Query 025732
Match_columns 249
No_of_seqs 147 out of 1251
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 16:24:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025732.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025732hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.2 4.6E-11 1.6E-15 93.2 7.3 70 148-217 35-105 (137)
2 3b5d_A Multidrug transporter E 98.9 9.5E-09 3.2E-13 77.1 8.9 70 148-217 35-105 (110)
3 3b5d_A Multidrug transporter E 95.4 0.0023 7.8E-08 47.4 -0.3 39 2-46 64-102 (110)
4 2i68_A Protein EMRE; transmemb 95.2 0.0037 1.3E-07 48.2 0.2 40 2-47 64-103 (137)
5 1pw4_A Glycerol-3-phosphate tr 33.2 2.2E+02 0.0076 24.0 12.6 26 145-170 353-378 (451)
6 3b9w_A Ammonium transporter fa 32.5 2.7E+02 0.0092 24.8 11.2 63 142-206 260-329 (407)
7 3l1l_A Arginine/agmatine antip 30.4 1.8E+02 0.0062 25.1 8.2 41 175-215 386-426 (445)
8 2jwa_A Receptor tyrosine-prote 24.4 24 0.00083 21.2 0.8 14 209-222 28-41 (44)
9 2l8s_A Integrin alpha-1; trans 17.8 84 0.0029 19.7 2.3 28 199-226 15-46 (54)
10 3o7q_A L-fucose-proton symport 16.8 4.6E+02 0.016 21.8 13.8 160 79-245 65-258 (438)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.17 E-value=4.6e-11 Score=93.20 Aligned_cols=70 Identities=19% Similarity=0.166 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHhccCCccchhhh-hhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccc
Q 025732 148 SAVIGTGFRVGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGK 217 (249)
Q Consensus 148 lgv~~t~la~~l~~~al~~~g~~~~s~~-~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~ 217 (249)
+++++++++|++|++++++.+++++..+ ..+.|+++++++++++||++++.+++|+++|++|+++.+..+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5778899999999999999999999998 899999999999999999999999999999999999987643
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.87 E-value=9.5e-09 Score=77.10 Aligned_cols=70 Identities=19% Similarity=0.166 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHhccCCccchhhh-hhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcccc
Q 025732 148 SAVIGTGFRVGLCTWCLSRTGPLYVSMF-KPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGK 217 (249)
Q Consensus 148 lgv~~t~la~~l~~~al~~~g~~~~s~~-~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~~~ 217 (249)
.++++.+++|.++.+++|+.+.+.+... ..+.|+++.+++++++||++++.+++|.++|+.|++..+..+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5667889999999999999999999887 799999999999999999999999999999999999887643
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=95.42 E-value=0.0023 Score=47.39 Aligned_cols=39 Identities=13% Similarity=0.182 Sum_probs=36.3
Q ss_pred CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhh
Q 025732 2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVT 46 (249)
Q Consensus 2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~ 46 (249)
.++.|++++++++++++|+++.+ |++|+++.+.|++++.
T Consensus 64 ~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 64 SGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIIN 102 (110)
T ss_pred hhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence 46789999999999999999999 9999999999999885
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=95.18 E-value=0.0037 Score=48.18 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=31.0
Q ss_pred CchhHHHHHHHHHHhcccccccccccCCceeeeeeeehhhhhhhhh
Q 025732 2 LNLIPAFTFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTF 47 (249)
Q Consensus 2 ~~~~Pi~~~ils~l~~~e~~~~~~~~~~~~~~gi~l~~~Gv~ll~~ 47 (249)
.++.|++++++++++++|+++.+ +++|+++.+.|++++..
T Consensus 64 ~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 64 SGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 36789999999999999999999 99999999999998864
No 5
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=33.15 E-value=2.2e+02 Score=24.01 Aligned_cols=26 Identities=8% Similarity=-0.074 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCcc
Q 025732 145 VLYSAVIGTGFRVGLCTWCLSRTGPL 170 (249)
Q Consensus 145 llylgv~~t~la~~l~~~al~~~g~~ 170 (249)
+...|+......-..+....+..++.
