Query 025733
Match_columns 249
No_of_seqs 187 out of 1469
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 16:25:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025733.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025733hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.5 8E-14 2.7E-18 130.0 9.5 114 1-121 212-344 (367)
2 4err_A Autotransporter adhesin 29.3 63 0.0022 24.1 4.1 21 116-136 49-69 (90)
3 1y0n_A Hypothetical UPF0270 pr 14.7 1E+02 0.0034 22.3 2.4 22 2-23 41-62 (78)
4 1uf5_A N-carbamyl-D-amino acid 14.7 1.9E+02 0.0065 24.4 4.8 48 6-54 33-96 (303)
5 3g2b_A Coenzyme PQQ synthesis 12.9 78 0.0027 23.2 1.5 16 10-25 27-42 (95)
6 1use_A VAsp, vasodilator-stimu 11.2 3.5E+02 0.012 17.5 4.1 20 101-120 11-30 (45)
7 2w1v_A Nitrilase-2, nitrilase 10.4 2E+02 0.0067 24.1 3.4 42 6-48 30-79 (276)
8 1pzq_A Erythronolide synthase; 10.2 3.4E+02 0.012 17.9 3.8 38 111-150 11-51 (60)
9 2xw6_A MGS, methylglyoxal synt 10.1 5.6E+02 0.019 19.8 5.8 39 3-48 65-107 (134)
10 1hru_A YRDC gene product; prot 9.5 1.5E+02 0.0051 24.1 2.2 21 2-23 11-31 (188)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.48 E-value=8e-14 Score=130.00 Aligned_cols=114 Identities=18% Similarity=0.263 Sum_probs=82.7
Q ss_pred CHHHHHHHHC-CCeEEEEeCCcccCC----CCcccCCcChHHH----HHHHhcCCCC-eEEEEEEecCCccCcCC-----
Q 025733 1 MDMAIAKLNS-GGWVHIFPEGGRSRD----GGKTVGSPKRGVG----RLILDADNVP-MVVPFVHTGMQEVMPIG----- 65 (249)
Q Consensus 1 m~~a~~~Lk~-G~~V~IFPEGTrs~~----g~~~l~~fk~G~a----~LA~~a~~vP-~IVPV~I~G~~~~~p~g----- 65 (249)
|+++++.|++ |.+|+|||||||+++ |++...+|+.|.+ +||.+++ +| -||||+|.+ .+++|..
T Consensus 212 l~~~~~~Lk~GG~sI~IFPEGTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~ksg-~P~hIvPvaI~t-~~imppp~~ve~ 289 (367)
T 1iuq_A 212 LKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSD-VPGHLFPLALLC-HDIMPPPSQVEI 289 (367)
T ss_dssp HHHHHHHHHHCCCEEEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTSS-SCEEEEEEEEEC-GGGSCCC-----
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCCCCCCCCCccccccccchhhhHHHHHHHHcC-CCceEEEEEEEe-ccccCCcccccc
Confidence 4678899999 559999999999995 5444677999999 9999999 55 389999995 5777653
Q ss_pred ----CCCCCCCCeEEEEECCcccCCCCcchHHhhhhchHHHHHHHHHHHHHHHHHHHHHH
Q 025733 66 ----ATFPRIGKTVTVLIGDPIEFDDLVDEEQTKYLSRGKLYDAVASRIGHRLKKLKLQV 121 (249)
Q Consensus 66 ----~~lpr~g~~V~V~~GePI~~~~l~~~~~~~~~~~re~~~~vt~~I~~~L~~L~~~~ 121 (249)
..+.++ .+|.|.||+||+++++..... +.++..+++++.+++.|.+...++
T Consensus 290 ~~g~~r~i~~-~~V~v~ig~pI~~~~l~~~~e----~~~e~~~~l~e~v~~~I~~~y~~l 344 (367)
T 1iuq_A 290 EIGEKRVIAF-NGAGLSVAPEISFEEIAATHK----NPEEVREAYSKALFDSVAMQYNVL 344 (367)
T ss_dssp -----CCCCC-BCCEEEECCCCCHHHHHHTSS----SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccceeec-ccEEEEECCccchhhcccccc----chHHHHHHHHHHHHHHHHHHHHHH
Confidence 112333 489999999999987642211 124445567777777776655444
No 2
>4err_A Autotransporter adhesin; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.55A {Vibrio vulnificus}
Probab=29.30 E-value=63 Score=24.06 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=10.2
Q ss_pred HHHHHHHHHhccCCChhhHHH
Q 025733 116 KLKLQVDRLALEQPSAECVAD 136 (249)
Q Consensus 116 ~L~~~~e~~~~e~~~~~~~~~ 136 (249)
+|..+++.+-...|.+.++..
