BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025737
(249 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HZQ|A Chain A, Crystal Structure Of Human Apolipoprotein D (Apod) In
Complex With Progesterone
pdb|2HZR|A Chain A, Crystal Structure Of Human Apolipoprotein D (Apod)
Length = 174
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 31/179 (17%)
Query: 26 KDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGY 85
++FD +Y GRW+E+ + F E+ C Q Y+ + ++ DG
Sbjct: 13 ENFDVNKYPGRWYEIEKIPTTF-----ENGRCIQANYSLXENG---KIKVLNQELRADGT 64
Query: 86 ITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFAL 145
+ I G E N+T+ K E+ +F F P PY ++ATDY+N+AL
Sbjct: 65 VNQIEG-------EATPVNLTEPAKLEV-------KFSW--FXPSAPYHILATDYENYAL 108
Query: 146 VSGAKDKS------FIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQ-DCEVIS 197
V S F I +R PE ++ K+ L + D K T Q +C +S
Sbjct: 109 VYSCTSISQSFHVDFAWILARNVALPPETVDSLKNILTSNNIDVKKXTVTDQVNCPKLS 167
>pdb|2WWP|A Chain A, Crystal Structure Of The Human Lipocalin-Type
Prostaglandin D Synthase Crystallised With The Substrate
Analog
9,11-Dideoxy-9alpha,11alpha-Epoxymethanoprostaglandin
F2alpha
pdb|2WWP|B Chain B, Crystal Structure Of The Human Lipocalin-Type
Prostaglandin D Synthase Crystallised With The Substrate
Analog
9,11-Dideoxy-9alpha,11alpha-Epoxymethanoprostaglandin
F2alpha
Length = 176
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 134 DVIATDYDNFALV--SGAK----DKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIK 187
V+ TDYD +AL+ G+K D +YSRT TP E EK+ ++ G+ + I
Sbjct: 98 SVVETDYDQYALLYSQGSKGPGEDFRMATLYSRTQTPRAELKEKFTAFCKAQGFTEDTIV 157
Query: 188 DTPQ 191
PQ
Sbjct: 158 FLPQ 161
>pdb|3O19|A Chain A, Structure-Function Analysis Of Human L-Prostaglandin D
Synthase Bound With Fatty Acid
pdb|3O22|A Chain A, Structure-Function Analysis Of Human L-Prostaglandin D
Synthase Bound With Fatty Acid
pdb|3O2Y|A Chain A, Structure-Function Analysis Of Human L-Prostaglandin D
Synthase Bound With Fatty Acid
pdb|3O2Y|B Chain B, Structure-Function Analysis Of Human L-Prostaglandin D
Synthase Bound With Fatty Acid
Length = 162
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 134 DVIATDYDNFALV--SGAK----DKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIK 187
V+ TDYD +AL+ G+K D +YSRT TP E EK+ ++ G+ + I
Sbjct: 91 SVVETDYDQYALLYSQGSKGPGEDFRMATLYSRTQTPRAELKEKFTAFCKAQGFTEDTIV 150
Query: 188 DTPQ 191
PQ
Sbjct: 151 FLPQ 154
>pdb|1Z24|A Chain A, The Molecular Structure Of Insecticyanin From The Tobacco
Hornworm Manduca Sexta L. At 2.6 A Resolution
Length = 189
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 28/123 (22%)
Query: 27 DFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYI 86
DFD ++G W E+A L QG+ CT Y +D +K ++ ++F +G +
Sbjct: 17 DFDLSAFAGAWHEIAKLPLENENQGK----CTIAEYKYDGKKASV-YNSFVSNGVKE--- 68
Query: 87 TGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFP----TLPFIPKEPYDVIATDYDN 142
+ G+++ P+ + K +GK + F + +P V+ATDY N
Sbjct: 69 -YMEGDLEIAPDAKYTK-----------QGKYVMTFKFGQRVVNLVPW----VLATDYKN 112
Query: 143 FAL 145
+A+
Sbjct: 113 YAI 115
>pdb|2XST|A Chain A, Crystal Structure Of The Human Lipocalin 15
Length = 161
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 72/172 (41%), Gaps = 33/172 (19%)
Query: 27 DFDPVRYSGRWFEV--ASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDG 84
DF+ ++SG W+ V AS R F G+ T+ + ++ + ++ G DG
Sbjct: 11 DFNAEKFSGLWYVVSMASDCRVFLGKKDHLSMSTRAIRPTEEGGLHVHME----FPGADG 66
Query: 85 YITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFA 144
C N D E + + + + R P L ++ ++ TDY +FA
