RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 025733
(249 letters)
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 88.9 bits (221), Expect = 7e-22
Identities = 36/94 (38%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 1 MDMAIAKLNSGGWVHIFPEGGRSRDGGKTVGSPKRGVGRLILDADNVPMVVPFVHTGMQE 60
+ AI L G V IFPEG RSRDG + K G RL +A VP +VP +G
Sbjct: 87 LREAIEALKEGESVVIFPEGTRSRDG--ELLPFKSGAFRLAKEA-GVP-IVPVAISGTWG 142
Query: 61 VMPIGATFPRIGKTVTVLIGDPIEFDDLVDEEQT 94
+P G VTV IG+PI + L E+
Sbjct: 143 SLPKGK-KLPRPGRVTVRIGEPIPPEGLELAEED 175
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 53.5 bits (129), Expect = 2e-09
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 1 MDMAIAKLNSGGWVHIFPEGGRSRDGGKTVGSPKRGVGRLILDADNVPMVVPFVHTGM 58
+ A+ L G W+ IFPEG RSR G + K+G RL L+A +VP G
Sbjct: 65 LREAVELLKEGEWLLIFPEGTRSRPG--KLLPFKKGAARLALEAG--VPIVPVAIRGT 118
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 55.7 bits (134), Expect = 3e-09
Identities = 35/89 (39%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 4 AIAKLNSGG-WVHIFPEGGRSRDGGKTVGSPKRGVGRLILDADNVPMVVPFVHTGMQEVM 62
A+A+L +GG + IFPEG RSR G + + KRG RL L+A VP +VP G +E+
Sbjct: 130 AVARLKAGGRSLVIFPEGTRSRGGEE-LLPFKRGAARLALEA-GVP-IVPVAIVGAEELF 186
Query: 63 PIGATFPRIGKTVTVLIGDPIEFDDLVDE 91
P V V IG PI+ L +
Sbjct: 187 PSLKKGK-----VKVRIGPPIDISALPEP 210
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 49.6 bits (119), Expect = 7e-08
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 1 MDMAIAKLNSGGWVHIFPEGGRSRDGGKTVGSPKRGVGRLILDADNVPMVVPFVHT 56
++ + L G V IFPEG RSR G + K+G RL +A VP +VP +
Sbjct: 80 LEYLVELLREGELVLIFPEGTRSRGGE--LLPFKKGAFRLAREAG-VP-IVPVAIS 131
>gnl|CDD|153254 cd07992, LPLAT_AAK14816-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
AAK14816-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
glycerol-3-phosphate acyltransferases such as the
Plasmodium falciparum locus AAK14816 putative
acyltransferase, and similar proteins.
Length = 203
Score = 41.1 bits (97), Expect = 2e-04
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 8 LNSGGWVHIFPEGGRSRDGGKTVGSPKRGVGRLILDA-DNVPMVVPFVHTGMQEVMPIGA 66
L +GG + IFPEGG S D + K G R+ L+A + V V G+
Sbjct: 107 LKAGGAIGIFPEGG-SHD-RPRLLPLKAGAARMALEALEAGQKDVKIVPVGLNYEDK--- 161
Query: 67 TFPRIGKTVTVLIGDPIEFDDLVDEE 92
R V V G PI + E
Sbjct: 162 --SRFRSRVLVEFGKPISVSAFEEAE 185
>gnl|CDD|215488 PLN02901, PLN02901, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 214
Score = 40.5 bits (95), Expect = 3e-04
Identities = 29/80 (36%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 8 LNSGGWVHIFPEGGRSRDGGKTVGSPKRGVGRLILDADNVPMVVPFVHTGMQEVMPIGAT 67
L G V FPEG RS+DG + + K+G + VP VVP G ++MP G
Sbjct: 119 LKKGASVFFFPEGTRSKDG--KLAAFKKGAFSVAAKT-GVP-VVPITLVGTGKIMPNGKE 174
Query: 68 FPRIGKTVTVLIGDPIEFDD 87
+V V+I PIE D
Sbjct: 175 GILNPGSVKVVIHPPIEGSD 194
>gnl|CDD|153248 cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ACT14924. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Pectobacterium carotovorum subsp. carotovorum PC1 locus
ACT14924 putative acyltransferase, and similar proteins.
