31.8 2.4 49 166-215 64-116 (135)
103 COG3086 RseC Positive regulato 67.0 8.6 0.00019 30.5 3.8 27 164-190 69-95 (150)
104 PRK13108 prolipoprotein diacyl 66.9 40 0.00087 32.0 8.9 46 171-216 225-275 (460)
105 COG1742 Uncharacterized conser 66.4 27 0.00059 26.1 6.0 45 174-218 63-107 (109)
106 PRK11469 hypothetical protein; 64.1 7.6 0.00017 32.2 3.2 43 173-215 44-87 (188)
107 PRK10862 SoxR reducing system 63.1 7.3 0.00016 31.2 2.8 22 169-190 74-95 (154)
108 COG5006 rhtA Threonine/homoser 61.4 1.2E+02 0.0025 26.8 10.9 102 77-187 13-115 (292)
109 PF00893 Multi_Drug_Res: Small 61.1 1.7 3.6E-05 31.7 -1.1 27 5-37 66-92 (93)
110 PF15102 TMEM154: TMEM154 prot 60.1 9.2 0.0002 30.4 2.8 20 202-221 68-87 (146)
111 PF00909 Ammonium_transp: Ammo 59.5 94 0.002 28.8 9.9 88 142-230 275-390 (399)
112 KOG4831 Unnamed protein [Funct 57.4 15 0.00032 27.7 3.3 56 158-213 67-123 (125)
113 KOG1581 UDP-galactose transpor 56.7 1.5E+02 0.0033 26.7 12.4 127 88-220 26-160 (327)
114 PF04306 DUF456: Protein of un 54.5 66 0.0014 25.3 6.9 73 141-223 32-105 (140)
115 TIGR00544 lgt prolipoprotein d 50.5 85 0.0018 27.6 7.7 46 171-216 213-267 (278)
116 PF10639 UPF0546: Uncharacteri 47.1 5.7 0.00012 30.2 -0.3 35 4-44 77-111 (113)
117 PF06379 RhaT: L-rhamnose-prot 45.1 2.4E+02 0.0053 25.7 11.6 177 28-215 134-340 (344)
118 PF07168 Ureide_permease: Urei 45.0 7.3 0.00016 34.9 0.0 130 82-214 2-145 (336)
119 KOG1583 UDP-N-acetylglucosamin 44.3 26 0.00056 31.1 3.3 67 157-223 78-145 (330)
120 PRK12437 prolipoprotein diacyl 42.7 1.2E+02 0.0025 26.6 7.2 47 170-216 205-256 (269)
121 TIGR00836 amt ammonium transpo 42.1 2.9E+02 0.0063 25.7 12.1 90 142-232 280-396 (403)
122 TIGR02840 spore_YtaF putative 40.7 39 0.00085 28.3 3.8 46 169-214 33-80 (206)
123 PRK06638 NADH:ubiquinone oxido 40.2 2.2E+02 0.0047 23.7 11.4 25 184-208 133-157 (198)
124 PF15099 PIRT: Phosphoinositid 39.1 13 0.00028 28.8 0.6 17 143-159 57-73 (129)
125 PF01350 Flavi_NS4A: Flaviviru 38.4 2E+02 0.0044 22.8 8.9 66 157-226 62-127 (144)
126 COG2034 Predicted membrane pro 38.1 35 0.00076 24.5 2.6 32 197-228 13-45 (85)
127 TIGR03810 arg_ornith_anti argi 37.8 2.7E+02 0.0058 26.0 9.4 42 177-218 391-432 (468)
128 PF05977 MFS_3: Transmembrane 37.5 3.8E+02 0.0083 25.8 15.1 40 173-212 350-389 (524)
129 PF11295 DUF3096: Protein of u 36.0 35 0.00077 20.7 2.0 32 180-211 1-32 (39)
130 PRK00052 prolipoprotein diacyl 35.0 1.6E+02 0.0036 25.6 7.0 46 171-216 208-258 (269)
131 TIGR01167 LPXTG_anchor LPXTG-m 33.7 64 0.0014 18.2 2.9 17 196-212 11-27 (34)
132 PF06609 TRI12: Fungal trichot 29.9 5.5E+02 0.012 25.3 11.8 21 27-47 236-256 (599)
133 COG4657 RnfA Predicted NADH:ub 29.4 61 0.0013 26.4 3.0 19 78-96 134-152 (193)
134 PF04632 FUSC: Fusaric acid re 29.2 1E+02 0.0022 30.1 5.2 41 6-46 27-67 (650)
135 COG1971 Predicted membrane pro 29.2 73 0.0016 26.5 3.5 43 173-215 44-87 (190)
136 PF07444 Ycf66_N: Ycf66 protei 29.1 46 0.001 23.9 2.1 28 193-220 3-30 (84)
137 TIGR02865 spore_II_E stage II 29.1 4.3E+02 0.0093 26.9 9.7 18 3-20 18-35 (764)
138 CHL00022 ndhC NADH dehydrogena 28.7 83 0.0018 24.0 3.6 21 218-238 37-57 (120)
139 PRK06073 NADH dehydrogenase su 28.1 85 0.0018 24.2 3.5 35 206-240 25-59 (124)
140 COG2271 UhpC Sugar phosphate p 27.9 93 0.002 29.4 4.3 60 177-241 167-227 (448)
141 PF06781 UPF0233: Uncharacteri 27.8 1.4E+02 0.003 21.6 4.3 55 140-214 30-84 (87)
142 MTH00092 ND3 NADH dehydrogenas 27.5 90 0.0019 23.4 3.5 36 204-239 17-52 (111)
143 TIGR00966 3a0501s07 protein-ex 27.4 2.4E+02 0.0052 24.1 6.7 41 168-208 122-162 (246)
144 PF01102 Glycophorin_A: Glycop 26.9 47 0.001 25.6 1.9 12 236-247 107-118 (122)
145 PF01618 MotA_ExbB: MotA/TolQ/ 26.9 1.6E+02 0.0036 22.6 5.1 23 147-169 67-89 (139)
146 PF02659 DUF204: Domain of unk 26.8 85 0.0018 20.9 3.0 38 169-206 26-63 (67)
147 PF11044 TMEMspv1-c74-12: Plec 26.6 52 0.0011 20.6 1.7 16 195-210 2-17 (49)
148 PF07214 DUF1418: Protein of u 25.2 1.6E+02 0.0034 21.7 4.3 18 199-216 49-66 (96)
149 PRK07928 NADH dehydrogenase su 25.0 1E+02 0.0022 23.5 3.5 19 218-236 34-52 (119)
150 MTH00136 ND3 NADH dehydrogenas 24.5 1.1E+02 0.0024 23.1 3.6 21 218-238 31-51 (116)
151 TIGR00304 conserved hypothetic 24.2 79 0.0017 22.3 2.5 13 200-212 15-27 (77)
152 PRK11357 frlA putative fructos 24.1 5E+02 0.011 23.9 8.7 39 176-215 390-433 (445)
153 KOG1330 Sugar transporter/spin 24.1 4.3E+02 0.0094 25.4 8.0 53 71-123 283-337 (493)
154 PRK05122 major facilitator sup 23.1 5.3E+02 0.011 22.8 15.5 35 181-215 353-387 (399)
155 PF06946 Phage_holin_5: Phage 23.1 3.1E+02 0.0067 20.1 6.4 42 146-189 9-50 (93)
156 PRK13727 conjugal transfer pil 22.8 80 0.0017 22.1 2.2 31 198-228 43-74 (80)
157 PF08693 SKG6: Transmembrane a 22.3 73 0.0016 19.5 1.7 18 201-218 21-38 (40)
158 PRK13022 secF preprotein trans 22.3 3.5E+02 0.0076 23.9 6.9 44 167-211 150-193 (289)
159 PRK10054 putative transporter; 22.3 5.8E+02 0.012 22.9 14.2 29 75-104 44-72 (395)
160 PF05297 Herpes_LMP1: Herpesvi 22.1 30 0.00064 30.8 0.0 11 74-84 105-115 (381)
161 MTH00042 ND3 NADH dehydrogenas 21.8 1.4E+02 0.0029 22.6 3.6 20 219-238 32-51 (116)
162 PRK10655 potE putrescine trans 21.7 3.7E+02 0.008 24.7 7.3 38 178-215 389-426 (438)
163 PRK10435 cadB lysine/cadaverin 21.7 6.4E+02 0.014 23.2 10.7 47 175-223 385-431 (435)
164 TIGR01129 secD protein-export 21.2 5.3E+02 0.011 23.9 8.1 40 169-208 272-311 (397)
165 KOG1684 Enoyl-CoA hydratase [L 21.1 33 0.00071 31.5 0.1 41 207-247 193-233 (401)
166 PF10457 MENTAL: Cholesterol-c 21.1 35 0.00076 27.9 0.2 17 232-248 144-160 (171)
167 MTH00018 ND3 NADH dehydrogenas 20.6 1.4E+02 0.0031 22.4 3.5 21 217-237 29-49 (113)
168 PRK11195 lysophospholipid tran 20.4 6.3E+02 0.014 22.6 11.6 40 180-220 344-384 (393)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.98 E-value=2.8e-31 Score=240.65 Aligned_cols=238 Identities=39% Similarity=0.707 Sum_probs=177.7
Q ss_pred CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCC----CCCCCccccCCCCcchhHH
Q 025732 2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELS----HSGSPRRLLLSPQLSWILG 77 (249)
Q Consensus 2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~----~~~~~~~~~~~~~~~~~~G 77 (249)
.+++|+|+++++++++.|+++.++|.++.|++|++++++|+.++..++++.....++ +.+...........+...|
T Consensus 111 ~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG 190 (358)
T PLN00411 111 SNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSSNSDWLIG 190 (358)
T ss_pred HHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCCCcccHHHH
Confidence 578999999999999645555555555559999999999999886544432110000 0000000001112234679
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhcc-CCccccccchhHHHHHHHHHHHHHHHH
Q 025732 78 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVS-EPSDWKLGLDIGLVAVLYSAVIGTGFR 156 (249)
Q Consensus 78 ~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~-~~~~~~~~~~~~~~~llylgv~~t~la 156 (249)
+++.++++++||+|++++|+..+++++....++|++.++++.+.+.++..++ +..+|....+..+..++|.+++ +.++
T Consensus 191 ~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~-t~la 269 (358)
T PLN00411 191 GALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAII-TSVY 269 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHH-HHHH
Confidence 9999999999999999999998888766688889999998888877776553 2233432223345678898875 6789
Q ss_pred HHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccccccccccccCCCCCCCcc
Q 025732 157 VGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSR 236 (249)
Q Consensus 157 ~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~~~~~~~~~~~~~~~~~ 236 (249)
|.+|+|++++.||++++++.+++|++++++|++++||++++.+++|+++|+.|+++..++++||.++++. +-+.+
T Consensus 270 y~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~~~~~-----~~~~~ 344 (358)
T PLN00411 270 YVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEKDQLL-----SFSGK 344 (358)
T ss_pred HHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhhhccc-----Ccccc
Confidence 9999999999999999999999999999999999999999999999999999999999887777655443 22356
Q ss_pred ccccccccc
Q 025732 237 EKVPLLQNR 245 (249)
Q Consensus 237 ~~~~~~~~~ 245 (249)
|+.|.+-|.
T Consensus 345 ~~~~~~~~~ 353 (358)
T PLN00411 345 EKTPLLLNG 353 (358)
T ss_pred ccchhhhhc
Confidence 778877553
No 2
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.94 E-value=3.9e-26 Score=202.57 Aligned_cols=193 Identities=21% Similarity=0.215 Sum_probs=154.9
Q ss_pred CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHH
Q 025732 2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFL 81 (249)
Q Consensus 2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~ 81 (249)
.+++|+++.+++++++|||++++ +++|++++++|+.++. . + ..+ .......|++++
T Consensus 93 ~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~-~-~-~~~---------------~~~~~~~G~~l~ 148 (299)
T PRK11453 93 LQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLI-E-D-SLN---------------GQHVAMLGFMLT 148 (299)
T ss_pred HHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhc-c-c-cCC---------------CcchhHHHHHHH
Confidence 46789999999999999999999 9999999999999884 2 1 100 111224799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhch--hHHHHHHHHHHHHHHHHHHHHHhccCC---ccccccchhHHHHHHHHHHHHHHHH
Q 025732 82 AAEAFMNSAWFILQALILRKFAA--VLIIMFYLFFFNTILSTAFALIVVSEP---SDWKLGLDIGLVAVLYSAVIGTGFR 156 (249)
Q Consensus 82 l~aa~~~a~y~v~~k~~~~~~~~--~~~~~~~~~l~g~i~l~~~al~~~~~~---~~~~~~~~~~~~~llylgv~~t~la 156 (249)
++++++|+.|.++.||..++.++ ......+++..+.+.+...+...+.+. ..+...+...|..++|+|+++|+++
T Consensus 149 l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~ 228 (299)
T PRK11453 149 LAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVG 228 (299)
T ss_pred HHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997665432 244556777777665555544433221 1111122346899999999999999
Q ss_pred HHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccc
Q 025732 157 VGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS 218 (249)
Q Consensus 157 ~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~ 218 (249)
|.+|++++++.++.+++.+.+++|+++.+++++++||++++.+++|+++|+.|+++..++++
T Consensus 229 ~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 229 YGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 99999999999999999999999999999999999999999999999999999999887665
No 3
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.93 E-value=3.9e-25 Score=195.86 Aligned_cols=192 Identities=15% Similarity=0.149 Sum_probs=144.4
Q ss_pred chhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHH
Q 025732 3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLA 82 (249)
Q Consensus 3 ~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l 82 (249)
+++|+++.+++++++|||++++ +++|++++++|++++. ..+..... ++ . .+...+...|+++.+
T Consensus 99 ~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~-~~~~~~~~----~~---~--~~~~~~~~~G~~~~l 162 (295)
T PRK11689 99 YLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVL-GGDNGLSL----AE---L--INNIASNPLSYGLAF 162 (295)
T ss_pred HHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhhee-cCCccchh----hh---h--hhccccChHHHHHHH
Confidence 5689999999999999999999 9999999999999884 21110000 00 0 000012246999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 025732 83 AEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTW 162 (249)
Q Consensus 83 ~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~ 162 (249)
+++++||.|+++.||..++++ +.... ...+++.+.+.....+....++ +...|..++|.+ ++++++|.+|++
T Consensus 163 ~aa~~~A~~~v~~k~~~~~~~-~~~~~---~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~l~~~~-~~t~~~~~l~~~ 234 (295)
T PRK11689 163 IGAFIWAAYCNVTRKYARGKN-GITLF---FILTALALWIKYFLSPQPAMVF---SLPAIIKLLLAA-AAMGFGYAAWNV 234 (295)
T ss_pred HHHHHHHHHHHHHhhccCCCC-chhHH---HHHHHHHHHHHHHHhcCccccC---CHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 999999999999999876654 34432 2333444444333322211112 124577888888 589999999999
Q ss_pred HhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccc
Q 025732 163 CLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS 218 (249)
Q Consensus 163 al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~ 218 (249)
++++.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+++..+.++
T Consensus 235 al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 235 GILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR 290 (295)
T ss_pred HHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence 99999999999999999999999999999999999999999999999988766443
No 4
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.92 E-value=1.9e-24 Score=191.21 Aligned_cols=187 Identities=14% Similarity=0.138 Sum_probs=154.5
Q ss_pred CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHH
Q 025732 2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFL 81 (249)
Q Consensus 2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~ 81 (249)
.++.|+++++++.+ +|||++++ +++|++++++|+.++. .++ .. .....|+++.
T Consensus 103 ~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~-~~~-~~------------------~~~~~G~l~~ 155 (292)
T PRK11272 103 VATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLN-SGG-NL------------------SGNPWGAILI 155 (292)
T ss_pred HHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHh-cCc-cc------------------ccchHHHHHH
Confidence 46799999999986 58999999 9999999999998873 111 10 1124699999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 025732 82 AAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCT 161 (249)
Q Consensus 82 l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~ 161 (249)
++++++||.|.+..||..++. +...+.+++.++++.+.++....+.+.. ..++...|..++|+++++|+++|.+|+
T Consensus 156 l~a~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~l~i~~s~~~~~l~~ 231 (292)
T PRK11272 156 LIASASWAFGSVWSSRLPLPV--GMMAGAAEMLAAGVVLLIASLLSGERLT--ALPTLSGFLALGYLAVFGSIIAISAYM 231 (292)
T ss_pred HHHHHHHHHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHcCCccc--ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998865432 3567789999998888877665432211 112235688999999999999999999
Q ss_pred HHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccccc
Q 025732 162 WCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSK 219 (249)
Q Consensus 162 ~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~ 219 (249)
+++++.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+++..+++++
T Consensus 232 ~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~ 289 (292)
T PRK11272 232 YLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL 289 (292)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999988775553
No 5
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.91 E-value=1.6e-23 Score=181.27 Aligned_cols=179 Identities=20% Similarity=0.282 Sum_probs=151.6
Q ss_pred CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHH
Q 025732 2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFL 81 (249)
Q Consensus 2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~ 81 (249)
.++.|+++++++.+++|||++++ +++|++++++|++++. .++ + ......|+++.
T Consensus 80 ~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~-~~~-~------------------~~~~~~G~~~~ 133 (260)
T TIGR00950 80 LYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLL-SDG-N------------------LSINPAGLLLG 133 (260)
T ss_pred HhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhc-cCC-c------------------ccccHHHHHHH
Confidence 46899999999999999999999 9999999999999884 211 0 11235799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHH
Q 025732 82 AAEAFMNSAWFILQALILRKFAA-VLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLC 160 (249)
Q Consensus 82 l~aa~~~a~y~v~~k~~~~~~~~-~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~ 160 (249)
++++++|+.|.+..|+..++.+. +...+.+++.++.+.+.++....+++. .+ +...|..+++++++++.++|.+|
T Consensus 134 l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~ 209 (260)
T TIGR00950 134 LGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIGTALAYFLW 209 (260)
T ss_pred HHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998776652 245566888999988888876544321 22 23457789999999999999999
Q ss_pred HHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHh
Q 025732 161 TWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGF 210 (249)
Q Consensus 161 ~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv 210 (249)
++++++.++.+++.+.+++|+++++++++++||++++.+++|+++++.|+
T Consensus 210 ~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 210 NKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999986
No 6
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.90 E-value=2.7e-23 Score=184.41 Aligned_cols=193 Identities=17% Similarity=0.166 Sum_probs=148.6
Q ss_pred chhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHH
Q 025732 3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLA 82 (249)
Q Consensus 3 ~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l 82 (249)
+++|+++++++.+++|||++++ +++|++++++|+.+.. ..+ ......|+++.+
T Consensus 99 ~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~---~~~------------------~~~~~~G~~~~l 151 (302)
T TIGR00817 99 AMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS---DTE------------------LSFNWAGFLSAM 151 (302)
T ss_pred hcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc---CCc------------------ccccHHHHHHHH
Confidence 5789999999999999999999 9999999999997652 111 012256999999
Q ss_pred HHHHHHHHHHHHHHHHHH--HhchhHHHHHHHHHHHHHHHHHHHHHhccCC-c--cccc-----cchhHHHHHHHHHHHH
Q 025732 83 AEAFMNSAWFILQALILR--KFAAVLIIMFYLFFFNTILSTAFALIVVSEP-S--DWKL-----GLDIGLVAVLYSAVIG 152 (249)
Q Consensus 83 ~aa~~~a~y~v~~k~~~~--~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~-~--~~~~-----~~~~~~~~llylgv~~ 152 (249)
+++++|++|+++.||..+ +++ +...+.|++..+++.++|++...+... . .+.. .....+...++.+..+
T Consensus 152 ~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (302)
T TIGR00817 152 ISNITFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGF 230 (302)
T ss_pred HHHHHHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHH
Confidence 999999999999999877 565 689999999999999999877654311 0 1100 0001121222333323
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccccccccc
Q 025732 153 TGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKT 223 (249)
Q Consensus 153 t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~~~~ 223 (249)
....+.++++++++.+|++++++.+++|++++++|++++||++++.+++|+++++.|+++..+.|+||++.
T Consensus 231 ~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~ 301 (302)
T TIGR00817 231 FHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPKP 301 (302)
T ss_pred HHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcCC
Confidence 33333466689999999999999999999999999999999999999999999999999988766555443
No 7
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.90 E-value=1.3e-22 Score=179.65 Aligned_cols=187 Identities=11% Similarity=0.057 Sum_probs=142.6
Q ss_pred chhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHH
Q 025732 3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLA 82 (249)
Q Consensus 3 ~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l 82 (249)
.++|+++++++ +||+. +..++.++++|+.++. ..+.+ .+.....|+++.+
T Consensus 105 ~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~-~~~~~-----------------~~~~~~~G~ll~l 154 (293)
T PRK10532 105 FTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLL-PLGQD-----------------VSHVDLTGAALAL 154 (293)
T ss_pred HHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheee-ecCCC-----------------cccCChHHHHHHH
Confidence 46799988775 23332 3345678899998874 21111 0112346999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 025732 83 AEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTW 162 (249)
Q Consensus 83 ~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~ 162 (249)
+++++|+.|.+..||..++++ +... .++.+++++.+.++....+. ...+ +...|..++|+|+++|+++|.+|++
T Consensus 155 ~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~-~~~~---~~~~~~~~l~lgv~~t~~~~~l~~~ 228 (293)
T PRK10532 155 GAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAG-EALW---HWSILPLGLAVAILSTALPYSLEMI 228 (293)
T ss_pred HHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccC-cccC---CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999877765 3444 56777788777777655332 1111 1234666789999999999999999
Q ss_pred HhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccccccccccc
Q 025732 163 CLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTE 225 (249)
Q Consensus 163 al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~~~~~~ 225 (249)
++++.++++++.+.+++|+++++++++++||++++.+++|+++|+.|++...+..+||.|-||
T Consensus 229 ~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~~~~ 291 (293)
T PRK10532 229 ALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPKIKE 291 (293)
T ss_pred HHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999888776665555443
No 8
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.88 E-value=4.4e-22 Score=176.46 Aligned_cols=180 Identities=16% Similarity=0.134 Sum_probs=132.9
Q ss_pred CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHH
Q 025732 2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFL 81 (249)
Q Consensus 2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~ 81 (249)
..++|+++++++++++|||++++ +++|++++++|++++. . +. ++. ..+.
T Consensus 106 ~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~-~--~~-----------------~~~-----~~~~ 154 (296)
T PRK15430 106 YFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQL-W--TF-----------------GSL-----PIIA 154 (296)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHH-H--Hc-----------------CCc-----cHHH
Confidence 35789999999999999999999 9999999999999884 2 11 001 1457
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHH
Q 025732 82 AAEAFMNSAWFILQALILRKF-AAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLC 160 (249)
Q Consensus 82 l~aa~~~a~y~v~~k~~~~~~-~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~ 160 (249)
++++++||.|++..||..++. ......+.|++.++.....+.. +.+..++...+...+..+++.|+ .+.++|.+|
T Consensus 155 l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~-~t~i~~~~~ 230 (296)
T PRK15430 155 LGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIA---DSSTSHMGQNPMSLNLLLIAAGI-VTTVPLLCF 230 (296)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHc---cCCcccccCCcHHHHHHHHHHHH-HHHHHHHHH
Confidence 889999999999988864321 1224445566666654433221 11111121111112333444454 788999999
Q ss_pred HHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732 161 TWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 216 (249)
Q Consensus 161 ~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~ 216 (249)
++++++.++++++.+.|++|+++++++++++||++++.+++|+++|+.|+.+...+
T Consensus 231 ~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 231 TAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887776544
No 9
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.86 E-value=9.8e-22 Score=172.89 Aligned_cols=182 Identities=18% Similarity=0.137 Sum_probs=137.6
Q ss_pred CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHH
Q 025732 2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFL 81 (249)
Q Consensus 2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~ 81 (249)
.++.|+++++++++++|||++.+ +++|+++++.|++++.. ++.. . ....|+.+.
T Consensus 96 ~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~---~~~~----------------~-~~~~g~~~~ 149 (281)
T TIGR03340 96 ARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGL---SRFA----------------Q-HRRKAYAWA 149 (281)
T ss_pred HhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhc---cccc----------------c-cchhHHHHH
Confidence 35789999999999999999999 99999999999998842 1100 0 123578889
Q ss_pred HHHHHHHHHHHHHHHHHHHHhch---hHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHH
Q 025732 82 AAEAFMNSAWFILQALILRKFAA---VLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVG 158 (249)
Q Consensus 82 l~aa~~~a~y~v~~k~~~~~~~~---~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~ 158 (249)
++++++|+.|+++.|+..++.++ ....+.+++..+++.+.+.....+.. .+. .....+..+++.+.+++.++|.
