Query 025737
Match_columns 249
No_of_seqs 155 out of 1205
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 08:59:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025737.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025737hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4824 Apolipoprotein D/Lipoc 100.0 3.1E-43 6.8E-48 295.8 12.6 188 9-217 23-224 (224)
2 PF08212 Lipocalin_2: Lipocali 100.0 2.2E-37 4.7E-42 253.2 16.2 142 28-191 1-143 (143)
3 COG3040 Blc Bacterial lipocali 100.0 2.2E-36 4.7E-41 249.6 15.9 145 24-192 27-172 (174)
4 PRK10477 outer membrane lipopr 100.0 1.2E-34 2.5E-39 245.3 15.4 152 17-192 23-175 (177)
5 PF00061 Lipocalin: Lipocalin 99.7 2.4E-17 5.2E-22 131.8 9.5 132 34-191 1-142 (144)
6 PF07137 VDE: Violaxanthin de- 99.0 7.4E-09 1.6E-13 88.0 13.7 151 23-195 29-190 (198)
7 PF03973 Triabin: Triabin; In 99.0 1.9E-09 4E-14 89.1 9.9 121 17-163 10-138 (148)
8 PF02087 Nitrophorin: Nitropho 98.7 4.8E-07 1E-11 75.3 14.0 158 21-196 4-172 (178)
9 PLN02372 violaxanthin de-epoxi 98.5 2E-06 4.2E-11 80.6 13.7 150 24-196 197-359 (455)
10 PF11032 ApoM: Apolipoprotein 97.7 0.0011 2.4E-08 56.7 13.7 42 152-196 141-185 (186)
11 COG3914 Spy Predicted O-linked 63.6 18 0.00038 36.4 6.0 38 153-192 460-497 (620)
12 PF00356 LacI: Bacterial regul 62.2 5 0.00011 26.4 1.4 28 157-184 19-46 (46)
13 PRK09283 delta-aminolevulinic 52.8 17 0.00036 33.9 3.6 64 165-234 57-126 (323)
14 cd00384 ALAD_PBGS Porphobilino 50.9 19 0.00042 33.3 3.7 64 165-234 49-118 (314)
15 PF11423 Repressor_Mnt: Regula 48.8 14 0.0003 22.1 1.6 10 234-243 18-27 (30)
16 KOG4626 O-linked N-acetylgluco 48.0 31 0.00066 35.4 4.8 34 153-190 789-822 (966)
17 PRK13384 delta-aminolevulinic 47.2 21 0.00046 33.2 3.4 64 165-234 59-128 (322)
18 PRK11678 putative chaperone; P 46.2 52 0.0011 31.9 6.1 61 170-245 387-447 (450)
19 cd04824 eu_ALAD_PBGS_cysteine_ 44.6 28 0.00062 32.3 3.8 64 165-234 49-121 (320)
20 PF10346 Con-6: Conidiation pr 42.8 35 0.00076 21.5 2.8 21 160-180 15-35 (36)
21 PF07215 DUF1419: Protein of u 40.9 14 0.0003 29.0 1.0 14 29-42 37-50 (111)
22 TIGR02986 restrict_Alw26I type 37.8 58 0.0013 31.2 4.8 92 151-246 27-135 (424)
23 COG0113 HemB Delta-aminolevuli 36.2 43 0.00093 31.1 3.6 64 165-234 59-130 (330)
24 TIGR03067 Planc_TIGR03067 Plan 33.8 2.2E+02 0.0048 21.9 10.3 94 29-149 3-96 (107)
25 PF04498 Pox_VP8_L4R: Poxvirus 28.2 16 0.00036 31.6 -0.4 26 220-245 188-213 (218)
26 smart00354 HTH_LACI helix_turn 28.2 55 0.0012 22.9 2.4 28 158-185 21-48 (70)
27 PRK10727 DNA-binding transcrip 27.0 53 0.0012 29.5 2.7 31 156-186 20-50 (343)
28 PF00490 ALAD: Delta-aminolevu 26.9 58 0.0013 30.4 2.9 63 166-234 56-126 (324)
29 cd04823 ALAD_PBGS_aspartate_ri 26.8 79 0.0017 29.4 3.7 64 165-234 52-123 (320)
30 PRK10703 DNA-binding transcrip 26.2 51 0.0011 29.5 2.4 29 157-185 21-49 (341)
31 PRK09492 treR trehalose repres 26.0 61 0.0013 28.5 2.8 29 156-184 23-51 (315)
32 PF12992 DUF3876: Domain of un 25.9 1.6E+02 0.0034 22.5 4.6 21 24-44 6-26 (95)
33 PF07409 GP46: Phage protein G 24.1 88 0.0019 24.8 3.1 27 151-178 42-68 (116)
34 KOG4746 Small nuclear RNA acti 23.6 30 0.00066 33.1 0.4 49 200-249 187-238 (423)
35 cd01392 HTH_LacI Helix-turn-he 23.4 69 0.0015 20.5 2.0 28 159-186 19-46 (52)
36 PF14488 DUF4434: Domain of un 23.1 1.8E+02 0.0039 24.2 4.9 55 152-206 3-72 (166)
37 PRK09526 lacI lac repressor; R 22.6 72 0.0016 28.5 2.6 29 157-185 25-53 (342)
38 PRK14987 gluconate operon tran 22.5 73 0.0016 28.4 2.6 59 157-217 25-92 (331)
39 PRK10423 transcriptional repre 22.4 61 0.0013 28.7 2.1 29 157-185 18-46 (327)
40 PRK10401 DNA-binding transcrip 21.7 69 0.0015 28.8 2.3 29 157-185 21-49 (346)
41 TIGR01481 ccpA catabolite cont 21.7 72 0.0016 28.3 2.4 29 157-185 21-49 (329)
42 PF13844 Glyco_transf_41: Glyc 21.1 94 0.002 30.5 3.2 35 153-191 315-349 (468)
43 PRK10014 DNA-binding transcrip 21.0 94 0.002 27.7 3.1 29 157-185 26-54 (342)
No 1
>KOG4824 consensus Apolipoprotein D/Lipocalin [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=3.1e-43 Score=295.77 Aligned_cols=188 Identities=41% Similarity=0.639 Sum_probs=162.0
Q ss_pred CCCCCcccCCCCCCCCccCCCccCcccceEEEEeecCcccCCCCCCceeeEEEEEEeCCCCcEEEEeeEEeCCCCCcEEe
Q 025737 9 GSDERSGMLMMMRGMTAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITG 88 (249)
Q Consensus 9 ~~~~~~~~~~C~~~~~v~dFDl~rY~G~WYEIar~p~~fe~~~~~~~~c~~a~Ytl~~~~g~i~V~n~~~~~~~~g~~~~ 88 (249)
..+++.+.+.||+.+++++||++||+|+|||||++|..||.+ ..|++..|++...+|.|+|.|.|++ ++||++..
T Consensus 23 a~gqa~~lg~cpnypv~knFnv~RylGrWYEVas~p~~fe~~----~gctt~~y~~~nkngkI~Vln~~v~-r~dG~~n~ 97 (224)
T KOG4824|consen 23 AAGQAIALGECPNYPVAKNFNVERYLGRWYEVASFPRGFEGK----GGCTTGAYTFDNKNGKIHVLNECVH-RPDGKINF 97 (224)
T ss_pred cccceEeeccCCCCccccCCChhhhcceeeeeeccccccccC----CCceeeeeEecCCCceEEEeeeeee-cCCCccce
Confidence 446678999999999999999999999999999999999854 2499999999877999999999998 58999999
Q ss_pred eeeEEEEcCchhhhhhhhhhhhhhcccceEEEecCC-------CCCCCCCCeEEEEEcCCCEEEEEecC------CCcEE
Q 025737 89 IRGNVQCLPEEELEKNVTDLEKQEMIKGKCYLRFPT-------LPFIPKEPYDVIATDYDNFALVSGAK------DKSFI 155 (249)
Q Consensus 89 i~G~a~~~~~~~~~~~~~~~~~q~~~~gkl~v~f~~-------~pf~~~~~Y~Vl~TDYd~YAIV~sc~------~~~~l 155 (249)
|+|.|+++++.. ....+++++.. .+| ...|||+.|||++||++|+|- +++++
T Consensus 98 ieG~atpvn~~s-------------~k~e~kf~~~~p~~~~~~l~~--~~iy~Vl~tdyenya~~ysc~alisl~h~df~ 162 (224)
T KOG4824|consen 98 IEGKATPVNEDS-------------DKAELKFEFQEPIFEKCFLRF--PPIYFVLGTDYENYADDYSCHALISLKHKDFL 162 (224)
T ss_pred eeeeeeecCCch-------------hhhcceeEEecCchHhhccCC--CCCcceecccHhheeccccccceeccCCCceE
Confidence 999999998532 12333443321 222 568999999999999999884 56899
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhcCCCCCCcEEcCC-CCCcCChHHHHHHhcccchhhHhhcc
Q 025737 156 QIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQ-DCEVISNSQLAAMMSMSGMQQALTNQ 217 (249)
Q Consensus 156 WILSRtp~ls~~~l~~~~~~l~~~G~d~s~l~~t~Q-~C~~~~~~~l~~~~~~~~~~~~~~~~ 217 (249)
|||||+|++.++.+++++++|.+.|||+++|+.|+| +|+..+ ..++|||+||||.+.|+++
T Consensus 163 wIlsRtpn~epEt~~klkn~l~~~gyDpeKl~~Tpq~dcp~~s-~~~~~~~~~~~~~~sl~~~ 224 (224)
T KOG4824|consen 163 WILSRTPNMEPETIAKLKNKLAEEGYDPEKLHDTPQSDCPPES-AEAAADMKGPGMEKSLFGK 224 (224)
T ss_pred EEEecCCCCChHHHHHHHHHHHHcCCCHHHhccCCccCCChhh-hhhHHhccCcchhhhhccC
Confidence 999999999999999999999999999999999999 699855 5788899999999999874
No 2
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=100.00 E-value=2.2e-37 Score=253.22 Aligned_cols=142 Identities=37% Similarity=0.622 Sum_probs=112.6
Q ss_pred CCccCcccceEEEEeecCcccCCCCCCceeeEEEEEEeCCCCcEEEEeeEEeCCCCCcEEeeeeEEEEcCchhhhhhhhh
Q 025737 28 FDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTD 107 (249)
Q Consensus 28 FDl~rY~G~WYEIar~p~~fe~~~~~~~~c~~a~Ytl~~~~g~i~V~n~~~~~~~~g~~~~i~G~a~~~~~~~~~~~~~~ 107 (249)
||++||+|+||||||+|+.|| ++|.|++++|++.+ +|.|.|.|+|++ .+|....++|+|++.++.
