Query 025732
Match_columns 249
No_of_seqs 147 out of 1251
Neff 7.9
Searched_HMMs 13730
Date Mon Mar 25 16:24:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025732.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025732hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iwga8 f.35.1.1 (A:513-566,A: 57.0 35 0.0025 25.5 11.2 28 181-208 95-122 (222)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 51.7 51 0.0037 25.8 14.6 28 144-171 349-376 (447)
3 d1iwga7 f.35.1.1 (A:7-37,A:331 31.9 74 0.0054 23.1 7.3 55 155-209 51-105 (199)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 20.0 50 0.0037 15.9 2.8 18 75-92 2-19 (27)
5 d2axte1 f.23.38.1 (E:3-84) Cyt 13.2 53 0.0039 20.5 2.1 45 195-247 25-69 (82)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 11.0 3.1E+02 0.023 20.6 16.2 46 76-123 61-106 (447)
7 d2nr5a1 a.25.6.1 (A:1-64) Hypo 6.6 27 0.002 20.1 -1.2 25 224-248 26-52 (64)
8 d2iuba2 f.17.3.1 (A:286-349) M 5.4 2E+02 0.015 16.4 2.5 10 198-207 43-52 (64)
9 d1ppjg_ f.23.13.1 (G:) Ubiquin 5.3 2.4E+02 0.018 17.1 2.9 23 143-166 43-65 (75)
10 d1pv7a_ f.38.1.2 (A:) Lactose 4.9 5.6E+02 0.041 18.3 13.4 24 147-170 321-344 (417)
No 1
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=57.00 E-value=35 Score=25.52 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhCCccchhhHHHHHHHHH
Q 025732 181 VFSIVMDVVIVGDAFCLGSLIGAMIIVA 208 (249)
Q Consensus 181 i~a~l~~~l~lgE~~~~~~~iG~~LIi~ 208 (249)
+.+.+.+..+.+.+++....+|.++.++
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhh
Confidence 5566777888999999999888887554
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=51.73 E-value=51 Score=25.80 Aligned_cols=28 Identities=7% Similarity=-0.089 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccc
Q 025732 144 AVLYSAVIGTGFRVGLCTWCLSRTGPLY 171 (249)
Q Consensus 144 ~llylgv~~t~la~~l~~~al~~~g~~~ 171 (249)
.....|..........+....+..++..
T Consensus 349 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~ 376 (447)
T d1pw4a_ 349 CMIVIGFLIYGPVMLIGLHALELAPKKA 376 (447)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTSCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 3334444434444455566666666544
No 3
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=31.93 E-value=74 Score=23.06 Aligned_cols=55 Identities=5% Similarity=0.051 Sum_probs=34.2
Q ss_pred HHHHHHHHHhccCCccchhhhhhHHHHHHHHHHHHHhCCccchhhHHHHHHHHHH
Q 025732 155 FRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAG 209 (249)
Q Consensus 155 la~~l~~~al~~~g~~~~s~~~~l~Pi~a~l~~~l~lgE~~~~~~~iG~~LIi~g 209 (249)
+.+.......+..-+...........+...+....++|.+++.....+..++++.
T Consensus 51 lv~~vl~l~~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi 105 (199)
T d1iwga7 51 LVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGL 105 (199)
T ss_dssp HHHHHHHTTCCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 3333333334545555555555555566666667788999998888887766553
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=19.95 E-value=50 Score=15.88 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 025732 75 ILGGFFLAAEAFMNSAWF 92 (249)
Q Consensus 75 ~~G~~l~l~aa~~~a~y~ 92 (249)
.+|.+..-++.++|+.|.