T Consensus 150 l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~s~l~~~ 226 (281)
T TIGR03340 150 LAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR--SMF-PYARQILPSATLGGLMIGGAYA 226 (281)
T ss_pred HHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhcc--chh-hhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876444331 12233344433323322222221211 111 1123466778999999999999
Q ss_pred HHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhh
Q 025732 159 LCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYA 212 (249)
Q Consensus 159 l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l 212 (249)
+|++++++.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+++
T Consensus 227 l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 227 LVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 999999999999999999999999999999999999999999999999999875
No 10
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.83 E-value=5.7e-20 Score=166.66 Aligned_cols=187 Identities=17% Similarity=0.214 Sum_probs=149.5
Q ss_pred CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHH
Q 025732 2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFL 81 (249)
Q Consensus 2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~ 81 (249)
.++.|+++++++++++|||++++ +++++++++.|+.+.+. .+. + ....|++++
T Consensus 147 ka~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~---~~~-----------------~-~~~~G~~~~ 199 (350)
T PTZ00343 147 KAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV---KEL-----------------H-FTWLAFWCA 199 (350)
T ss_pred HHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec---ccc-----------------h-hHHHHHHHH
Confidence 35799999999999999999999 99999999999998741 111 1 135799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc------hhHHHHHHHHHHHHHHHHHHHHHhccC--Cccccc---c-chhHHHHHHHHH
Q 025732 82 AAEAFMNSAWFILQALILRKFA------AVLIIMFYLFFFNTILSTAFALIVVSE--PSDWKL---G-LDIGLVAVLYSA 149 (249)
Q Consensus 82 l~aa~~~a~y~v~~k~~~~~~~------~~~~~~~~~~l~g~i~l~~~al~~~~~--~~~~~~---~-~~~~~~~llylg 149 (249)
++++++|+.|+++.||..++.+ ++.....+++..+++.++|+....+.. ...|.. . ....+..+++.
T Consensus 200 l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~- 278 (350)
T PTZ00343 200 MLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFK- 278 (350)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHH-
Confidence 9999999999999999876532 234566667889999999987755431 111100 0 01123445564
Q ss_pred HHHHHHHHHHHHH----HhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732 150 VIGTGFRVGLCTW----CLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 216 (249)
Q Consensus 150 v~~t~la~~l~~~----al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~ 216 (249)
++.++++|.+|++ ++++++|.+.++..++.|++++++|++++||++++.+++|+++++.|+++.+.-
T Consensus 279 i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 279 IFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 5678999999995 999999999999999999999999999999999999999999999999887654
No 11
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.82 E-value=2.5e-19 Score=160.41 Aligned_cols=200 Identities=18% Similarity=0.244 Sum_probs=156.5
Q ss_pred chhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHH
Q 025732 3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLA 82 (249)
Q Consensus 3 ~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l 82 (249)
.+.-.|+++++++++|+|.++. |++|+++++.|+++++..+. ... + .++++.+...||++++
T Consensus 113 ~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~--~~~-----~-----~~~~~~~~i~GDll~l 174 (334)
T PF06027_consen 113 CTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDV--LSG-----S-----DSSSGSNPILGDLLAL 174 (334)
T ss_pred hhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeecc--ccc-----c-----cCCCCCccchhHHHHH
Confidence 3556789999999999999999 99999999999998863321 110 0 0122345689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccC-CccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 025732 83 AEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSE-PSDWKLGLDIGLVAVLYSAVIGTGFRVGLCT 161 (249)
Q Consensus 83 ~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~-~~~~~~~~~~~~~~llylgv~~t~la~~l~~ 161 (249)
+++++||+++++.++..++.+ ......+..++|.++..+.....+.+ ....+++ ......+....++...-|.+..
T Consensus 175 ~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~--~~~~~~~v~~~~~lf~~y~l~p 251 (334)
T PF06027_consen 175 LGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESIHWT--SQVIGLLVGYALCLFLFYSLVP 251 (334)
T ss_pred HHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccCCC--hhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876 57888888889998888777666643 2222222 2222333333456778888999
Q ss_pred HHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccccccccc
Q 025732 162 WCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKT 223 (249)
Q Consensus 162 ~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~~~~ 223 (249)
..++..+|+...+-.....+++++++++++|+++++..++|.++|+.|+++....+++++++
T Consensus 252 ~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~ 313 (334)
T PF06027_consen 252 IVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEEA 313 (334)
T ss_pred HHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCccccc
Confidence 99999999999999999999999999999999999999999999999999988765544433
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.80 E-value=1.9e-18 Score=150.43 Aligned_cols=183 Identities=20% Similarity=0.311 Sum_probs=143.3
Q ss_pred CchhHHHHHHHHH-HhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcc-hhHHHH
Q 025732 2 LNLIPAFTFVLAI-IFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLS-WILGGF 79 (249)
Q Consensus 2 ~~~~Pi~~~ils~-l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~ 79 (249)
.++.|+++.+++. ++++||++++ +++|+++++.|++++.. ++.. ... ...|+.
T Consensus 103 ~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~---~~~~----------------~~~~~~~g~~ 157 (292)
T COG0697 103 IGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILL---GGGG----------------GGILSLLGLL 157 (292)
T ss_pred HHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheec---CCCc----------------chhHHHHHHH
Confidence 4688999999996 7779999999 99999999999999852 1110 011 468999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHH
Q 025732 80 FLAAEAFMNSAWFILQALILRKFAAVLIIMF-YLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVG 158 (249)
Q Consensus 80 l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~-~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~ 158 (249)
+.++++++|+.|.+..|+.. +.+ +..... +++. ...+......... .. . ......|..+.+.|+++++++|.
T Consensus 158 ~~l~a~~~~a~~~~~~~~~~-~~~-~~~~~~~~~~~--~~~~~~~~~~~~~-~~-~-~~~~~~~~~~~~~g~~~~~i~~~ 230 (292)
T COG0697 158 LALAAALLWALYTALVKRLS-RLG-PVTLALLLQLL--LALLLLLLFFLSG-FG-A-PILSRAWLLLLYLGVFSTGLAYL 230 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCC-hHHHHHHHHHH--HHHHHHHHHHhcc-cc-c-cCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998876 443 344444 4444 2222222221111 11 1 11224588899999999999999
Q ss_pred HHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732 159 LCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 216 (249)
Q Consensus 159 l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~ 216 (249)
+|++++++.++.+++.+.+++|+++.+++++++||+++..+++|+++++.|+.+...+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 231 LWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999988876
No 13
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.74 E-value=8.8e-18 Score=148.89 Aligned_cols=198 Identities=24% Similarity=0.290 Sum_probs=156.6
Q ss_pred CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHH
Q 025732 2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFL 81 (249)
Q Consensus 2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~ 81 (249)
.++.-+||.+++.++..||+++. |++++++++.|+++++..+ +-+. ++....+...|+++.
T Consensus 192 SStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~--s~~~-----------~~~~a~~~llG~lla 252 (416)
T KOG2765|consen 192 SSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGD--SKQN-----------SDLPASRPLLGNLLA 252 (416)
T ss_pred hhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEecc--cccc-----------ccCCccchhHHHHHH
Confidence 35678999999999999999999 9999999999999996432 1111 112233458999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHH---HHHHHHHHHHHHHHHHhcc-CCccccccchhHHHHHHHHHHHHHHHHH
Q 025732 82 AAEAFMNSAWFILQALILRKFAAVLIIMF---YLFFFNTILSTAFALIVVS-EPSDWKLGLDIGLVAVLYSAVIGTGFRV 157 (249)
Q Consensus 82 l~aa~~~a~y~v~~k~~~~~~~~~~~~~~---~~~l~g~i~l~~~al~~~~-~~~~~~~~~~~~~~~llylgv~~t~la~ 157 (249)
+++|+.||+|+++.||...+.+....+.. +..++..++++|..++.+. ..+.++.+...+...++..+.++|+++-
T Consensus 253 L~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSD 332 (416)
T KOG2765|consen 253 LLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSD 332 (416)
T ss_pred HHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHH
Confidence 99999999999999997766531233322 3333445555554444332 2345666666677888899999999999
Q ss_pred HHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccc
Q 025732 158 GLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS 218 (249)
Q Consensus 158 ~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~ 218 (249)
++|.|+.-..+|..+++-..++.+.|++.+.++-|.++++.+++|.+.|++|.++++...+
T Consensus 333 ylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 333 YLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred HHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 9999999999999999999999999999999999999999999999999999999887544
No 14
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.66 E-value=6.2e-16 Score=134.09 Aligned_cols=150 Identities=11% Similarity=0.085 Sum_probs=107.1
Q ss_pred CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHH
Q 025732 2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFL 81 (249)
Q Consensus 2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~ 81 (249)
+.++|+|+++++++++|||++++ +++|+++++.|++++...++ +. ..+.
T Consensus 103 ~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~~--------------------~~-----~~~~ 151 (256)
T TIGR00688 103 YLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLKG--------------------SL-----PWEA 151 (256)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHcC--------------------Cc-----hHHH
Confidence 46799999999999999999999 99999999999988742100 01 1357
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH---HhccCCccccccchhHHHHHHHHHHHHHHHHHH
Q 025732 82 AAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFAL---IVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVG 158 (249)
Q Consensus 82 l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al---~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~ 158 (249)
++++++|+.|.+..||..++ +. .... .+.+.+.++.. .....+..........|..+++.|++ |.++|.
T Consensus 152 l~aa~~~a~~~i~~~~~~~~-~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-t~i~~~ 223 (256)
T TIGR00688 152 LVLAFSFTAYGLIRKALKNT-DL-AGFC-----LETLSLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLI-TGTPLL 223 (256)
T ss_pred HHHHHHHHHHHHHHhhcCCC-Cc-chHH-----HHHHHHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHH-HHHHHH
Confidence 88999999999998886432 21 2211 11122222221 11111111111122368888888876 899999
Q ss_pred HHHHHhccCCccchhhhhhHHHHHHHHHHHHH
Q 025732 159 LCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVI 190 (249)
Q Consensus 159 l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~ 190 (249)
+|++++++.++++++.+.|++|+++++++++.
T Consensus 224 l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 224 AFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999864
No 15
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.64 E-value=1.6e-15 Score=134.24 Aligned_cols=182 Identities=12% Similarity=0.120 Sum_probs=135.7
Q ss_pred hhHHHHHHHHHHhcccccccccccCCce----eeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHH
Q 025732 4 LIPAFTFVLAIIFRLEKLNWENKSSQAK----SLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGF 79 (249)
Q Consensus 4 ~~Pi~~~ils~l~~~e~~~~~~~~~~~~----~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 79 (249)
+.|++.++.+.+++|||.+++ + ++|+++.++|++++...++++ ... +...+...|.+
T Consensus 95 ~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~~~~~------------~~~-~~~~~~~~Gi~ 155 (290)
T TIGR00776 95 FQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRSKDKS------------AGI-KSEFNFKKGIL 155 (290)
T ss_pred HHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEeccccc------------ccc-ccccchhhHHH
Confidence 677888999999999999988 8 999999999988874211100 000 00022357999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHH---HHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHH
Q 025732 80 FLAAEAFMNSAWFILQALILRKFAAVLIIMFYLF---FFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFR 156 (249)
Q Consensus 80 l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~---l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la 156 (249)
+.++++++|+.|.+..|+. +++ +.+.++++. +++++...+.. ... .++. ....|..++ .|++ ++++
T Consensus 156 ~~l~sg~~y~~~~~~~~~~--~~~-~~~~~~~~~~g~~~~~~~~~~~~--~~~--~~~~--~~~~~~~~~-~Gi~-~~ia 224 (290)
T TIGR00776 156 LLLMSTIGYLVYVVVAKAF--GVD-GLSVLLPQAIGMVIGGIIFNLGH--ILA--KPLK--KYAILLNIL-PGLM-WGIG 224 (290)
T ss_pred HHHHHHHHHHHHHHHHHHc--CCC-cceehhHHHHHHHHHHHHHHHHH--hcc--cchH--HHHHHHHHH-HHHH-HHHH
Confidence 9999999999999998865 354 577744443 44444333221 111 1221 122344554 8887 7999
Q ss_pred HHHHHHHhc-cCCccchhhhhhHHHHHHHHHHHHHhCCccchhhH----HHHHHHHHHhhhhcc
Q 025732 157 VGLCTWCLS-RTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSL----IGAMIIVAGFYAVMW 215 (249)
Q Consensus 157 ~~l~~~al~-~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~----iG~~LIi~gv~l~~~ 215 (249)
|.+|..+.+ +.+++.++.+.+++|+.+.+++++++||+.++.++ +|.++|+.|+.+...
T Consensus 225 ~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 225 NFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 999999999 99999999999999999999999999999999999 999999999887654
No 16
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.62 E-value=9.5e-17 Score=136.76 Aligned_cols=199 Identities=18% Similarity=0.164 Sum_probs=147.7
Q ss_pred CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHH
Q 025732 2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFL 81 (249)
Q Consensus 2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~ 81 (249)
+.++|++|.++++.++|||.++. ..+|..+.+.|+++++ +.+.+.. ++++..+++.-+....|....
T Consensus 130 tFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIv--RPpFlFG-----~~t~g~~~s~~~~~~~gt~aa 196 (346)
T KOG4510|consen 130 TFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIV--RPPFLFG-----DTTEGEDSSQVEYDIPGTVAA 196 (346)
T ss_pred EecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEe--cCCcccC-----CCccccccccccccCCchHHH
Confidence 45789999999999999999999 9999999999999985 4443322 122211111223346788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 025732 82 AAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCT 161 (249)
Q Consensus 82 l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~ 161 (249)
+.+++..|...++.|++.|+.+. +....+..+.+.+..++.....+. -+|+. ...+|+.++.+|+++ .++..+..
T Consensus 197 i~s~lf~asvyIilR~iGk~~h~-~msvsyf~~i~lV~s~I~~~~ig~--~~lP~-cgkdr~l~~~lGvfg-figQIllT 271 (346)
T KOG4510|consen 197 ISSVLFGASVYIILRYIGKNAHA-IMSVSYFSLITLVVSLIGCASIGA--VQLPH-CGKDRWLFVNLGVFG-FIGQILLT 271 (346)
T ss_pred HHhHhhhhhHHHHHHHhhccccE-EEEehHHHHHHHHHHHHHHhhccc--eecCc-cccceEEEEEehhhh-hHHHHHHH
Confidence 89999988888888998888653 444455555565555554433221 12221 123567777889865 66778899
Q ss_pred HHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccc
Q 025732 162 WCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS 218 (249)
Q Consensus 162 ~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~ 218 (249)
.++++-.+..+++..+.+-++|.++.++++||.++++.++|+++|+.+...+...|.
T Consensus 272 m~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kw 328 (346)
T KOG4510|consen 272 MGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKW 328 (346)
T ss_pred HHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998766554443
No 17
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.62 E-value=4e-15 Score=113.81 Aligned_cols=125 Identities=22% Similarity=0.367 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025732 86 FMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLS 165 (249)
Q Consensus 86 ~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~al~ 165 (249)
++||.+.+..|+..++.+ +...+.++++.+++ ++++....+... +...+...+..+++.+++++.+++.+|+++++
T Consensus 1 ~~~a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 76 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK 76 (126)
T ss_pred ceeeeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence 478999999999988876 69999999999998 666655544322 11122345777888999989999999999999
Q ss_pred cCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhc
Q 025732 166 RTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM 214 (249)
Q Consensus 166 ~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~ 214 (249)
+.++++++.+.+++|+++.++++++++|++++.+++|.++++.|+++..
T Consensus 77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988764
No 18
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.55 E-value=1.5e-13 Score=122.22 Aligned_cols=200 Identities=17% Similarity=0.231 Sum_probs=153.6
Q ss_pred chhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHH
Q 025732 3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLA 82 (249)
Q Consensus 3 ~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l 82 (249)
++.|+++++++.+++|+|.+.+ |++++++-.+|+++....+..+-+ . ......+...|+++++
T Consensus 98 s~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~-----~------~~~~~~~~~~G~~ll~ 160 (303)
T PF08449_consen 98 SSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSS-----S------SNSSSFSSALGIILLL 160 (303)
T ss_pred hhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeeccccccc-----c------cccccccchhHHHHHH
Confidence 4679999999999999999999 999999999999988643211100 0 0001112234999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHHHHHH--hccCCcccc--ccchhHHHHHHHHHHHHHHHHH
Q 025732 83 AEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALI--VVSEPSDWK--LGLDIGLVAVLYSAVIGTGFRV 157 (249)
Q Consensus 83 ~aa~~~a~y~v~~k~~~~~~~-~~~~~~~~~~l~g~i~l~~~al~--~~~~~~~~~--~~~~~~~~~llylgv~~t~la~ 157 (249)
++.++.+...+.++|..++++ ++.+..++..+++.+..++.... .++..+.++ ...+..+..++... ++..++.
T Consensus 161 ~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s-~~~~~g~ 239 (303)
T PF08449_consen 161 LSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFS-LTGALGQ 239 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHH-HHHHHHH
Confidence 999999999999999987765 45788999999998888877666 332111111 11223345555554 4566667
Q ss_pred HHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccccc
Q 025732 158 GLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKE 220 (249)
Q Consensus 158 ~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~ 220 (249)
...++..++.||...++...+--+++++++++++|+++++.+++|.++++.|..+....|+|+
T Consensus 240 ~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 240 FFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 777889999999999999999999999999999999999999999999999999988877654
No 19
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.55 E-value=1e-13 Score=105.99 Aligned_cols=134 Identities=14% Similarity=0.115 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHH
Q 025732 78 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV 157 (249)
Q Consensus 78 ~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~ 157 (249)
.++.++++++|++..++.|--.++.+ |..-+....+...+.++.+.+..++. +.-..-+...|..+...| ++++++.
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~-~~~~~~~~k~~lflilSG-la~glsw 81 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNW-QAGGEIGPKSWLFLILSG-LAGGLSW 81 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCce-ecccccCcceehhhhHHH-HHHHHHH
Confidence 57889999999999999877677665 57778888888877777776665531 111111345688888888 6899999
Q ss_pred HHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhc
Q 025732 158 GLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM 214 (249)
Q Consensus 158 ~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~ 214 (249)
.+|++++++..++++....-+.|+++++++++++||+++..+++|++||..|.+++.
T Consensus 82 l~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 82 LLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 999999999999999999999999999999999999999999999999999987654
No 20
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.53 E-value=1e-13 Score=117.48 Aligned_cols=166 Identities=11% Similarity=0.037 Sum_probs=131.8
Q ss_pred eeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Q 025732 31 KSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMF 110 (249)
Q Consensus 31 ~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~ 110 (249)
..+-+.+++.|+.++. ..+++ .......|..+.+.+..||+.|.+..+|..+..+ ...-+.
T Consensus 121 d~vwvaLAvlGi~lL~-p~~~~-----------------~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a 181 (292)
T COG5006 121 DFVWVALAVLGIWLLL-PLGQS-----------------VWSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVA 181 (292)
T ss_pred hHHHHHHHHHHHHhhe-eccCC-----------------cCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHH
Confidence 6667788889988873 22221 1122368999999999999999999999875444 478889
Q ss_pred HHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHH
Q 025732 111 YLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVI 190 (249)
Q Consensus 111 ~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~ 190 (249)
..+++++++.+|+...... +.-+ .+.-...-+-.++++|.+.|.+=..++++.+....+....++|.++.+.|+++
T Consensus 182 ~gm~vAaviv~Pig~~~ag-~~l~---~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~ 257 (292)
T COG5006 182 VGMLVAALIVLPIGAAQAG-PALF---SPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIF 257 (292)
T ss_pred HHHHHHHHHHhhhhhhhcc-hhhc---ChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999998775332 1111 11234556678999999999999999999999999999999999999999999
Q ss_pred hCCccchhhHHHHHHHHHHhhhhcccccc
Q 025732 191 VGDAFCLGSLIGAMIIVAGFYAVMWGKSK 219 (249)
Q Consensus 191 lgE~~~~~~~iG~~LIi~gv~l~~~~~~~ 219 (249)
+||++++.|++|.++|+.+..=..+..+|
T Consensus 258 L~e~ls~~qwlaI~~ViaAsaG~~lt~~~ 286 (292)
T COG5006 258 LGETLTLIQWLAIAAVIAASAGSTLTARK 286 (292)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence 99999999999999999987655554333
No 21
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.46 E-value=1.3e-12 Score=113.06 Aligned_cols=182 Identities=14% Similarity=0.132 Sum_probs=133.4
Q ss_pred chhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHH
Q 025732 3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLA 82 (249)
Q Consensus 3 ~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l 82 (249)
...|++..+++.+++|||+++- |+++++++.+|+....+..|. . -...+
T Consensus 106 ~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~~g~--------------------l-----pwval 154 (293)
T COG2962 106 FINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWLLGS--------------------L-----PWVAL 154 (293)
T ss_pred HHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHcCC--------------------C-----cHHHH
Confidence 3679999999999999999999 999999999999988643221 1 13445
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 025732 83 AEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTW 162 (249)
Q Consensus 83 ~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~ 162 (249)
.=+++|+.|..+-|+ . +.++ .+-...-++.-....+.+.+..+...+.........+..++..|+ .|++...+|..
T Consensus 155 ~la~sf~~Ygl~RK~-~-~v~a-~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~-vTavpL~lf~~ 230 (293)
T COG2962 155 ALALSFGLYGLLRKK-L-KVDA-LTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGL-VTAVPLLLFAA 230 (293)
T ss_pred HHHHHHHHHHHHHHh-c-CCch-HHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhH-HHHHHHHHHHH
Confidence 568899999877443 3 2332 333333333333333333333332221011112234667777786 69999999999
Q ss_pred HhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccccc
Q 025732 163 CLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSK 219 (249)
Q Consensus 163 al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~ 219 (249)
+-++.+-+..+...|++|..-.+++++++||+++..+++..++|-.|+++..++.-+
T Consensus 231 aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~ 287 (293)
T COG2962 231 AAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLY 287 (293)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998876543
No 22
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.26 E-value=1.9e-10 Score=102.02 Aligned_cols=139 Identities=15% Similarity=0.150 Sum_probs=110.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCcccc--ccchhHHHHHHHHHH
Q 025732 73 SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK--LGLDIGLVAVLYSAV 150 (249)
Q Consensus 73 ~~~~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~--~~~~~~~~~llylgv 150 (249)
+...|.++.++++++|+...+..|.. .+.+ |..+.+++++++.+.++++..... +..+.. ......+ .....+.
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~ 80 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICR-QWSYLKTLIQTPQKI-FMLAVSA 80 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHcCHHHH-HHHHHHH
Confidence 34689999999999999999998764 5665 699999999999887776654322 111110 0011122 2334666
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcc
Q 025732 151 IGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW 215 (249)
Q Consensus 151 ~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~ 215 (249)
++.++.+.++++++++.+++.+++..++.|++..++++++++|+++..+++|.++.+.|+.+...
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999999999999999999999999999999999999999887653
No 23
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.24 E-value=1.6e-11 Score=104.44 Aligned_cols=185 Identities=16% Similarity=0.174 Sum_probs=137.6
Q ss_pred HHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHHHHHH
Q 025732 8 FTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFM 87 (249)
Q Consensus 8 ~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~ 87 (249)
.+.+++++++|.|-++. |+.|+++|.+|++++++.+ . |.+ +.+++.+..+||++.++++.+
T Consensus 117 ~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~sD---V-----~ag-----d~aggsnp~~GD~lvi~GATl 177 (336)
T KOG2766|consen 117 CVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVVFSD---V-----HAG-----DRAGGSNPVKGDFLVIAGATL 177 (336)
T ss_pred HHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEEEee---e-----ccc-----cccCCCCCccCcEEEEeccee
Confidence 35788999999988888 9999999999999997432 1 111 112344567999999999999
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHH-HHHHHHHHHHHHHHHhcc
Q 025732 88 NSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYS-AVIGTGFRVGLCTWCLSR 166 (249)
Q Consensus 88 ~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llyl-gv~~t~la~~l~~~al~~ 166 (249)
||+.++....+.|+.+ ..+++....++|+++..+-.+...++... ..++ |-...|+ ...+..+-|.+.-..+|.
T Consensus 178 YaVSNv~EEflvkn~d-~~elm~~lgLfGaIIsaIQ~i~~~~~~~t--l~w~--~~i~~yl~f~L~MFllYsl~pil~k~ 252 (336)
T KOG2766|consen 178 YAVSNVSEEFLVKNAD-RVELMGFLGLFGAIISAIQFIFERHHVST--LHWD--SAIFLYLRFALTMFLLYSLAPILIKT 252 (336)
T ss_pred eeeccccHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHhhhccceee--Eeeh--HHHHHHHHHHHHHHHHHHhhHHheec
Confidence 9999999999999986 47888889999998887763332222222 1221 2222222 344555666777777888
Q ss_pred CCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccc
Q 025732 167 TGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS 218 (249)
Q Consensus 167 ~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~ 218 (249)
.|++...+-....-.+++++ ..+|-+.+|...+..+.++.|+++...+.+
T Consensus 253 ~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~ 302 (336)
T KOG2766|consen 253 NSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREK 302 (336)
T ss_pred CCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecccc
Confidence 89988888888888999998 556888999999999999999888754433
No 24
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.19 E-value=8.5e-11 Score=104.56 Aligned_cols=189 Identities=17% Similarity=0.212 Sum_probs=151.1
Q ss_pred chhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHH
Q 025732 3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLA 82 (249)
Q Consensus 3 ~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l 82 (249)
.++|+++.+++.++.+|+.+.+ .++.++.-..|+.+-+. ++. + -...|.+.+.