T Consensus 1 ~Dl~rY~G~WYEiar~p~~~q----~~~~~~~a~Yt~~~-dg~i~V~n~~~~--~~g~~~~~~g~a~~~~~~-------- 65 (143)
T PF08212_consen 1 VDLDRYMGTWYEIARYPNFFQ----RGCVCVTAEYTLRD-DGTISVRNSCRR--PDGKIKTIRGTATVVDPS-------- 65 (143)
T ss_dssp --CCCC-EEEEEEEEE--CCC----TT-ECEEEEEEE-T-TS-EEEEEEEEE--TTTCCCEEEEEEEESSBT--------
T ss_pred CChHHcCEeeeEEEEECCccc----ceeeeeeeeEEEcC-CCEEEEEEEEEc--CCCCEEEEEeEEEEcCCC--------
Confidence 799999999999999999995 78999999999997 899999999997 578888999999997753
Q ss_pred hhhhhcccceEEEecCCCCCCCCCCeEEEEEcCC-CEEEEEecCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCc
Q 025737 108 LEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYD-NFALVSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKI 186 (249)
Q Consensus 108 ~~~q~~~~gkl~v~f~~~pf~~~~~Y~Vl~TDYd-~YAIV~sc~~~~~lWILSRtp~ls~~~l~~~~~~l~~~G~d~s~l 186 (249)
.+|+|+|+|+..++.+.++||||+|||+ .|+||+ +++++++|||||+|+++++.+++++++++++|||+++|
T Consensus 66 ------~~~~l~V~f~~~~~~~~~~YwVl~~D~dY~~~iv~-~~~~~~~WILsR~p~~~~~~~~~~~~~~~~~G~d~~~l 138 (143)
T PF08212_consen 66 ------GPAKLKVRFPGIPFPPKGNYWVLYTDYDYSWAIVG-SPDREYLWILSRTPQLSEETYAEILDRAKQQGYDVSKL 138 (143)
T ss_dssp ------TSSEEEEESST---TEEEEEEEEEEBTTSSEEEEE-ECCCCEEEEEESSSS--HHHHHHHHHHHHHTT--GGGE
T ss_pred ------CccEEEEEEeccccCCCcceEEEEEcCCccEEEEe-cCCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCHHHe
Confidence 3789999997544444789999999999 577774 57999999999999999999999999999999999999
Q ss_pred EEcCC
Q 025737 187 KDTPQ 191 (249)
Q Consensus 187 ~~t~Q 191 (249)
++++|
T Consensus 139 ~~~~Q 143 (143)
T PF08212_consen 139 IWTPQ 143 (143)
T ss_dssp EE---
T ss_pred EECCC
Confidence 99998
No 3
>COG3040 Blc Bacterial lipocalin [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=2.2e-36 Score=249.58 Aligned_cols=145 Identities=28% Similarity=0.472 Sum_probs=131.9
Q ss_pred CccCCCccCcccceEEEEeecCcccCCCCCCceeeEEEEEEeCCCCcEEEEeeEEeCCCCCcEEeeeeEEEEcCchhhhh
Q 025737 24 TAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEK 103 (249)
Q Consensus 24 ~v~dFDl~rY~G~WYEIar~p~~fe~~~~~~~~c~~a~Ytl~~~~g~i~V~n~~~~~~~~g~~~~i~G~a~~~~~~~~~~ 103 (249)
++.+||++||+|+||||||+|..|+ ++|..++|+|++.+ ++.|.|.|.|+....+ .++.++|+|++++..
T Consensus 27 ~~~~~dl~~Y~G~WyEvaR~p~~f~----~gc~~vtA~Y~l~d-~~~I~V~n~c~~~~~~-~~~~ieGkA~i~~~~---- 96 (174)
T COG3040 27 PVNNFDLQRYLGKWYEVARLPMRFE----KGCVQVTATYSLRD-DGGISVINRCRTGDGG-KWSQIEGKAKIVDNA---- 96 (174)
T ss_pred cccccchhhcceeeeeeecccchhh----hcceeeEeEEEEec-CCceEEEeccccCCCC-CceeecceEEEecCc----
Confidence 5777999999999999999999996 78999999999997 8999999999976432 788999999998763
Q ss_pred hhhhhhhhhcccceEEEecCCCCCCCCCCeEEEEEcCC-CEEEEEecCCCcEEEEEeCCCCCCHHHHHHHHHHHHhcCCC
Q 025737 104 NVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYD-NFALVSGAKDKSFIQIYSRTPTPGPEFIEKYKSYLANFGYD 182 (249)
Q Consensus 104 ~~~~~~~q~~~~gkl~v~f~~~pf~~~~~Y~Vl~TDYd-~YAIV~sc~~~~~lWILSRtp~ls~~~l~~~~~~l~~~G~d 182 (249)
..++++|+|. .|| .++|||++.|.| +||||.+ |+++++|||||+|++|++.+++++++++++|||
T Consensus 97 ----------~~a~LkVsF~-~pF--~g~Y~Vl~~d~eYs~aiVgs-Pdr~ylWlLsRtP~~s~~~~~~ml~~ak~~Gfd 162 (174)
T COG3040 97 ----------TRAKLKVSFF-GPF--YGDYWVLALDPEYSWAIVGS-PDREYLWLLSRTPTLSQETLKRMLEIAKRRGFD 162 (174)
T ss_pred ----------cccEEEEEec-CCc--cccEEEEEECCCccEEEEeC-CCcceEEEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 3689999995 588 499999999999 7999965 899999999999999999999999999999999
Q ss_pred CCCcEEcCCC
Q 025737 183 PNKIKDTPQD 192 (249)
Q Consensus 183 ~s~l~~t~Q~ 192 (249)
.+++++++|.
T Consensus 163 v~~li~~~~~ 172 (174)
T COG3040 163 VSKLIFVQQP 172 (174)
T ss_pred cceeEecCCC
Confidence 9999999985
No 4
>PRK10477 outer membrane lipoprotein Blc; Provisional
Probab=100.00 E-value=1.2e-34 Score=245.32 Aligned_cols=152 Identities=24% Similarity=0.352 Sum_probs=133.9
Q ss_pred CCCCCCCCccCCCccCcccceEEEEeecCcccCCCCCCceeeEEEEEEeCCCCcEEEEeeEEeCCCCCcEEeeeeEEEEc
Q 025737 17 LMMMRGMTAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCL 96 (249)
Q Consensus 17 ~~C~~~~~v~dFDl~rY~G~WYEIar~p~~fe~~~~~~~~c~~a~Ytl~~~~g~i~V~n~~~~~~~~g~~~~i~G~a~~~ 96 (249)
+.|..+.++++||++||+|+|||||++|+.|| ++|.|++++|++.+ +|+|.|.|+|... .+|+.+.+.|+|+..
T Consensus 23 ~~~~~~~~~~~fDl~ry~G~WYeIar~~~~fe----~~~~~~~a~Y~~~~-~g~i~V~n~~~~~-~~g~~~~~~g~a~~~ 96 (177)
T PRK10477 23 TPPKGVTVVNNFDAKRYLGTWYEIARFDHRFE----RGLEKVTATYSLRD-DGGLNVINKGYNP-DRGMWQESEGKAYFT 96 (177)
T ss_pred CCCCCCcccCccCHHHhccHHHHhhcCCchhh----cCceeEEEEEEECC-CCcEEEEEeeEcC-CCCCEEEEEEEEEec
Confidence 34567889999999999999999999999995 78999999999997 8999999999853 358889999999887
Q ss_pred CchhhhhhhhhhhhhhcccceEEEecCCCCCCCCCCeEEEEEcCC-CEEEEEecCCCcEEEEEeCCCCCCHHHHHHHHHH
Q 025737 97 PEEELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYD-NFALVSGAKDKSFIQIYSRTPTPGPEFIEKYKSY 175 (249)
Q Consensus 97 ~~~~~~~~~~~~~~q~~~~gkl~v~f~~~pf~~~~~Y~Vl~TDYd-~YAIV~sc~~~~~lWILSRtp~ls~~~l~~~~~~ 175 (249)
.+. .+++++|+|. .|+ .++|||+++|+| +||||++ ++++++|||||+|+++++.+++++++
T Consensus 97 ~~~--------------~~~~~~v~f~-~~~--~~~Y~v~~~d~dY~~aiv~~-~~~~~~wIlsR~p~l~~~~~~~~~~~ 158 (177)
T PRK10477 97 GAP--------------TRAALKVSFF-GPF--YGGYNVIALDREYRHALVCG-PDRDYLWILSRTPTISDEVKQQMLAV 158 (177)
T ss_pred CCC--------------CCeEEEEEec-CCc--ccceEEEEEcCCCCEEEEEc-CCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 653 3689999994 565 579999888877 4999965 58999999999999999999999999
Q ss_pred HHhcCCCCCCcEEcCCC
Q 025737 176 LANFGYDPNKIKDTPQD 192 (249)
Q Consensus 176 l~~~G~d~s~l~~t~Q~ 192 (249)
++++|||.++|++++|.