T Consensus 2 vlgli~~tl~glf~aayq 19 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 367788888888888874
No 5
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=13.16 E-value=53 Score=20.55 Aligned_cols=45 Identities=16% Similarity=0.347 Sum_probs=27.5
Q ss_pred cchhhHHHHHHHHHHhhhhccccccccccccccCCCCCCCccccccccccccc
Q 025732 195 FCLGSLIGAMIIVAGFYAVMWGKSKEEKTTEDCGLGSVNSSREKVPLLQNRIE 247 (249)
Q Consensus 195 ~~~~~~iG~~LIi~gv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (249)
+....+.|-+.+-.|+.-=..+..|..+= -+.+|.++|+..+|.+
T Consensus 25 IPslFiaGwlFVstGLAYdvFGtPrPneY--------ft~~rq~~pli~~Rf~ 69 (82)
T d2axte1 25 IPALFIAGWLFVSTGLAYDVFGTPRPDSY--------YAQEQRSIPLVTDRFE 69 (82)
T ss_dssp HHHHHHHHHHHHHTTHHHHHTTCCCTTCS--------SCSSCCSCCCCCCSSS
T ss_pred ccHHHHhhhhheecccchhhcCCCCcccc--------cccccccCcccccccC
Confidence 34445666666777766544443333222 4566888999988865
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=10.97 E-value=3.1e+02 Score=20.62 Aligned_cols=46 Identities=4% Similarity=-0.060 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Q 025732 76 LGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAF 123 (249)
Q Consensus 76 ~G~~l~l~aa~~~a~y~v~~k~~~~~~~~~~~~~~~~~l~g~i~l~~~ 123 (249)
.|.+.. ...+.+++......++.+++++ -.......+..++..+..
T Consensus 61 ~g~~~s-~~~~~~~~~~~~~G~l~Dr~g~-r~~~~~~~~~~~~~~~~~ 106 (447)
T d1pw4a_ 61 LGFALS-GISIAYGFSKFIMGSVSDRSNP-RVFLPAGLILAAAVMLFM 106 (447)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHHHhhc
Confidence 454333 3344555666666777777764 333334444444443333
No 7
>d2nr5a1 a.25.6.1 (A:1-64) Hypothetical protein SO2669 {Shewanella oneidensis [TaxId: 70863]}
Probab=6.59 E-value=27 Score=20.13 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=15.8
Q ss_pred ccccCCCCCC-Cc-ccccccccccccc
Q 025732 224 TEDCGLGSVN-SS-REKVPLLQNRIEE 248 (249)
Q Consensus 224 ~~~~~~~~~~-~~-~~~~~~~~~~~~~ 248 (249)
++-||-..++ |+ -..|-.-.|||.|
T Consensus 26 rqlcgaedssdssdmqeveiwtnrike 52 (64)
T d2nr5a1 26 RQLCGAEDSSDSSDMQEVEIWTNRIKE 52 (64)
T ss_dssp HHTTTTTCC----HHHHHHHHHHHHHH
T ss_pred HHHhCCccCCcchhhHHHHHHHHHHHH
Confidence 4578875444 33 5678888899876
No 8
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=5.40 E-value=2e+02 Score=16.41 Aligned_cols=10 Identities=10% Similarity=0.288 Sum_probs=3.9
Q ss_pred hhHHHHHHHH
Q 025732 198 GSLIGAMIIV 207 (249)
Q Consensus 198 ~~~iG~~LIi 207 (249)
...++..+++
T Consensus 43 ~~~~~~~~~~ 52 (64)
T d2iuba2 43 PVVLAVMGVI 52 (64)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334443333
No 9
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.26 E-value=2.4e+02 Score=17.09 Aligned_cols=23 Identities=17% Similarity=0.030 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 025732 143 VAVLYSAVIGTGFRVGLCTWCLSR 166 (249)
Q Consensus 143 ~~llylgv~~t~la~~l~~~al~~ 166 (249)
-.++|.+ ...+++|.+|.|+.++
T Consensus 43 ~~~l~v~-PPfi~~Y~iy~W~~~~ 65 (75)
T d1ppjg_ 43 ACILRVA-PPFVAFYLVYTWGTQE 65 (75)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HhceEEc-CHHHHHHHHHHHHHHH
Confidence 3556664 5788889999998764
No 10
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=4.86 E-value=5.6e+02 Score=18.25 Aligned_cols=24 Identities=13% Similarity=-0.079 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCCcc
Q 025732 147 YSAVIGTGFRVGLCTWCLSRTGPL 170 (249)
Q Consensus 147 ylgv~~t~la~~l~~~al~~~g~~ 170 (249)
..|+......-..+....+..++.
T Consensus 321 l~g~~~~~~~~~~~~~~~~~~~~~ 344 (417)
T d1pv7a_ 321 LHMFEVPFLLVGCFKYITSQFEVR 344 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHh
Confidence 334333333334444555555543
Done!