T Consensus 117 a~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~---~e~-----------------~-fn~~G~i~a~ 169 (316)
T KOG1441|consen 117 ALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASV---TEL-----------------S-FNLFGFISAM 169 (316)
T ss_pred hhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeee---ccc-----------------c-ccHHHHHHHH
Confidence 4789999999999999999999 99999999999987642 111 1 2368999999
Q ss_pred HHHHHHHHHHHHHHHHHH--Hhc-hhHHHHHHHHHHHHHHHH-HHHHHhccCCc------cccccchhHHHHHHHHHHHH
Q 025732 83 AEAFMNSAWFILQALILR--KFA-AVLIIMFYLFFFNTILST-AFALIVVSEPS------DWKLGLDIGLVAVLYSAVIG 152 (249)
Q Consensus 83 ~aa~~~a~y~v~~k~~~~--~~~-~~~~~~~~~~l~g~i~l~-~~al~~~~~~~------~~~~~~~~~~~~llylgv~~ 152 (249)
.+.+..+...++.++..+ +.. +++.+..++.-.+.+.++ |+....+++.. +|.. .....++.. ++
T Consensus 170 ~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s-v~ 244 (316)
T KOG1441|consen 170 ISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFV----TFLILLLNS-VL 244 (316)
T ss_pred HHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccch----hhHHHHHHH-HH
Confidence 999999999999999874 221 358888888888888888 77666554322 2322 234444444 44
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccccccccc
Q 025732 153 TGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKT 223 (249)
Q Consensus 153 t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~~~~ 223 (249)
...-....++.+.+++|..-++...+-=++.+..++++++|++++.+..|.++-+.|+++..+.|++++++
T Consensus 245 ~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 245 AFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred HHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 55556778889999999999999999999999999999999999999999999999999999887766654
No 25
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.19 E-value=8e-10 Score=97.20 Aligned_cols=134 Identities=11% Similarity=0.161 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHH
Q 025732 78 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV 157 (249)
Q Consensus 78 ~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~ 157 (249)
.++.++++++||.+.+..||..++.+ ....+.+..+++.++++...... ...|+... ..+...+..+.++....+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~ 77 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEP---DFLWWALLAHSVLLTPYGLWYLA-QVGWSRLP-ATFWLLLAISAVANMVYF 77 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchh---HHHHHHHHHHHHHHHHHHHHhcc-cCCCCCcc-hhhHHHHHHHHHHHHHHH
Confidence 46788999999999999997665532 23455566666677676554211 12233222 223333444556778889
Q ss_pred HHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732 158 GLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 216 (249)
Q Consensus 158 ~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~ 216 (249)
.++++++++.+++.++.+.+..|+++.+++++++||++++.+++|.++++.|+.+...+
T Consensus 78 ~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 78 LGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999877653
No 26
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.18 E-value=7e-10 Score=96.13 Aligned_cols=136 Identities=13% Similarity=0.144 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCC---cccccc-chhHHHHHHHHHHH
Q 025732 76 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEP---SDWKLG-LDIGLVAVLYSAVI 151 (249)
Q Consensus 76 ~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~---~~~~~~-~~~~~~~llylgv~ 151 (249)
.|.++.++++++|+...++.|. ..+.+ +.++.++.++++++.+++......+.. ..++.. ....+..+...|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 4788999999999999999887 45565 699999999999988776654432110 011111 11123445556654
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhc
Q 025732 152 GTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM 214 (249)
Q Consensus 152 ~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~ 214 (249)
.++.+.+++++++++++..+++..++.|++..++++++++|+++..+++|.++.+.|+.+..
T Consensus 80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999988664
No 27
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.18 E-value=8.9e-10 Score=86.15 Aligned_cols=123 Identities=13% Similarity=0.146 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHH
Q 025732 76 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGF 155 (249)
Q Consensus 76 ~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~l 155 (249)
.|.++.+.+.++-+...++.|+-.++.++ ...... . + ...... . + ....+++|+++.++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~-~~~~~~-~----~-~~~~~~--~-~-----------p~~~i~lgl~~~~l 60 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPL-LSHAWD-F----I-AALLAF--G-L-----------ALRAVLLGLAGYAL 60 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccchhH-H----H-HHHHHH--h-c-----------cHHHHHHHHHHHHH
Confidence 36778888888888899999987777543 221111 0 0 000000 0 1 11245889999999
Q ss_pred HHHHHHHHhccCCccchhhhhhHHHHHHHHHHHH--HhCCccchhhHHHHHHHHHHhhhhcccccc
Q 025732 156 RVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVV--IVGDAFCLGSLIGAMIIVAGFYAVMWGKSK 219 (249)
Q Consensus 156 a~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l--~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~ 219 (249)
+|.+|.+++++.+++.+..+..+.++...+.++. ++||++++.+++|.++|++|++++..+++|
T Consensus 61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999888888885 899999999999999999999998765443
No 28
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.11 E-value=3.6e-09 Score=84.24 Aligned_cols=137 Identities=15% Similarity=0.218 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh------chhHHHHHHHHHHHHHHHHHHHHHhccCC-cc-c-ccc------chhH
Q 025732 77 GGFFLAAEAFMNSAWFILQALILRKF------AAVLIIMFYLFFFNTILSTAFALIVVSEP-SD-W-KLG------LDIG 141 (249)
Q Consensus 77 G~~l~l~aa~~~a~y~v~~k~~~~~~------~~~~~~~~~~~l~g~i~l~~~al~~~~~~-~~-~-~~~------~~~~ 141 (249)
|.++++.+.++.+++.++.|+..++. -++.....+....+.+.+++.++..|... .. + ... ....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 67899999999999999999987662 25788999999999999999988876532 11 1 010 1234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhc
Q 025732 142 LVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM 214 (249)
Q Consensus 142 ~~~llylgv~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~ 214 (249)
+..++..|++ ..+-....++.+++++|...++...+--+...+++++++||++++.+++|.++.+.|+++.+
T Consensus 81 ~~~~~~~~~~-~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 81 IFLLILSGLL-AFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 5566666654 45667888889999999999999999999999999999999999999999999999987654
No 29
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=98.99 E-value=9.6e-09 Score=88.84 Aligned_cols=191 Identities=17% Similarity=0.208 Sum_probs=127.4
Q ss_pred hhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHH
Q 025732 4 LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAA 83 (249)
Q Consensus 4 ~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~ 83 (249)
+-.++|++++.+++|+|++.+ ||.++++-++|+.++... + .... +.+++.+........+...|.++.+.
T Consensus 52 ~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~lv~~~--~-~~~~-~~~~~~~~~~~~~~~~~~~G~~~vl~ 121 (244)
T PF04142_consen 52 SKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVLVQLS--S-SQSS-DNSSSSSVHHDASNQNPLLGLLAVLA 121 (244)
T ss_pred hHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHheeecC--C-cccc-ccccccccccccccchhHhHHHHHHH
Confidence 456889999999999999999 999999999999987421 1 1100 00000000011123345789999999
Q ss_pred HHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHHHHHHhccC-CccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 025732 84 EAFMNSAWFILQALILRKFAA-VLIIMFYLFFFNTILSTAFALIVVSE-PSDWKLGLDIGLVAVLYSAVIGTGFRVGLCT 161 (249)
Q Consensus 84 aa~~~a~y~v~~k~~~~~~~~-~~~~~~~~~l~g~i~l~~~al~~~~~-~~~~~~~~~~~~~~llylgv~~t~la~~l~~ 161 (249)
++++=++..++.+|..|+.+. ....+.+..++|.++.++.....+.+ ..+-.+ -..|-...+.-++...++=.+..
T Consensus 122 ~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~--f~G~~~~~~~~i~~~a~gGllva 199 (244)
T PF04142_consen 122 AAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGF--FHGYSWWVWIVIFLQAIGGLLVA 199 (244)
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCc--hhhcchHHHHHHHHHHHhhHHHH
Confidence 999999999999998887542 34455555666666665554333221 111111 01111122333344444446677
Q ss_pred HHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHH
Q 025732 162 WCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMII 206 (249)
Q Consensus 162 ~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LI 206 (249)
..+|+.+...=+....+.-+++.+.+++++|.+++....+|..++
T Consensus 200 ~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 200 FVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 788899988888888899999999999999999999999998753
No 30
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.97 E-value=2e-08 Score=91.53 Aligned_cols=139 Identities=9% Similarity=0.070 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHH
Q 025732 76 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGF 155 (249)
Q Consensus 76 ~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~l 155 (249)
.-.+.+++.-++|+.+.++.|...+..-++....++.+.++++++++++...+++. .++......|..+..+|+++ .+
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~-~~~~~~~~~~~~l~l~g~~g-~~ 90 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSR-SLPPLSVSILSKIGLLGFLG-SM 90 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhc-ccCcchHHHHHHHHHHHHHH-HH
Confidence 34667788899999999999998876445789999999999999998877654211 11111123456666678777 56
Q ss_pred HHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHH------hCCccchhhHHHHHHHHHHhhhhccc
Q 025732 156 RVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVI------VGDAFCLGSLIGAMIIVAGFYAVMWG 216 (249)
Q Consensus 156 a~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~------lgE~~~~~~~iG~~LIi~gv~l~~~~ 216 (249)
.+.+++++++.++++.++++.++.|++..++++++ ++|++++.+++|.++-+.|+.+....
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~ 157 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY 157 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence 67789999999999999999999999999999999 69999999999999999998876643
No 31
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.97 E-value=3.4e-09 Score=89.46 Aligned_cols=192 Identities=16% Similarity=0.214 Sum_probs=143.7
Q ss_pred hhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHH
Q 025732 4 LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAA 83 (249)
Q Consensus 4 ~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~ 83 (249)
+-|+=+++++.++.+++..++ +...++..++|+.+. .++.+.... ..+.....|.++.++
T Consensus 120 cKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValF-mYK~~Kv~g-------------~e~~t~g~GElLL~l 179 (337)
T KOG1580|consen 120 CKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALF-MYKENKVGG-------------AEDKTFGFGELLLIL 179 (337)
T ss_pred CCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHh-hccccccCC-------------CcccccchHHHHHHH
Confidence 457788899999999888888 999999999999988 455332211 112335679999988
Q ss_pred HHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHHHHHHhccCCc--cccccchhHHHHHHHHHHHHHHHHHHHH
Q 025732 84 EAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPS--DWKLGLDIGLVAVLYSAVIGTGFRVGLC 160 (249)
Q Consensus 84 aa~~~a~y~v~~k~~~~~~~-~~~~~~~~~~l~g~i~l~~~al~~~~~~~--~~~~~~~~~~~~llylgv~~t~la~~l~ 160 (249)
+-..=+.-...+.|....+. .....+.+..+.+.+.+..-.++.++-.+ -+....+..|+.+..+++ ++.++..+.
T Consensus 180 SL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai-~s~LGQ~fI 258 (337)
T KOG1580|consen 180 SLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAI-ASCLGQWFI 258 (337)
T ss_pred HHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHH-HHHhhhHHH
Confidence 87777777777877765543 23566777777777655443333332111 111122345777777775 889999999
Q ss_pred HHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732 161 TWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 216 (249)
Q Consensus 161 ~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~ 216 (249)
+.-+..-||-.-|+....--.+.++.++++++.+++..||+|.++++.++..=...
T Consensus 259 F~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~ 314 (337)
T KOG1580|consen 259 FKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVD 314 (337)
T ss_pred HHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhc
Confidence 99999999999999999999999999999999999999999999999998765543
No 32
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.94 E-value=9.4e-09 Score=78.37 Aligned_cols=108 Identities=13% Similarity=0.260 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHH
Q 025732 111 YLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVI 190 (249)
Q Consensus 111 ~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~ 190 (249)
+.+.++.+.+..+.....+..+.+.......+...+..|+++...++.+|++++++.++ .++....+.|+++.++++++
T Consensus 3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~ 81 (113)
T PF13536_consen 3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLF 81 (113)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHH
Confidence 44555655555554442221111111111234455566777777899999999999995 88899999999999999999
Q ss_pred hCCccchhhHHHHHHHHHHhhhhcccccc
Q 025732 191 VGDAFCLGSLIGAMIIVAGFYAVMWGKSK 219 (249)
Q Consensus 191 lgE~~~~~~~iG~~LIi~gv~l~~~~~~~ 219 (249)
++|++++.+++|.++++.|+.++.+++.+
T Consensus 82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 82 FKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999887654
No 33
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.91 E-value=2.7e-08 Score=85.91 Aligned_cols=120 Identities=13% Similarity=0.068 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 025732 88 NSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRT 167 (249)
Q Consensus 88 ~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~al~~~ 167 (249)
|+...+..|...++..++.....+.++.+.+.+.++.... . ....+...+..|.++..+.+.++++++++.
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~---~------~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~ 71 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR---P------PLKRLLRLLLLGALQIGVFYVLYFVAVKRL 71 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc---c------CHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444556666555544568888888888887776654321 1 123455566677788889999999999999
Q ss_pred CccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732 168 GPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 216 (249)
Q Consensus 168 g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~ 216 (249)
+++.+++...++|++..++++++++|++++.+++|..+.+.|+.+...+
T Consensus 72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~ 120 (260)
T TIGR00950 72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSD 120 (260)
T ss_pred ChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccC
Confidence 9999999999999999999999999999999999999999998887643
No 34
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.89 E-value=8.5e-08 Score=84.84 Aligned_cols=132 Identities=14% Similarity=0.060 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHH
Q 025732 78 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV 157 (249)
Q Consensus 78 ~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~ 157 (249)
.+..+.-.+.|+...+..|...++.+ |..++++.+.++++.++++........ .....|......|++...+.+
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~ 83 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVESWP-PLMMAGVRFLIAGILLLAFLLLRGHPL-----PTLRQWLNAALIGLLLLAVGN 83 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHHhCCCC-----CcHHHHHHHHHHHHHHHHHHH
Confidence 45577789999999999998777665 799999999999999887755422111 112346566677877777788
Q ss_pred HHHHHHh-ccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732 158 GLCTWCL-SRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 216 (249)
Q Consensus 158 ~l~~~al-~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~ 216 (249)
.+++++. ++.++..+++..++.|++..+++++ +||+++..+++|.++.+.|+++...+
T Consensus 84 ~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~ 142 (292)
T PRK11272 84 GMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSG 142 (292)
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcC
Confidence 8899998 9999999999999999999999986 69999999999999999999887654
No 35
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.85 E-value=1.2e-07 Score=84.22 Aligned_cols=126 Identities=12% Similarity=0.097 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHH
Q 025732 79 FFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVG 158 (249)
Q Consensus 79 ~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~ 158 (249)
++.++++++|+...+..|...++.+ |..++++.+.++++.++++.. .+. . .+..++..|+......+.
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~~~l~~~~~--~~~-~--------~~~~~~~~g~~~~~~~~~ 74 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLHNMP-PLMLAGLRFMLVAFPAIFFVA--RPK-V--------PLNLLLGYGLTISFGQFA 74 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHhc--CCC-C--------chHHHHHHHHHHHHHHHH
Confidence 5678999999999999998887775 799999999998766554321 111 1 122233345544555666
Q ss_pred HHHHHhcc-CCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732 159 LCTWCLSR-TGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 216 (249)
Q Consensus 159 l~~~al~~-~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~ 216 (249)
+++.+.++ .++..++++.++.|++..++++++++|+++..+++|.++.+.|+.+...+
T Consensus 75 ~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~ 133 (299)
T PRK11453 75 FLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIED 133 (299)
T ss_pred HHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccc
Confidence 77788887 57789999999999999999999999999999999999999998877643
No 36
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.80 E-value=3e-07 Score=82.07 Aligned_cols=194 Identities=15% Similarity=0.165 Sum_probs=132.5
Q ss_pred HHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHHHH
Q 025732 6 PAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEA 85 (249)
Q Consensus 6 Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa 85 (249)
-+.|++++.+++++|++++ ||.++++-+.|+.++-.... .+ +++.......+...|....+.++
T Consensus 129 I~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~---~~-------~~a~~~~~~~n~~~G~~avl~~c 192 (345)
T KOG2234|consen 129 ILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSL---SP-------TGAKSESSAQNPFLGLVAVLVAC 192 (345)
T ss_pred HHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCC---CC-------CCccCCCcccchhhhHHHHHHHH
Confidence 4567899999999999999 99999999999998842111 11 11111223445678998888888
Q ss_pred HHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHHHHHHhccCCcccc--c-c-chhHHHHHHHHHHHHHHHHHHHH
Q 025732 86 FMNSAWFILQALILRKFAA-VLIIMFYLFFFNTILSTAFALIVVSEPSDWK--L-G-LDIGLVAVLYSAVIGTGFRVGLC 160 (249)
Q Consensus 86 ~~~a~y~v~~k~~~~~~~~-~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~--~-~-~~~~~~~llylgv~~t~la~~l~ 160 (249)
+.=++-.++..|..|+-.. .+.-+.-..++|.++.+...+..+.....|. + . +...|..++..+ ++=.+-
T Consensus 193 ~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~~a-----~gGLlv 267 (345)
T KOG2234|consen 193 FLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLLNA-----VGGLLV 267 (345)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHHHh-----ccchhH
Confidence 8888888888888876432 2444455556666666555544442211121 0 1 112344444343 333555
Q ss_pred HHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccccc
Q 025732 161 TWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKE 220 (249)
Q Consensus 161 ~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~ 220 (249)
...+|+.+-..=+....+..++..+.++.++|-+++...++|..+++.++.+....++++
T Consensus 268 s~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 268 SLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 566777776666677778889999999999999999999999999999999998666654
No 37
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.76 E-value=3.8e-07 Score=80.84 Aligned_cols=131 Identities=14% Similarity=0.020 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHH
Q 025732 76 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGF 155 (249)
Q Consensus 76 ~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~l 155 (249)
.+.++.++++++|+...+..|...++.+ |....++.+..++++++++. .. + .++. ..+..++. +.+...+
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~---~~-~-~~~~---~~~~~~~~-~~l~~~~ 73 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTV---GF-P-RLRQ---FPKRYLLA-GGLLFVS 73 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHc---cc-c-cccc---ccHHHHHH-HhHHHHH
Confidence 3567889999999999999998888876 69999999999988887652 11 1 1111 11222222 3333334
Q ss_pred HHHHHHHHh----ccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732 156 RVGLCTWCL----SRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 216 (249)
Q Consensus 156 a~~l~~~al----~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~ 216 (249)
.+.++++++ +..++..++++.++.|++..++++++++|++++.+++|.++-+.|+.+...+
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~ 138 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG 138 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence 445555555 4567888899999999999999999999999999999999999999887754
No 38
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.75 E-value=6.6e-07 Score=81.33 Aligned_cols=125 Identities=12% Similarity=0.084 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 025732 89 SAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTG 168 (249)
Q Consensus 89 a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~al~~~g 168 (249)
..+++..|...+..|-|+.++.++++++++.+.++......+...+. .....|..++.+|++.... +...+.+++..+
T Consensus 62 ~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~llp~gl~~~~~-~~~~~~sl~~~s 139 (350)
T PTZ00343 62 VLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK-SLKLFLKNFLPQGLCHLFV-HFGAVISMGLGA 139 (350)
T ss_pred HHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcc
Confidence 34566777777777657999999999998876555332111111111 0123466777888766554 666779999999
Q ss_pred ccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcc
Q 025732 169 PLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW 215 (249)
Q Consensus 169 ~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~ 215 (249)
++.+.+...++|++.+++++++++|+++..+++|.+++++|+.+...
T Consensus 140 vs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 140 VSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 99999999999999999999999999999999999999999988753
No 39
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.75 E-value=4.4e-07 Score=80.54 Aligned_cols=120 Identities=14% Similarity=0.134 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Q 025732 91 WFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPL 170 (249)
Q Consensus 91 y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~al~~~g~~ 170 (249)
++++.|...++.+.|...+.+++.++++...+.......+..+++ ...|..++..|++ ..+.+.+.++++++++++
T Consensus 17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~-~~~~~~~~~~~l~~~s~s 92 (302)
T TIGR00817 17 FNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKIS---SALLKLLLPVAIV-HTIGHVTSNVSLSKVAVS 92 (302)
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC---HHHHHHHHHHHHH-HHHHHHHHHHHHHhccHH
Confidence 455667777776678999999999987766554211111111111 2357777778877 477789999999999999
Q ss_pred chhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhc
Q 025732 171 YVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM 214 (249)
Q Consensus 171 ~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~ 214 (249)
.+++...+.|++.+++++++++|+++..+++|.++++.|+.+..
T Consensus 93 ~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 93 FTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999997653
No 40
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.71 E-value=2.2e-07 Score=70.84 Aligned_cols=66 Identities=15% Similarity=0.138 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhc
Q 025732 149 AVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM 214 (249)
Q Consensus 149 gv~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~ 214 (249)
++++.++++.+|.+++++.+...+....++.|+++.++|++++||++++.+++|.++|+.|+.+..
T Consensus 43 ~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 43 ALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 446778899999999999999999999999999999999999999999999999999999987654
No 41
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.60 E-value=2.2e-07 Score=81.25 Aligned_cols=192 Identities=14% Similarity=0.186 Sum_probs=138.1
Q ss_pred HHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHH
Q 025732 9 TFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMN 88 (249)
Q Consensus 9 ~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~ 88 (249)
++++..+..+.|.+.. +.+...+...|+.+..+.+..+. . ...+..+...|..++...-+.=
T Consensus 123 Vmlmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~s-~-----------~~~g~~ns~~G~~Ll~~~L~fD 184 (327)
T KOG1581|consen 123 VMLMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSDS-S-----------SKSGRENSPIGILLLFGYLLFD 184 (327)
T ss_pred HHHHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCCC-c-----------cccCCCCchHhHHHHHHHHHHH
Confidence 4667778888888887 99999999999987754322110 0 1112235578998888887777
Q ss_pred HHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHHHHHHhccCC--ccccccchhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 025732 89 SAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEP--SDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLS 165 (249)
Q Consensus 89 a~y~v~~k~~~~~~~-~~~~~~~~~~l~g~i~l~~~al~~~~~~--~~~~~~~~~~~~~llylgv~~t~la~~l~~~al~ 165 (249)
++-+..++++.+++. .+..+++...+++++......+..++.. -++....++.+..++..... ..++..+.++-++
T Consensus 185 gfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~-gavGQ~FI~~TI~ 263 (327)
T KOG1581|consen 185 GFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTC-GAVGQLFIFYTIE 263 (327)
T ss_pred hhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHh-hhhhhheehhhHh
Confidence 777777888777654 3578888888988887766533323211 12221222345555556654 4566677777999
Q ss_pred cCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccccc
Q 025732 166 RTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSK 219 (249)
Q Consensus 166 ~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~ 219 (249)
+-|+..-+.++..--+++++++.+.+|.++++.|++|..+++.|+++-..-|+|
T Consensus 264 ~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 264 RFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999887664444
No 42
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.59 E-value=1.1e-06 Score=76.64 Aligned_cols=139 Identities=12% Similarity=0.100 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCcccc-ccchhHHHHHHHHHHHHH
Q 025732 75 ILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWK-LGLDIGLVAVLYSAVIGT 153 (249)
Q Consensus 75 ~~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~-~~~~~~~~~llylgv~~t 153 (249)
..|.++.+.+-+.|+.-..+.|- .++.+ +.++..+..+.+...++.+.....+..+-++ ...+..+......++ --
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kl-l~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~-li 82 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKL-LEPLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTAL-LI 82 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHH-HccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHH-HH
Confidence 46999999999999998877654 56665 5899999999888877766554432211111 112234555555554 45
Q ss_pred HHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732 154 GFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 216 (249)
Q Consensus 154 ~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~ 216 (249)
.+...+|.|+..+....++|.-.|+.|++.++.|.++++|+++..|++..++-.+||..-.+.
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999999999999877654
No 43
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.56 E-value=4.8e-06 Score=72.16 Aligned_cols=143 Identities=18% Similarity=0.252 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHH
Q 025732 75 ILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTG 154 (249)
Q Consensus 75 ~~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~ 154 (249)
..+....+..++.|+......|+..++..+.........+.+.+...+.... . ....+... ..+......+.+...
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~--~~~~~~~~~~~~~~~ 81 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLL-E-PRGLRPAL--RPWLLLLLLALLGLA 81 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHh-h-cccccccc--cchHHHHHHHHHHHH
Confidence 5677888888899999988888776652223445555666666553222211 1 10011111 113344456777888
Q ss_pred HHHHHHHHHhccCCccchhhhhhHHHHHHHHHHH-HHhCCccchhhHHHHHHHHHHhhhhcccccccc
Q 025732 155 FRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDV-VIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEE 221 (249)
Q Consensus 155 la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~-l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~~ 221 (249)
..+.+|+.++++.++..++...+..|++..++++ ++++|++++.+++|..+.+.|++++..+...+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~ 149 (292)
T COG0697 82 LPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGG 149 (292)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcch
Confidence 9999999999999999999999999999999997 777999999999999999999999887665443
No 44
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.55 E-value=2.7e-07 Score=78.39 Aligned_cols=195 Identities=11% Similarity=0.008 Sum_probs=115.2
Q ss_pred chhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhc-----------CCCCcCCCCCCCCCccccCCCC
Q 025732 3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYK-----------GPPLIGELSHSGSPRRLLLSPQ 71 (249)
Q Consensus 3 ~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~-----------g~~~~~~~~~~~~~~~~~~~~~ 71 (249)
+..|+++++....+.++|.+.. |+++.++...|++...+.+ +...... ++.++ .....