T Consensus 159 ~~~~G~d~~~l~~~~q~ 175 (177)
T PRK10477 159 ATREGFDVSKLIWVKQP 175 (177)
T ss_pred HHHcCCCHHHeEECCCC
Confidence 99999999999999985
No 5
>PF00061 Lipocalin: Lipocalin / cytosolic fatty-acid binding protein family fatty acid-binding protein signature lipocalin signature; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 1I05_A 1MUP_A 2LB6_A 1I04_A 1I06_A 1DC9_A 1URE_A 1AEL_A 1T8V_A 1ICM_A ....
Probab=99.72 E-value=2.4e-17 Score=131.85 Aligned_cols=132 Identities=28% Similarity=0.405 Sum_probs=102.1
Q ss_pred ccceEEEEeec-----CcccCCCCCCceeeEEEEEEeCCCCcEEEEeeEEeCCCCCcEEeeeeEEEEcCchhhhhhhhhh
Q 025737 34 SGRWFEVASLK-----RGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTDL 108 (249)
Q Consensus 34 ~G~WYEIar~p-----~~fe~~~~~~~~c~~a~Ytl~~~~g~i~V~n~~~~~~~~g~~~~i~G~a~~~~~~~~~~~~~~~ 108 (249)
+|+||+|+... ..+. ....|....+++.+ ++.+.+......+ +........+...
T Consensus 1 ~G~Wy~v~~as~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~c~~~~~~~~~~------------ 60 (144)
T PF00061_consen 1 AGKWYEVALASDCPEFEEEK----KELKCFPVVIKPLA-NGNLPVTFTSKRG---GQCVTITVTFKKT------------ 60 (144)
T ss_dssp SEEEEEEEEEESSGGHHHHH----HHTTEEEEEEEEHH-TTEEEEEEEEEET---TEEEEEEEEEEEE------------
T ss_pred CceeEEEEEEeCCcchhhhc----cccccEEEEEEeec-CCCeEEEEEEecC---CEEEEEEEeEEec------------
Confidence 69999999874 2221 23689999999865 7999999887754 3333333333321
Q ss_pred hhhhcccceEEEecCCCCCCCCCCeEEEEEcCCCEEEEEecCC-----CcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCC
Q 025737 109 EKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFALVSGAKD-----KSFIQIYSRTPTPGPEFIEKYKSYLANFGYDP 183 (249)
Q Consensus 109 ~~q~~~~gkl~v~f~~~pf~~~~~Y~Vl~TDYd~YAIV~sc~~-----~~~lWILSRtp~ls~~~l~~~~~~l~~~G~d~ 183 (249)
..+|+|.+.|.. .....+++|++|||++|||++.|.. ...+|||+|++.++++.++++.++++++|++.
T Consensus 61 ----~~~g~~~~~~~~--~~~~~~~~v~~tdy~~yai~~~~~~~~g~~~~~~~l~~R~~~l~~~~~~~f~~~~~~~gi~~ 134 (144)
T PF00061_consen 61 ----EEPGKFTVEFSE--YPGGNDFWVLDTDYDNYAIVYSCKKDNGKHTIVAWLLSRTPELSPEALEKFKKFAKSLGIDE 134 (144)
T ss_dssp ----EETTEEEEEEEE--STTEEEEEEEEEESSTEEEEEEEEEETTEEEEEEEEEESSSEEEHHHHHHHHHHHHHTTETG
T ss_pred ----ccCCccceeeec--cccccceeeeccCCCCEEEEEEEccCCCceEEEEEEEcCCCcCCHHHHHHHHHHHHhCCCCH
Confidence 247899999753 2124589999999999999999965 24579999999999999999999999999999
Q ss_pred CCcEEcCC
Q 025737 184 NKIKDTPQ 191 (249)
Q Consensus 184 s~l~~t~Q 191 (249)
++++.+.|
T Consensus 135 ~~i~~~~~ 142 (144)
T PF00061_consen 135 ENIVRTFQ 142 (144)
T ss_dssp GCEEEEEE
T ss_pred HeEEECCC
Confidence 99999876
No 6
>PF07137 VDE: Violaxanthin de-epoxidase (VDE); InterPro: IPR010788 This family represents a conserved region approximately 350 residues long within plant violaxanthin de-epoxidase (VDE). In higher plants, violaxanthin de-epoxidase forms part of a conserved system that dissipates excess energy as heat in the light-harvesting complexes of photosystem II (PSII), thus protecting them from photo-inhibitory damage [].; GO: 0046422 violaxanthin de-epoxidase activity, 0055114 oxidation-reduction process, 0009507 chloroplast; PDB: 3CQN_B 3CQR_A.
Probab=99.03 E-value=7.4e-09 Score=87.95 Aligned_cols=151 Identities=19% Similarity=0.314 Sum_probs=91.8
Q ss_pred CCccCCCccCcccceEEEEeecCcccCCCCCCceeeEEEEEEeCCCCcEEEEeeEEeCCCCCcEEeeeeEEEEcCchhhh
Q 025737 23 MTAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELE 102 (249)
Q Consensus 23 ~~v~dFDl~rY~G~WYEIar~p~~fe~~~~~~~~c~~a~Ytl~~~~g~i~V~n~~~~~~~~g~~~~i~G~a~~~~~~~~~ 102 (249)
..|++||+..|.|+||-++.+-..|. -..|..-.|... .+.+...-..+...++|..-...-.-+.+..
T Consensus 29 ~~v~~Fd~~~f~G~Wyit~GlNp~fD-----~FdCQ~h~F~~~--~~kl~~~~~wRi~~pdggf~~r~~~q~fvqD---- 97 (198)
T PF07137_consen 29 VLVKSFDPKDFEGKWYITAGLNPTFD-----TFDCQLHEFHTE--KDKLVGKINWRIPTPDGGFFTRSAVQRFVQD---- 97 (198)
T ss_dssp GS-S---GGGG-EEEEEEEESSTTTT-----TTSEEEEEEEEE--TTEEEEEEEEEEE-TTS-EEEEEEEEEEEE-----
T ss_pred HhhccCCHhHcCceEEEecCCCCCcc-----ccccccceeecC--CCeEEEEEEEEeecCCCCceeccceeEeeeC----
Confidence 46899999999999999998876672 258999899874 4677666555555667655332222222211
Q ss_pred hhhhhhhhhhcccceEEEecC-CCCCCCCCCeEEEEEc----CCCEEEEEecCC------CcEEEEEeCCCCCCHHHHHH
Q 025737 103 KNVTDLEKQEMIKGKCYLRFP-TLPFIPKEPYDVIATD----YDNFALVSGAKD------KSFIQIYSRTPTPGPEFIEK 171 (249)
Q Consensus 103 ~~~~~~~~q~~~~gkl~v~f~-~~pf~~~~~Y~Vl~TD----Yd~YAIV~sc~~------~~~lWILSRtp~ls~~~l~~ 171 (249)
...||.|.-+=. +.-+ ..+.+||+.+ .+.|.+||-... ..-+.||+|++.++++.+.+
T Consensus 98 ---------~~~Pg~lyn~dneyL~y--qddWyIl~~~~~~~~~~~vfVyYrG~ndawdgYgGAvVYtrs~~lP~s~~p~ 166 (198)
T PF07137_consen 98 ---------PSQPGILYNHDNEYLHY--QDDWYILGSKIEDKPDDFVFVYYRGRNDAWDGYGGAVVYTRSPTLPESIVPE 166 (198)
T ss_dssp ---------SS-TTEEEE---GGG-E--EEEEEEEEEE-SSSTT-EEEEEEEEEEETTEEEEEEEEEESSSS--GGGHHH
T ss_pred ---------CCCCceEEecCCeeEEe--eeeEEEEeecccCCCCCEEEEEEccccccccccCceEEEeCCCCCChHHhHH
Confidence 124566654311 0111 4578899863 447999874321 13479999999999999999
Q ss_pred HHHHHHhcCCCCCCcEEcCCCCCc
Q 025737 172 YKSYLANFGYDPNKIKDTPQDCEV 195 (249)
Q Consensus 172 ~~~~l~~~G~d~s~l~~t~Q~C~~ 195 (249)
+.+.+++.|++.++++.++.+|..
T Consensus 167 l~~aa~k~G~d~~~F~~tDNtC~~ 190 (198)
T PF07137_consen 167 LRRAAKKAGIDFSKFIRTDNTCGP 190 (198)
T ss_dssp HHHHHHHTT--GGGSEE--STT--
T ss_pred HHHHHHHhCCCHHHeEEecCCCCC
Confidence 999999999999999999999984
No 7
>PF03973 Triabin: Triabin; InterPro: IPR005657 This family contains saliva proteins from haematophagous insects that counteract vertebrate host haemostasis events such as coagulation, vasoconstriction and platelet aggregation []. These include: Triabin, a serine-protease inhibitor. It forms a non-covalent complex with thrombin at a molecular ratio of 1:1, and inhibits thrombin-induced platelet aggregation. Pallidipin, an anticollagen induced platelet aggregation factor also found in Triatoma pallidipennis salivary homogenates. Procalin, the major allergen of Triatoma protracta saliva. All members of this family belong to MEROPS proteinase inhibitor family I59, clan IZ. ; GO: 0005488 binding, 0030682 evasion or tolerance of host defense response; PDB: 3EBK_B 1AVG_I.