Sbjct: 67 ----------C--------NQVDAEYLK-VGSEGHFRVPALGYLDVR---IVDTDYSSFA 104
Query: 145 LVSGAKD-----KSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQ 191
++ K+ + +Q+YSRT P+ ++ ++ + G + + PQ
Sbjct: 105 VLYIYKELEGALSTMVQLYSRTQDVSPQALKSFQDFYPTLGLPKDMMVMLPQ 156
>pdb|1GKA|B Chain B, The Molecular Basis Of The Coloration Mechanism In Lobster
Shell. Beta-Crustacyanin At 3.2 A Resolution
Length = 174
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 30/176 (17%)
Query: 27 DFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYI 86
+FD RY+GRW++ ++ + Q C Y + +V T
Sbjct: 20 NFDLRRYAGRWYQTHIIENAY----QPVTRCIHSNYEYSTNDYGFKVTT----------- 64
Query: 87 TGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFALV 146
G N +E L+ + +E + P+ + PY+VI TDY+ ++ V
Sbjct: 65 AGFNPN-----DEYLKIDFKVYPTKEFPAAHMLIDAPS---VFAAPYEVIETDYETYSCV 116
Query: 147 -----SGAKDKSFIQIYSRTP-TPGPEFIEKYKSYLANFGYDPNKIKDTPQDCEVI 196
+ F ++SRTP T GP +EK + G + +K E +
Sbjct: 117 YSCITTDNYKSEFAFVFSRTPQTSGPA-VEKTAAVFNKNGVEFSKFVPVSHTAECV 171
>pdb|3MBT|A Chain A, Structure Of Monomeric Blc From E. Coli
Length = 168
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 72/180 (40%), Gaps = 26/180 (14%)
Query: 21 RGMTA-KDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVH 79
RG+T +FD RY G W+E+A F +G E T Y+ +
Sbjct: 8 RGVTVVNNFDAKRYLGTWYEIARFDHRFE-RGLEKVTAT---YSLRDD------------ 51
Query: 80 GGPDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATD 139
GG + G + + E + T + +K + PF Y+VIA D
Sbjct: 52 GGLNVINKGYNPDRGMWQQSEGKAYFTGAPTRAALKVSFFG-----PFYGG--YNVIALD 104
Query: 140 YD-NFALVSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQDCEVISN 198
+ ALVSG D+ ++ I SRTPT E ++ + G+D +K Q S+
Sbjct: 105 REYRHALVSGP-DRDYLWILSRTPTISDEVKQEMLAVATREGFDVSKFIWVQQPGSAWSH 163
>pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Rad23
pdb|3M63|A Chain A, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Dsk2
Length = 968
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 70 AIQVDTFCVHGGPDGYITGIRGNVQC 95
A+Q++ FC++G YITGI NV
Sbjct: 108 ALQIENFCMNGAFINYITGIVSNVNS 133
>pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 70 AIQVDTFCVHGGPDGYITGIRGNVQC 95
A+Q++ FC++G YITGI NV
Sbjct: 122 ALQIENFCMNGAFINYITGIVSNVNS 147
>pdb|1EPA|A Chain A, Structure Of The Epididymal Retinoic Acid-Binding Protein
At 2.1 Angstroms Resolution
pdb|1EPA|B Chain B, Structure Of The Epididymal Retinoic Acid-Binding Protein
At 2.1 Angstroms Resolution
pdb|1EPB|A Chain A, Structure Of The Epididymal Retinoic Acid-Binding Protein
At 2.1 Angstroms Resolution
pdb|1EPB|B Chain B, Structure Of The Epididymal Retinoic Acid-Binding Protein
At 2.1 Angstroms Resolution
Length = 164
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 72/173 (41%), Gaps = 31/173 (17%)
Query: 26 KDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGY 85
KDFD ++ G W+E+A FA + T G+ +++ A+ V+
Sbjct: 4 KDFDISKFLGFWYEIA-----FASK-----MGTPGLAHKEEKMGAMVVE----------- 42
Query: 86 ITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFA- 144
++ N+ L ++ LEK +G +F K+ V ATDY +A
Sbjct: 43 ---LKENLLALTTTYYSEDHCVLEKVTATEGDGPAKFQVTRLSGKKEVVVEATDYLTYAI 99
Query: 145 -----LVSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQD 192
LV+GA ++ +++YSR+ E + ++ ++ G+ + D
Sbjct: 100 IDITSLVAGAVHRT-MKLYSRSLDDNGEALYNFRKITSDHGFSETDLYILKHD 151
>pdb|2ACO|A Chain A, Xray Structure Of Blc Dimer In Complex With Vaccenic Acid
pdb|2ACO|B Chain B, Xray Structure Of Blc Dimer In Complex With Vaccenic Acid
Length = 173
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 68/168 (40%), Gaps = 26/168 (15%)
Query: 21 RGMTA-KDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVH 79