T Consensus 12 s~~l~~v~l~~~~~~~~~~~~~------~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~---~~~~~--~~~~~ 80 (222)
T TIGR00803 12 QNNLVLIALGNLLAAGKQVTQL------KILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQM---VQSSA--KTLMF 80 (222)
T ss_pred hcchHHHHHhcccccceeeehH------HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeec---CCCCc--ccccc
Confidence 4568888888888888888777 9999999999887532211 1000000 00000 00011
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHHHHHHhccC-Ccccc--ccchhHHHHHHH
Q 025732 72 LSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFY-LFFFNTILSTAFALIVVSE-PSDWK--LGLDIGLVAVLY 147 (249)
Q Consensus 72 ~~~~~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~-~~l~g~i~l~~~al~~~~~-~~~~~--~~~~~~~~~lly 147 (249)
.+...|....+.+.++=+.-.+..++..|+.+...-...+ ..+++.+.........+.. ..++. ...+...+
T Consensus 81 g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 156 (222)
T TIGR00803 81 GNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVW---- 156 (222)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHH----
Confidence 2345676666666666555566666654443221111111 1222222211111111111 11111 11111111
Q ss_pred HHHHHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhh
Q 025732 148 SAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYA 212 (249)
Q Consensus 148 lgv~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l 212 (249)
.-++...++..+..+.+++.++...+....+.++++.+++++++||++++.+++|+.+++.|+++
T Consensus 157 ~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 157 IVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 22234566778899999999999999999999999999999999999999999999999998764
No 45
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.46 E-value=1.3e-06 Score=76.92 Aligned_cols=192 Identities=16% Similarity=0.180 Sum_probs=143.2
Q ss_pred chhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHH
Q 025732 3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLA 82 (249)
Q Consensus 3 ~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l 82 (249)
+.+|+++++....+++.|++.+ -+..+..-.+|....++. +. .-...|..+++
T Consensus 111 n~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~~---d~------------------sf~~~gY~w~~ 163 (314)
T KOG1444|consen 111 NLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAFT---DL------------------SFNLRGYSWAL 163 (314)
T ss_pred hchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhccc---cc------------------eecchhHHHHH
Confidence 5688999999999888777766 888777777777665421 11 11245899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHHHHHHhccC------CccccccchhHHHHHHHHHHHHHHH
Q 025732 83 AEAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSE------PSDWKLGLDIGLVAVLYSAVIGTGF 155 (249)
Q Consensus 83 ~aa~~~a~y~v~~k~~~~~~~-~~~~~~~~~~l~g~i~l~~~al~~~~~------~~~~~~~~~~~~~~llylgv~~t~l 155 (249)
...++-+.+.+..|+..+... +....+.+..+++...+..+.++.++- .+.|. ....|..+...++++-++
T Consensus 164 ~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~--~~~~~~~~~lScv~gf~i 241 (314)
T KOG1444|consen 164 ANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWS--DSSVLVVMLLSCVMGFGI 241 (314)
T ss_pred HHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhccccc--chhHHHHHHHHHHHHHHH
Confidence 999999999999998765422 236678888888888877777665531 11121 122467788888888888
Q ss_pred HHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccccccccc
Q 025732 156 RVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTT 224 (249)
Q Consensus 156 a~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~~~~~ 224 (249)
.|. -.|+.+..+++..++.....-....+...++.|+++++..++|..+-+.|-.+....+.++++.+
T Consensus 242 sy~-s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~ 309 (314)
T KOG1444|consen 242 SYT-SFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQP 309 (314)
T ss_pred HHH-HHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCC
Confidence 755 55699999999999999888888899999999999999999999998887777777665554443
No 46
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=98.40 E-value=1.6e-06 Score=75.26 Aligned_cols=193 Identities=15% Similarity=0.180 Sum_probs=129.7
Q ss_pred hhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHH
Q 025732 4 LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAA 83 (249)
Q Consensus 4 ~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~ 83 (249)
..-+|+.+++.-+++++++.+ ||+|+....+|++.+... ++.. ++++. ....+.+.|+++.+.
T Consensus 121 aviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~---d~~~----~~~p~----~d~s~iitGdllIii 183 (372)
T KOG3912|consen 121 AVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSL---DVHL----VTDPY----TDYSSIITGDLLIII 183 (372)
T ss_pred chhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeee---eccc----ccCCc----cccccchhhhHHHHH
Confidence 345889999999999999999 999999999999988421 1111 01110 112345889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHHHHHHhc----c-C----Ccc-ccccchhHHH-----HHHH
Q 025732 84 EAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVV----S-E----PSD-WKLGLDIGLV-----AVLY 147 (249)
Q Consensus 84 aa~~~a~y~v~~k~~~~~~~-~~~~~~~~~~l~g~i~l~~~al~~~----~-~----~~~-~~~~~~~~~~-----~lly 147 (249)
+-+.-|...+.-.|..+++. +|+....|.-++|.+.+..++.... . + +.. |. .+...|. ..++
T Consensus 184 aqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~e-D~~~~~~~~~e~p~l~ 262 (372)
T KOG3912|consen 184 AQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLE-DWGDAFAALQESPSLA 262 (372)
T ss_pred HHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchh-hHHHHHHHhcCCchhH
Confidence 99999999998888776643 5799999999999776665544321 1 1 110 11 0000111 1223
Q ss_pred HHHHHHHHHHHHHHH----HhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhc
Q 025732 148 SAVIGTGFRVGLCTW----CLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM 214 (249)
Q Consensus 148 lgv~~t~la~~l~~~----al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~ 214 (249)
+...+..++-.+++. .-|..+++.=.+...+--.+-=+++..+..|.++..|+.|.++.+.|.++.+
T Consensus 263 val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~ 333 (372)
T KOG3912|consen 263 VALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYN 333 (372)
T ss_pred HHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444432 2344566666666667667777788888899999999999999999988875
No 47
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.39 E-value=1e-05 Score=70.11 Aligned_cols=198 Identities=16% Similarity=0.188 Sum_probs=125.3
Q ss_pred hhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHH
Q 025732 4 LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAA 83 (249)
Q Consensus 4 ~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~ 83 (249)
-.++.++++++++.++|-+.+ |+..+++-.+|+++-++.+.++.+..++.- ...+...+..-+..|..+...
T Consensus 100 gsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l--~~~~~~~~~~~w~iGi~lL~~ 171 (330)
T KOG1583|consen 100 GSLLANMILGWILLGKRYSLR------QYSSVLMITIGIIICTLFSSKDGRSKLSGL--DSGSAQSDFFWWLIGIALLVF 171 (330)
T ss_pred CcHHHHHHHHHHhccceeehh------hhhhHHhhhhhheeEEeecCcchhhhhccc--ccCcccccchHHHHHHHHHHH
Confidence 357889999999999998888 999999999999887654333322100000 000011222346789888877
Q ss_pred HHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHHHHHHhccCC-ccc--------------cccchhHHHHHHH
Q 025732 84 EAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEP-SDW--------------KLGLDIGLVAVLY 147 (249)
Q Consensus 84 aa~~~a~y~v~~k~~~~~~~-~~~~~~~~~~l~g~i~l~~~al~~~~~~-~~~--------------~~~~~~~~~~lly 147 (249)
+-+.=|...+.+.+.-++++ ++-+..++.-+.+.-..+.. ..+. ++| ...-+..|..++.
T Consensus 172 al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~----~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~ 247 (330)
T KOG1583|consen 172 ALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFM----GDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLF 247 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHh----cchHHHHHHHHhcCcceeccccCccccHHHHHHHH
Confidence 77777777777777766654 45567777666654333221 1110 111 1111123444433
Q ss_pred HHHHHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhc
Q 025732 148 SAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM 214 (249)
Q Consensus 148 lgv~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~ 214 (249)
.. +....+.---+..-.+..+-.+++...+-=.++++++++.++.+++++.++|..+++.|-++..
T Consensus 248 n~-L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 248 NV-LTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred HH-HHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 22 2222222222334455667778888889999999999999999999999999999999966553
No 48
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.39 E-value=5.8e-06 Score=72.49 Aligned_cols=183 Identities=21% Similarity=0.290 Sum_probs=125.0
Q ss_pred chhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHH
Q 025732 3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLA 82 (249)
Q Consensus 3 ~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l 82 (249)
++.++|+.+++.+|.-||.++. -..-+++-..|+.+.+ ++..+ -...|..+.+
T Consensus 118 SSsi~FIllFs~if~lEk~~w~------L~l~v~lI~~Glflft-~KsTq--------------------f~i~Gf~lv~ 170 (349)
T KOG1443|consen 118 SSSILFILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFT-YKSTQ--------------------FNIEGFFLVL 170 (349)
T ss_pred ccHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEE-ecccc--------------------eeehhHHHHH
Confidence 4679999999999999999888 7777777777887774 33322 2357888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhc----hhHHHHHHHHHHHHHHHHHHHHHhccCC-c----cccc-cchhHHHHHHHHHHHH
Q 025732 83 AEAFMNSAWFILQALILRKFA----AVLIIMFYLFFFNTILSTAFALIVVSEP-S----DWKL-GLDIGLVAVLYSAVIG 152 (249)
Q Consensus 83 ~aa~~~a~y~v~~k~~~~~~~----~~~~~~~~~~l~g~i~l~~~al~~~~~~-~----~~~~-~~~~~~~~llylgv~~ 152 (249)
+++++-++-..+..+..++.| +|++......-.-.+.++|..+.+|+.. . .|.. .+...+..+.+.+. +
T Consensus 171 ~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l-~ 249 (349)
T KOG1443|consen 171 AASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISL-G 249 (349)
T ss_pred HHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHH-H
Confidence 887776665555555555432 3555555544445556667766666431 1 2221 11122333333322 2
Q ss_pred HHHHHH---HHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhh
Q 025732 153 TGFRVG---LCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAV 213 (249)
Q Consensus 153 t~la~~---l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~ 213 (249)
...++. .=+..+++++....++..-.-=+...+++..+++|+++...++|..+.+.|+...
T Consensus 250 g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 250 GLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 233332 3345788899999999999999999999999999999999999999999998876
No 49
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.38 E-value=6e-06 Score=73.15 Aligned_cols=132 Identities=12% Similarity=0.036 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHH
Q 025732 77 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFR 156 (249)
Q Consensus 77 G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la 156 (249)
|.++.++++++|+...+..|+.. ..+. .... ...++.+....+......+. +. ....+..-+..|+ .=.++
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~-~~~~--~~~~g~l~~~~~~~~~~~~~--~~--~~~~~~~g~l~G~-~w~ig 72 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGPY-SQTL--GTTFGALILSIAIAIFVLPE--FW--ALSIFLVGLLSGA-FWALG 72 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCHH-HHHH--HHHHHHHHHHHHHHHHhCCc--cc--ccHHHHHHHHHHH-HHHhh
Confidence 57889999999999988888753 3322 2222 34556555554444333211 11 1112222222332 35677
Q ss_pred HHHHHHHhccCCccchhhhhh-HHHHHHHHHHHHHhCCccchhh----HHHHHHHHHHhhhhcccc
Q 025732 157 VGLCTWCLSRTGPLYVSMFKP-LAIVFSIVMDVVIVGDAFCLGS----LIGAMIIVAGFYAVMWGK 217 (249)
Q Consensus 157 ~~l~~~al~~~g~~~~s~~~~-l~Pi~a~l~~~l~lgE~~~~~~----~iG~~LIi~gv~l~~~~~ 217 (249)
..+|+.++++.|.+.+-.+.+ ++|+++.+++.+++||+.+..+ ++|.++++.|+++....+
T Consensus 73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 899999999999999988888 8999999999999999999999 999999999988876554
No 50
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.21 E-value=6.7e-05 Score=66.38 Aligned_cols=128 Identities=9% Similarity=-0.051 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHH
Q 025732 74 WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGT 153 (249)
Q Consensus 74 ~~~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t 153 (249)
...|..++++++++|+......|...++.+ |..+.++.++++++.++++...... .+ + ...|...+..|+. .
T Consensus 10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~~~-~~~~~~~R~~~a~l~l~~~~~~~~~---~~--~-~~~~~~~~~~g~~-~ 81 (293)
T PRK10532 10 VWLPILLLLIAMASIQSGASLAKSLFPLVG-APGVTALRLALGTLILIAIFKPWRL---RF--A-KEQRLPLLFYGVS-L 81 (293)
T ss_pred cchHHHHHHHHHHHHHhhHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhHHhc---cC--C-HHHHHHHHHHHHH-H
Confidence 367899999999999999999998888876 6899999999999888766432111 11 1 1234445556654 5
Q ss_pred HHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcc
Q 025732 154 GFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW 215 (249)
Q Consensus 154 ~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~ 215 (249)
++.+.++++++++.++..+++..+..|++..+++. |++.. ..+..+.+.|+++...
T Consensus 82 ~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~~--~~~~~i~~~Gv~li~~ 137 (293)
T PRK10532 82 GGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPVD--FVWVVLAVLGLWFLLP 137 (293)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChHH--HHHHHHHHHHHheeee
Confidence 66778899999999999999999999999988873 55544 4556667788877653
No 51
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.17 E-value=4.1e-05 Score=66.82 Aligned_cols=178 Identities=13% Similarity=0.092 Sum_probs=110.0
Q ss_pred HHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHHHHH
Q 025732 7 AFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAF 86 (249)
Q Consensus 7 i~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~ 86 (249)
+.+.+.++++++|.-+.+++ ..-.+++++-++|+++-+..+ +. +. ..+...+...|....+.+.+
T Consensus 84 vg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~lts~~~-~~-----------~~-~~~~~~~~~kgi~~Ll~sti 148 (269)
T PF06800_consen 84 VGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVILTSYQD-KK-----------SD-KSSSKSNMKKGILALLISTI 148 (269)
T ss_pred HHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHHhcccc-cc-----------cc-ccccccchhhHHHHHHHHHH
Confidence 44678889999998776610 111235555555655443211 00 00 00112345679999999999
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHH---HHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 025732 87 MNSAWFILQALILRKFAAVLIIMFYLF---FFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWC 163 (249)
Q Consensus 87 ~~a~y~v~~k~~~~~~~~~~~~~~~~~---l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~a 163 (249)
.|..|.++.|.. +.+ +.....-|. +.+++++..+ ..+. .++ ...|..+ ..|+ .=.++..+|..+
T Consensus 149 gy~~Y~~~~~~~--~~~-~~~~~lPqaiGm~i~a~i~~~~---~~~~--~~~---k~~~~ni-l~G~-~w~ignl~~~is 215 (269)
T PF06800_consen 149 GYWIYSVIPKAF--HVS-GWSAFLPQAIGMLIGAFIFNLF---SKKP--FFE---KKSWKNI-LTGL-IWGIGNLFYLIS 215 (269)
T ss_pred HHHHHHHHHHhc--CCC-hhHhHHHHHHHHHHHHHHHhhc---cccc--ccc---cchHHhh-HHHH-HHHHHHHHHHHh
Confidence 999999996542 232 344443332 2333222221 1111 111 1233333 2333 345677888999
Q ss_pred hccCCccchhhhhhHHHHHHHHHHHHHhCCccchh----hHHHHHHHHHHhhh
Q 025732 164 LSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLG----SLIGAMIIVAGFYA 212 (249)
Q Consensus 164 l~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~----~~iG~~LIi~gv~l 212 (249)
.++.|.+.+-.+..+.++++.+.+.+++||+=+.. .++|.++|+.|.++
T Consensus 216 ~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 216 AQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999987754 66788888887654
No 52
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=98.16 E-value=0.00011 Score=58.19 Aligned_cols=131 Identities=15% Similarity=0.154 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHH
Q 025732 78 GFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRV 157 (249)
Q Consensus 78 ~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~ 157 (249)
.++.+.+..+-+....+..++.++..+|+..+.+.+..|.+.+..+.+..++. .++.....+|+..+ -|++ .++..
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~l-G~~~V 78 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGLL-GVFFV 78 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHHH-HHHHH
Confidence 45677788888888888888888876679999999999999988877766542 22211122344432 4554 45556
Q ss_pred HHHHHHhccCCccchhhhhhH-HHHHHHHHHHH----HhCCccchhhHHHHHHHHHHhhh
Q 025732 158 GLCTWCLSRTGPLYVSMFKPL-AIVFSIVMDVV----IVGDAFCLGSLIGAMIIVAGFYA 212 (249)
Q Consensus 158 ~l~~~al~~~g~~~~s~~~~l-~Pi~a~l~~~l----~lgE~~~~~~~iG~~LIi~gv~l 212 (249)
.+..+.+++.|++.+...... |-+.++++|.+ .-++++++..++|.++++.|+++
T Consensus 79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 788889999999988887766 77888888886 45678999999999999999864
No 53
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.13 E-value=5.8e-06 Score=68.44 Aligned_cols=191 Identities=18% Similarity=0.184 Sum_probs=127.8
Q ss_pred hhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHH
Q 025732 4 LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAA 83 (249)
Q Consensus 4 ~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~ 83 (249)
+...|+.+++++.+++|...- |+++.++++.|+++++..++ + ..+...|..+...
T Consensus 88 CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~DN-~------------------~a~e~iGi~~AV~ 142 (290)
T KOG4314|consen 88 CNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYADN-E------------------HADEIIGIACAVG 142 (290)
T ss_pred hhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEeccc-h------------------hhhhhhhHHHHHH
Confidence 456789999999999999888 99999999999999853211 1 1234789999999
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHH----HHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHH
Q 025732 84 EAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTIL----STAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGL 159 (249)
Q Consensus 84 aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~----l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l 159 (249)
+++.-|+|.+..|+...+..- =....+....|..= .+|...+.....++|+.-...+|..+.-.+.....+ ..+
T Consensus 143 SA~~aAlYKV~FK~~iGnAn~-Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG~l~G~A~L~lAF-N~~ 220 (290)
T KOG4314|consen 143 SAFMAALYKVLFKMFIGNANF-GDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWGCLCGAAGLSLAF-NFL 220 (290)
T ss_pred HHHHHHHHHHHHHHHhccCcc-hhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCchhhhhHHHHHHHH-hhh
Confidence 999999999999987654220 11111222222111 111111111122334311123466655444443333 345
Q ss_pred HHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccccccc
Q 025732 160 CTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEE 221 (249)
Q Consensus 160 ~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~~ 221 (249)
.+.++....|-..|+-.....+--...+.++-+-.++...+.|-.+|+.|.++...+..+.+
T Consensus 221 iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~~e 282 (290)
T KOG4314|consen 221 INFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDKDE 282 (290)
T ss_pred eeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccchhh
Confidence 56688888899999988888888888999887777889999999999999988877655443
No 54
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=4.9e-06 Score=72.01 Aligned_cols=195 Identities=14% Similarity=0.081 Sum_probs=134.8
Q ss_pred hhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHH
Q 025732 4 LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAA 83 (249)
Q Consensus 4 ~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~ 83 (249)
+.-+|+.++++.++|+|-+.. -.. .+|++++.++-| .+.+ +..+.-...|.++...
T Consensus 137 LttvFtVlLtyvllkqkTs~~------~~~-----~C~lIi~GF~lG--vdqE-----------~~~~~ls~~GvifGVl 192 (347)
T KOG1442|consen 137 LTTVFTVLLTYVLLKQKTSFF------ALG-----CCLLIILGFGLG--VDQE-----------GSTGTLSWIGVIFGVL 192 (347)
T ss_pred hhhhHHHHhHHhhcccccccc------cce-----eehhheehheec--cccc-----------cccCccchhhhHHHHH
Confidence 566899999999999887665 332 333444433322 1110 0112224689999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHHHHHHhccCCcccc---ccchhHHHHHHHHHHHHHHHHHHH
Q 025732 84 EAFMNSAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPSDWK---LGLDIGLVAVLYSAVIGTGFRVGL 159 (249)
Q Consensus 84 aa~~~a~y~v~~k~~~~~~~-~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~---~~~~~~~~~llylgv~~t~la~~l 159 (249)
+.++-|...+..||...... .-..++.+....+.+..+|...+.++-.+.+. .+...-|..+...|+++-.++| .
T Consensus 193 aSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgy-v 271 (347)
T KOG1442|consen 193 ASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGY-V 271 (347)
T ss_pred HHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhh-e
Confidence 99999999999886543322 24678999999999999998777653211122 1122347777778888777764 4
Q ss_pred HHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccccccccc
Q 025732 160 CTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKT 223 (249)
Q Consensus 160 ~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~~~~ 223 (249)
-.|-+|-++|..=.+-..---..=.++++.+++|.-+..-+-|-++++.|-....+.|+.|++.
T Consensus 272 Tg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~ 335 (347)
T KOG1442|consen 272 TGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRK 335 (347)
T ss_pred eeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHh
Confidence 4567788888777777777777778899999999999999999999999987777766544443
No 55
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.06 E-value=3.5e-05 Score=59.39 Aligned_cols=69 Identities=13% Similarity=0.250 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHhccCCccchhhhh-hHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccc
Q 025732 149 AVIGTGFRVGLCTWCLSRTGPLYVSMFK-PLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGK 217 (249)
Q Consensus 149 gv~~t~la~~l~~~al~~~g~~~~s~~~-~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~ 217 (249)
.+++-+++|+++.+++++.+...+=... -+--+..++.+++++||++++.+++|..+|+.|++..+...
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 3455678999999999999987775553 57888899999999999999999999999999998887644
No 56
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=97.96 E-value=3e-05 Score=67.16 Aligned_cols=185 Identities=11% Similarity=0.165 Sum_probs=130.9
Q ss_pred HHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHH
Q 025732 9 TFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMN 88 (249)
Q Consensus 9 ~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~ 88 (249)
+++.++++.+.|-... ..++..+-.+|+++.++.+.. . +++. ...|..+.-+|-++=
T Consensus 146 VmiggifIqGkRY~v~------d~~aA~lm~lGli~FTLADs~-~---------------sPNF-~~~Gv~mIsgALl~D 202 (367)
T KOG1582|consen 146 VMIGGIFIQGKRYGVH------DYIAAMLMSLGLIWFTLADSQ-T---------------SPNF-NLIGVMMISGALLAD 202 (367)
T ss_pred hhheeeeeccccccHH------HHHHHHHHHHHHHhhhhcccc-c---------------CCCc-ceeeHHHHHHHHHHH
Confidence 3455666766666665 888888888898887643210 0 1112 367888887888888
Q ss_pred HHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHHHHHHhccCCccccc---cchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 025732 89 SAWFILQALILRKFA-AVLIIMFYLFFFNTILSTAFALIVVSEPSDWKL---GLDIGLVAVLYSAVIGTGFRVGLCTWCL 164 (249)
Q Consensus 89 a~y~v~~k~~~~~~~-~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~---~~~~~~~~llylgv~~t~la~~l~~~al 164 (249)
|+--.++.+..+..+ +..+..+++..+|.+.++......++-.+.|.. ++.......++.. .++.++...-...+
T Consensus 203 A~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s-~~gylG~~~VLalI 281 (367)
T KOG1582|consen 203 AVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFS-LAGYLGIVFVLALI 281 (367)
T ss_pred HHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHH-HHhHhhHHHHHHHH
Confidence 887778888777655 235677888888888887766665543344432 1112233333333 34556666666677
Q ss_pred ccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccc
Q 025732 165 SRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGK 217 (249)
Q Consensus 165 ~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~ 217 (249)
+.-|+..++.....--.++++++++++..+++....-|+.+|+.|+++-..+|
T Consensus 282 ~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 282 KLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 88899999999999999999999999999999999999999999999877665
No 57
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.94 E-value=7.1e-05 Score=56.86 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHhccCCccchhhh-hhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccc
Q 025732 150 VIGTGFRVGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGK 217 (249)
Q Consensus 150 v~~t~la~~l~~~al~~~g~~~~s~~-~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~ 217 (249)
+++-+++|.++..++++.+...+=.. .-+--+...+.+++++||++++.+++|..+|+.|++..+...
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44567889999999999987766444 446778889999999999999999999999999999887654
No 58
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.87 E-value=0.00045 Score=61.47 Aligned_cols=125 Identities=18% Similarity=0.211 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHH-hch--hHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 025732 90 AWFILQALILRK-FAA--VLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSR 166 (249)
Q Consensus 90 ~y~v~~k~~~~~-~~~--~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~al~~ 166 (249)
.|.++++++.++ +.. +..+++.|+.+..+...+.......+.. ....+...+..++ ...++-.+-+++++.