Probab=99.03 E-value=1.9e-09 Score=89.08 Aligned_cols=121 Identities=20% Similarity=0.348 Sum_probs=63.0
Q ss_pred CCCCCCCCccCCCccCcc-cceEEEEeecCcccCCCCCCceeeEEEEEEeCCCCcEEEEeeEEeCCCCCcEEeeeeEEEE
Q 025737 17 LMMMRGMTAKDFDPVRYS-GRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQC 95 (249)
Q Consensus 17 ~~C~~~~~v~dFDl~rY~-G~WYEIar~p~~fe~~~~~~~~c~~a~Ytl~~~~g~i~V~n~~~~~~~~g~~~~i~G~a~~ 95 (249)
-.|....+|+|||.+||. |+||+...-... ....|- .|+...++|.+.+......++..+.. ++|
T Consensus 10 ~~c~~~~~m~nFd~~kFF~g~WyvTH~k~~t------~~tvCr--~y~t~~~~G~~~~v~~y~~~g~~~~~------v~C 75 (148)
T PF03973_consen 10 CKCQNYKAMSNFDPTKFFKGTWYVTHAKNGT------SSTVCR--KYKTSQKDGKTKIVGEYTFNGKKGYE------VKC 75 (148)
T ss_dssp TTGGC--S-TT--HHHHCSCEEEEECCSSSG------GCCEEE--EEEECTTT--EEEEEEEC-T-TS-TT------EEE
T ss_pred ccccCCCcccCCChHHccCccEEEEeccCCC------CCceee--EEEEEEcCCcEEEEEeeecccCcccE------EEE
Confidence 479999999999999999 999998653221 124666 45555445766655222222111111 122
Q ss_pred cCchhhhhhhhhhhhhhcccceEEEecC--CCCCCCCCCeEEEEEcCCCEEEEEecCC-----CcEEEEEeCCCC
Q 025737 96 LPEEELEKNVTDLEKQEMIKGKCYLRFP--TLPFIPKEPYDVIATDYDNFALVSGAKD-----KSFIQIYSRTPT 163 (249)
Q Consensus 96 ~~~~~~~~~~~~~~~q~~~~gkl~v~f~--~~pf~~~~~Y~Vl~TDYd~YAIV~sc~~-----~~~lWILSRtp~ 163 (249)
..... ....|+|.+.=. ....+ ..++.||+|||++|||||.|.. .+.++||.|+++
T Consensus 76 ~~~~~-----------~~~~g~~~f~C~~~~~~~f-~~~~sVi~TDY~nYAl~YrC~~~~~~~~DN~lVL~R~~~ 138 (148)
T PF03973_consen 76 SCTKK-----------SGKKGQFSFDCKSKNGTNF-QVDFSVIDTDYNNYALVYRCVTFESGKEDNYLVLQRNKN 138 (148)
T ss_dssp EEEEE-----------CTTCT-EEEEEECTT-GGC-EEEEEEEEE-TTSEEEEEEEEEESS---EEEEEEESS--
T ss_pred EeccC-----------cCCCccEEEEEEcCCCcEE-EEEEEEEEcCCCCEEEEEEccCCCCcccccEEEEEcCCC
Confidence 21110 112344444321 11111 5678999999999999999964 257899999984
No 8
>PF02087 Nitrophorin: Nitrophorin; InterPro: IPR002351 Nitrophorins are haemoproteins found in saliva of blood-feeding insects [, ]. Saliva of the blood-sucking bug Rhodnius prolixus (Triatomid bug) contains four homologous nitrophorins, designated NP1 to NP4 in order of their relative abundance in the glands []. As isolated, nitrophorins contain nitric oxide (NO) ligated to the ferric (FeIII) haem iron. Histamine, which is released by the host in response to tissue damage, is another nitrophorin ligand. Nitrophorins transport NO to the feeding site. Dilution, binding of histamine and increase in pH (from pH ~5 in salivary gland to pH ~7.4 in the host tissue) facilitate the release of NO into the tissue where it induces vasodilatation. The salivary nitrophorin from the hemipteran Cimex lectularius (Bed bug) has no sequence similarity to R. prolixus nitrophorins. It is suggested that the two classes of insect nitrophorins have arisen as a product of the convergent evolution []. 3-D structures of several nitrophorin complexes are known []. The nitrophorin structures reveal lipocalin-like eight-stranded beta-barrel, three alpha-helices and two disulphide bonds, with haem inserted into one end of the barrel. Members of the lipocalin family are known to bind a variety of small hydrophobic ligands, including biliverdin, in a similar fashion (see [] for review). The haem iron is ligated to His59. The position of His59 is restrained through water-mediated hydrogen bond to the carboxylate of Asp70. The His59-Fe bond is bent ~15 degrees out of the imidazole plane. Asp70 forms an unusual hydrogen bond with one of the haem propionates, suggesting the residue has an altered pKa. In NP1-histamine structure, the planes of His59 and histamine imidazole rings lie in an arrangement almost identical to that found in oxidised cytochrome b5. This entry represents the nitrophorin structural domain.; GO: 0051381 histamine binding, 0070026 nitric oxide binding; PDB: 1SXX_A 2OFM_X 1X8Q_A 3TGA_A 1SXU_A 1IKJ_A 1YWD_A 1X8N_A 3FLL_A 1X8O_A ....
Probab=98.72 E-value=4.8e-07 Score=75.32 Aligned_cols=158 Identities=20% Similarity=0.256 Sum_probs=76.7
Q ss_pred CCCCccCCCccCcc-cceEEEEeecCcccCCCCCCceeeEEEEEEeCCCCcEEEEeeEEeCCCCCc-EEeeeeEEEEcCc
Q 025737 21 RGMTAKDFDPVRYS-GRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGY-ITGIRGNVQCLPE 98 (249)
Q Consensus 21 ~~~~v~dFDl~rY~-G~WYEIar~p~~fe~~~~~~~~c~~a~Ytl~~~~g~i~V~n~~~~~~~~g~-~~~i~G~a~~~~~ 98 (249)
+..++.+||.++|. |.||++..+...-+.. .+.|.|-.. -.+ +|.|+=...... +.+. ..+..+.+...+.
T Consensus 4 Ni~~kt~fdk~k~F~g~WYvThyld~~~q~t-~~~ca~~~~---kt~-~GkvKE~~~~yn--p~~~~~~Y~is~~~l~s~ 76 (178)
T PF02087_consen 4 NIKPKTDFDKDKYFSGTWYVTHYLDTDPQVT-DKYCACFAP---KTS-NGKVKEALYHYN--PKNKTYFYDISESKLESN 76 (178)
T ss_dssp S----TT--HHHHTSSEEEEEEEEESSCCSS-SSEEEEEEE---EEE-TTEEEEEEEEEE--TTTTEEEEEEEEEEEEET
T ss_pred CccccCCCCHHHccCceEEEEEEecCCCCcc-hhhhhhhcc---ccC-CCceEEEEEEec--CCCceEEEEeeeeeccCC
Confidence 34589999999988 8999998875444432 345666531 122 677753333222 2221 1111122221110
Q ss_pred hhhhhhhhhhhhhhcccceEEEecCCCCCCCCCCe--EEEEEcCCCEEEEEecCC---C---cEEEEEeCCCCCCHHHHH
Q 025737 99 EELEKNVTDLEKQEMIKGKCYLRFPTLPFIPKEPY--DVIATDYDNFALVSGAKD---K---SFIQIYSRTPTPGPEFIE 170 (249)
Q Consensus 99 ~~~~~~~~~~~~q~~~~gkl~v~f~~~pf~~~~~Y--~Vl~TDYd~YAIV~sc~~---~---~~lWILSRtp~ls~~~l~ 170 (249)
. .+..++. .+...+|+-... +. ...-| .||+|| ++||||+.|-. . +.--||+|+.... .-+
T Consensus 77 g--~KytAk~-~~VdK~g~~~~~----~~-~~~sYt~tv~dtD-ds~AvV~~C~~~~~~~l~~LYaVlnRn~~~~--~~~ 145 (178)
T PF02087_consen 77 G--FKYTAKF-KTVDKDGKKIEE----AD-EKNSYTITVLDTD-DSYAVVHVCLHEGNKDLGDLYAVLNRNKNAN--PND 145 (178)
T ss_dssp T--SEEEEEE-EEE-TTS-EEE--------TTEEEEEEEEEEE-SSEEEEEEEEEETTEEEEEEEEEEESSTT------H
T ss_pred c--ceeeeee-eEecCCCCcccc----cc-cCceEEEEEEecC-CCeeEEEEecccCcccceeeeeeeecCCCCC--cch
Confidence 0 0000000 000111222221 11 12223 469999 78999999952 2 2236999999865 578
Q ss_pred HHHHHHHhcCCCCCCcEEcCCC-CCcC
Q 025737 171 KYKSYLANFGYDPNKIKDTPQD-CEVI 196 (249)
Q Consensus 171 ~~~~~l~~~G~d~s~l~~t~Q~-C~~~ 196 (249)
++...|.+.|+-.++|+.+.|. |.|.
T Consensus 146 KVksal~~vglkL~df~~~k~~~C~YD 172 (178)
T PF02087_consen 146 KVKSALDKVGLKLDDFTSTKDNKCKYD 172 (178)
T ss_dssp HHHHHHHHTT--GGGSEESTTST----
T ss_pred hHHHHHhhcceeehheeecccCCcccc
Confidence 8999999999999999999985 9984
No 9
>PLN02372 violaxanthin de-epoxidase
Probab=98.53 E-value=2e-06 Score=80.64 Aligned_cols=150 Identities=17% Similarity=0.318 Sum_probs=104.5
Q ss_pred CccCCCccCcccceEEEEeecCcccCCCCCCceeeEEEEEEeCCCCcEEEEeeEEeCCCCCcEEeeeeEEEE--cCchhh
Q 025737 24 TAKDFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQC--LPEEEL 101 (249)
Q Consensus 24 ~v~dFDl~rY~G~WYEIar~p~~fe~~~~~~~~c~~a~Ytl~~~~g~i~V~n~~~~~~~~g~~~~i~G~a~~--~~~~~~ 101 (249)
.+++||.+-|.|+||.++.+-..| .-..|..-.|...+ ++.+...-..+...++|.+-. +..+++ .++
T Consensus 197 lv~~F~~~~f~GsWyivaGlNP~y-----D~FdCQ~h~F~~~~-~~kl~~nl~wRv~tpdGgF~~-Rs~vq~fvqd~--- 266 (455)
T PLN02372 197 LVQNFDTADFNGRWYITSGLNKTF-----DTFDCQLHEFTAED-PDKLVGNLNWRINTPDGGFFT-RSAVQRFVQDP--- 266 (455)
T ss_pred HhhccCccccCccEEEecCCCCCC-----CcccccceeeecCC-CCceEEeeEEEEecCCCceEe-ecceeeeeccC---
Confidence 489999999999999999876555 23578888888764 677766655665567776432 222222 111
Q ss_pred hhhhhhhhhhhcccceEEEecCCCCCCC-CCCeEEEEEcCCC----EEEEEecCC------CcEEEEEeCCCCCCHHHHH
Q 025737 102 EKNVTDLEKQEMIKGKCYLRFPTLPFIP-KEPYDVIATDYDN----FALVSGAKD------KSFIQIYSRTPTPGPEFIE 170 (249)
Q Consensus 102 ~~~~~~~~~q~~~~gkl~v~f~~~pf~~-~~~Y~Vl~TDYd~----YAIV~sc~~------~~~lWILSRtp~ls~~~l~ 170 (249)
..||.|.-. ..-++- ..+.+||+...++ |++||-... ..-..+++|++.++++.+.