RG+T +FD RY G W+E+A F +G E T Y+ +
Sbjct: 22 RGVTVVNNFDAKRYLGTWYEIARFDHRFE-RGLEKVTAT---YSLRDD------------ 65
Query: 80 GGPDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATD 139
GG + G + + E + T + +K + PF Y+VIA D
Sbjct: 66 GGLNVINKGYNPDRGMWQQSEGKAYFTGAPTRAALKVSFFG-----PFYGG--YNVIALD 118
Query: 140 YD-NFALVSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKI 186
+ ALV G D+ ++ I SRTPT E ++ + G+D +K
Sbjct: 119 REYRHALVCGP-DRDYLWILSRTPTISDEVKQEMLAVATREGFDVSKF 165
>pdb|1QWD|A Chain A, Crystal Structure Of A Bacterial Lipocalin, The Blc Gene
Product From E. Coli
pdb|1QWD|B Chain B, Crystal Structure Of A Bacterial Lipocalin, The Blc Gene
Product From E. Coli
Length = 177
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 30/170 (17%)
Query: 21 RGMTA-KDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVH 79
RG+T +FD RY G W+E+A F +G E T + ++ + V ++
Sbjct: 26 RGVTVVNNFDAKRYLGTWYEIARFDHRFE-RGLEKVTATYSL----RDDGGLNV----IN 76
Query: 80 GG--PDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIA 137
G PD RG Q + E + T + +K + PF Y+VIA
Sbjct: 77 KGYNPD------RGMWQ---QSEGKAYFTGAPTRAALKVSFFG-----PFYGG--YNVIA 120
Query: 138 TDYD-NFALVSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKI 186
D + ALV G D+ ++ I SRTPT E ++ + G+D +K
Sbjct: 121 LDREYRHALVCGP-DRDYLWILSRTPTISDEVKQEMLAVATREGFDVSKF 169
>pdb|3S26|A Chain A, Crystal Structure Of Murine Siderocalin (Lipocalin 2,
24p3)
Length = 190
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 135 VIATDYDNFALV---SGAKDKSF--IQIYSRTPTPGPEFIEKYKSYLANFGY-DPNKIKD 188
V TDY+ FA+V +++K + I +Y RT PE E++ + + G D N I
Sbjct: 112 VATTDYNQFAMVFFRKTSENKQYFKITLYGRTKELSPELKERFTRFAKSLGLKDDNIIFS 171
Query: 189 TPQD 192
P D
Sbjct: 172 VPTD 175
>pdb|2K23|A Chain A, Solution Structure Analysis Of The Rlcn2
Length = 178
Score = 30.8 bits (68), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 58/160 (36%), Gaps = 24/160 (15%)
Query: 32 RYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRG 91
R+ GRWF V + Q +Y +E + V + V G G R
Sbjct: 26 RFQGRWFVVGLAGNAVQKERQSRFTMYSTIYEL-QEDNSYNVTSILVRG------QGCRY 78
Query: 92 NVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFALV---SG 148
++ V + G + + P I V TDYD FA+V
Sbjct: 79 WIRTF--------VPSSRPGQFTLGNIH----SYPQIQSYDVQVADTDYDQFAMVFFQKT 126
Query: 149 AKDKSF--IQIYSRTPTPGPEFIEKYKSYLANFGYDPNKI 186
+++K + + +Y RT E E++ S+ + G N I
Sbjct: 127 SENKQYFKVTLYGRTKGLSDELKERFVSFAKSLGLKDNNI 166
>pdb|3EBK|A Chain A, Crystal Structure Of Major Allergens, Bla G 4 From
Cockroaches
pdb|3EBK|B Chain B, Crystal Structure Of Major Allergens, Bla G 4 From
Cockroaches
Length = 176
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 11/17 (64%), Positives = 15/17 (88%)
Query: 132 PYDVIATDYDNFALVSG 148
PY V+ATDY+N+A+V G
Sbjct: 95 PYSVLATDYENYAIVEG 111
>pdb|3EBW|A Chain A, Crystal Structure Of Major Allergens, Per A 4 From
Cockroaches
pdb|3EBW|B Chain B, Crystal Structure Of Major Allergens, Per A 4 From
Cockroaches
Length = 163
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 47/133 (35%), Gaps = 23/133 (17%)
Query: 22 GMTAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGG 81
G + D +Y G W+E L R ++ +C YT D E IQV +
Sbjct: 7 GTSFTGLDXTKYVGTWYE---LFRTPNSDEEDFTNCEYDKYTLD-ENGVIQVTSVAYTNS 62
Query: 82 PDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYD 141
G+IT G V E+ + D E Y + TDY
Sbjct: 63 IRGFITST-GTVPSWTEDTFDIAYGDDETW------------------SSTYFXVGTDYQ 103
Query: 142 NFALVSGAKDKSF 154
+++V+G D +
Sbjct: 104 TYSIVAGCLDNDY 116
>pdb|1W9H|A Chain A, The Structure Of A Piwi Protein From Archaeoglobus
Fulgidus.