T Consensus 14 ~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~al~~ 87 (303)
T PF08449_consen 14 SYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKS-----RKIPLKKYAILSF-LFFLASVLSNAALKY 87 (303)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCC-----CcChHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 344566776554 223 6788899999888777665444331111 1122333334443 466777888999999
Q ss_pred CCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccccc
Q 025732 167 TGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKE 220 (249)
Q Consensus 167 ~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~ 220 (249)
++...-.++....|+..+++++++++++.+..++++.+++.+|+++....+.++
T Consensus 88 i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~ 141 (303)
T PF08449_consen 88 ISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSS 141 (303)
T ss_pred CChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccc
Confidence 999999999999999999999999999999999999999999999888765433
No 59
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.80 E-value=0.00064 Score=61.42 Aligned_cols=77 Identities=14% Similarity=0.155 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccc
Q 025732 141 GLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS 218 (249)
Q Consensus 141 ~~~~llylgv~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~ 218 (249)
.|+.-+.+++ .=+.+.++++.+.+.++.+.+.++.....++.+++++++++|++++.+++|+++.++|+.++.....
T Consensus 78 ~~w~y~lla~-~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 78 PWWKYFLLAL-LDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence 3444444564 5678899999999999999999999999999999999999999999999999999999988877544
No 60
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.71 E-value=7.4e-05 Score=66.60 Aligned_cols=199 Identities=19% Similarity=0.224 Sum_probs=103.7
Q ss_pred HHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHHHH
Q 025732 6 PAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEA 85 (249)
Q Consensus 6 Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa 85 (249)
=++.++++.+++|||++++ .+.|.++++.|..+++.. ++.-...++ ..+....-.+..+ .-........
T Consensus 87 lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~~-~~~~~~~~t---~~~l~~~~~~~~f-l~y~~~~~~~ 155 (300)
T PF05653_consen 87 LVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVIF-APKEEPIHT---LDELIALLSQPGF-LVYFILVLVL 155 (300)
T ss_pred hhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEEe-CCCCCCcCC---HHHHHHHhcCcce-ehhHHHHHHH
Confidence 3577889999999999999 999999999999887533 221110000 0000000001111 1111111111
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH---HHHHh-c--cCCccccccchhHHHHHHHHHHHHHHHHHHH
Q 025732 86 FMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTA---FALIV-V--SEPSDWKLGLDIGLVAVLYSAVIGTGFRVGL 159 (249)
Q Consensus 86 ~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~---~al~~-~--~~~~~~~~~~~~~~~~llylgv~~t~la~~l 159 (249)
...+.....+|..++ +.........++|+...+. ++... . .+.+++. ....|..++. -+.+...+...
T Consensus 156 -~~~L~~~~~~r~g~~--~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~--~~~~y~l~~~-~v~~~~~Q~~~ 229 (300)
T PF05653_consen 156 -ILILIFFIKPRYGRR--NILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFT--YPLTYLLLLV-LVVTAVLQLYY 229 (300)
T ss_pred -HHHHHHhhcchhccc--ceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhh--hhHHHHHHHH-HHHHHHHHHHH
Confidence 111211122221111 1111111222222222111 11111 0 1112332 1223444433 34567888888
Q ss_pred HHHHhccCCccchhhhhhH-HHHHHHHHHHHHhCCc--cch----hhHHHHHHHHHHhhhhcccccccc
Q 025732 160 CTWCLSRTGPLYVSMFKPL-AIVFSIVMDVVIVGDA--FCL----GSLIGAMIIVAGFYAVMWGKSKEE 221 (249)
Q Consensus 160 ~~~al~~~g~~~~s~~~~l-~Pi~a~l~~~l~lgE~--~~~----~~~iG~~LIi~gv~l~~~~~~~~~ 221 (249)
.++++++-+++.+....+. --..+++-|.++++|. .++ ....|..+++.|+++....|+.+.
T Consensus 230 LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~~~~ 298 (300)
T PF05653_consen 230 LNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKDKEI 298 (300)
T ss_pred HHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCchhc
Confidence 9999999999988887776 4566777788888985 444 446678888999988776555443
No 61
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.66 E-value=0.00032 Score=52.61 Aligned_cols=66 Identities=23% Similarity=0.410 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhccCCccch-hhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732 151 IGTGFRVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 216 (249)
Q Consensus 151 ~~t~la~~l~~~al~~~g~~~~-s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~ 216 (249)
++-.++|.+..+++|+++...+ +++.-+--+..++.+++++||++++.+++|..++++|+...+..
T Consensus 38 v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 38 VGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 4556889999999999986655 55666777888999999999999999999999999999887654
No 62
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.62 E-value=0.0001 Score=62.28 Aligned_cols=143 Identities=15% Similarity=0.217 Sum_probs=105.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH--HhchhHHHHHHHHHHHHHHHHHHHHHhcc-CCcccccc-chhHHHHHHHHH
Q 025732 74 WILGGFFLAAEAFMNSAWFILQALILR--KFAAVLIIMFYLFFFNTILSTAFALIVVS-EPSDWKLG-LDIGLVAVLYSA 149 (249)
Q Consensus 74 ~~~G~~l~l~aa~~~a~y~v~~k~~~~--~~~~~~~~~~~~~l~g~i~l~~~al~~~~-~~~~~~~~-~~~~~~~llylg 149 (249)
...|.+++....+.-+.|....|+-.+ +.. ....++|..+.+..+++.++++.+. ++...... ......++...|
T Consensus 153 lN~GY~Wm~~NclssaafVL~mrkri~ltNf~-d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISg 231 (309)
T COG5070 153 LNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFK-DFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISG 231 (309)
T ss_pred cCCceEEEehhhHhHHHHHHHHHHhhcccccc-hhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHH
Confidence 457889999999999998888776543 233 3788999999999888888887763 12111111 123455677778
Q ss_pred HHHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccc
Q 025732 150 VIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS 218 (249)
Q Consensus 150 v~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~ 218 (249)
+.+-+++ ++-.|+++.++.+.-++..-+.-.-..+.|.+++||+.+...+....+=..+-.+....|.
T Consensus 232 l~svgiS-y~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks 299 (309)
T COG5070 232 LCSVGIS-YCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKS 299 (309)
T ss_pred HHHhhhh-hccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554454 6789999999999999999999999999999999999999998887775554444444443
No 63
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.61 E-value=0.0015 Score=49.44 Aligned_cols=64 Identities=9% Similarity=0.175 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhccCCccch-hhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhc
Q 025732 151 IGTGFRVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM 214 (249)
Q Consensus 151 ~~t~la~~l~~~al~~~g~~~~-s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~ 214 (249)
.+-.++|++..+++|+.+...+ +++.-+--+...+.+++++||++++.+++|..+|+.|+...+
T Consensus 43 ~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 43 AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 4557899999999999997665 445557778889999999999999999999999999998764
No 64
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.56 E-value=0.0035 Score=50.01 Aligned_cols=139 Identities=15% Similarity=0.150 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHH
Q 025732 76 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGF 155 (249)
Q Consensus 76 ~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~l 155 (249)
...++.+++.++-....-+..++.+..++|+.-...++..|.+.+..+.+..+..+ ++....+.+|+.. .-|+++..+
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~-~~a~~~~~pwW~~-~GG~lGa~~ 82 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHP-GLAAVASAPWWAW-IGGLLGAIF 82 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCC-chhhccCCchHHH-Hccchhhhh
Confidence 45677888888888888888888887777888899999999999988877744322 2222122234332 223333222
Q ss_pred HHHHHHHHhccCCccchhhh-hhHHHHHHHHHHHHHhC----CccchhhHHHHHHHHHHhhhhcccc
Q 025732 156 RVGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVVIVG----DAFCLGSLIGAMIIVAGFYAVMWGK 217 (249)
Q Consensus 156 a~~l~~~al~~~g~~~~s~~-~~l~Pi~a~l~~~l~lg----E~~~~~~~iG~~LIi~gv~l~~~~~ 217 (249)
...-.....+.|++.+... ..-|-+.++++|-+=+. .++++..++|.+++++|+++.+.++
T Consensus 83 -vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~ 148 (150)
T COG3238 83 -VTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG 148 (150)
T ss_pred -hhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 3445567778886655444 44477888888887666 6799999999999999976665543
No 65
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.53 E-value=1.4e-05 Score=69.10 Aligned_cols=134 Identities=11% Similarity=0.169 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHH
Q 025732 75 ILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTG 154 (249)
Q Consensus 75 ~~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~ 154 (249)
..|..+..++ ..+....++.++..+.. |.......+++-.++..|..+...+. .|.......|+ +.=|+.++.
T Consensus 37 ~~gl~l~~vs-~ff~~~~vv~t~~~e~~--p~e~a~~r~l~~mlit~pcliy~~~~--v~gp~g~R~~L--iLRg~mG~t 109 (346)
T KOG4510|consen 37 NLGLLLLTVS-YFFNSCMVVSTKVLEND--PMELASFRLLVRMLITYPCLIYYMQP--VIGPEGKRKWL--ILRGFMGFT 109 (346)
T ss_pred ccCceehhhH-HHHhhHHHhhhhhhccC--hhHhhhhhhhhehhhhheEEEEEeee--eecCCCcEEEE--Eeehhhhhh
Confidence 4677777777 67777777777776653 35555555433333222222211111 01111111122 123444433
Q ss_pred HHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732 155 FRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 216 (249)
Q Consensus 155 la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~ 216 (249)
+..+.++++++++-+.++++.+..|++..+++|++|+|+.+....+|..+.+.|+.++.++
T Consensus 110 -gvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRP 170 (346)
T KOG4510|consen 110 -GVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRP 170 (346)
T ss_pred -HHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecC
Confidence 3455566899999999999999999999999999999999999999999999999888765
No 66
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.53 E-value=0.00073 Score=50.89 Aligned_cols=66 Identities=17% Similarity=0.307 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHhccCCccch-hhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcc
Q 025732 150 VIGTGFRVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW 215 (249)
Q Consensus 150 v~~t~la~~l~~~al~~~g~~~~-s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~ 215 (249)
+.+-+++|++...++|+.+...+ +++.-+--+...+.+++++||++++.+++|..+|+.|+...+.
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 44567899999999999987665 4455577888999999999999999999999999999988754
No 67
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.52 E-value=0.00098 Score=59.45 Aligned_cols=119 Identities=13% Similarity=0.117 Sum_probs=84.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHH
Q 025732 73 SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIG 152 (249)
Q Consensus 73 ~~~~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~ 152 (249)
++.+|.++.+.++++.+....++||..++.+. -..-.-. . .... +. . ..|+. |...
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~~~~---~-----~~~~--------l~--~-~~W~~----G~~~ 59 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLRAGS---G-----GRSY--------LR--R-PLWWI----GLLL 59 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccccccc---h-----hhHH--------Hh--h-HHHHH----HHHH
Confidence 46899999999999999999999987665431 0000000 0 0000 11 0 12322 2233
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcc
Q 025732 153 TGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW 215 (249)
Q Consensus 153 t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~ 215 (249)
.+++..+.+.++.-.+.+.++.+..+.-++..+++..++||+++...++|.++++.|..+...
T Consensus 60 ~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 60 MVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 344555666777789999999999999999999999999999999999999999999876554
No 68
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.49 E-value=0.0012 Score=48.54 Aligned_cols=57 Identities=21% Similarity=0.365 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhccCCccch-hhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHH
Q 025732 150 VIGTGFRVGLCTWCLSRTGPLYV-SMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMII 206 (249)
Q Consensus 150 v~~t~la~~l~~~al~~~g~~~~-s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LI 206 (249)
+.+-++++.++.+++|+.+...+ +++.-+..+...+.|++++||++++.+++|..+|
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 33567889999999999998888 5556688999999999999999999999999886
No 69
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.23 E-value=0.0043 Score=56.29 Aligned_cols=137 Identities=13% Similarity=0.119 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH--HHHHHHHHH-HHHHHhccCC-ccccccchhHHHHHHHHH
Q 025732 74 WILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYL--FFFNTILST-AFALIVVSEP-SDWKLGLDIGLVAVLYSA 149 (249)
Q Consensus 74 ~~~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~--~l~g~i~l~-~~al~~~~~~-~~~~~~~~~~~~~llylg 149 (249)
...|.++++++++||+.+.+-.|| .|+.+ .+.. |- .+++.++.. ..+.+..++. +.+...+...+..-+..|
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~--wE~~-W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G 80 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKK-VKKWS--WETM-WSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFG 80 (345)
T ss_pred hHHHHHHHHHHHHHhhcccccccc-cCCCc--hhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHH
Confidence 478999999999999999988887 55553 3333 33 111111111 0111111111 112211223444444555
Q ss_pred HHHHHHHHHHHHHHhccCCccchhhhhh-HHHHHHHHHHHHHhCCcc---c----hhhHHHHHHHHHHhhhhcc
Q 025732 150 VIGTGFRVGLCTWCLSRTGPLYVSMFKP-LAIVFSIVMDVVIVGDAF---C----LGSLIGAMIIVAGFYAVMW 215 (249)
Q Consensus 150 v~~t~la~~l~~~al~~~g~~~~s~~~~-l~Pi~a~l~~~l~lgE~~---~----~~~~iG~~LIi~gv~l~~~ 215 (249)
+ .=.++...+..++++.|.+.+..+.. ++-+.+.+++.+++||-. + ..-++|.++++.|+.+..+
T Consensus 81 ~-~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 81 A-LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred H-HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 4 35678899999999999888776654 578899999999999754 2 3578889999999999887
No 70
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.15 E-value=0.026 Score=51.29 Aligned_cols=199 Identities=11% Similarity=0.060 Sum_probs=108.4
Q ss_pred HHHHHHHHHHhccccc---ccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHH
Q 025732 6 PAFTFVLAIIFRLEKL---NWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLA 82 (249)
Q Consensus 6 Pi~~~ils~l~~~e~~---~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l 82 (249)
-+..+++..++++|-. +.. ....-.+|+++.++|+++.... |. ..+ + +++ .+.+.+.+...|.++++
T Consensus 111 lv~gtL~~~i~~gew~~~~~t~--~g~~~~~gv~liliGi~l~s~A-g~--~k~--~-~~~--~~~~~~~~~~KGi~ial 180 (345)
T PRK13499 111 LIVGTLMPPIINGNFDVLLATN--GGRMTLLGVLVALIGVAIVGRA-GQ--LKE--R-KMG--IKKAEEFNLKKGLILAV 180 (345)
T ss_pred HHHHHHHHHHHccccccccccc--hHHHHHHHHHHHHHHHHHHHHh-hh--hcc--c-ccc--cccccccchHhHHHHHH
Confidence 3455667777777643 222 1222677888888888887532 10 000 0 000 00012345678999999
Q ss_pred HHHHHHHHHH-------HHHHHHHHHhchhHHHHHHHHH---HHHHHH-HHHHHHh--c-cCCccc-ccc-chhH-HHHH
Q 025732 83 AEAFMNSAWF-------ILQALILRKFAAVLIIMFYLFF---FNTILS-TAFALIV--V-SEPSDW-KLG-LDIG-LVAV 145 (249)
Q Consensus 83 ~aa~~~a~y~-------v~~k~~~~~~~~~~~~~~~~~l---~g~i~l-~~~al~~--~-~~~~~~-~~~-~~~~-~~~l 145 (249)
++.+.|+.|. ...+...+...++......++. .|+... +++.... . ++..++ ... .... +-..
T Consensus 181 isgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~ 260 (345)
T PRK13499 181 MSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNV 260 (345)
T ss_pred HHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHH
Confidence 9999999998 4433221111122333322322 444332 2232321 1 111111 111 1011 1111
Q ss_pred ---HHHHHHHHHHHHHHHHHHhccCCccchhh---hh-hHHHHHHHHHHHHHhCCccc------hhhHHHHHHHHHHhhh
Q 025732 146 ---LYSAVIGTGFRVGLCTWCLSRTGPLYVSM---FK-PLAIVFSIVMDVVIVGDAFC------LGSLIGAMIIVAGFYA 212 (249)
Q Consensus 146 ---lylgv~~t~la~~l~~~al~~~g~~~~s~---~~-~l~Pi~a~l~~~l~lgE~~~------~~~~iG~~LIi~gv~l 212 (249)
...| +.=.+++..|..+-++.|...... +. .+.-+++.+.+.+ +||.=+ ...++|.++++.|..+
T Consensus 261 l~~~l~G-~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~-lkE~K~a~~k~~~~l~~G~vliI~g~~l 338 (345)
T PRK13499 261 LLSALAG-VMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLV-LKEWKGASRRPVRVLSLGCVVIILAANI 338 (345)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhhh-hhhccCCCccchhHHHHHHHHHHHHHHH
Confidence 2223 234667778888888887665544 33 5566999999995 999876 5779999999999887
Q ss_pred hccc
Q 025732 213 VMWG 216 (249)
Q Consensus 213 ~~~~ 216 (249)
....
T Consensus 339 ig~~ 342 (345)
T PRK13499 339 VGLG 342 (345)
T ss_pred Hhhc
Confidence 6554
No 71
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.03 E-value=0.009 Score=52.31 Aligned_cols=81 Identities=12% Similarity=0.122 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhh-HHHHHHHHHHHHHhCCccchhhH----HHHHHHHHHhhhhcc
Q 025732 141 GLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKP-LAIVFSIVMDVVIVGDAFCLGSL----IGAMIIVAGFYAVMW 215 (249)
Q Consensus 141 ~~~~llylgv~~t~la~~l~~~al~~~g~~~~s~~~~-l~Pi~a~l~~~l~lgE~~~~~~~----iG~~LIi~gv~l~~~ 215 (249)
.|+.-+..|+ .=.++...++++.++.|.+++..+.. ++-+.+.+++++++||.-+..+. ++.++|+.|+++..+
T Consensus 44 ~~~~~~lsG~-~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 44 SFIVAFLSGA-FWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 4555555665 45678899999999999999998874 56777899999999998776544 477888999999888
Q ss_pred ccccccc
Q 025732 216 GKSKEEK 222 (249)
Q Consensus 216 ~~~~~~~ 222 (249)
+++++++
T Consensus 123 ~~~~~~~ 129 (269)
T PF06800_consen 123 QDKKSDK 129 (269)
T ss_pred ccccccc
Confidence 7665554
No 72
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.01 E-value=0.00014 Score=55.22 Aligned_cols=39 Identities=26% Similarity=0.421 Sum_probs=36.8
Q ss_pred CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhh
Q 025732 2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 46 (249)
Q Consensus 2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~ 46 (249)
.++.|+++++++.+++|||++++ +++|++++++|++++.
T Consensus 67 ~~~~pi~~~ll~~~~~~er~~~~------~~~a~~l~~~Gv~li~ 105 (113)
T PF13536_consen 67 FSLSPIFTALLSWLFFKERLSPR------RWLAILLILIGVILIA 105 (113)
T ss_pred HHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHHHHh
Confidence 36799999999999999999999 9999999999999996
No 73
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=96.71 E-value=0.0043 Score=53.69 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccccc
Q 025732 154 GFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKE 220 (249)
Q Consensus 154 ~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~ 220 (249)
.++..+.+.++++.+|+.--+......++++++++++++.+++..||++..++..|+.++.......
T Consensus 28 ~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 28 AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 4566788889999999999999999999999999999999999999999999999999988765544
No 74
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.0067 Score=53.93 Aligned_cols=192 Identities=15% Similarity=0.156 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccc--cCCCCcchhHHHHHH
Q 025732 4 LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRL--LLSPQLSWILGGFFL 81 (249)
Q Consensus 4 ~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~G~~l~ 81 (249)
+.-+.-++++..++|||++.. ..+|.++|++|..+++.. .|.- +.-.+... .--.+..++ .....
T Consensus 99 lsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~h-aP~e-----~~i~t~~el~~~~~~~~Fl-iy~~~ 165 (335)
T KOG2922|consen 99 LSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVIH-APKE-----QEIESVEEVWELATEPGFL-VYVII 165 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEEe-cCcc-----cccccHHHHHHHhcCccHH-HHHHH
Confidence 344667899999999999999 999999999999988632 2211 10000000 000011111 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc--hhHHHHHHHHHHHHHHHHH-----HHH--HhccCCccccccchhHHHHHHHHHHHH
Q 025732 82 AAEAFMNSAWFILQALILRKFA--AVLIIMFYLFFFNTILSTA-----FAL--IVVSEPSDWKLGLDIGLVAVLYSAVIG 152 (249)
Q Consensus 82 l~aa~~~a~y~v~~k~~~~~~~--~~~~~~~~~~l~g~i~l~~-----~al--~~~~~~~~~~~~~~~~~~~llylgv~~ 152 (249)
+.-.++.-.+ ..+ +++. +.+.+.....+.|+.-..- .++ ....+ .|... +..|..++.+. .+
T Consensus 166 iil~~~il~~--~~~---p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~-~ql~~--~~ty~~~l~~~-~~ 236 (335)
T KOG2922|consen 166 IILIVLILIF--FYA---PRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGN-NQLFY--PLTWIFLLVVA-TC 236 (335)
T ss_pred HHHHHHHHhe--eec---ccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCC-ccccc--HHHHHHHHHHH-HH
Confidence 1111111111 111 1111 2344444444444221111 111 11111 22222 23455555454 46
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhH-HHHHHHHHHHHHhCCccc--h----hhHHHHHHHHHHhhhhcccc
Q 025732 153 TGFRVGLCTWCLSRTGPLYVSMFKPL-AIVFSIVMDVVIVGDAFC--L----GSLIGAMIIVAGFYAVMWGK 217 (249)
Q Consensus 153 t~la~~l~~~al~~~g~~~~s~~~~l-~Pi~a~l~~~l~lgE~~~--~----~~~iG~~LIi~gv~l~~~~~ 217 (249)
...+..-.++|++.-+.+.++...|. --.++++.+.++++|--. . ..+.|...++.|+++....|
T Consensus 237 ~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~k 308 (335)
T KOG2922|consen 237 VSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTK 308 (335)
T ss_pred HHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeec
Confidence 77888888999999998888877776 457788888889998543 3 45678888999988875433
No 75
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.21 E-value=0.0025 Score=54.68 Aligned_cols=137 Identities=9% Similarity=0.027 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHH
Q 025732 77 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFR 156 (249)
Q Consensus 77 G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la 156 (249)
+.+++|+-++.|+..-.+..|... +|.. -...+.+|++......++...+...+ ..+..-+..|.+ =.++
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG---~p~q-Q~lGtT~GALifaiiv~~~~~p~~T~-----~~~iv~~isG~~-Ws~G 72 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGG---KPYQ-QTLGTTLGALIFAIIVFLFVSPELTL-----TIFIVGFISGAF-WSFG 72 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCC---ChhH-hhhhccHHHHHHHHHHheeecCccch-----hhHHHHHHhhhH-hhhh
Confidence 467888899999998776655321 1222 22334445544443333322111111 224433445544 3566
Q ss_pred HHHHHHHhccCCccchhhhhh-HHHHHHHHHHHHHhCCccchhhH----HHHHHHHHHhhhhcccccccccc
Q 025732 157 VGLCTWCLSRTGPLYVSMFKP-LAIVFSIVMDVVIVGDAFCLGSL----IGAMIIVAGFYAVMWGKSKEEKT 223 (249)
Q Consensus 157 ~~l~~~al~~~g~~~~s~~~~-l~Pi~a~l~~~l~lgE~~~~~~~----iG~~LIi~gv~l~~~~~~~~~~~ 223 (249)
...++++++..|.+++..... +|-+-+.+++++.+||.-++.+. +..++++.|+++..++++.++++
T Consensus 73 Q~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~ 144 (288)
T COG4975 73 QANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEE 144 (288)
T ss_pred hhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccc
Confidence 789999999999999998776 57788899999999999888764 45677889999988876633333
No 76
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=95.74 E-value=0.003 Score=48.00 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=35.3
Q ss_pred chhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhh
Q 025732 3 NLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 46 (249)
Q Consensus 3 ~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~ 46 (249)
++.|++++++++++++||++.+ |++|+.+.+.|++++.
T Consensus 71 ~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 71 SLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 3678999999999999999999 9999999999999884
No 77
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.45 E-value=0.06 Score=41.00 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=49.7
Q ss_pred HHHHHHHhccCCccchhhh-hhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhh
Q 025732 157 VGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAV 213 (249)
Q Consensus 157 ~~l~~~al~~~g~~~~s~~-~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~ 213 (249)
-.+|++.+++.+-+.+... +.+.-+++++.++++.+|..++..++|+++|+.|+.+.
T Consensus 55 Sv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 55 SVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 4678888999999998888 48899999999998877788889999999999998753
No 78
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=95.43 E-value=0.011 Score=49.38 Aligned_cols=78 Identities=15% Similarity=0.303 Sum_probs=66.4
Q ss_pred HHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccccccc--ccccccCCCCCC
Q 025732 156 RVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEE--KTTEDCGLGSVN 233 (249)
Q Consensus 156 a~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~~--~~~~~~~~~~~~ 233 (249)
+.++|..++++.+|+.++...-..-.+..+++++.+|+++.-..++..++-+.|+.+..+..+.++ --.-+|..||..