T Consensus 267 -----------~~P~il~n~--~NeyLhyqddWyIl~~k~~~~~~d~~lvYYrG~ndAwdgYgGAVvyTrs~~lP~~~~p 333 (455)
T PLN02372 267 -----------NQPGILYNH--DNEYLHYQDDWYILSSKIENKPDDYVFVYYRGRNDAWDGYGGAVVYTRSSTLPESIVP 333 (455)
T ss_pred -----------CCCceEEcC--CcceeecccceEEeeccccCCCCCeEEEEecccccccccccceEEEecCCCCChhhhH
Confidence 124444321 111111 3467899887665 999985422 1346899999999999999
Q ss_pred HHHHHHHhcCCCCCCcEEcCCCCCcC
Q 025737 171 KYKSYLANFGYDPNKIKDTPQDCEVI 196 (249)
Q Consensus 171 ~~~~~l~~~G~d~s~l~~t~Q~C~~~ 196 (249)
++.+.+++-|+|-++++.++.+|...
T Consensus 334 ~L~~Aa~kvG~df~~F~~tDNsCgpe 359 (455)
T PLN02372 334 ELEKAAKKVGRDFSDFVRTDNTCGPE 359 (455)
T ss_pred HHHHHHHHcCCCHHHheeeCCCCCCC
Confidence 99999999999999999999999643
No 10
>PF11032 ApoM: Apolipoprotein M (ApoM); InterPro: IPR022734 ApoM is a 25 kDa plasma protein associated with high-density lipoproteins (HDLs). ApoM is important in the formation of pre-ss-HDL and also in increasing cholesterol efflux from macrophage foam cells []. Lipoproteins consist of lipids solubilized by apolipoproteins. ApoM lacks an external amphipathic motif and is uniquely secreted to plasma without cleavage of its terminal signal peptide []. ; PDB: 2XKL_A 2WEX_A 2YG2_B 2WEW_A.
Probab=97.74 E-value=0.0011 Score=56.72 Aligned_cols=42 Identities=26% Similarity=0.513 Sum_probs=26.8
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCcEEcCCC---CCcC
Q 025737 152 KSFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQD---CEVI 196 (249)
Q Consensus 152 ~~~lWILSRtp~ls~~~l~~~~~~l~~~G~d~s~l~~t~Q~---C~~~ 196 (249)
...+.||||+++++++.++++++.++=+|+. |..+|++ |++.
T Consensus 141 ~~rllLysR~~~~~~~~lEeFk~q~~Cl~~~---~l~~p~~~~~C~~~ 185 (186)
T PF11032_consen 141 YQRLLLYSRSPKLEEEELEEFKAQTECLGFK---FLLTPRQQEACKLE 185 (186)
T ss_dssp EEEEEEEESSSS--HHHHHHHHHHHHHTT-----EEE----S------
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHhhhccCcE---EEECccccCcCccC
Confidence 4457899999999999999999999999987 7777664 8763
No 11
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=63.56 E-value=18 Score=36.36 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=33.0
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCcEEcCCC
Q 025737 153 SFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQD 192 (249)
Q Consensus 153 ~~lWILSRtp~ls~~~l~~~~~~l~~~G~d~s~l~~t~Q~ 192 (249)
+.+||+.-. ..+++.+.+++.+++.|+|.++|++.+..
T Consensus 460 Svl~L~~~~--~~~~~~~~l~~la~~~Gv~~eRL~f~p~~ 497 (620)
T COG3914 460 SVLLLKAGG--DDAEINARLRDLAEREGVDSERLRFLPPA 497 (620)
T ss_pred cEEEEecCC--CcHHHHHHHHHHHHHcCCChhheeecCCC
Confidence 568998876 46899999999999999999999998753
No 12
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=62.22 E-value=5 Score=26.45 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=22.9
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCCC
Q 025737 157 IYSRTPTPGPEFIEKYKSYLANFGYDPN 184 (249)
Q Consensus 157 ILSRtp~ls~~~l~~~~~~l~~~G~d~s 184 (249)
+|...+.++++..+++.+.++++||-++
T Consensus 19 ~ln~~~~vs~~tr~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 19 VLNGPPRVSEETRERILEAAEELGYRPN 46 (46)
T ss_dssp HHTTCSSSTHHHHHHHHHHHHHHTB-SS
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHCCCCC
Confidence 3455678999999999999999999763
No 13
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=52.80 E-value=17 Score=33.89 Aligned_cols=64 Identities=16% Similarity=0.280 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcEEcCCC----C--CcCChHHHHHHhcccchhhHhhccCCCCccCCccccCCcch
Q 025737 165 GPEFIEKYKSYLANFGYDPNKIKDTPQD----C--EVISNSQLAAMMSMSGMQQALTNQFPDLELKSPLALNPFTS 234 (249)
Q Consensus 165 s~~~l~~~~~~l~~~G~d~s~l~~t~Q~----C--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (249)
+-+.+.+..+.+.++|+.-=-|.-++.. + .+..++.+...++ +|+..||+|.+=..|.++||||
T Consensus 57 s~d~l~~~v~~~~~~Gi~av~LFgv~~~Kd~~gs~A~~~~g~v~rair------~iK~~~p~l~vi~DVcLc~YT~ 126 (323)
T PRK09283 57 SIDLLVKEAEEAVELGIPAVALFGVPELKDEDGSEAYNPDGLVQRAIR------AIKKAFPELGVITDVCLDEYTS 126 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCcCCCCCcccccccCCCCHHHHHHH------HHHHhCCCcEEEEeeeccCCCC
Confidence 3455666777788889863333333321 1 1223344443333 6899999999999999999998
No 14
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=50.86 E-value=19 Score=33.33 Aligned_cols=64 Identities=14% Similarity=0.239 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcEEcCCC----C--CcCChHHHHHHhcccchhhHhhccCCCCccCCccccCCcch
Q 025737 165 GPEFIEKYKSYLANFGYDPNKIKDTPQD----C--EVISNSQLAAMMSMSGMQQALTNQFPDLELKSPLALNPFTS 234 (249)
Q Consensus 165 s~~~l~~~~~~l~~~G~d~s~l~~t~Q~----C--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (249)
+-+.+.+..+.+.++|+.-=-|.-++.. . .+..+..+...+ .+|++.||+|.+=..|.++||||
T Consensus 49 s~d~l~~~~~~~~~~Gi~~v~LFgv~~~Kd~~gs~A~~~~g~v~~ai------r~iK~~~p~l~vi~DvcLc~YT~ 118 (314)
T cd00384 49 SVDSLVEEAEELADLGIRAVILFGIPEHKDEIGSEAYDPDGIVQRAI------RAIKEAVPELVVITDVCLCEYTD 118 (314)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCcccccCCCChHHHHH------HHHHHhCCCcEEEEeeeccCCCC
Confidence 4566667777788889863333333321 1 122333333333 36899999999999999999997
No 15
>PF11423 Repressor_Mnt: Regulatory protein Mnt; InterPro: IPR024421 Mnt is a repressor which is involved in the genetic switch between lysogenic and lytic growth in bacteriophage P22. The C-terminal domain of the protein consists of a dimer of two antiparallel coiled coils with a right handed twist, which is both stronger and has closer inter-helical separation compared with those found in left-handed coiled coils []. This entry is represented by Bacteriophage P22, Mnt. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 1QEY_C 1MNT_B.
Probab=48.80 E-value=14 Score=22.14 Aligned_cols=10 Identities=40% Similarity=0.657 Sum_probs=7.8
Q ss_pred hhHHHHHHHH
Q 025737 234 SVLDTLKKLL 243 (249)
Q Consensus 234 ~~~~~~~~~~ 243 (249)
-||||||.+.
