RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 025733
         (249 letters)



>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
           {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
          Length = 367

 Score = 56.2 bits (135), Expect = 6e-10
 Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 16/134 (11%)

Query: 1   MDMAIAKLNSGG-WVHIFPEGGRSRDGGKTV-------GSPKRGVGRLILDADNVPM-VV 51
           +      L  G   + I P GGR R    T         +      R ++   +VP  + 
Sbjct: 212 LKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLF 271

Query: 52  PFVHTGMQEVMPIGATFPRIGK-------TVTVLIGDPIEFDDLVDEEQTKYLSRGKLYD 104
           P        + P       IG+          + +   I F+++    +     R     
Sbjct: 272 PLALLCHDIMPPPSQVEIEIGEKRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSK 331

Query: 105 AVASRIGHRLKKLK 118
           A+   +  +   LK
Sbjct: 332 ALFDSVAMQYNVLK 345


>d1ng7a_ a.178.1.1 (A:) Soluble domain of poliovirus core protein 3a
           {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
          Length = 60

 Score = 25.9 bits (57), Expect = 0.98
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 4/30 (13%)

Query: 115 KKLKLQVDRLALEQPSAECVADILHMVDQE 144
           K LK+ +       P  EC+ D+L  VD +
Sbjct: 7   KDLKIDIK----TSPPPECINDLLQAVDSQ 32


>d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 130

 Score = 27.1 bits (60), Expect = 1.00
 Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 12/51 (23%)

Query: 89  VDEEQTKYLSRGKLYDAVASRIGHRLKKLKLQVDRLAL--EQPSAECVADI 137
           V+++   Y          A  +G +++ L + VD + L  E   ++ + D+
Sbjct: 16  VNKQTKDY----------AESVGRKVRDLGMVVDLIFLNTEVSLSQALEDV 56


>d2aifa1 d.79.3.1 (A:16-130) Ribosomal protein L7ae {Cryptosporidium
           parvum [TaxId: 5807]}
          Length = 115

 Score = 26.0 bits (57), Expect = 2.5
 Identities = 5/48 (10%), Positives = 12/48 (25%)

Query: 49  MVVPFVHTGMQEVMPIGATFPRIGKTVTVLIGDPIEFDDLVDEEQTKY 96
              P+V    +  +       R      +   D       + E + + 
Sbjct: 66  KNTPYVFVRSKVALGRACGVSRPVIAAAITSKDGSSLSSQITELKDQI 113


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.138    0.408 

Gapped
Lambda     K      H
   0.267   0.0615    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 932,058
Number of extensions: 42222
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 6
Length of query: 249
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,268,006
Effective search space: 210488996
Effective search space used: 210488996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)