Length = 210
Score = 36.8 bits (86), Expect = 0.005
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 21/118 (17%)
Query: 1 MDMAIAKLNSGGWVHIFPEGG---RSRDGGKTVGSP-KRGVGRLILD--ADNVPMVVP-- 52
+ A+ L +GG + IFP G S G+ P V RL A VP+
Sbjct: 88 LREALRHLKNGGALIIFPAGRVSTASPPFGRVSDRPWNPFVARLARKAKAPVVPVYFSGR 147
Query: 53 ----F-----VHTGMQEVMPIGATFPRIGKTVTVLIGDPIEFDDLV----DEEQTKYL 97
F +H ++ ++ + GKT+ + +G PI ++L EE +L
Sbjct: 148 NSRLFYLAGLIHPTLRTLLLPRELLNKRGKTIRIRVGRPIPPEELARFEDAEELADFL 205
>gnl|CDD|153255 cd07993, LPLAT_DHAPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: acyltransferases of de novo and remodeling
pathways of glycerophospholipid biosynthesis which
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
subgroup are such LPLATs as dihydroxyacetone phosphate
acyltransferase (DHAPAT, also known as 1
glycerol-3-phosphate O-acyltransferase 1) and similar
proteins.
Length = 205
Score = 32.9 bits (76), Expect = 0.083
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 12/58 (20%)
Query: 16 IFPEGGRSRDGGKTVGSPKRGVGRLILDADNVPMVVPFVHTGMQEVM--PIGATFPRI 71
F EG RSR GK + PK G+ ++++A ++ + +V+ P+ ++ R+
Sbjct: 106 FFIEGTRSRT-GKLL-PPKLGLLSVVVEA--------YLKGSVPDVLIVPVSISYDRV 153
>gnl|CDD|222426 pfam13870, DUF4201, Domain of unknown function (DUF4201). This is
a family of coiled-coil proteins from eukaryotes. The
function is not known.
Length = 177
Score = 32.9 bits (76), Expect = 0.084
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 112 HRLKKLKLQVDRLALEQPSAECVADILHMVDQESLGLQNHLLNE 155
H L K++ ++++ E + + LH++D E L ++N LNE
Sbjct: 20 HTLAKIQEKLEQK-------EELGEGLHLIDFEQLQIENQALNE 56
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 33.0 bits (76), Expect = 0.17
Identities = 37/150 (24%), Positives = 54/150 (36%), Gaps = 33/150 (22%)
Query: 4 AIAK-LNSGGWVHIFPEGGRSRDGGKTVGSPKRGVGRLILDADNVPMVVPF--------- 53
I K L+ G V IFPEG +R+G + KRG ++ D VP ++PF
Sbjct: 503 FIRKALDDGEVVCIFPEGAITRNG--QLNEFKRGFELIVKGTD-VP-IIPFYIRGLWGSI 558
Query: 54 ---VHTGMQEVMPIGATFPRIGKTVTVLIGDPIEFDDLVDEEQTKYLSRGKLY----DAV 106
P +P VTV G P+ T + + ++ D+
Sbjct: 559 FSRASGKFLWRWPTRIPYP-----VTVAFGKPM------PAHSTAHEVKQAVFELSFDSW 607
Query: 107 ASRIGHRLKKLKLQVDRLALEQPSAECVAD 136
SR + +D A S VAD
Sbjct: 608 KSRKEALPPLAEAWIDT-AKRNWSRLAVAD 636
>gnl|CDD|216426 pfam01307, Plant_vir_prot, Plant viral movement protein. This
family includes several known plant viral movement
proteins from a number of different ssRNA plant virus
families including potexviruses, hordeiviruses and
carlaviruses.
Length = 98
Score = 30.6 bits (70), Expect = 0.23
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 10 SGGWVHIFPEGGRSRDGGKTV--GSPKRG 36
G +H P GG RDG K + SP +
Sbjct: 35 VGDNIHSLPHGGSYRDGTKRINYNSPNKL 63
>gnl|CDD|224118 COG1197, Mfd, Transcription-repair coupling factor (superfamily II
helicase) [DNA replication, recombination, and repair /
Transcription].