T Consensus 18 ~VfetLK~~Y 27 (30)
T PF11423_consen 18 MVFETLKDMY 27 (30)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3899999864
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.03 E-value=31 Score=35.38 Aligned_cols=34 Identities=26% Similarity=0.701 Sum_probs=27.9
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCcEEcC
Q 025737 153 SFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTP 190 (249)
Q Consensus 153 ~~lWILSRtp~ls~~~l~~~~~~l~~~G~d~s~l~~t~ 190 (249)
+.+|+| |-|-..+ ++++..+.++|++++++++++
T Consensus 789 S~Lwll-rfPa~ge---~rf~ty~~~~Gl~p~riifs~ 822 (966)
T KOG4626|consen 789 SVLWLL-RFPAVGE---QRFRTYAEQLGLEPDRIIFSP 822 (966)
T ss_pred ceeEEE-eccccch---HHHHHHHHHhCCCccceeecc
Confidence 557877 6666665 789999999999999999876
No 17
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=47.19 E-value=21 Score=33.17 Aligned_cols=64 Identities=13% Similarity=0.116 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcEEcCCC----CC--cCChHHHHHHhcccchhhHhhccCCCCccCCccccCCcch
Q 025737 165 GPEFIEKYKSYLANFGYDPNKIKDTPQD----CE--VISNSQLAAMMSMSGMQQALTNQFPDLELKSPLALNPFTS 234 (249)
Q Consensus 165 s~~~l~~~~~~l~~~G~d~s~l~~t~Q~----C~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (249)
+-+.+.+..+.+.++|+.-=-|.-++.. +. +..++.+...++ +|++.||+|.+-..|.++||||
T Consensus 59 sid~l~~~~~~~~~~Gi~~v~lFgv~~~Kd~~gs~A~~~~g~v~~air------~iK~~~pdl~vi~DVcLc~YT~ 128 (322)
T PRK13384 59 PESALADEIERLYALGIRYVMPFGISHHKDAKGSDTWDDNGLLARMVR------TIKAAVPEMMVIPDICFCEYTD 128 (322)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccCCCChHHHHHH------HHHHHCCCeEEEeeeecccCCC
Confidence 3556677777788889863322223321 11 223344443333 6999999999999999999997
No 18
>PRK11678 putative chaperone; Provisional
Probab=46.16 E-value=52 Score=31.92 Aligned_cols=61 Identities=21% Similarity=0.245 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCCCCCcEEcCCCCCcCChHHHHHHhcccchhhHhhccCCCCccCCccccCCcchhHHHHHHHHHh
Q 025737 170 EKYKSYLANFGYDPNKIKDTPQDCEVISNSQLAAMMSMSGMQQALTNQFPDLELKSPLALNPFTSVLDTLKKLLEL 245 (249)
Q Consensus 170 ~~~~~~l~~~G~d~s~l~~t~Q~C~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (249)
+.+.+.+++.|+.++.++.+--.+ +||+.++.+.+.||...+ +.-|||+||-.-|.--.+.
T Consensus 387 ~~i~~~L~~a~~~~d~VvLvGGsS------------riP~V~~~l~~~fg~~~v---~~g~~~~sVa~Gla~~a~~ 447 (450)
T PRK11678 387 ELVQLALDQAQVKPDVIYLTGGSA------------RSPLIRAALAQQLPGIPI---VGGDDFGSVTAGLARWAQV 447 (450)
T ss_pred HHHHHHHHHcCCCCCEEEEcCccc------------chHHHHHHHHHHCCCCcE---EeCCCcchHHHHHHHHHHh
Confidence 334455666777665554442222 578999999999987554 3679999998877654443
No 19
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=44.56 E-value=28 Score=32.30 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcEEcCCC-----C----CcCChHHHHHHhcccchhhHhhccCCCCccCCccccCCcch
Q 025737 165 GPEFIEKYKSYLANFGYDPNKIKDTPQD-----C----EVISNSQLAAMMSMSGMQQALTNQFPDLELKSPLALNPFTS 234 (249)
Q Consensus 165 s~~~l~~~~~~l~~~G~d~s~l~~t~Q~-----C----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (249)
+-+.+.+..+.+.++|+.-=-|.-++.+ + .+..+..+...++ +++..||+|.+=..|.++||||
T Consensus 49 s~d~l~~~~~~~~~~Gi~~v~LFgv~~~~~Kd~~~gs~a~~~~g~v~~air------~iK~~~pdl~vi~Dvclc~YT~ 121 (320)
T cd04824 49 GVNRLEEFLRPLVAKGLRSVILFGVPLKPGKDDRSGSAADDEDGPVIQAIK------LIREEFPELLIACDVCLCEYTS 121 (320)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCccccCCcCccccccCCCChHHHHHH------HHHHhCCCcEEEEeeeccCCCC
Confidence 4556667777778889863333333311 1 1223344444443 6999999999999999999997
No 20
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=42.77 E-value=35 Score=21.50 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=18.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcC
Q 025737 160 RTPTPGPEFIEKYKSYLANFG 180 (249)
Q Consensus 160 Rtp~ls~~~l~~~~~~l~~~G 180 (249)
.+|..|++.++..+++|+++|
T Consensus 15 ~NPnvSeeaK~~A~~~Le~~g 35 (36)
T PF10346_consen 15 HNPNVSEEAKQHAREKLEEMG 35 (36)
T ss_pred cCCCcCHHHHHHHHHHHHHcc
Confidence 478999999999999999876
No 21
>PF07215 DUF1419: Protein of unknown function (DUF1419); InterPro: IPR009862 This family consists of several bacterial proteins of around 110 residues in length. Members of this family seem to be specific to Agrobacterium species and to Rhizobium loti (Mesorhizobium loti). The function of this family is unknown.
Probab=40.87 E-value=14 Score=28.97 Aligned_cols=14 Identities=43% Similarity=1.132 Sum_probs=11.0
Q ss_pred CccCcccceEEEEe
Q 025737 29 DPVRYSGRWFEVAS 42 (249)
Q Consensus 29 Dl~rY~G~WYEIar 42 (249)
+-..|.|.|+||+.
T Consensus 37 ~~~ly~GeWFEI~e 50 (111)
T PF07215_consen 37 DSALYAGEWFEITE 50 (111)
T ss_pred cccccccccEEecc
Confidence 34559999999974
No 22
>TIGR02986 restrict_Alw26I type II restriction endonuclease, Alw26I/Eco31I/Esp3I family. Members of this family are type II restriction endonucleases of the Alw26I/Eco31I/Esp3I family. Characterized specificities of three members are GGTCTC, CGTCTC, and the shared subsequence GTCTC.
Probab=37.75 E-value=58 Score=31.24 Aligned_cols=92 Identities=18% Similarity=0.205 Sum_probs=60.5
Q ss_pred CCcEEEEEeCCCCCC-----HHHHHHHHHHHHhcCCCCC----------CcEEcCCC-CCcCCh-HHHHHHhcccchhhH
Q 025737 151 DKSFIQIYSRTPTPG-----PEFIEKYKSYLANFGYDPN----------KIKDTPQD-CEVISN-SQLAAMMSMSGMQQA 213 (249)
Q Consensus 151 ~~~~lWILSRtp~ls-----~~~l~~~~~~l~~~G~d~s----------~l~~t~Q~-C~~~~~-~~l~~~~~~~~~~~~ 213 (249)
+.+.-|.-+-.+..+ ..-++=..+.++++|+++. .|..|.+. |..|.- =.+.+++--.-.-..
T Consensus 27 dG~I~W~~~s~~~~gF~~~~q~R~aWw~~Ka~elGi~~~~~~~~s~~ar~IHPT~~kpC~~CG~~m~i~Y~Ypn~~~~~r 106 (424)
T TIGR02986 27 DGRISWQVSSKKTTGFYTYYQARRAWWEQKADELGIPSIENGRYSKAARLIHPTGVKPCQTCGKTMSLGYSYPNHNFAKR 106 (424)
T ss_pred CCceEEEecCCCCccchHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHhCCCCCcchHhcCCeeeeeeecCcHHHHHH
Confidence 556678888888777 6667777789999999955 35666664 665421 112222111122345
Q ss_pred hhccCCCCccCCccccCCcchhHHHHHHHHHhh
Q 025737 214 LTNQFPDLELKSPLALNPFTSVLDTLKKLLELY 246 (249)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (249)
|++.||++.. .-+|-+++.|-||.|+..+
T Consensus 107 l~k~~~~~~~----~~~~~~~I~d~l~~l~~~~ 135 (424)
T TIGR02986 107 LKKTFPDETF----KDQLIEDIYDILKSLVSEN 135 (424)
T ss_pred Hhcccccccc----ccchHHHHHHHHHHHHhhc
Confidence 7888887653 4578899999999987654
No 23
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=36.21 E-value=43 Score=31.10 Aligned_cols=64 Identities=16% Similarity=0.260 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcEEcCC----C-CC---cCChHHHHHHhcccchhhHhhccCCCCccCCccccCCcch
Q 025737 165 GPEFIEKYKSYLANFGYDPNKIKDTPQ----D-CE---VISNSQLAAMMSMSGMQQALTNQFPDLELKSPLALNPFTS 234 (249)
Q Consensus 165 s~~~l~~~~~~l~~~G~d~s~l~~t~Q----~-C~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (249)
+-+.+.+..+.+..+|+..=-|.-++. + |- +.....+.-. -.+|++.||+|++-..|.++||||
T Consensus 59 s~d~l~~~~~~~~~lGi~av~LFgvp~~~~Kd~~gs~A~~~~givqra------vr~ik~~~p~l~iitDvcLceyT~ 130 (330)
T COG0113 59 SLDRLVEEAEELVDLGIPAVILFGVPDDSKKDETGSEAYDPDGIVQRA------VRAIKEAFPELVVITDVCLCEYTD 130 (330)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEeCCCcccccCcccccccCCCChHHHH------HHHHHHhCCCeEEEeeecccCCcC
Confidence 344555566667778986433333441 1 21 2233333322 347999999999999999999997
No 24
>TIGR03067 Planc_TIGR03067 Planctomycetes uncharacterized domain TIGR03067. This domain occurs in several species, mostly from the Planctomycetes division of the bacteria. It is expanded into a paralogous family of at least twenty-five members in Gemmata obscuriglobus UQM 2246. This family appears related to TIGR03066, which also is expanded into a large paralogous family in Gemmata obscuriglobus.
Probab=33.77 E-value=2.2e+02 Score=21.87 Aligned_cols=94 Identities=22% Similarity=0.199 Sum_probs=48.1
Q ss_pred CccCcccceEEEEeecCcccCCCCCCceeeEEEEEEeCCCCcEEEEeeEEeCCCCCcEEeeeeEEEEcCchhhhhhhhhh
Q 025737 29 DPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDKEKPAIQVDTFCVHGGPDGYITGIRGNVQCLPEEELEKNVTDL 108 (249)
Q Consensus 29 Dl~rY~G~WYEIar~p~~fe~~~~~~~~c~~a~Ytl~~~~g~i~V~n~~~~~~~~g~~~~i~G~a~~~~~~~~~~~~~~~ 108 (249)
|+++.+|+|-.++.-.+.-... .....+ ..+.+.. +.+.|... ++. ...|+.+.-..