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi~~AV~SA~ 145 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGIACAVGSAF 145 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhhhhHHHHHHHHH
Confidence 468899999999999999999999999999999999999999999999999999988887655433 334567666643
No 79
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=94.90 E-value=0.027 Score=50.58 Aligned_cols=121 Identities=17% Similarity=0.253 Sum_probs=88.2
Q ss_pred HHHHHHHHHH--HhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 025732 91 WFILQALILR--KFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTG 168 (249)
Q Consensus 91 y~v~~k~~~~--~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~al~~~g 168 (249)
+++..|+..+ +.+-|..++..+...+.+.++..-.+-..++.+. .....|..++-+|++ ..++..+-+.++++.+
T Consensus 32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~--~~~~~~~~llpl~~~-~~~~~v~~n~Sl~~v~ 108 (316)
T KOG1441|consen 32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKI--SSKLPLRTLLPLGLV-FCISHVLGNVSLSYVP 108 (316)
T ss_pred eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCcc--ccccchHHHHHHHHH-HHHHHHhcchhhhccc
Confidence 3556676666 4555788888877777777766554433222221 122457778888875 5677888899999999
Q ss_pred ccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhc
Q 025732 169 PLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM 214 (249)
Q Consensus 169 ~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~ 214 (249)
.+..=+.-.++|++.+++++++.+|+.+...+.-...|+.|+.+..
T Consensus 109 VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias 154 (316)
T KOG1441|consen 109 VSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIAS 154 (316)
T ss_pred hhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEee
Confidence 9999999999999999999999999998876666655666655544
No 80
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=94.77 E-value=0.033 Score=50.58 Aligned_cols=68 Identities=18% Similarity=0.246 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccccc
Q 025732 153 TGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKE 220 (249)
Q Consensus 153 t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~ 220 (249)
=.++.+.++.+++.+.++..++.....-++...++.++.+|++++...++..+-++|++++...+.++
T Consensus 169 WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 169 WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 35678889999999999999999999999999999999999999999999999999999999887665
No 81
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=94.40 E-value=2.3 Score=38.58 Aligned_cols=136 Identities=15% Similarity=0.065 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc---hhHHHHHHHHHHHHHHHHHHHHHhc----cC----CccccccchhHHHHHH
Q 025732 78 GFFLAAEAFMNSAWFILQALILRKFA---AVLIIMFYLFFFNTILSTAFALIVV----SE----PSDWKLGLDIGLVAVL 146 (249)
Q Consensus 78 ~~l~l~aa~~~a~y~v~~k~~~~~~~---~~~~~~~~~~l~g~i~l~~~al~~~----~~----~~~~~~~~~~~~~~ll 146 (249)
.+.++...+-++.+....|...++.+ .+.+.++..=+.-.++.....+..+ .. .+.+.... +...+
T Consensus 17 ~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~---~~~~l 93 (345)
T KOG2234|consen 17 YLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAA---PRETL 93 (345)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhC---hHHHH
Confidence 55666667777777777776544321 1344444444444444333333321 11 11111111 11111
Q ss_pred HHHH--HHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732 147 YSAV--IGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 216 (249)
Q Consensus 147 ylgv--~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~ 216 (249)
-.++ +.-.+..-+++.+..+.+|+.-.+...+-...+.++.+++|+++++..||...++...|+.+++.+
T Consensus 94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~ 165 (345)
T KOG2234|consen 94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLP 165 (345)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 1111 112345568888999999999999999999999999999999999999999999999999999843
No 82
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.98 E-value=1.1 Score=39.98 Aligned_cols=113 Identities=16% Similarity=0.262 Sum_probs=78.0
Q ss_pred HHHHHHHHHhchh--HHHHHHHHHHHHHHHHHHHHHh--ccCCccccccchhHH--HHHHHHHHHHHHHHHHHHHHHhcc
Q 025732 93 ILQALILRKFAAV--LIIMFYLFFFNTILSTAFALIV--VSEPSDWKLGLDIGL--VAVLYSAVIGTGFRVGLCTWCLSR 166 (249)
Q Consensus 93 v~~k~~~~~~~~~--~~~~~~~~l~g~i~l~~~al~~--~~~~~~~~~~~~~~~--~~llylgv~~t~la~~l~~~al~~ 166 (249)
+..|....+++-| +.....|++...+.....-..- +.++-+|.. ...| ..++|.+-+-|+. +++++
T Consensus 29 vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~--~kk~~P~~~lf~~~i~t~~------~slk~ 100 (314)
T KOG1444|consen 29 VVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRT--AKKWFPVSLLFVGMLFTGS------KSLKY 100 (314)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHH--HHHHccHHHHHHHHHHHcc------ccccc
Confidence 3444444555433 4455599999888777654432 222222322 2233 3566666554444 58899
Q ss_pred CCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhh
Q 025732 167 TGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAV 213 (249)
Q Consensus 167 ~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~ 213 (249)
.+....+++-...|+...+....++|.+++...+....++++|-...
T Consensus 101 lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~ 147 (314)
T KOG1444|consen 101 LNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAA 147 (314)
T ss_pred cCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999888875544
No 83
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.26 E-value=0.04 Score=49.10 Aligned_cols=121 Identities=12% Similarity=0.118 Sum_probs=81.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHH
Q 025732 72 LSWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVI 151 (249)
Q Consensus 72 ~~~~~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~ 151 (249)
.++..|..+.+.+.+..+...++.||..++... + ..-.+.+...+-. . ..| |.|++
T Consensus 17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~-----------~-------~~ra~~gg~~yl~-~-~~W----w~G~l 72 (335)
T KOG2922|consen 17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA-----------S-------GLRAGEGGYGYLK-E-PLW----WAGML 72 (335)
T ss_pred cCceeeeeehhhccEEEeeehhhhHHHHHHHhh-----------h-------cccccCCCcchhh-h-HHH----HHHHH
Confidence 345778888888888888888887776655321 0 0000111111111 1 123 23444
Q ss_pred HHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc
Q 025732 152 GTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG 216 (249)
Q Consensus 152 ~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~ 216 (249)
..+++-..-+.+..-.+++.++.+..+.-+...+++..+++|++++...+|+++.++|-.+....
T Consensus 73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h 137 (335)
T KOG2922|consen 73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH 137 (335)
T ss_pred HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence 44444555555555689999999999999999999999999999999999999999986555443
No 84
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=93.23 E-value=0.0039 Score=53.52 Aligned_cols=182 Identities=10% Similarity=0.075 Sum_probs=104.2
Q ss_pred HHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHHHHHH
Q 025732 8 FTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFM 87 (249)
Q Consensus 8 ~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~ 87 (249)
-+.+++.+.++|..+ ...+.+++..++++.. |-... +-+| ++....+...+.-.|....+.+.+.
T Consensus 99 g~sL~gV~~f~EW~t---------~~~~IlG~iAlilivi--G~~lT---s~~~-~~nk~~~~~~n~kkgi~~L~iSt~G 163 (288)
T COG4975 99 GTSLFGVFVFHEWTT---------PTQIILGFIALILIVI--GIYLT---SKQD-RNNKEEENPSNLKKGIVILLISTLG 163 (288)
T ss_pred hceeeeEEEEeccCc---------chhHHHHHHHHHHHHH--hheEe---eeec-cccccccChHhhhhheeeeeeeccc
Confidence 345566667777543 3344566666655532 11110 0000 1111122333456898889999999
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 025732 88 NSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRT 167 (249)
Q Consensus 88 ~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l~~~al~~~ 167 (249)
|-.|.++.+...-+.-+.+--.+..+.++++.+- ....+. .. ....|..+ .-|+ -=+++...+..+.++.
T Consensus 164 Yv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~---~~~~~~--~~---~K~t~~ni-i~G~-~Wa~GNl~ml~a~~~~ 233 (288)
T COG4975 164 YVGYVVLFQLFDVDGLSAILPQAIGMVIGALILG---FFKMEK--RF---NKYTWLNI-IPGL-IWAIGNLFMLLAAQKV 233 (288)
T ss_pred eeeeEeeeccccccchhhhhHHHHHHHHHHHHHh---hccccc--ch---HHHHHHHH-hhHH-HHHhhHHHHHHhhhhh
Confidence 9999888654321100112222333334433321 111111 11 11234433 2343 2456778888899999
Q ss_pred CccchhhhhhHHHHHHHHHHHHHhCCccchhh----HHHHHHHHHHhhhhc
Q 025732 168 GPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGS----LIGAMIIVAGFYAVM 214 (249)
Q Consensus 168 g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~----~iG~~LIi~gv~l~~ 214 (249)
|.+..=.+.-+--+++.+-+.++++|+=+..+ ++|.++++.|..+.-
T Consensus 234 GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg 284 (288)
T COG4975 234 GVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLG 284 (288)
T ss_pred ceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhh
Confidence 99888888888899999999999999988754 578888888765543
No 85
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=91.58 E-value=2.4 Score=38.35 Aligned_cols=140 Identities=15% Similarity=0.153 Sum_probs=81.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHH-HHHHHHHHHHHHHHH-HHHhccCC-ccccccchhHHHHHHHHH
Q 025732 73 SWILGGFFLAAEAFMNSAWFILQALILRKFAAVLII-MFYLFFFNTILSTAF-ALIVVSEP-SDWKLGLDIGLVAVLYSA 149 (249)
Q Consensus 73 ~~~~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~-~~~~~l~g~i~l~~~-al~~~~~~-~~~~~~~~~~~~~llylg 149 (249)
+...|.++..+++++-+.+.+=.||. |+.+ .+. =..+.+++-++.-.+ +.+.-++. +-+...+...+......|
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws--WEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWS--WESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhc-CCcc--HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 45789999999999999988777764 5543 332 233455554443222 22222221 111122223344444455
Q ss_pred HHHHHHHHHHHHHHhccCCccchh-hhhhHHHHHHHHHHHHHhCC-------ccchhhHHHHHHHHHHhhhhccc
Q 025732 150 VIGTGFRVGLCTWCLSRTGPLYVS-MFKPLAIVFSIVMDVVIVGD-------AFCLGSLIGAMIIVAGFYAVMWG 216 (249)
Q Consensus 150 v~~t~la~~l~~~al~~~g~~~~s-~~~~l~Pi~a~l~~~l~lgE-------~~~~~~~iG~~LIi~gv~l~~~~ 216 (249)
++ =+++-..|-.++++.|.+... +..=+.-+++.++--++.|+ +-....++|.++.+.|+.+.-+.
T Consensus 81 ~l-WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A 154 (344)
T PF06379_consen 81 VL-WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKA 154 (344)
T ss_pred HH-HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHH
Confidence 43 455667788899999876543 33334445555555554432 22347889999999999988764
No 86
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=91.13 E-value=0.63 Score=40.08 Aligned_cols=142 Identities=15% Similarity=0.156 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-hc----------hhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHH-
Q 025732 83 AEAFMNSAWFILQALILRK-FA----------AVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAV- 150 (249)
Q Consensus 83 ~aa~~~a~y~v~~k~~~~~-~~----------~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv- 150 (249)
+--+||=.|-+.+.|+.+. |. -.+.+.++|+....+..=++..+.... +......|. |.+.
T Consensus 20 GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~----~~D~t~~~~---YaAcs 92 (337)
T KOG1580|consen 20 GIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKT----EIDNTPTKM---YAACS 92 (337)
T ss_pred chhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeecccc----cccCCcchH---HHHHH
Confidence 3357888888999998752 32 124556677776665543322221111 111111222 2221
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccc-cccccccccccCC
Q 025732 151 IGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWG-KSKEEKTTEDCGL 229 (249)
Q Consensus 151 ~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~-~~~~~~~~~~~~~ 229 (249)
..-.++...-+.+++..+=-..-+--..-|+=.+++|+++.+..-+|..+.=..+|+.|+.+..++ ++...-|.+.-|.
T Consensus 93 ~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~ 172 (337)
T KOG1580|consen 93 ASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGF 172 (337)
T ss_pred HHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccch
Confidence 122334455567788887555556667788889999999999999999999999999999998876 5555667777777
Q ss_pred CC
Q 025732 230 GS 231 (249)
Q Consensus 230 ~~ 231 (249)
|.
T Consensus 173 GE 174 (337)
T KOG1580|consen 173 GE 174 (337)
T ss_pred HH
Confidence 74
No 87
>PRK02237 hypothetical protein; Provisional
Probab=90.62 E-value=2 Score=32.34 Aligned_cols=45 Identities=20% Similarity=0.196 Sum_probs=37.9
Q ss_pred hhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccc
Q 025732 174 MFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS 218 (249)
Q Consensus 174 ~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~ 218 (249)
.+.-+..+.++++++.+-|++++.+.++|..+.+.|+.++.+.+|
T Consensus 64 AYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR 108 (109)
T PRK02237 64 AYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR 108 (109)
T ss_pred HhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence 444456678889999999999999999999999999988876554
No 88
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=90.30 E-value=1.2 Score=39.70 Aligned_cols=71 Identities=18% Similarity=0.416 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccc
Q 025732 147 YSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS 218 (249)
Q Consensus 147 ylgv~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~ 218 (249)
-.| ++|++=.++=+|+++.++.+.-++.-...+++-.+++.+|-=|+++|.-+.=..+|-+|+++..++..
T Consensus 89 Pta-lata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT 159 (349)
T KOG1443|consen 89 PTA-LATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST 159 (349)
T ss_pred hhh-hhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc
Confidence 344 47888888999999999999999999999999999999999999999999999999999988876544
No 89
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=89.61 E-value=0.43 Score=35.65 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCccchhhHHHHHHHHHHhhhhc
Q 025732 183 SIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM 214 (249)
Q Consensus 183 a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~ 214 (249)
-+.+++++++|++++.++.|.++++++++.+.
T Consensus 76 F~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF 107 (108)
T PF04342_consen 76 FAPFSVFYLGEPLKWNYLWAFLCILGAVYFIF 107 (108)
T ss_pred eHHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence 34677889999999999999999999987653
No 90
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=87.09 E-value=1.4 Score=38.32 Aligned_cols=127 Identities=9% Similarity=-0.002 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccC-CccccccchhHHHHHHHHHHHHHHH
Q 025732 77 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSE-PSDWKLGLDIGLVAVLYSAVIGTGF 155 (249)
Q Consensus 77 G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~-~~~~~~~~~~~~~~llylgv~~t~l 155 (249)
|.+.++.|+++|+...+=.||.- .. +++....+++....+.-+.+.+..+.+ ..+|.. +...+| +.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~-~g-Dg~~fQw~~~~~i~~~g~~v~~~~~~p~f~p~am-----lgG~lW------~~ 67 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFD-TG-DGFFFQWVMCSGIFLVGLVVNLILGFPPFYPWAM-----LGGALW------AT 67 (254)
T ss_pred CchhHHHHHHHhcccceeeEecc-CC-CcHHHHHHHHHHHHHHHHHHHHhcCCCcceeHHH-----hhhhhh------hc
Confidence 45677889999998888777643 22 344433333332222222222222211 111111 111111 11
Q ss_pred HHHHHHHHhccCCccchhhh-hhHHHHHHHHHHHH-HhCCcc-----chhhHHHHHHHHHHhhhhccc
Q 025732 156 RVGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVV-IVGDAF-----CLGSLIGAMIIVAGFYAVMWG 216 (249)
Q Consensus 156 a~~l~~~al~~~g~~~~s~~-~~l~Pi~a~l~~~l-~lgE~~-----~~~~~iG~~LIi~gv~l~~~~ 216 (249)
+..+-.-.++.+|-...-.+ ....-+.+-..+-+ ++|++. .++.++|.++++.|..+...-
T Consensus 68 gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fi 135 (254)
T PF07857_consen 68 GNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFI 135 (254)
T ss_pred CceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeee
Confidence 22222333444443222221 22344444444432 344332 357899999999987766543
No 91
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=86.83 E-value=0.15 Score=39.82 Aligned_cols=36 Identities=19% Similarity=0.398 Sum_probs=29.0
Q ss_pred hHHHHHHHHHH--hcccccccccccCCceeeeeeeehhhhhhhh
Q 025732 5 IPAFTFVLAII--FRLEKLNWENKSSQAKSLGTFASIGGAFVVT 46 (249)
Q Consensus 5 ~Pi~~~ils~l--~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~ 46 (249)
.++++.+.++. +++|+++.+ |++|+++.++|++++.
T Consensus 84 ~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~ 121 (129)
T PRK02971 84 SYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN 121 (129)
T ss_pred HHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence 34445555553 799999999 9999999999999884
No 92
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.63 E-value=1.8 Score=32.05 Aligned_cols=34 Identities=12% Similarity=0.268 Sum_probs=29.4
Q ss_pred HHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcc
Q 025732 182 FSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW 215 (249)
Q Consensus 182 ~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~ 215 (249)
+-+.++++.++|++.+.++.|..++.+|++++.+
T Consensus 82 iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 82 IFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 3456889999999999999999999999987653
No 93
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=85.31 E-value=0.25 Score=38.02 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhh
Q 025732 7 AFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 46 (249)
Q Consensus 7 i~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~ 46 (249)
+.+++.++++++|+++.. |++|+.+-++|++.+-
T Consensus 69 v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~ 102 (120)
T PRK10452 69 LFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIK 102 (120)
T ss_pred HHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhh
Confidence 446788999999999999 9999999999998874
No 94
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=84.77 E-value=2 Score=32.19 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccc
Q 025732 176 KPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS 218 (249)
Q Consensus 176 ~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~ 218 (249)
.-+..+.++++++.+-|++++.+.++|..+.+.|+.++.+.+|
T Consensus 64 GGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 64 GGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred hhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 3345677889999999999999999999999999998887654
No 95
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=83.36 E-value=0.35 Score=36.56 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhh
Q 025732 7 AFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 45 (249)
Q Consensus 7 i~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll 45 (249)
+.+++.++++++|+++.. |++|+.+-+.|++.+
T Consensus 74 v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l 106 (109)
T PRK10650 74 AATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence 445778889999999999 999999999999876
No 96
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=82.44 E-value=0.41 Score=36.27 Aligned_cols=33 Identities=18% Similarity=0.287 Sum_probs=30.0
Q ss_pred HHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhh
Q 025732 8 FTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 46 (249)
Q Consensus 8 ~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~ 46 (249)
.+++.++++++|+++.. |++|+.+-+.|++.+-
T Consensus 70 ~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~ 102 (110)
T PRK09541 70 LISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN 102 (110)
T ss_pred HHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 45788999999999999 9999999999999884
No 97
>PRK11431 multidrug efflux system protein; Provisional
Probab=82.42 E-value=0.39 Score=36.06 Aligned_cols=33 Identities=12% Similarity=0.040 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhh
Q 025732 7 AFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 45 (249)
Q Consensus 7 i~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll 45 (249)
+.+++.++++++|+++.. |++|+.+.+.|++.+
T Consensus 68 v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l 100 (105)
T PRK11431 68 VGAAITGIVLLGESASPA------RLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhh
Confidence 456788999999999999 999999999999987
No 98
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=81.45 E-value=0.45 Score=35.78 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhh
Q 025732 7 AFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVV 45 (249)
Q Consensus 7 i~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll 45 (249)
+.+++.++++++|+++.. |++|+.+-+.|++.+
T Consensus 69 v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~L 101 (106)
T COG2076 69 VGTALVGVLLFGESLSLI------KLLGLALILAGVIGL 101 (106)
T ss_pred HHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHh
Confidence 456788899999999999 999999999999987
No 99
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=80.04 E-value=9.7 Score=35.84 Aligned_cols=60 Identities=15% Similarity=0.070 Sum_probs=33.3
Q ss_pred hhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccccccccccccCCCCCCCccccccc
Q 025732 174 MFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPL 241 (249)
Q Consensus 174 ~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (249)
......|+++.++..+..-..-......|.+++..|+.+..+.++++++ .++.++||.|+
T Consensus 393 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~--------~~~~~~~~~~~ 452 (473)
T TIGR00905 393 RKALIVGVIACVYSIWLLYAAGLKYLLLGFILYAPGIIFYGRARKERGK--------HVFNKKEILIA 452 (473)
T ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCCCHHHHHHH
Confidence 3445666666655544332222234567888888887655554433321 13667888774
No 100
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=78.06 E-value=4.3 Score=36.02 Aligned_cols=58 Identities=16% Similarity=0.199 Sum_probs=46.6
Q ss_pred HHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcc
Q 025732 158 GLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW 215 (249)
Q Consensus 158 ~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~ 215 (249)
.+.+.++..+.++.--+..--..++.-+++..+++.+++..||+|...++.|+.++-.
T Consensus 101 slm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 101 SLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred HHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 3444455556666666666668899999999999999999999999999999887754
No 101
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.74 E-value=5.1 Score=35.44 Aligned_cols=110 Identities=21% Similarity=0.324 Sum_probs=74.9
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHhccCC-----ccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhh
Q 025732 102 FAAVLIIMFYLFFFNTILSTAFALIVVSEP-----SDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFK 176 (249)
Q Consensus 102 ~~~~~~~~~~~~l~g~i~l~~~al~~~~~~-----~~~~~~~~~~~~~llylgv~~t~la~~l~~~al~~~g~~~~s~~~ 176 (249)
.+.|+-.+.+|++....+...+.-....-+ ..++... ..-..++=+.++ -......-+.+++..|.+.--+-.
T Consensus 58 Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl-~t~r~vlplsvV-fi~mI~fnnlcL~yVgVaFYyvgR 135 (347)
T KOG1442|consen 58 LDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDL-ATARQVLPLSVV-FILMISFNNLCLKYVGVAFYYVGR 135 (347)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccH-HHHHhhcchhhe-eeeehhccceehhhcceEEEEecc
Confidence 455788899999987777666654322111 1111110 111112222211 223346678899999999998999
Q ss_pred hHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhh
Q 025732 177 PLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAV 213 (249)
Q Consensus 177 ~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~ 213 (249)
.+.-++.+++.+++++++=+.....++.+|+.|..+-
T Consensus 136 sLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lG 172 (347)
T KOG1442|consen 136 SLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLG 172 (347)
T ss_pred chhhhHHHHhHHhhcccccccccceeehhheehheec
Confidence 9999999999999999999999999999999997653
No 102
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=69.51 E-value=3.9 Score=31.76 Aligned_cols=49 Identities=14% Similarity=0.276 Sum_probs=28.0
Q ss_pred cCCccchhhhhhHHHHHHHHHHHHHhCCcc---chhhHHHHHHHH-HHhhhhcc
Q 025732 166 RTGPLYVSMFKPLAIVFSIVMDVVIVGDAF---CLGSLIGAMIIV-AGFYAVMW 215 (249)
Q Consensus 166 ~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~---~~~~~iG~~LIi-~gv~l~~~ 215 (249)
.....+++.+.|+.|+++.+++.++. ..+ .+..++++++-+ .|..+..+
T Consensus 64 ~~~~~~aa~l~Y~lPll~li~g~~l~-~~~~~~e~~~~l~~l~~l~~~~~~~~~ 116 (135)
T PF04246_consen 64 ESSLLKAAFLVYLLPLLALIAGAVLG-SYLGGSELWAILGGLLGLALGFLILRL 116 (135)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677888899988888887653 333 334444444433 34444433
No 103
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=67.03 E-value=8.6 Score=30.51 Aligned_cols=27 Identities=4% Similarity=0.194 Sum_probs=18.9
Q ss_pred hccCCccchhhhhhHHHHHHHHHHHHH
Q 025732 164 LSRTGPLYVSMFKPLAIVFSIVMDVVI 190 (249)
Q Consensus 164 l~~~g~~~~s~~~~l~Pi~a~l~~~l~ 190 (249)
+..-++-+++.+.|+.|.++.+.+.+.
T Consensus 69 i~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 69 IEEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667778888888877776654
No 104
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=66.90 E-value=40 Score=32.01 Aligned_cols=46 Identities=2% Similarity=0.156 Sum_probs=30.0
Q ss_pred chhhhhhHHHHHHHHHHHHHhCC-----ccchhhHHHHHHHHHHhhhhccc
Q 025732 171 YVSMFKPLAIVFSIVMDVVIVGD-----AFCLGSLIGAMIIVAGFYAVMWG 216 (249)
Q Consensus 171 ~~s~~~~l~Pi~a~l~~~l~lgE-----~~~~~~~iG~~LIi~gv~l~~~~ 216 (249)
...++..+.-+.=.++-++=-++ .++..|++...++++|+++..+.