Length = 1139
Score = 31.1 bits (71), Expect = 0.58
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 26/71 (36%)
Query: 78 LIGDPIEFDDL----VDEEQTKYLSRGKLYDAVASRIG----HRLKKLKLQVDRLALEQP 129
L+ ++F DL +DEEQ R G +LK+L+ VD L L
Sbjct: 707 LLSKDVKFKDLGLLIIDEEQ---------------RFGVKHKEKLKELRANVDVLTL--- 748
Query: 130 SAECVADILHM 140
SA + L+M
Sbjct: 749 SATPIPRTLNM 759
>gnl|CDD|132744 cd06946, NR_LBD_ERR, The ligand binding domain of estrogen
receptor-related nuclear receptors. The ligand binding
domain of estrogen receptor-related receptors (ERRs):
The family of estrogen receptor-related receptors
(ERRs), a subfamily of nuclear receptors, is closely
related to the estrogen receptor (ER) family, but it
lacks the ability to bind estrogen. ERRs can interfere
with the classic ER-mediated estrogen signaling pathway,
positively or negatively. ERRs share target genes,
co-regulators and promoters with the estrogen receptor
(ER) family. There are three subtypes of ERRs: alpha,
beta and gamma. ERRs bind at least two types of DNA
sequence, the estrogen response element and another
site, originally characterized as SF-1 (steroidogenic
factor 1) response element. Like other members of the
nuclear receptor (NR) superfamily of ligand-activated
transcription factors, ERR has a central well conserved
DNA binding domain (DBD), a variable N-terminal domain,
a flexible hinge and a C-terminal ligand binding domain
(LBD).
Length = 221
Score = 30.0 bits (68), Expect = 0.80
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 86 DDLVDEEQTKYLSRGKLYDAVASRIGHRLKKLKLQVDRLALEQPSAECVADILHMVDQES 145
D ++DEE + +LY A ++ RL++L+L+ + L + A +D +H+ D E+
Sbjct: 93 DFILDEELAREAGLLELYSACL-QLVRRLQRLRLEKEEYVLLKALALANSDSVHIEDVEA 151
Query: 146 L-GLQNHLLN 154
+ L++ LL
Sbjct: 152 VRQLRDALLE 161
>gnl|CDD|182930 PRK11054, helD, DNA helicase IV; Provisional.
Length = 684
Score = 29.9 bits (68), Expect = 1.3
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 14/90 (15%)
Query: 91 EEQTKYLSRGKLYDAVASRIGHRLKKLKLQVDRLALEQPSAECVADILHMVDQESLGLQN 150
+Q K+L+R ++ + +I L L L V+RL E L +
Sbjct: 114 TQQDKWLTRSQV-SGLQQQIRQALSALPLPVERLEAFDNCREAWRKCLAWLQDGEAARLQ 172
Query: 151 HLLNEDYSLAQEALVQSKLDITPTQERSFF 180
H N+ + + + FF
Sbjct: 173 H--NQAW-----------TEAMLEEYADFF 189
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 28.9 bits (65), Expect = 1.8
Identities = 28/100 (28%), Positives = 35/100 (35%), Gaps = 16/100 (16%)
Query: 4 AIAKL-NSGGWVHIFPEGGRSRDGGKTVGSPKRGVGRLIL--DADNVPMVVPFVHTGMQE 60
L G V IFPEG R+R K K GV L VP V + E
Sbjct: 93 VARLLSKPGSVVWIFPEGTRTR-RDKRPLQFKPGVAHLAEKAGVPIVP-VALRYTFELFE 150
Query: 61 VMPIGATFPRIGKTVTVLIGDPIEF-DDLVDEEQTKYLSR 99
P + V IG PI + + + EE L+
Sbjct: 151 QFP----------EIFVRIGPPIPYAETALGEELAAELAN 180
>gnl|CDD|128866 smart00603, LCCL, LCCL domain.
Length = 85
Score = 27.7 bits (62), Expect = 1.8
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 9 NSGGWVHIFPEGGRS 23
NSGG V + GGR
Sbjct: 58 NSGGAVDVVRVGGRE 72
>gnl|CDD|219347 pfam07247, AATase, Alcohol acetyltransferase. This family
contains a number of alcohol acetyltransferase
(EC:2.3.1.84) enzymes approximately 500 residues long
found in both bacteria and metazoa. These catalyze the
esterification of isoamyl alcohol by acetyl coenzyme A.