T Consensus 3 dl~~LqG~W~~v~~e~~G~~~~-~~~~~~--~~~~~~g--~~~~~~~~------~~~--~~~~~~~Ld~~---------- 59 (107)
T TIGR03067 3 DLEKLQGTWKVVAAEKGGKAVP-ADKGDR--LVWTFKG--DKLTVKDG------EGD--QGKGTFKLDPA---------- 59 (107)
T ss_pred hHHhhCcEEEEEEEEeCCCcCC-hhhhcc--eEEEEeC--CEEEEEcC------CCc--ceeEEEEECCC----------
Confidence 6889999999998654433211 011111 3555543 55666431 121 12455554222
Q ss_pred hhhhcccceEEEecCCCCCCCCCCeEEEEEcCCCEEEEEec
Q 025737 109 EKQEMIKGKCYLRFPTLPFIPKEPYDVIATDYDNFALVSGA 149 (249)
Q Consensus 109 ~~q~~~~gkl~v~f~~~pf~~~~~Y~Vl~TDYd~YAIV~sc 149 (249)
..|-.+.++....|.-...-.-|...|-|..-|.++.
T Consensus 60 ----~~Pk~id~~~~~g~~~g~~~~gIY~l~gd~L~vC~~~ 96 (107)
T TIGR03067 60 ----ANPKTIDLTSPDGPDKGKTIKGIYKLDGDTLTVCFSG 96 (107)
T ss_pred ----CCccEEEEEccCCCCCCCEEEEEEEEcCCEEEEEECC
Confidence 1355666665433332223356777776666666643
No 25
>PF04498 Pox_VP8_L4R: Poxvirus nucleic acid binding protein VP8/L4R; InterPro: IPR007586 The 25 kDa product of Vaccinia virus gene L4R is also known as VP8. VP8 is found in the cores of Vaccinia virions and is essential for the formation of transcriptionally competent viral particles. It binds both single stranded and double stranded DNA and RNA with similar affinities. Binding is thought to involve cooperative interactions between protein subunits. The protein is proteolytically cleaved during viral assembly at an Ala-Gly-Ala site. Possible roles for VP8 include packaging and maintaining the DNA genome in a transcribable configuration; binding ssDNA during transcription initiation; and cooperation with I8R protein to unwind early promoter regions. VP8 may also function in either transcription elongation or release of mRNA molecules from viral particles [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=28.22 E-value=16 Score=31.59 Aligned_cols=26 Identities=35% Similarity=0.608 Sum_probs=22.6
Q ss_pred CCccCCccccCCcchhHHHHHHHHHh
Q 025737 220 DLELKSPLALNPFTSVLDTLKKLLEL 245 (249)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (249)
+-+|..||.+|-|+-+||++||=+.|
T Consensus 188 ~~~lqepirL~dF~~lF~~vKK~i~L 213 (218)
T PF04498_consen 188 STPLQEPIRLNDFIELFDCVKKNIPL 213 (218)
T ss_pred cCCcCCceeHHHHHHHHHHHhhcCcc
Confidence 55688999999999999999997654
No 26
>smart00354 HTH_LACI helix_turn _helix lactose operon repressor.
Probab=28.20 E-value=55 Score=22.88 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=23.0
Q ss_pred EeCCCCCCHHHHHHHHHHHHhcCCCCCC
Q 025737 158 YSRTPTPGPEFIEKYKSYLANFGYDPNK 185 (249)
Q Consensus 158 LSRtp~ls~~~l~~~~~~l~~~G~d~s~ 185 (249)
|.-.+.++++..+++.+.++++||.++.
T Consensus 21 ln~~~~v~~~t~~~i~~~~~~~gy~~~~ 48 (70)
T smart00354 21 LNGNGRVSEETREKVLAAMEELGYIPNR 48 (70)
T ss_pred HCCCCCCCHHHHHHHHHHHHHhCCCCCH
Confidence 4455678999999999999999997653
No 27
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=27.00 E-value=53 Score=29.48 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=26.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhcCCCCCCc
Q 025737 156 QIYSRTPTPGPEFIEKYKSYLANFGYDPNKI 186 (249)
Q Consensus 156 WILSRtp~ls~~~l~~~~~~l~~~G~d~s~l 186 (249)
-+|...+.++++.++++.+.++++||-++..
T Consensus 20 rvLn~~~~Vs~~tr~rV~~~a~elgY~pn~~ 50 (343)
T PRK10727 20 RVINNSPKASEASRLAVHSAMESLSYHPNAN 50 (343)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHCCCCCHH
Confidence 3566777899999999999999999987643
No 28
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=26.94 E-value=58 Score=30.36 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCcEEc--CCC----CC--cCChHHHHHHhcccchhhHhhccCCCCccCCccccCCcch
Q 025737 166 PEFIEKYKSYLANFGYDPNKIKDT--PQD----CE--VISNSQLAAMMSMSGMQQALTNQFPDLELKSPLALNPFTS 234 (249)
Q Consensus 166 ~~~l~~~~~~l~~~G~d~s~l~~t--~Q~----C~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (249)
-+.+.+..+.+.++|+.-=-|.-+ +.. +. +..++.+.-.++ +|+..||+|.+-..|.++||||
T Consensus 56 id~l~~~v~~~~~~GI~~v~lFgvi~~~~Kd~~gs~a~~~~g~v~~air------~iK~~~pdl~vi~Dvclc~YT~ 126 (324)
T PF00490_consen 56 IDSLVKEVEEAVDLGIRAVILFGVIDPSKKDEEGSEAYNPDGLVQRAIR------AIKKAFPDLLVITDVCLCEYTS 126 (324)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEEE-SCSC-BSS-GGGGSTTSHHHHHHH------HHHHHSTTSEEEEEE-STTTBT
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeeCCcccCCcchhcccCCCChHHHHHH------HHHHhCCCcEEEEecccccccC
Confidence 566666777778889864333333 321 11 223344443333 6899999999999999999997
No 29
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=26.76 E-value=79 Score=29.44 Aligned_cols=64 Identities=19% Similarity=0.321 Sum_probs=40.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCCcEEc-C--C-C----CCcCChHHHHHHhcccchhhHhhccCCCCccCCccccCCcch
Q 025737 165 GPEFIEKYKSYLANFGYDPNKIKDT-P--Q-D----CEVISNSQLAAMMSMSGMQQALTNQFPDLELKSPLALNPFTS 234 (249)
Q Consensus 165 s~~~l~~~~~~l~~~G~d~s~l~~t-~--Q-~----C~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (249)
+-+.+.+..+.+.++|+.-=-|.-+ + + + ..+..+..+...+ .+++..||+|.+=..|.++||||
T Consensus 52 s~d~l~~~v~~~~~~Gi~~v~lFgv~~~~~KD~~gs~A~~~~g~v~~ai------r~iK~~~p~l~vi~DVclc~YT~ 123 (320)
T cd04823 52 SIDELLKEAEEAVDLGIPAVALFPVTPPELKSEDGSEAYNPDNLVCRAI------RAIKEAFPELGIITDVALDPYTS 123 (320)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCcccCCcccccccCCCChHHHHH------HHHHHhCCCcEEEEeeeccCCCC
Confidence 3456666667778889863333323 1 1 1 1122333333333 35899999999999999999997
No 30
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=26.21 E-value=51 Score=29.50 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=25.1
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCCCC
Q 025737 157 IYSRTPTPGPEFIEKYKSYLANFGYDPNK 185 (249)
Q Consensus 157 ILSRtp~ls~~~l~~~~~~l~~~G~d~s~ 185 (249)
+|...+.++++.++++.+.++++||-++.