T Consensus 49 ~L~~kie~Yl~~hPdS~Rv~a 69 (90)
T 4err_A 49 ELNKKINDYIAEHPTSGRNQA 69 (90)
T ss_dssp HHHHHHHHHHHHCCSCHHHHH
T ss_pred HHHHHHHHHHhcCCchhhHHH
Confidence 344445555555554444443
No 3
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=14.69 E-value=1e+02 Score=22.32 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=18.1
Q ss_pred HHHHHHHHCCCeEEEEeCCccc
Q 025733 2 DMAIAKLNSGGWVHIFPEGGRS 23 (249)
Q Consensus 2 ~~a~~~Lk~G~~V~IFPEGTrs 23 (249)
+.+.+.|++|+.+++|=|=+-+
T Consensus 41 ~qv~~qL~~GeavIvfse~~Es 62 (78)
T 1y0n_A 41 ERARHALRRGEAVILFDPESQQ 62 (78)
T ss_dssp HHHHHHHHTTSEEEEECTTTCC
T ss_pred HHHHHHHHcCCEEEEECCCCCe
Confidence 5678899999999999876544
No 4
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=14.68 E-value=1.9e+02 Score=24.36 Aligned_cols=48 Identities=13% Similarity=0.072 Sum_probs=29.0
Q ss_pred HHHHCCCeEEEEeCCcccCCCCcc----------------cCCcChHHHHHHHhcCCCCeEEEEE
Q 025733 6 AKLNSGGWVHIFPEGGRSRDGGKT----------------VGSPKRGVGRLILDADNVPMVVPFV 54 (249)
Q Consensus 6 ~~Lk~G~~V~IFPEGTrs~~g~~~----------------l~~fk~G~a~LA~~a~~vP~IVPV~ 54 (249)
++.++|--|+||||-..+-..... ..++..-+..+|++.+ +.+|+.+.
T Consensus 33 ~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~-~~iv~G~~ 96 (303)
T 1uf5_A 33 KAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVVRPLFEKAAELG-IGFNLGYA 96 (303)
T ss_dssp HHHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTTTHHHHHHHHHHT-CEEEEEEE
T ss_pred HHHhcCCCEEEeccccccCCCccccccchhhhHHHHhhcCCCHHHHHHHHHHHHhC-eEEEEeee
Confidence 344568789999997765221000 1234456788888888 66445543
No 5
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=12.91 E-value=78 Score=23.23 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=13.5
Q ss_pred CCCeEEEEeCCcccCC
Q 025733 10 SGGWVHIFPEGGRSRD 25 (249)
Q Consensus 10 ~G~~V~IFPEGTrs~~ 25 (249)
+|.+|+++|||...-+
T Consensus 27 ~~~~VlL~peg~i~Ln 42 (95)
T 3g2b_A 27 RDQWVLLAPERVVELD 42 (95)
T ss_dssp GTEEEEECCCCCCCCC
T ss_pred CCcEEEECCCceeecC
Confidence 6889999999988765
No 6
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=11.17 E-value=3.5e+02 Score=17.49 Aligned_cols=20 Identities=15% Similarity=0.336 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025733 101 KLYDAVASRIGHRLKKLKLQ 120 (249)
Q Consensus 101 e~~~~vt~~I~~~L~~L~~~ 120 (249)
...+++.+.+..+|+.++.+
T Consensus 11 ~~KqEIL~E~RkElqK~K~E 30 (45)
T 1use_A 11 RVKQELLEEVKKELQKVKEE 30 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666777777665
No 7
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=10.39 E-value=2e+02 Score=24.06 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=25.1
Q ss_pred HHHHCCCeEEEEeCCcccCCCCccc--------CCcChHHHHHHHhcCCCC
Q 025733 6 AKLNSGGWVHIFPEGGRSRDGGKTV--------GSPKRGVGRLILDADNVP 48 (249)
Q Consensus 6 ~~Lk~G~~V~IFPEGTrs~~g~~~l--------~~fk~G~a~LA~~a~~vP 48 (249)
++.++|--|+||||...+......+ .++..-+..+|.+.+ +.