T Consensus 353 ~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (451)
T 1pw4_A 353 MIVIGFLIYGPVMLIGLHALELAPKK 378 (451)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHhchHHHHHHHHHHHhchh
Confidence 33344333333333455666666665
No 6
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=32.45 E-value=2.7e+02 Score=24.77 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------hccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHH
Q 025732 142 LVAVLYSAVIGTGFRVGLCTWC-------LSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMII 206 (249)
Q Consensus 142 ~~~llylgv~~t~la~~l~~~a-------l~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LI 206 (249)
|.++ .+|+++..+++..+.+. ++.=+|..+-..=-+--+++.+..-++-. .-+..|++|.+.+
T Consensus 260 ~~A~-iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glfa~-~~~~~Ql~g~~~~ 329 (407)
T 3b9w_A 260 VGAF-VIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHGLPGLLGGFSAILIVP-GIAVAQLTGIGIT 329 (407)
T ss_dssp HHHH-HHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTTHHHHHHHHHHHHHST-TCHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecchHHHHHHHHHHHHHcc-CCcHHHHHHHHHH
Confidence 4444 56777777777665422 23334555555555666777777665543 3355799987775
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=30.40 E-value=1.8e+02 Score=25.07 Aligned_cols=41 Identities=2% Similarity=-0.176 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHHhhhhcc
Q 025732 175 FKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMW 215 (249)
Q Consensus 175 ~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~gv~l~~~ 215 (249)
.....|+++.+...+.+-..-......|.++++.|+.+...
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~ 426 (445)
T 3l1l_A 386 AYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYAL 426 (445)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666554443222223455577777777655543
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=24.35 E-value=24 Score=21.23 Aligned_cols=14 Identities=21% Similarity=0.230 Sum_probs=5.3
Q ss_pred Hhhhhccccccccc
Q 025732 209 GFYAVMWGKSKEEK 222 (249)
Q Consensus 209 gv~l~~~~~~~~~~ 222 (249)
++.+..+-++|+.+
T Consensus 28 ~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 28 GVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHCSC
T ss_pred HHHHHhheehhhhh
Confidence 33333343433333
No 9
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=17.81 E-value=84 Score=19.68 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhhhccc----cccccccccc
Q 025732 199 SLIGAMIIVAGFYAVMWG----KSKEEKTTED 226 (249)
Q Consensus 199 ~~iG~~LIi~gv~l~~~~----~~~~~~~~~~ 226 (249)
.++|+.++++-+....|+ ||+.+.+.++
T Consensus 15 svl~GLLLL~Lii~~LwK~GFFKR~~~~~~~~ 46 (54)
T 2l8s_A 15 SAFAGLLLLMLLILALWKIGFFKRPLKKKMEK 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCcccCCCcchhhH
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=16.84 E-value=4.6e+02 Score=21.85 Aligned_cols=160 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhHHHHHHHHHHHHHHHHHH
Q 025732 79 FFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVG 158 (249)
Q Consensus 79 ~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~al~~~~~~~~~~~~~~~~~~~llylgv~~t~la~~ 158 (249)
++.....+.+.+......++.++++....+..-..+.+...++.......++...+ ...-+..|+..+...-.
T Consensus 65 ~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~l~G~~~~~~~~~ 137 (438)
T 3o7q_A 65 LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLF-------LVGLFIIAAGLGCLETA 137 (438)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHH-------HHHHHHHHhhHHHhhhh
Q ss_pred HHHHHhccCCccchhh-------hhhHHHHHHHHHHHHHh-CCc--------------------------cchhhHHHHH
Q 025732 159 LCTWCLSRTGPLYVSM-------FKPLAIVFSIVMDVVIV-GDA--------------------------FCLGSLIGAM 204 (249)
Q Consensus 159 l~~~al~~~g~~~~s~-------~~~l~Pi~a~l~~~l~l-gE~--------------------------~~~~~~iG~~ 204 (249)
...+..+..++.+-+. ...+-.+++..++..+. +.. ..+..++-++
T Consensus 138 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 217 (438)
T 3o7q_A 138 ANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVA 217 (438)
T ss_dssp HHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHH
Q ss_pred HHHHHhhhhccccccccccccccCCCCCCCccccccccccc
Q 025732 205 IIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPLLQNR 245 (249)
Q Consensus 205 LIi~gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (249)
+.+....+....+.++.+++++-.-...+..+..-..++||
T Consensus 218 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (438)
T 3o7q_A 218 IVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIR 258 (438)
T ss_dssp HHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHcCCcccccccccccccchhhhHHHHHhCh
Done!