T Consensus 21 vLn~~~~vs~~tr~~V~~~a~elgY~pn~ 49 (341)
T PRK10703 21 VINKTRFVAEETRNAVWAAIKELHYSPSA 49 (341)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHCCCcCH
Confidence 45667789999999999999999998863
No 31
>PRK09492 treR trehalose repressor; Provisional
Probab=25.99 E-value=61 Score=28.53 Aligned_cols=29 Identities=14% Similarity=0.372 Sum_probs=25.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHhcCCCCC
Q 025737 156 QIYSRTPTPGPEFIEKYKSYLANFGYDPN 184 (249)
Q Consensus 156 WILSRtp~ls~~~l~~~~~~l~~~G~d~s 184 (249)
-+|.+.+.++++..+++.+.++++||-++
T Consensus 23 rvLn~~~~vs~~tr~rV~~~a~elgY~pn 51 (315)
T PRK09492 23 RVLNNESGVSEETRERVEAVINQHGFSPS 51 (315)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHCCCcC
Confidence 35677888999999999999999999775
No 32
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=25.92 E-value=1.6e+02 Score=22.48 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=17.4
Q ss_pred CccCCCccCcccceEEEEeec
Q 025737 24 TAKDFDPVRYSGRWFEVASLK 44 (249)
Q Consensus 24 ~v~dFDl~rY~G~WYEIar~p 44 (249)
....|+++++.|.|=.+..-|
T Consensus 6 ~~~~~~l~~~~G~W~Sv~~~P 26 (95)
T PF12992_consen 6 ESNSFDLDKICGEWESVNGKP 26 (95)
T ss_pred cccccchheeEEEeEccCCCC
Confidence 456899999999998886655
No 33
>PF07409 GP46: Phage protein GP46; InterPro: IPR010877 This entry is represented by Bacteriophage Mu, Gp46. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.09 E-value=88 Score=24.75 Aligned_cols=27 Identities=15% Similarity=0.192 Sum_probs=19.1
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHh
Q 025737 151 DKSFIQIYSRTPTPGPEFIEKYKSYLAN 178 (249)
Q Consensus 151 ~~~~lWILSRtp~ls~~~l~~~~~~l~~ 178 (249)
-.+.+|+|.|.+.. +++...+++++++
T Consensus 42 iGSRLwlL~R~K~t-~~v~~~A~~ya~E 68 (116)
T PF07409_consen 42 IGSRLWLLRREKLT-PRVRRRAEDYAEE 68 (116)
T ss_pred cccceeEEEeecch-HHHHHHHHHHHHH
Confidence 35679999999854 5566666666654
No 34
>KOG4746 consensus Small nuclear RNA activating complex (SNAPc), subunit SNAP43 [RNA processing and modification]
Probab=23.63 E-value=30 Score=33.10 Aligned_cols=49 Identities=24% Similarity=0.448 Sum_probs=36.4
Q ss_pred HHHHHhcccchhhHhhc---cCCCCccCCccccCCcchhHHHHHHHHHhhhcC
Q 025737 200 QLAAMMSMSGMQQALTN---QFPDLELKSPLALNPFTSVLDTLKKLLELYFKK 249 (249)
Q Consensus 200 ~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (249)
-..|+|.-+.+++ |.. .+--++++..+.-+|..+-.++||++++-|+++
T Consensus 187 rvkaLvesdv~~~-l~~IH~~Y~~lK~k~gi~~~~l~~P~~elk~I~ek~~~q 238 (423)
T KOG4746|consen 187 RVKALVESDVFDE-LGVIHLEYSRLKLKAGITATPLSDPLEELKKIIEKQKKQ 238 (423)
T ss_pred HHHHHHhhHHHHH-HhhHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHH
Confidence 3445666555554 333 346778888888899999999999999999863
No 35
>cd01392 HTH_LacI Helix-turn-helix (HTH) DNA binding domain of the LacI family of transcriptional regulators. HTH-DNA binding domain of the LacI (lactose operon repressor) family of bacterial transcriptional regulators and their putative homologs found in plants. The LacI family has more than 500 members distributed among almost all bacterial species. The monomeric proteins of the LacI family contain common structural features that include a small DNA-binding domain with a helix-turn-helix motif in the N-terminus, a regulatory ligand-binding domain which exhibits the type I periplasmic binding protein fold in the C-terminus for oligomerization and for effector binding, and an approximately 18-amino acid linker connecting these two functional domains. In LacI-like transcriptional regulators, the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. When the C-terminal domain of the LacI family repre
Probab=23.40 E-value=69 Score=20.47 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=22.6
Q ss_pred eCCCCCCHHHHHHHHHHHHhcCCCCCCc
Q 025737 159 SRTPTPGPEFIEKYKSYLANFGYDPNKI 186 (249)
Q Consensus 159 SRtp~ls~~~l~~~~~~l~~~G~d~s~l 186 (249)
.-.+.+++....++.+.+.++||.++.+
T Consensus 19 ~g~~~vs~~~~~~i~~~~~~l~~~~~~~ 46 (52)
T cd01392 19 NGKPRVSEETRERVLAAAEELGYRPNAA 46 (52)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCCCCCHH
Confidence 3445788999999999999999987643
No 36
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=23.11 E-value=1.8e+02 Score=24.19 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=39.8
Q ss_pred CcEEEEEeC--CCCCCHHHHHHHHHHHHhcCCCCCCcEEcCC-------------CCCcCChHHHHHHhc
Q 025737 152 KSFIQIYSR--TPTPGPEFIEKYKSYLANFGYDPNKIKDTPQ-------------DCEVISNSQLAAMMS 206 (249)
Q Consensus 152 ~~~lWILSR--tp~ls~~~l~~~~~~l~~~G~d~s~l~~t~Q-------------~C~~~~~~~l~~~~~ 206 (249)
..++.+.++ ..+++++..++....+++.|+|.=-|.++.. .|...+.+.|+++++
T Consensus 3 GtF~q~~~~d~~~~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~ 72 (166)
T PF14488_consen 3 GTFLQPWSWDIHQNWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILD 72 (166)
T ss_pred eEEEccccchhhcCCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHH
Confidence 356777777 5699999999999999999998544444322 244445678888877
No 37
>PRK09526 lacI lac repressor; Reviewed
Probab=22.63 E-value=72 Score=28.45 Aligned_cols=29 Identities=21% Similarity=0.403 Sum_probs=25.3
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCCCC
Q 025737 157 IYSRTPTPGPEFIEKYKSYLANFGYDPNK 185 (249)
Q Consensus 157 ILSRtp~ls~~~l~~~~~~l~~~G~d~s~ 185 (249)
+|...+.++++..+++.+.++++||-++.
T Consensus 25 vLn~~~~vs~~tr~rV~~~a~elgY~pn~ 53 (342)
T PRK09526 25 VLNQASHVSAKTREKVEAAMAELNYVPNR 53 (342)
T ss_pred HhcCCCCCCHHHHHHHHHHHHHHCCCcCH
Confidence 45677789999999999999999998764
No 38
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=22.46 E-value=73 Score=28.38 Aligned_cols=59 Identities=17% Similarity=0.319 Sum_probs=38.2
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCCCCcEE---cCCC------CCcCChHHHHHHhcccchhhHhhcc
Q 025737 157 IYSRTPTPGPEFIEKYKSYLANFGYDPNKIKD---TPQD------CEVISNSQLAAMMSMSGMQQALTNQ 217 (249)
Q Consensus 157 ILSRtp~ls~~~l~~~~~~l~~~G~d~s~l~~---t~Q~------C~~~~~~~l~~~~~~~~~~~~~~~~ 217 (249)
+|...+.++++..+++++.++++||-++..-. ...+ .+..++.-...++. |.++++...
T Consensus 25 vLn~~~~vs~~tr~rV~~~a~elgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~--gi~~~~~~~ 92 (331)
T PRK14987 25 FLRNPEQVSVALRGKIAAALDELGYIPNRAPDILSNATSRAIGVLLPSLTNQVFAEVLR--GIESVTDAH 92 (331)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHhCCCccHHHHHHhhCCCCEEEEEeCCCcchhHHHHHH--HHHHHHHHC
Confidence 56677789999999999999999998764311 0010 11223344455566 777776654
No 39
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=22.40 E-value=61 Score=28.65 Aligned_cols=29 Identities=10% Similarity=0.288 Sum_probs=24.6
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCCCC
Q 025737 157 IYSRTPTPGPEFIEKYKSYLANFGYDPNK 185 (249)
Q Consensus 157 ILSRtp~ls~~~l~~~~~~l~~~G~d~s~ 185 (249)
+|...+.+++++++++++.++++||-++.
T Consensus 18 vLn~~~~vs~~tr~rV~~~a~~lgY~pn~ 46 (327)
T PRK10423 18 VINKDRFVSEAITAKVEAAIKELNYAPSA 46 (327)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHCCCccH
Confidence 34556779999999999999999998764
No 40
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=21.72 E-value=69 Score=28.79 Aligned_cols=29 Identities=17% Similarity=0.361 Sum_probs=25.1
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCCCC
Q 025737 157 IYSRTPTPGPEFIEKYKSYLANFGYDPNK 185 (249)
Q Consensus 157 ILSRtp~ls~~~l~~~~~~l~~~G~d~s~ 185 (249)
+|.+.+.++++..+++.+.++++||-++.
T Consensus 21 vLn~~~~Vs~~tr~kV~~~a~elgY~pn~ 49 (346)
T PRK10401 21 VLNNSALVSADTREAVMKAVSELGYRPNA 49 (346)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHCCCCCH
Confidence 45667789999999999999999998764
No 41
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=21.72 E-value=72 Score=28.28 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=24.9
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCCCC
Q 025737 157 IYSRTPTPGPEFIEKYKSYLANFGYDPNK 185 (249)
Q Consensus 157 ILSRtp~ls~~~l~~~~~~l~~~G~d~s~ 185 (249)
+|...+.++++.++++++.++++||-++.
T Consensus 21 vLn~~~~vs~~tr~rV~~~a~~lgY~pn~ 49 (329)
T TIGR01481 21 VVNGNPNVKPATRKKVLEVIKRLDYRPNA 49 (329)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHCCCCCH
Confidence 45666789999999999999999998753
No 42
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=21.13 E-value=94 Score=30.51 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=24.6
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHhcCCCCCCcEEcCC
Q 025737 153 SFIQIYSRTPTPGPEFIEKYKSYLANFGYDPNKIKDTPQ 191 (249)
Q Consensus 153 ~~lWILSRtp~ls~~~l~~~~~~l~~~G~d~s~l~~t~Q 191 (249)
..+||+. .+.. ..+.+++++.++|++++++++.+.
T Consensus 315 S~L~L~~-~~~~---~~~~l~~~~~~~Gv~~~Ri~f~~~ 349 (468)
T PF13844_consen 315 SRLWLLR-FPAS---GEARLRRRFAAHGVDPDRIIFSPV 349 (468)
T ss_dssp EEEEEEE-TSTT---HHHHHHHHHHHTTS-GGGEEEEE-
T ss_pred cEEEEee-CCHH---HHHHHHHHHHHcCCChhhEEEcCC
Confidence 5678885 3322 336778889999999999998764
No 43
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=21.04 E-value=94 Score=27.69 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=25.5
Q ss_pred EEeCCCCCCHHHHHHHHHHHHhcCCCCCC
Q 025737 157 IYSRTPTPGPEFIEKYKSYLANFGYDPNK 185 (249)
Q Consensus 157 ILSRtp~ls~~~l~~~~~~l~~~G~d~s~ 185 (249)
+|.+++.++++..+++++.++++||-++.
T Consensus 26 ~Ln~~~~vs~~tr~~V~~~a~elgY~p~~ 54 (342)
T PRK10014 26 VLSGKGRISTATGERVNQAIEELGFVRNR 54 (342)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHhCCCcCH
Confidence 46777889999999999999999998763
Done!