Length = 479
Score = 29.3 bits (66), Expect = 1.8
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 58 MQEVMPIGA---TFPRIGKTVTVLIGDPIEFDDLVDEEQ 93
+ P G V+I + I+ DD+V EQ
Sbjct: 51 ATNIYYTSDEYYNAPFNGHDFIVVILETIKLDDVVKNEQ 89
>gnl|CDD|233032 TIGR00580, mfd, transcription-repair coupling factor (mfd). All
proteins in this family for which functions are known
are DNA-dependent ATPases that function in the process
of transcription-coupled DNA repair in which the repair
of the transcribed strand of actively transcribed genes
is repaired at a higher rate than the repair of
non-transcribed regions of the genome and than the
non-transcribed strand of the same gene. This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University). This family is
closely related to the RecG and UvrB families [DNA
metabolism, DNA replication, recombination, and repair].
Length = 926
Score = 27.7 bits (62), Expect = 6.3
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 26/71 (36%)
Query: 78 LIGDPIEFDDL----VDEEQTKYLSRGKLYDAVASRIG----HRLKKLKLQVDRLALEQP 129
L+ ++F DL +DEEQ R G +LK+L+ VD L L
Sbjct: 564 LLQKDVKFKDLGLLIIDEEQ---------------RFGVKQKEKLKELRTSVDVLTL--- 605
Query: 130 SAECVADILHM 140
SA + LHM
Sbjct: 606 SATPIPRTLHM 616
>gnl|CDD|224689 COG1775, HgdB, Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA
dehydratase subunit, BcrC/BadD/HgdB [Amino acid
transport and metabolism].
Length = 379
Score = 27.4 bits (61), Expect = 7.6
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 73 KTVTVLIGDPIEFDDLVDEEQTKYLSRGKLYDAVASRIGHRLKKLKLQVDRLALEQPSAE 132
+V + +F +L++E ++ KL DA+A +RL++ ++ +LA +PS
Sbjct: 136 PSVKYWHNELDKFKELLEELTGNEITEEKLRDAIA--RYNRLREALAKLYKLAKHKPSPL 193
Query: 133 CVADIL-HMVDQESLGLQNHLLNEDYSLAQE 162
+D M L ++ + E L +E
Sbjct: 194 SGSDAFNVMAFAVFLRDKDAFIEELEELIEE 224
>gnl|CDD|129621 TIGR00530, AGP_acyltrn, 1-acyl-sn-glycerol-3-phosphate
acyltransferases. This model describes the core
homologous region of a collection of related proteins,
several of which are known to act as
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC
2.3.1.51). Proteins scoring above the trusted cutoff are
likely to have the same general activity. However, there
is variation among characterized members as to whether
the acyl group can be donated by acyl carrier protein or
coenzyme A, and in the length and saturation of the
donated acyl group. 1-acyl-sn-glycerol-3-phosphate
acyltransferase is also called 1-AGP acyltransferase,
lysophosphatidic acid acyltransferase, and LPA
acyltransferase [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 130
Score = 26.5 bits (59), Expect = 8.7
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 4 AIAKLNSGGWVHIFPEGGRSRDGGKTVGSPKRG 36
AI L G + +FPEG RSR + K+G
Sbjct: 82 AIEVLKQGRSIGVFPEGTRSRGRD--ILPFKKG 112
>gnl|CDD|216094 pfam00747, Viral_DNA_bp, ssDNA binding protein. This protein is
found in herpesviruses and is needed for replication.
Length = 1111
Score = 27.3 bits (61), Expect = 9.8
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 39 RLILDADNVPMVVPFVHTGMQEVMPIGATFPRIGKTVTVLIGD 81
L LD D + V V G +E++ G P + + V IG
Sbjct: 138 ALGLDPDETLLHV-VVTEGFKELLYAGNLIPCVEEADKVQIGG 179
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.408
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,150,445
Number of extensions: 1285325
Number of successful extensions: 1015
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1009
Number of HSP's successfully gapped: 32
Length of query: 249
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 155
Effective length of database: 6,768,326
Effective search space: 1049090530
Effective search space used: 1049090530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)