T Consensus 30 ~a~~~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~l~~~a~~~~-~~ 79 (276)
T 2w1v_A 30 EAAKQGANIVSLPECFNSPYGTTYFPDYAEKIPGESTQKLSEVAKESS-IY 79 (276)
T ss_dssp HHHHTTCSEEECCTTTTSCCSTTTHHHHCBCSSSHHHHHHHHHHHHHT-SE
T ss_pred HHHHCCCCEEEcCCCcccCCCHHHHHHHhccCCCHHHHHHHHHHHHcC-eE
Confidence 3445677899999987653211000 123344667888888 56
No 8
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=10.18 E-value=3.4e+02 Score=17.91 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhccCCCh---hhHHHhhhhhchhhhcccc
Q 025733 111 GHRLKKLKLQVDRLALEQPSA---ECVADILHMVDQESLGLQN 150 (249)
Q Consensus 111 ~~~L~~L~~~~e~~~~e~~~~---~~~~~~~~~~~~~~~~~~~ 150 (249)
.+++.+|...++++..++-.. .+...++ .+|++.-..+
T Consensus 11 gdrldelekalealsaedghddvgqrlesll--rrwnsrrada 51 (60)
T 1pzq_A 11 GDRLDELEKALEALSAEDGHDDVGQRLESLL--RRWNSRRADA 51 (60)
T ss_dssp HHHHHHHHHHHHHHTTSSCCHHHHHHHHHHH--HHHHHHHHCS
T ss_pred hhHHHHHHHHHHHhcccccccHHHHHHHHHH--HHHhhcccCC
Confidence 445556666666666555543 3444555 6677665433
No 9
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=10.11 E-value=5.6e+02 Score=19.85 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=26.5
Q ss_pred HHHHHHHCCCe--EEEEeC--CcccCCCCcccCCcChHHHHHHHhcCCCC
Q 025733 3 MAIAKLNSGGW--VHIFPE--GGRSRDGGKTVGSPKRGVGRLILDADNVP 48 (249)
Q Consensus 3 ~a~~~Lk~G~~--V~IFPE--GTrs~~g~~~l~~fk~G~a~LA~~a~~vP 48 (249)
.+...+++|+. |+.||+ |..... +=-.-+-++|...+ +|
T Consensus 65 ~I~d~I~~geIdlVInt~~pl~~~~h~------~D~~~IrR~A~~~~-IP 107 (134)
T 2xw6_A 65 QMGARVAEGRILAVIFFRDPLTAQPHE------PDVQALLRVCDVHG-VP 107 (134)
T ss_dssp HHHHHHHTTCEEEEEEECCTTTCCTTS------CCSHHHHHHHHHHT-CC
T ss_pred hHHHHHHCCCccEEEEccCcccCCCcc------chHHHHHHHHHHcC-CC
Confidence 46788999975 777787 733311 11356788899998 78
No 10
>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Escherichia coli} SCOP: d.115.1.1
Probab=9.45 E-value=1.5e+02 Score=24.05 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=16.7
Q ss_pred HHHHHHHHCCCeEEEEeCCccc
Q 025733 2 DMAIAKLNSGGWVHIFPEGGRS 23 (249)
Q Consensus 2 ~~a~~~Lk~G~~V~IFPEGTrs 23 (249)
+.+++.|++|+.|+ ||--|.-
T Consensus 11 ~~a~~~L~~G~iva-~ptdt~y 31 (188)
T 1hru_A 11 AAAIDVLNEERVIA-YPTEAVF 31 (188)
T ss_dssp HHHHHHHHTTCCEE-EECSSSE
T ss_pred HHHHHHHHCCCEEE-EeCCCEe
Confidence 57889999998876 9976654
Done!