T Consensus 225 lf~lYli~Ygi~RF~iEflR~d~~~~~~gl~~~Q~lSl~~il~gl~~~~~~ 275 (460)
T PRK13108 225 LFGFYVAFYCAGRFCVELLRDDPATLIAGIRINSFTSTFVFIGAVVYIILA 275 (460)
T ss_pred HHHHHHHHHHHHHHHhhhhccCchhhhcCccHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555442222 26889999999999998777653
No 105
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=66.35 E-value=27 Score=26.15 Aligned_cols=45 Identities=24% Similarity=0.248 Sum_probs=37.5
Q ss_pred hhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccc
Q 025732 174 MFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS 218 (249)
Q Consensus 174 ~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~ 218 (249)
.+.-+..+.++++.++.=|.+++.+.++|..+-+.|+.++...++
T Consensus 63 AYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 63 AYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 344566778889999999999999999999999999888777655
No 106
>PRK11469 hypothetical protein; Provisional
Probab=64.11 E-value=7.6 Score=32.20 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=28.8
Q ss_pred hhhhhHHHHHHHHHHHHHhCCccchhhHHHHHH-HHHHhhhhcc
Q 025732 173 SMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMI-IVAGFYAVMW 215 (249)
Q Consensus 173 s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~L-Ii~gv~l~~~ 215 (249)
+.+..+.|..+...+-.+-+-...+.+++|..+ ++.|..+..-
T Consensus 44 g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~e 87 (188)
T PRK11469 44 GAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMIIE 87 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445577888888888876555444667887655 5558776653
No 107
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=63.06 E-value=7.3 Score=31.24 Aligned_cols=22 Identities=5% Similarity=0.182 Sum_probs=14.2
Q ss_pred ccchhhhhhHHHHHHHHHHHHH
Q 025732 169 PLYVSMFKPLAIVFSIVMDVVI 190 (249)
Q Consensus 169 ~~~~s~~~~l~Pi~a~l~~~l~ 190 (249)
..+++.+.|+.|+++++.+.++
T Consensus 74 llkaa~lvYllPLl~li~ga~l 95 (154)
T PRK10862 74 LLRSALLVYMTPLVGLFLGAAL 95 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677787777766553
No 108
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=61.35 E-value=1.2e+02 Score=26.80 Aligned_cols=102 Identities=9% Similarity=-0.041 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCcccccc-chhHHHHHHHHHHHHHHH
Q 025732 77 GGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLG-LDIGLVAVLYSAVIGTGF 155 (249)
Q Consensus 77 G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~-~~~~~~~llylgv~~t~l 155 (249)
-..+.+.++.+-=...-+.|.+....+ +.-.+.+...+++++++.+. + +|... +..+|..++..|+ +.+.
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~vG-~~g~t~lRl~~aaLIll~l~----R---Pwr~r~~~~~~~~~~~yGv-sLg~ 83 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPLVG-AAGVTALRLAIAALILLALF----R---PWRRRLSKPQRLALLAYGV-SLGG 83 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccccC-hhhHHHHHHHHHHHHHHHHh----h---HHHhccChhhhHHHHHHHH-HHHH
Confidence 355666666665555566676666655 46778888888887776542 1 22211 1235777777786 5566
Q ss_pred HHHHHHHHhccCCccchhhhhhHHHHHHHHHH
Q 025732 156 RVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMD 187 (249)
Q Consensus 156 a~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~ 187 (249)
-..++|.++++++-..+-.+.++-|+.-.+++
T Consensus 84 MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~ 115 (292)
T COG5006 84 MNLLFYLSIERIPLGIAVAIEFTGPLAVALLS 115 (292)
T ss_pred HHHHHHHHHHhccchhhhhhhhccHHHHHHHh
Confidence 67888889999999999999999997655443
No 109
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=61.14 E-value=1.7 Score=31.68 Aligned_cols=27 Identities=22% Similarity=0.061 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHhcccccccccccCCceeeeeee
Q 025732 5 IPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFA 37 (249)
Q Consensus 5 ~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l 37 (249)
..+.+++.+.++++|+++.+ |++|+.+
T Consensus 66 g~v~~~~~~~~~f~E~~s~~------~~~gi~l 92 (93)
T PF00893_consen 66 GIVGVTLVGVFFFGESLSLS------KWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence 44557888999999999999 8887653
No 110
>PF15102 TMEM154: TMEM154 protein family
Probab=60.09 E-value=9.2 Score=30.40 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=9.6
Q ss_pred HHHHHHHHhhhhcccccccc
Q 025732 202 GAMIIVAGFYAVMWGKSKEE 221 (249)
Q Consensus 202 G~~LIi~gv~l~~~~~~~~~ 221 (249)
+++|++..++++.+.|||+.
T Consensus 68 LvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 68 LVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHheeEEeeccc
Confidence 34445555555555444333
No 111
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=59.49 E-value=94 Score=28.76 Aligned_cols=88 Identities=17% Similarity=0.221 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC---ccchhhhhhHHHHHHHHHHHHHhCCccc----------------hhhHHH
Q 025732 142 LVAVLYSAVIGTGFRVGLCTWCLSRTG---PLYVSMFKPLAIVFSIVMDVVIVGDAFC----------------LGSLIG 202 (249)
Q Consensus 142 ~~~llylgv~~t~la~~l~~~al~~~g---~~~~s~~~~l~Pi~a~l~~~l~lgE~~~----------------~~~~iG 202 (249)
|.++ ..|+++..+++..+.+..+|.+ |..+-..-.+-=+++.+..-++-.+... ..|++|
T Consensus 275 ~~A~-~iG~iag~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~~~l~~Ql~g 353 (399)
T PF00909_consen 275 WGAL-LIGAIAGLISYFGVSWLLKRLKIDDPVGAFAVHGVGGIWGTILTGLFASPEVNYSDGYGGLFYGNGRQLGIQLLG 353 (399)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHTS-HTTGHHHHCHHHHHHHHHHHHHHCCCHHCSS-SSTTHHHHHHHHHHHHHHH
T ss_pred HHHH-HhhhhHhhhhhhheecccceeEeccccceEeeeeccHHHHHHHHHHHhccccccccccccccCCchhHHHHHHHH
Confidence 4444 4667777777777765666654 5555555556668888888777776532 467777
Q ss_pred HHHHHHHhhhh---------ccccccccccccccCCC
Q 025732 203 AMIIVAGFYAV---------MWGKSKEEKTTEDCGLG 230 (249)
Q Consensus 203 ~~LIi~gv~l~---------~~~~~~~~~~~~~~~~~ 230 (249)
.+.++.-.... ...+-|-++|+|..|+.
T Consensus 354 ~~~~~~~~~~~s~i~~~~l~~~~~LRv~~~~E~~GlD 390 (399)
T PF00909_consen 354 IVVILAWSFVVSYIIFKILKKFGGLRVSEEDERVGLD 390 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-SB--HHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCHHHHhhCCC
Confidence 77664422221 12345666777777764
No 112
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=57.39 E-value=15 Score=27.67 Aligned_cols=56 Identities=16% Similarity=0.208 Sum_probs=43.6
Q ss_pred HHHHHHhccCCccchhhhh-hHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhh
Q 025732 158 GLCTWCLSRTGPLYVSMFK-PLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAV 213 (249)
Q Consensus 158 ~l~~~al~~~g~~~~s~~~-~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~ 213 (249)
.+|++-+++.+-+.+..+. .+.-.+..+++...-.|...-..++|..+++.|+++.
T Consensus 67 aly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 67 ALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 5677788888877766554 5577889999998655566678999999999998764
No 113
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=56.66 E-value=1.5e+02 Score=26.68 Aligned_cols=127 Identities=13% Similarity=0.119 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHH-Hh-------chhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHHH
Q 025732 88 NSAWFILQALILR-KF-------AAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGL 159 (249)
Q Consensus 88 ~a~y~v~~k~~~~-~~-------~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~l 159 (249)
|-.+-++++|+.. .| .++..+.+-|.+.+.+.... .+.... .+ ......|+-.-+.++ ...++-.+
T Consensus 26 ~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~--~l~~~k-~~--~~~~apl~~y~~is~-tn~~s~~~ 99 (327)
T KOG1581|consen 26 FLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYA--MLKWWK-KE--LSGVAPLYKYSLISF-TNTLSSWC 99 (327)
T ss_pred HHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHH--HHhccc-cc--CCCCCchhHHhHHHH-HhhcchHH
Confidence 3344566666532 23 23455666666666555422 222211 11 111234555555664 45566678
Q ss_pred HHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccccc
Q 025732 160 CTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKE 220 (249)
Q Consensus 160 ~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~ 220 (249)
.+-++++++=-...+.-..--+-.++++.++.+.+.++..++=+.+|-+|+.+....++..
T Consensus 100 ~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 100 GYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 8889999973333444444445557899999999999999999999999998887765544
No 114
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=54.48 E-value=66 Score=25.25 Aligned_cols=73 Identities=12% Similarity=0.152 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHH-HHHHhhhhcccccc
Q 025732 141 GLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMI-IVAGFYAVMWGKSK 219 (249)
Q Consensus 141 ~~~~llylgv~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~L-Ii~gv~l~~~~~~~ 219 (249)
.+.....+.+.+.+.-|..-.+..||.|.++.+... -..+.+.+.+++. + +|..+ -+.|.++...-++|
T Consensus 32 ~l~~~~~l~~l~~~~d~~~~~~~ak~~G~s~~~~~g---a~iG~IvG~f~~~-p------~G~iiG~~~Ga~l~El~~~~ 101 (140)
T PF04306_consen 32 FLAILAVLALLGEVLDYLAGAYGAKRFGASRWGIWG---AIIGGIVGFFVLP-P------LGLIIGPFLGAFLGELLRGK 101 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH---HHHHHHHHHHHhh-H------HHHHHHHHHHHHHHHHHhCC
Confidence 355556667788899999999999999999988874 4556666666543 1 14333 35566766665544
Q ss_pred cccc
Q 025732 220 EEKT 223 (249)
Q Consensus 220 ~~~~ 223 (249)
+.++
T Consensus 102 ~~~~ 105 (140)
T PF04306_consen 102 DFRR 105 (140)
T ss_pred CHHH
Confidence 4444
No 115
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=50.45 E-value=85 Score=27.61 Aligned_cols=46 Identities=9% Similarity=0.237 Sum_probs=30.5
Q ss_pred chhhhhhHHHHHHHHHHHHHhCC---------ccchhhHHHHHHHHHHhhhhccc
Q 025732 171 YVSMFKPLAIVFSIVMDVVIVGD---------AFCLGSLIGAMIIVAGFYAVMWG 216 (249)
Q Consensus 171 ~~s~~~~l~Pi~a~l~~~l~lgE---------~~~~~~~iG~~LIi~gv~l~~~~ 216 (249)
....+..+..+.=.+...+=-++ .++..|++...+++.|+.+..+.
T Consensus 213 ~~~~yli~Y~~~Rf~iEf~R~~~~~~~~~~~~~lt~~Q~~sl~~i~~g~~~~~~~ 267 (278)
T TIGR00544 213 IFGVYLIGYGIFRFIIEGLREPDLMLTEFSFLNISMGQILSLLMIAGILIIMLLA 267 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhccccccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666553232 26889999999999998776543
No 116
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=47.06 E-value=5.7 Score=30.23 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhh
Q 025732 4 LIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFV 44 (249)
Q Consensus 4 ~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~l 44 (249)
+.=++|++.++++.+|..+++ .++|+++.+.|+.+
T Consensus 77 l~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 77 LAFVFTALTGWLLGEEVISRR------TWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeee
Confidence 344577888888877777777 89999999988865
No 117
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=45.14 E-value=2.4e+02 Score=25.72 Aligned_cols=177 Identities=14% Similarity=0.097 Sum_probs=96.4
Q ss_pred CCceeeeeeeehhhhhhhhhhcCCCCcCCCCCCCCCccccCCCCcchhHHHHHHHHHHHHHHHHHHHHH---HHHH----
Q 025732 28 SQAKSLGTFASIGGAFVVTFYKGPPLIGELSHSGSPRRLLLSPQLSWILGGFFLAAEAFMNSAWFILQA---LILR---- 100 (249)
Q Consensus 28 ~~~~~~gi~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~y~v~~k---~~~~---- 100 (249)
.+...+|++++++|+.+.... |. .+ + . +. +.+..+.+.-.|.++++.|.+.=|..+.-.. -..+
T Consensus 134 g~~vL~Gv~v~LiGIai~g~A-G~-~K-e--~-~~---~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a 204 (344)
T PF06379_consen 134 GQIVLLGVAVCLIGIAICGKA-GS-MK-E--K-EL---GEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVA 204 (344)
T ss_pred chhhhhHHHHHHHHHHHHhHH-HH-hh-h--h-hh---ccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 445889999999999988532 21 11 0 0 00 0111233456899998888766555544322 1111
Q ss_pred HhchhH----HHHHHHHHHHHHHHHHHHHHhc---cCCc---cccccch---hHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 025732 101 KFAAVL----IIMFYLFFFNTILSTAFALIVV---SEPS---DWKLGLD---IGLVAVLYSAVIGTGFRVGLCTWCLSRT 167 (249)
Q Consensus 101 ~~~~~~----~~~~~~~l~g~i~l~~~al~~~---~~~~---~~~~~~~---~~~~~llylgv~~t~la~~l~~~al~~~ 167 (249)
...+++ ......+.-|.+..+..++... ++.+ ++....+ ......+..|+ -=..++..|.++-.++
T Consensus 205 ~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~-lWy~qfffYg~G~s~l 283 (344)
T PF06379_consen 205 AGVNPLYANLPVYVVVLWGGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGV-LWYSQFFFYGMGESKL 283 (344)
T ss_pred cCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 000112 1223334446666677765532 1221 2211111 12222222333 2467888888888888
Q ss_pred Ccc----chhhhhhHHHHHHHHHHHHHhCCc------cchhhHHHHHHHHHHhhhhcc
Q 025732 168 GPL----YVSMFKPLAIVFSIVMDVVIVGDA------FCLGSLIGAMIIVAGFYAVMW 215 (249)
Q Consensus 168 g~~----~~s~~~~l~Pi~a~l~~~l~lgE~------~~~~~~iG~~LIi~gv~l~~~ 215 (249)
|.. .-.+.+.+..+++-+++.+ ++|- .-...++|.++++.++.++-.
T Consensus 284 g~~~~~~sW~i~ma~~vl~snvwGl~-lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 284 GASGPFSSWAIHMALIVLFSNVWGLI-LKEWKGASKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHH-HHHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 844 3445666677888888886 6773 223567888888888777644
No 118
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=44.96 E-value=7.3 Score=34.86 Aligned_cols=130 Identities=12% Similarity=0.065 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH-HHHHhcc-------CC---ccccccchhHHHHHHHHHH
Q 025732 82 AAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTA-FALIVVS-------EP---SDWKLGLDIGLVAVLYSAV 150 (249)
Q Consensus 82 l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~-~al~~~~-------~~---~~~~~~~~~~~~~llylgv 150 (249)
+++.+||+.+-..+|...++... ...+-|=+.++.++... +++..+. .+ .|........+...+.-|+
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~-~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGv 80 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRL-PQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGV 80 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCc-cceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhH
Confidence 56788999988887776554321 12233333333333222 2222221 11 1222211122333333333
Q ss_pred HHHHHHHHHHHHHhccCCccchhhhhh-HHHHHHHHHHHHHhCCccc--hhhHHHHHHHHHHhhhhc
Q 025732 151 IGTGFRVGLCTWCLSRTGPLYVSMFKP-LAIVFSIVMDVVIVGDAFC--LGSLIGAMIIVAGFYAVM 214 (249)
Q Consensus 151 ~~t~la~~l~~~al~~~g~~~~s~~~~-l~Pi~a~l~~~l~lgE~~~--~~~~iG~~LIi~gv~l~~ 214 (249)
.--++..+..+++...|-+.+-++.. +.-++++++.|+ ++.+.+ ..-+.|..+++.++.+-.
T Consensus 81 -vfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga 145 (336)
T PF07168_consen 81 -VFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGA 145 (336)
T ss_pred -hhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHH
Confidence 34566677777777777655443332 233456666665 466665 356778888888776654
No 119
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=44.34 E-value=26 Score=31.14 Aligned_cols=67 Identities=12% Similarity=0.236 Sum_probs=51.2
Q ss_pred HHHHHHHhccC-CccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccccccccc
Q 025732 157 VGLCTWCLSRT-GPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKT 223 (249)
Q Consensus 157 ~~l~~~al~~~-g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~~~~ 223 (249)
-.+.+++++-- +--.--++..-.++..++.+|+++|.+-+..|+....++-.|+++....+.++-+.
T Consensus 78 nv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 78 NVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred eeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 34556665533 33333456666788999999999999999999999999999999988877666555
No 120
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=42.71 E-value=1.2e+02 Score=26.60 Aligned_cols=47 Identities=6% Similarity=0.163 Sum_probs=31.9
Q ss_pred cchhhhhhHHHHHHHHHHHHHhCC-----ccchhhHHHHHHHHHHhhhhccc
Q 025732 170 LYVSMFKPLAIVFSIVMDVVIVGD-----AFCLGSLIGAMIIVAGFYAVMWG 216 (249)
Q Consensus 170 ~~~s~~~~l~Pi~a~l~~~l~lgE-----~~~~~~~iG~~LIi~gv~l~~~~ 216 (249)
...+.+..+..+.=.+...+=-++ -++..|+++..+++.|+.+..+.
T Consensus 205 ~~f~~yl~~Y~~~Rf~iEf~R~~~~~~~~~ls~~Q~~sl~~i~~g~~~~~~~ 256 (269)
T PRK12437 205 EVFALYLIWYSIGRFFIEGLRTDSLMLFGWLRIAQVISIPLIIIGIILIIYR 256 (269)
T ss_pred hhHHHHHHHHHHHHHhhhhhccCchhhhcChhHHHHHHHHHHHHHHHHHHHH
Confidence 344566666777666666653222 26789999999999998766443
No 121
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=42.15 E-value=2.9e+02 Score=25.74 Aligned_cols=90 Identities=12% Similarity=0.086 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC---CccchhhhhhHHHHHHHHHHHHHhCCcc---------------chhhHHHH
Q 025732 142 LVAVLYSAVIGTGFRVGLCTWCLSRT---GPLYVSMFKPLAIVFSIVMDVVIVGDAF---------------CLGSLIGA 203 (249)
Q Consensus 142 ~~~llylgv~~t~la~~l~~~al~~~---g~~~~s~~~~l~Pi~a~l~~~l~lgE~~---------------~~~~~iG~ 203 (249)
|.++ ..|+++..+++..+.+..++. +|..+-..=-+-=+++.+..-++-.+.. -..|++|.
T Consensus 280 ~~A~-viG~iag~~~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~~~~~g~~~~~~~~~l~~Ql~g~ 358 (403)
T TIGR00836 280 WGAI-IIGLVAGVLCYLAVSKLKKKLKIDDPLDAFAVHGVGGIWGLIATGLFAAPKVGGVGTGGLLGGNGKQLGVQLIGI 358 (403)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhhhhHHHHHHHHHHhcccccccccCCccccCcHHHHHHHHHHH
Confidence 4444 567777777776665455544 3444433333344566665555543321 12488887
Q ss_pred HHHHHHhh----hhc-----cccccccccccccCCCCC
Q 025732 204 MIIVAGFY----AVM-----WGKSKEEKTTEDCGLGSV 232 (249)
Q Consensus 204 ~LIi~gv~----l~~-----~~~~~~~~~~~~~~~~~~ 232 (249)
+.++.=.. +.. ...-|-.+|+|.-|+...
T Consensus 359 ~~~~~~s~~~~~ii~~il~~~~~lRv~~e~E~~GlD~~ 396 (403)
T TIGR00836 359 AAIIAWAFVVTFIILKILDKTIGLRVSEEEEKIGLDLA 396 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCHHHHHhCCChh
Confidence 76543111 111 123466677777776543
No 122
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=40.66 E-value=39 Score=28.33 Aligned_cols=46 Identities=17% Similarity=0.353 Sum_probs=29.0
Q ss_pred ccchhhhhhHHHHHHHHHHHHHhCCccc-hhhHHHHH-HHHHHhhhhc
Q 025732 169 PLYVSMFKPLAIVFSIVMDVVIVGDAFC-LGSLIGAM-IIVAGFYAVM 214 (249)
Q Consensus 169 ~~~~s~~~~l~Pi~a~l~~~l~lgE~~~-~~~~iG~~-LIi~gv~l~~ 214 (249)
+...+.+..+.|..+..++..+-+--.. +.+++|++ |++.|+.+..
T Consensus 33 ~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 33 NLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 4455666667888888888876543333 34666654 4666877664
No 123
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=40.22 E-value=2.2e+02 Score=23.69 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=18.7
Q ss_pred HHHHHHHhCCccchhhHHHHHHHHH
Q 025732 184 IVMDVVIVGDAFCLGSLIGAMIIVA 208 (249)
Q Consensus 184 ~l~~~l~lgE~~~~~~~iG~~LIi~ 208 (249)
-.+|..++++-.-+..++|..|.++
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvA 157 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVA 157 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457777888888888999887643
No 124
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=39.06 E-value=13 Score=28.77 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025732 143 VAVLYSAVIGTGFRVGL 159 (249)
Q Consensus 143 ~~llylgv~~t~la~~l 159 (249)
..++..|++.|.++|.+
T Consensus 57 ~vili~GvvvT~vays~ 73 (129)
T PF15099_consen 57 VVILIAGVVVTAVAYSF 73 (129)
T ss_pred HHHHHHhhHhheeeEee
Confidence 35667788888888877
No 125
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=38.38 E-value=2e+02 Score=22.82 Aligned_cols=66 Identities=14% Similarity=0.218 Sum_probs=43.5
Q ss_pred HHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccccccccccc
Q 025732 157 VGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTED 226 (249)
Q Consensus 157 ~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~~~~~~~ 226 (249)
-.+..+.+++-|..+.++-....-+ .+++..---+++.++.|..++..=+.++..+...++++.+|
T Consensus 62 ~G~~~~lm~~kgi~rm~lG~~vm~~----~~~llw~ggv~~~~IAg~~lv~filmvVLiPEpg~QRS~~D 127 (144)
T PF01350_consen 62 LGVFWFLMRRKGIGRMSLGMLVMAV----AGYLLWMGGVPPGQIAGVLLVFFILMVVLIPEPGKQRSQQD 127 (144)
T ss_pred HHHHHhhhcCCCcchhhHHHHHHHH----HHHHHHhcCCcHHHhHHHHHHHHHHHHhcccCCCCcCCccc
Confidence 4455567788888888876643332 33333444488999999999888877777765545554443
No 126
>COG2034 Predicted membrane protein [Function unknown]
Probab=38.14 E-value=35 Score=24.53 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHhhhhccccccccc-cccccC
Q 025732 197 LGSLIGAMIIVAGFYAVMWGKSKEEK-TTEDCG 228 (249)
Q Consensus 197 ~~~~iG~~LIi~gv~l~~~~~~~~~~-~~~~~~ 228 (249)
...++|..+++.|+.+..+.+.+++. ++|+-|
T Consensus 13 ~li~iGf~LifLGi~l~~~~~~~~~~~~~E~gG 45 (85)
T COG2034 13 ILIFIGFLLIFLGIVLPAFSPFAESGSSVEYGG 45 (85)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccccCCccccce
Confidence 35688999999998888776544433 555554
No 127
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=37.81 E-value=2.7e+02 Score=26.04 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhccccc
Q 025732 177 PLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKS 218 (249)
Q Consensus 177 ~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~ 218 (249)
...+..+.++..+..=-.--....+|.++++.|+.+..+.++
T Consensus 391 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~ 432 (468)
T TIGR03810 391 LLIGLVALLYAVWLIYAAGLKYLLLSAILYAPGIYFYARARK 432 (468)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555544443332222223578888888899877765443
No 128
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=37.49 E-value=3.8e+02 Score=25.77 Aligned_cols=40 Identities=10% Similarity=-0.055 Sum_probs=20.2
Q ss_pred hhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhh
Q 025732 173 SMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYA 212 (249)
Q Consensus 173 s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l 212 (249)
++..-..|+-+.++|.+.-.-.+.....++++.++.+..+
T Consensus 350 ~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~ 389 (524)
T PF05977_consen 350 MVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALI 389 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 3444457777888887643333333333444434344333
No 129
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=36.04 E-value=35 Score=20.75 Aligned_cols=32 Identities=16% Similarity=0.351 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhCCccchhhHHHHHHHHHHhh
Q 025732 180 IVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFY 211 (249)
Q Consensus 180 Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~ 211 (249)
|+.|.+.|.+++=-+=-...++|.-+|+.|+.
T Consensus 1 pi~aliaGiLiLi~PrllnyiVaiyLI~~G~l 32 (39)
T PF11295_consen 1 PILALIAGILILIMPRLLNYIVAIYLIVIGLL 32 (39)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888887766555667788888888864
No 130
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=35.02 E-value=1.6e+02 Score=25.61 Aligned_cols=46 Identities=13% Similarity=0.301 Sum_probs=31.8
Q ss_pred chhhhhhHHHHHHHHHHHHHhCCc-----cchhhHHHHHHHHHHhhhhccc
Q 025732 171 YVSMFKPLAIVFSIVMDVVIVGDA-----FCLGSLIGAMIIVAGFYAVMWG 216 (249)
Q Consensus 171 ~~s~~~~l~Pi~a~l~~~l~lgE~-----~~~~~~iG~~LIi~gv~l~~~~ 216 (249)
....+.....+.=.+...+--++. ++..|+++..+++.|+.+..+.
T Consensus 208 ~f~~yl~~Y~~~Rf~iE~~R~~~~~~~~~ls~~Q~isl~~~~~gi~~~~~~ 258 (269)
T PRK00052 208 VFGLYLIGYGLGRFFIEFFREPDAQLGGGLTMGQILSIPMILLGIILLIWA 258 (269)
T ss_pred HHHHHHHHHHHHHHhhhhhccCchhhccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666665543332 5889999999999998776554
No 131
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=33.72 E-value=64 Score=18.23 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=8.7
Q ss_pred chhhHHHHHHHHHHhhh
Q 025732 196 CLGSLIGAMIIVAGFYA 212 (249)
Q Consensus 196 ~~~~~iG~~LIi~gv~l 212 (249)
.+..++|.+++..+.++
T Consensus 11 ~~~~~~G~~l~~~~~~~ 27 (34)
T TIGR01167 11 SLLLLLGLLLLGLGGLL 27 (34)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566666444444333
No 132
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=29.94 E-value=5.5e+02 Score=25.34 Aligned_cols=21 Identities=19% Similarity=0.282 Sum_probs=16.9
Q ss_pred cCCceeeeeeeehhhhhhhhh
Q 025732 27 SSQAKSLGTFASIGGAFVVTF 47 (249)
Q Consensus 27 ~~~~~~~gi~l~~~Gv~ll~~ 47 (249)
-++..++|.++...|+.++..