pdb|2BGG|A Chain A, The Structure Of A Piwi Protein From Archaeoglobus
Fulgidus Complexed With A 16nt Sirna Duplex.
pdb|2BGG|B Chain B, The Structure Of A Piwi Protein From Archaeoglobus
Fulgidus Complexed With A 16nt Sirna Duplex.
pdb|2W42|A Chain A, The Structure Of A Piwi Protein From Archaeoglobus
Fulgidus Complexed With A 16nt Dna Duplex.
pdb|2W42|B Chain B, The Structure Of A Piwi Protein From Archaeoglobus
Fulgidus Complexed With A 16nt Dna Duplex
Length = 427
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 61 VYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKCYL 120
VY F K P V+ +H ++G R ++ + L++ V +L+KQEM+
Sbjct: 234 VYGFKKSNPDWDVEKLTLH------VSGKRPKMKDGETKILKETVEELKKQEMVSRDV-- 285
Query: 121 RFPTLPFIPKEPYDVIATDYDNFALVSGAKDK 152
++ L P+ V+ + F G K K
Sbjct: 286 KYAILHLNETHPFWVMGDPNNRFHPYEGTKVK 317
>pdb|2QJ0|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
Ufd2p
Length = 982
Score = 28.5 bits (62), Expect = 4.0, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 70 AIQVDTFCVHGGPDGYITGIRGNV 93
A+Q++ FC +G YITGI NV
Sbjct: 122 ALQIENFCXNGAFINYITGIVSNV 145
>pdb|2P23|A Chain A, Crystal Structure Of Human Fgf19
pdb|2P23|B Chain B, Crystal Structure Of Human Fgf19
Length = 194
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 28/107 (26%)
Query: 59 QGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKC 118
QG+ + +E A + + PDGY NV + L +++ +++++ K +
Sbjct: 88 QGLLQYSEEDCAFEEEI-----RPDGY------NVYRSEKHRLPVSLSSAKQRQLYKNRG 136
Query: 119 YLRF----PTLPFIPKEPYDV------------IATD-YDNFALVSG 148
+L P LP +P+EP D+ + TD D F LV+G
Sbjct: 137 FLPLSHFLPMLPMVPEEPEDLRGHLESDMFSSPLETDSMDPFGLVTG 183
>pdb|1PWA|A Chain A, Crystal Structure Of Fibroblast Growth Factor 19
Length = 162
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
Query: 59 QGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTDLEKQEMIKGKC 118
QG+ + +E A + + PDGY NV + L +++ +++++ K +
Sbjct: 76 QGLLQYSEEDCAFEEEIR-----PDGY------NVYRSEKHRLPVSLSSAKQRQLYKNRG 124
Query: 119 YLRF----PTLPFIPKEPYDV 135
+L P LP +P+EP D+
Sbjct: 125 FLPLSHFLPMLPMVPEEPEDL 145
>pdb|1I4U|A Chain A, The C1 Subunit Of Alpha-Crustacyanin
pdb|1I4U|B Chain B, The C1 Subunit Of Alpha-Crustacyanin
pdb|1OBQ|A Chain A, Apocrustacyanin C1 Crystals Grown In Space And Earth Using
Vapour Diffusion Geometry
pdb|1OBQ|B Chain B, Apocrustacyanin C1 Crystals Grown In Space And Earth Using
Vapour Diffusion Geometry
pdb|1OBU|A Chain A, Apocrustacyanin C1 Crystals Grown In Space And Earth Using
Vapour Diffusion Geometry
pdb|1OBU|B Chain B, Apocrustacyanin C1 Crystals Grown In Space And Earth Using
Vapour Diffusion Geometry
Length = 181
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 132 PYDVIATDYDNFALVSGAKDKSFIQ------IYSRTPTPGPEFIEKYKSYLANFGYDPNK 185
P ++ TDY N+A + D +F I+SR+ ++++K ++ N D +
Sbjct: 104 PLVILETDYSNYACLYSCIDYNFGYHSDFSFIFSRSANLADQYVKKCEAAFKNINVDTTR 163
Query: 186 IKDTPQ 191
T Q
Sbjct: 164 FVKTVQ 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,829,715
Number of Sequences: 62578
Number of extensions: 341833
Number of successful extensions: 649
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 629
Number of HSP's gapped (non-prelim): 29
length of query: 249
length of database: 14,973,337
effective HSP length: 96
effective length of query: 153
effective length of database: 8,965,849
effective search space: 1371774897
effective search space used: 1371774897
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)