T Consensus 236 l~~lD~IG~~L~~~Gl~LfLl 256 (599)
T PF06609_consen 236 LKELDWIGIFLFIAGLALFLL 256 (599)
T ss_pred HHHhhHHHHHHHHHHHHHHHH
Confidence 456679999999999987753
No 133
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=29.38 E-value=61 Score=26.38 Aligned_cols=19 Identities=21% Similarity=0.010 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025732 78 GFFLAAEAFMNSAWFILQA 96 (249)
Q Consensus 78 ~~l~l~aa~~~a~y~v~~k 96 (249)
....+.+++.|++..++..
T Consensus 134 v~~gf~a~lGfslvmvlfA 152 (193)
T COG4657 134 VVYGFGAALGFSLVMVLFA 152 (193)
T ss_pred HHHHhhhHhhHHHHHHHHH
Confidence 4444455555555444433
No 134
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=29.21 E-value=1e+02 Score=30.12 Aligned_cols=41 Identities=10% Similarity=0.162 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhh
Q 025732 6 PAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 46 (249)
Q Consensus 6 Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~ 46 (249)
|-|.++-.++.-+.....-..++..+++|.+++.+-.++++
T Consensus 27 p~WA~~tv~iV~qp~~G~~~~k~~~R~~GT~iGa~~~~~lv 67 (650)
T PF04632_consen 27 PYWAAMTVFIVSQPSSGASLSKGLYRLIGTLIGAAAGLLLV 67 (650)
T ss_pred cHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666665554444444556667788777766555553
No 135
>COG1971 Predicted membrane protein [Function unknown]
Probab=29.16 E-value=73 Score=26.52 Aligned_cols=43 Identities=12% Similarity=0.215 Sum_probs=27.5
Q ss_pred hhhhhHHHHHHHHHHHHHhCCccchhhHHHHHH-HHHHhhhhcc
Q 025732 173 SMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMI-IVAGFYAVMW 215 (249)
Q Consensus 173 s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~L-Ii~gv~l~~~ 215 (249)
+.+..+.|..+...+.++=+-.=.+.+|+|.++ ++.|+.+..-
T Consensus 44 G~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e 87 (190)
T COG1971 44 GVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIE 87 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788888887776433344667777555 5678776653
No 136
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=29.13 E-value=46 Score=23.90 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=21.3
Q ss_pred CccchhhHHHHHHHHHHhhhhccccccc
Q 025732 193 DAFCLGSLIGAMIIVAGFYAVMWGKSKE 220 (249)
Q Consensus 193 E~~~~~~~iG~~LIi~gv~l~~~~~~~~ 220 (249)
-.+++..++|.+++++|+.+...++-+.
T Consensus 3 ~~~~~~~iLgi~l~~~~~~Ly~lr~~~P 30 (84)
T PF07444_consen 3 FGFGPSYILGIILILGGLALYFLRFFRP 30 (84)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 3578999999999999988776554333
No 137
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=29.12 E-value=4.3e+02 Score=26.89 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=13.2
Q ss_pred chhHHHHHHHHHHhcccc
Q 025732 3 NLIPAFTFVLAIIFRLEK 20 (249)
Q Consensus 3 ~~~Pi~~~ils~l~~~e~ 20 (249)
.++|+-.++++...+.+|
T Consensus 18 ~l~PFg~af~~a~~~~~~ 35 (764)
T TIGR02865 18 PMAPFGIAFLAAVLLAKK 35 (764)
T ss_pred CCCchHHHHHHHHHHhhc
Confidence 478999988888765443
No 138
>CHL00022 ndhC NADH dehydrogenase subunit 3
Probab=28.74 E-value=83 Score=23.99 Aligned_cols=21 Identities=10% Similarity=0.245 Sum_probs=14.3
Q ss_pred ccccccccccCCCCCCCcccc
Q 025732 218 SKEEKTTEDCGLGSVNSSREK 238 (249)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~ 238 (249)
++++.+.=.||..+.+++|.+
T Consensus 37 ~~~k~s~yECGf~p~~~~~~~ 57 (120)
T CHL00022 37 GPEKLSSYESGIEPMGDAWLQ 57 (120)
T ss_pred CcccCCCcCCCCCCCCCCCCc
Confidence 345555667999887776654
No 139
>PRK06073 NADH dehydrogenase subunit A; Validated
Probab=28.13 E-value=85 Score=24.22 Aligned_cols=35 Identities=6% Similarity=-0.075 Sum_probs=20.8
Q ss_pred HHHHhhhhccccccccccccccCCCCCCCcccccc
Q 025732 206 IVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVP 240 (249)
Q Consensus 206 Ii~gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (249)
+..+-.+..++++++|.+.=.||.....+.|.+.+
T Consensus 25 l~l~~ll~p~~~~~~K~~~YEcG~~p~g~~r~~f~ 59 (124)
T PRK06073 25 YKLLKLILPSKPTPLKVSRYEAGNPPTGPAKLWLP 59 (124)
T ss_pred HHHHHHhcCCCCCcccCCcccCCCCCCCCCCcccc
Confidence 33333333334445555667899988877777554
No 140
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=27.87 E-value=93 Score=29.42 Aligned_cols=60 Identities=12% Similarity=0.110 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHhCC-ccchhhHHHHHHHHHHhhhhccccccccccccccCCCCCCCccccccc
Q 025732 177 PLAIVFSIVMDVVIVGD-AFCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPL 241 (249)
Q Consensus 177 ~l~Pi~a~l~~~l~lgE-~~~~~~~iG~~LIi~gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (249)
.+.|+++.+ +++..+- .-......|++-++.|+++....| ...|+|||.++..-|+.-|-
T Consensus 167 al~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~r----d~Pqs~GLP~ie~~~~d~~e 227 (448)
T COG2271 167 ALAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLR----DRPQSEGLPPIEEYRGDPLE 227 (448)
T ss_pred chHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhC----CCccccCCCCHHHhhcCchh
Confidence 355666655 5555543 233345667777777877655433 34577898887655544333
No 141
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=27.83 E-value=1.4e+02 Score=21.63 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhc
Q 025732 140 IGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVM 214 (249)
Q Consensus 140 ~~~~~llylgv~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~ 214 (249)
..|...+.+|++..++....-+|.-... +.| ..+-=+|...+|..++++|+.+..
T Consensus 30 p~W~~p~m~~lmllGL~WiVvyYi~~~~----------i~p----------i~~lG~WN~~IGfg~~~~Gf~mt~ 84 (87)
T PF06781_consen 30 PRWYAPLMLGLMLLGLLWIVVYYISGGQ----------IPP----------IPDLGNWNLAIGFGLMIVGFLMTM 84 (87)
T ss_pred CccHHHHHHHHHHHHHHHHhhhhcccCC----------CCC----------cccccchHHHHHHHHHHHHHHHHc
Confidence 4577777888888788777777644433 011 111126788999999999987754
No 142
>MTH00092 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=27.49 E-value=90 Score=23.45 Aligned_cols=36 Identities=14% Similarity=0.303 Sum_probs=20.6
Q ss_pred HHHHHHhhhhccccccccccccccCCCCCCCccccc
Q 025732 204 MIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKV 239 (249)
Q Consensus 204 ~LIi~gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (249)
++...+..+..+++.+++.+.=.||..+.+++|.+.
T Consensus 17 ~l~~l~~~l~~~~~~~~K~s~yECGf~p~~~~r~~F 52 (111)
T MTH00092 17 LLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSF 52 (111)
T ss_pred HHHHHHHHhCcCCCCcccCCccCCCCCCCCCccCcc
Confidence 333344333333334555566789998887777643
No 143
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=27.40 E-value=2.4e+02 Score=24.13 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=27.5
Q ss_pred CccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHH
Q 025732 168 GPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVA 208 (249)
Q Consensus 168 g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~ 208 (249)
..+...+.....-++..+....++|.+++...+.|.+++++
T Consensus 122 r~~l~v~~~ip~~l~~~~~~l~~~g~~ln~~sl~gli~~iG 162 (246)
T TIGR00966 122 RFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLTIIG 162 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHH
Confidence 34444445555556666677777899999888888775544
No 144
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=26.93 E-value=47 Score=25.62 Aligned_cols=12 Identities=42% Similarity=0.528 Sum_probs=0.0
Q ss_pred cccccccccccc
Q 025732 236 REKVPLLQNRIE 247 (249)
Q Consensus 236 ~~~~~~~~~~~~ 247 (249)
.+.+|+=--.+|
T Consensus 107 d~~~p~~~~~~~ 118 (122)
T PF01102_consen 107 DTDVPLSSVEIE 118 (122)
T ss_dssp ------------
T ss_pred CCCCCcceeeec
Confidence 466776544443
No 145
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=26.90 E-value=1.6e+02 Score=22.62 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCCc
Q 025732 147 YSAVIGTGFRVGLCTWCLSRTGP 169 (249)
Q Consensus 147 ylgv~~t~la~~l~~~al~~~g~ 169 (249)
++|+++|+++...-+..+...+.
T Consensus 67 ~lGLlGTv~Gmi~~f~~l~~~~~ 89 (139)
T PF01618_consen 67 LLGLLGTVIGMIEAFQALAETGS 89 (139)
T ss_pred HHHHHHHHHHHHHHHHHHhcccC
Confidence 57888999998888888876655
No 146
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=26.77 E-value=85 Score=20.90 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=24.4
Q ss_pred ccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHH
Q 025732 169 PLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMII 206 (249)
Q Consensus 169 ~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LI 206 (249)
+...+.+..+.|..+..++..+-+..-+..+++|+++.
T Consensus 26 ~~~ig~~~~~~~~~G~~~G~~~~~~~~~~~~~igg~iL 63 (67)
T PF02659_consen 26 ALIIGIFQFIMPLLGLLLGRRLGRFIGSYAEWIGGIIL 63 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777788888888766644445667776553
No 147
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=26.55 E-value=52 Score=20.61 Aligned_cols=16 Identities=19% Similarity=0.187 Sum_probs=7.9
Q ss_pred cchhhHHHHHHHHHHh
Q 025732 195 FCLGSLIGAMIIVAGF 210 (249)
Q Consensus 195 ~~~~~~iG~~LIi~gv 210 (249)
++|...+=.++|+.|+
T Consensus 2 p~wlt~iFsvvIil~I 17 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGI 17 (49)
T ss_pred chHHHHHHHHHHHHHH
Confidence 3455444445555554
No 148
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=25.21 E-value=1.6e+02 Score=21.72 Aligned_cols=18 Identities=11% Similarity=0.514 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHhhhhccc
Q 025732 199 SLIGAMIIVAGFYAVMWG 216 (249)
Q Consensus 199 ~~iG~~LIi~gv~l~~~~ 216 (249)
.++|.++++-+.+...|+
T Consensus 49 If~Gi~lMlPAav~ivWR 66 (96)
T PF07214_consen 49 IFVGIGLMLPAAVNIVWR 66 (96)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666665555554
No 149
>PRK07928 NADH dehydrogenase subunit A; Validated
Probab=25.00 E-value=1e+02 Score=23.46 Aligned_cols=19 Identities=11% Similarity=0.401 Sum_probs=13.0
Q ss_pred ccccccccccCCCCCCCcc
Q 025732 218 SKEEKTTEDCGLGSVNSSR 236 (249)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~ 236 (249)
.+++.+.=.||..+.++++
T Consensus 34 ~~~K~s~yECGf~p~~~~~ 52 (119)
T PRK07928 34 NRAKLEAYECGIEPTPQPA 52 (119)
T ss_pred CcccCCccCCCCCCCCCcc
Confidence 3455566679998877753
No 150
>MTH00136 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=24.50 E-value=1.1e+02 Score=23.11 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=14.3
Q ss_pred ccccccccccCCCCCCCcccc
Q 025732 218 SKEEKTTEDCGLGSVNSSREK 238 (249)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~ 238 (249)
.+++.+.=.||..+.++.|..
T Consensus 31 ~~~K~s~yECGf~p~~~~~~~ 51 (116)
T MTH00136 31 DHEKLSPYECGFDPLGSARLP 51 (116)
T ss_pred CcCCCccccCCCCCCCCcccc
Confidence 345555667999887777654
No 151
>TIGR00304 conserved hypothetical protein TIGR00304. The member of this family from Pyrococcus horikoshii scores only 13.91 bits, largely because it is at least 15 residues shorter than other members of this family of small proteins and is penalized for not matching to the N-terminal section of the model. Cutoff scores are set so this hit is between noise and trusted cutoffs.
Probab=24.20 E-value=79 Score=22.32 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhhh
Q 025732 200 LIGAMIIVAGFYA 212 (249)
Q Consensus 200 ~iG~~LIi~gv~l 212 (249)
++|..+++.|..+
T Consensus 15 fiGfilv~lG~~l 27 (77)
T TIGR00304 15 VIGFLLTFLGGAL 27 (77)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555544
No 152
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=24.10 E-value=5e+02 Score=23.91 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHh-----CCccchhhHHHHHHHHHHhhhhcc
Q 025732 176 KPLAIVFSIVMDVVIV-----GDAFCLGSLIGAMIIVAGFYAVMW 215 (249)
Q Consensus 176 ~~l~Pi~a~l~~~l~l-----gE~~~~~~~iG~~LIi~gv~l~~~ 215 (249)
....|+++.+.+..++ .++.. ..+.+.++++.|+.+...
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~y~~ 433 (445)
T PRK11357 390 FGLMTTLAIASSLILVASTFVWAPIP-GLICAVIVIATGLPAYAF 433 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCcHH-HHHHHHHHHHHhhhHHhh
Confidence 3566777776666553 44322 122466666677554443
No 153
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=24.09 E-value=4.3e+02 Score=25.40 Aligned_cols=53 Identities=21% Similarity=0.122 Sum_probs=33.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhchh--HHHHHHHHHHHHHHHHHH
Q 025732 71 QLSWILGGFFLAAEAFMNSAWFILQALILRKFAAV--LIIMFYLFFFNTILSTAF 123 (249)
Q Consensus 71 ~~~~~~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~--~~~~~~~~l~g~i~l~~~ 123 (249)
+.+..+|-+.+..+.+.=.+..++.+++.+..++. .....+....++....++
T Consensus 283 ~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~ 337 (493)
T KOG1330|consen 283 NATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPF 337 (493)
T ss_pred ccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHH
Confidence 34567788888888888888888888877655532 233344444454444444
No 154
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=23.12 E-value=5.3e+02 Score=22.82 Aligned_cols=35 Identities=11% Similarity=-0.004 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcc
Q 025732 181 VFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW 215 (249)
Q Consensus 181 i~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~ 215 (249)
+...+.+++.-.-..+...++++++.+.++.+...
T Consensus 353 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (399)
T PRK05122 353 ITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL 387 (399)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555542222333444454544555444433
No 155
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=23.11 E-value=3.1e+02 Score=20.10 Aligned_cols=42 Identities=12% Similarity=0.212 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHH
Q 025732 146 LYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVV 189 (249)
Q Consensus 146 lylgv~~t~la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l 189 (249)
.|+.++ +.+.+.+ ..++++++...--.+-.+.-+.+++++.+
T Consensus 9 ~y~t~~-~ii~~~l-Vq~IkkT~~v~~K~iPlIs~viGilLG~~ 50 (93)
T PF06946_consen 9 TYMTFL-SIITPAL-VQAIKKTKVVPNKWIPLISVVIGILLGAA 50 (93)
T ss_pred HHHHHH-HHHHHHH-HHHHHHhccCCcchhhHHHHHHHHHHHHH
Confidence 344432 3343332 55667665433333333344444444443
No 156
>PRK13727 conjugal transfer pilin chaperone TraQ; Provisional
Probab=22.78 E-value=80 Score=22.07 Aligned_cols=31 Identities=19% Similarity=0.338 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHhhhhc-cccccccccccccC
Q 025732 198 GSLIGAMIIVAGFYAVM-WGKSKEEKTTEDCG 228 (249)
Q Consensus 198 ~~~iG~~LIi~gv~l~~-~~~~~~~~~~~~~~ 228 (249)
.+++|..+++.|-+=+. .--.+..+|+++|+
T Consensus 43 aeiiav~lVl~GgYRilda~iarv~~eer~~~ 74 (80)
T PRK13727 43 AELIAAILVLFGAYRVLDAWIARVSREEREAL 74 (80)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 46788888888866432 11234444545554
No 157
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=22.34 E-value=73 Score=19.55 Aligned_cols=18 Identities=33% Similarity=0.835 Sum_probs=9.7
Q ss_pred HHHHHHHHHhhhhccccc
Q 025732 201 IGAMIIVAGFYAVMWGKS 218 (249)
Q Consensus 201 iG~~LIi~gv~l~~~~~~ 218 (249)
+|.++++.++++..|.+|
T Consensus 21 V~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred hHHHHHHHHHHhheEEec
Confidence 345555666666654443
No 158
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=22.31 E-value=3.5e+02 Score=23.85 Aligned_cols=44 Identities=14% Similarity=0.036 Sum_probs=31.7
Q ss_pred CCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhh
Q 025732 167 TGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFY 211 (249)
Q Consensus 167 ~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~ 211 (249)
.......+....--+...+....++|-+++...++|...+ .|..
T Consensus 150 ~~~~l~~ilal~~~v~~~lg~~~l~g~~l~~~siaall~l-iG~s 193 (289)
T PRK13022 150 WRFALGAIIALLHDVIITLGIFSLFQIEFDLTVIAALLTI-IGYS 193 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHH-HHHh
Confidence 4455666666666677777788888999998888777655 5543
No 159
>PRK10054 putative transporter; Provisional
Probab=22.27 E-value=5.8e+02 Score=22.93 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Q 025732 75 ILGGFFLAAEAFMNSAWFILQALILRKFAA 104 (249)
Q Consensus 75 ~~G~~l~l~aa~~~a~y~v~~k~~~~~~~~ 104 (249)
..|.+..+. .+..........++.++.++
T Consensus 44 ~~g~~~s~~-~~~~~~~~~~~G~l~Dr~g~ 72 (395)
T PRK10054 44 LIGYAMTIA-LTIGVVFSLGFGILADKFDK 72 (395)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhhcCc
Confidence 445544433 33344445556666666653
No 160
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=22.14 E-value=30 Score=30.80 Aligned_cols=11 Identities=18% Similarity=0.087 Sum_probs=0.0
Q ss_pred hhHHHHHHHHH
Q 025732 74 WILGGFFLAAE 84 (249)
Q Consensus 74 ~~~G~~l~l~a 84 (249)
.+.|.++.+++
T Consensus 105 LF~Gi~~l~l~ 115 (381)
T PF05297_consen 105 LFVGIVILFLC 115 (381)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 34565444333
No 161
>MTH00042 ND3 NADH dehydrogenase subunit 3; Validated
Probab=21.80 E-value=1.4e+02 Score=22.62 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=13.8
Q ss_pred cccccccccCCCCCCCcccc
Q 025732 219 KEEKTTEDCGLGSVNSSREK 238 (249)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~ 238 (249)
+++.+.=.||..+.+++|.+
T Consensus 32 ~~k~s~yECGf~~~~~~~~~ 51 (116)
T MTH00042 32 LEKSSPYECGFDPLNSARLP 51 (116)
T ss_pred cccCccccCCCCCCCccccC
Confidence 44555567999887777654
No 162
>PRK10655 potE putrescine transporter; Provisional
Probab=21.74 E-value=3.7e+02 Score=24.72 Aligned_cols=38 Identities=8% Similarity=0.044 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcc
Q 025732 178 LAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW 215 (249)
Q Consensus 178 l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~ 215 (249)
+.|+++.++.....-.........|.++++.|+.+...
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~ 426 (438)
T PRK10655 389 FIAFVGALYSFYALYSSGEEAMLYGSIVTFLGWTLYGL 426 (438)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45555655554433222222345677777777665533
No 163
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=21.74 E-value=6.4e+02 Score=23.23 Aligned_cols=47 Identities=13% Similarity=0.180 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccccccccc
Q 025732 175 FKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEKT 223 (249)
Q Consensus 175 ~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~~~~~~~ 223 (249)
.....+.++.++..+.+... .+..++..+.+.++....+.+|++++|
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (435)
T PRK10435 385 VSLICSVLGCVFCFIALMGA--SSFELAGTFIVSLIILMFYARKMHERQ 431 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 34567777777777766522 344555555555555555655555555
No 164
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=21.24 E-value=5.3e+02 Score=23.94 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=29.0
Q ss_pred ccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHH
Q 025732 169 PLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVA 208 (249)
Q Consensus 169 ~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~ 208 (249)
+...+.......++..+.-+.++|-+++...+.|.++.++
T Consensus 272 ~gl~a~ial~~~v~~~l~~~~l~g~~l~l~siaglil~iG 311 (397)
T TIGR01129 272 FGLIAAIALVINIVLILAILSAFGATLTLPGIAGLILTIG 311 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHhh
Confidence 4455555666666666666777899999999988877655
No 165
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=21.14 E-value=33 Score=31.50 Aligned_cols=41 Identities=27% Similarity=0.460 Sum_probs=34.4
Q ss_pred HHHhhhhccccccccccccccCCCCCCCccccccccccccc
Q 025732 207 VAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPLLQNRIE 247 (249)
Q Consensus 207 i~gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (249)
=.|.++...+.+-...+.-.||++.---+.|++|.|+.|+-
T Consensus 193 ~lg~YLgLTG~rl~GaD~~~~GlATHyv~S~~l~~Lee~L~ 233 (401)
T KOG1684|consen 193 YLGLYLGLTGQRLSGADALRCGLATHYVPSEKLPSLEERLL 233 (401)
T ss_pred HHHHhhhhccceecchHHHHhcchhhccchhhhhHHHHHHh
Confidence 34667777777777788899999999999999999999985
No 166
>PF10457 MENTAL: Cholesterol-capturing domain; InterPro: IPR019498 The following proteins share a conserved region called the MENTAL (MLN64 N-terminal) domain, composed of four transmembrane helices with three short intervening loops [, , ]: Animal MLN64 (metastatic lymph node 64), a late endosomal membrane protein containing a carboxyl-terminal cholesterol binding START domain (IPR002913 from INTERPRO). It is probably involved in intracellular cholesterol transport. Mammalian MENTHO (MLN64 N-terminal domain homologue), a late endosomal protein containing only the MENTAL domain. It is probably involved in cellular cholesterol homoeostasis. The ~170-amino acid MENTAL domain mediates MLN64 and MENTHO homo- and hetero- interactions, targets both proteins to late endosomes and binds cholesterol. The MENTAL domain might serve to maintain cholesterol at the membrane of late endosomes prior to its shuttle to cytoplasmic acceptor(s) through the START domain.
Probab=21.06 E-value=35 Score=27.89 Aligned_cols=17 Identities=41% Similarity=0.520 Sum_probs=13.3
Q ss_pred CCCcccccccccccccc
Q 025732 232 VNSSREKVPLLQNRIEE 248 (249)
Q Consensus 232 ~~~~~~~~~~~~~~~~~ 248 (249)
.+++.|..|+|+|+-++
T Consensus 144 ~~~~~er~pll~~~~~s 160 (171)
T PF10457_consen 144 VQSASERAPLLQPSPVS 160 (171)
T ss_pred ccCccccCcccCCCCCC
Confidence 56778999999988543
No 167
>MTH00018 ND3 NADH dehydrogenase subunit 3; Validated
Probab=20.56 E-value=1.4e+02 Score=22.37 Aligned_cols=21 Identities=14% Similarity=0.412 Sum_probs=14.4
Q ss_pred cccccccccccCCCCCCCccc
Q 025732 217 KSKEEKTTEDCGLGSVNSSRE 237 (249)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~ 237 (249)
+++++.+.=.||..+.++.|.
T Consensus 29 ~~~~k~s~yECGf~~~~~~~~ 49 (113)
T MTH00018 29 PDREKVSAYECGFDPFGFPGR 49 (113)
T ss_pred CCcccCcccccCcCCCccccc
Confidence 345556667899988776654
No 168
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=20.35 E-value=6.3e+02 Score=22.65 Aligned_cols=40 Identities=15% Similarity=0.278 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhCCccch-hhHHHHHHHHHHhhhhccccccc
Q 025732 180 IVFSIVMDVVIVGDAFCL-GSLIGAMIIVAGFYAVMWGKSKE 220 (249)
Q Consensus 180 Pi~a~l~~~l~lgE~~~~-~~~iG~~LIi~gv~l~~~~~~~~ 220 (249)
|+...+.+.+ ..--+.+ ..+.+..+++...+...|+++++
T Consensus 344 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (393)
T PRK11195 344 LLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLWRWHRR 384 (393)
T ss_pred HHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444 3333444 45556666655555555554433
Done!