BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025738
         (249 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9UNA0|ATS5_HUMAN A disintegrin and metalloproteinase with thrombospondin motifs 5
           OS=Homo sapiens GN=ADAMTS5 PE=1 SV=2
          Length = 930

 Score = 34.7 bits (78), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 11/82 (13%)

Query: 158 MYCNGRKVGFAVRRKASGQNRLMLKMMQSITIG-AGVIPAGLGSSGPDSGEQIIYMRANY 216
           +Y  G KVG+ V    +G  R +L + +  ++G AG +PAG G+S P       + R   
Sbjct: 80  LYSGGGKVGYLVY---AGGRRFLLDLERDGSVGIAGFVPAGGGTSAPWRHRSHCFYR--- 133

Query: 217 EHMIGSADSESFHLINPDECAG 238
               G+ D     L   D C G
Sbjct: 134 ----GTVDGSPRSLAVFDLCGG 151


>sp|Q19848|VRK1_CAEEL Serine/threonine-protein kinase VRK1 OS=Caenorhabditis elegans
           GN=vrk-1 PE=1 SV=1
          Length = 610

 Score = 32.7 bits (73), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 1   MSKIRRFFLPCIFPTAADAQTTPAPKKRLSTSLRDDIDEPTNTKSAAADQEAQNPDQE-- 58
           M K+++     I  T++D + TP  +K+L+   ++ +    +T+  A  +E+ N D +  
Sbjct: 306 MGKLKKLVTDAIQKTSSDGKKTPTRQKKLAEEDKNAVTPKRSTRRLAVKEESDNKDNDEV 365

Query: 59  PTSPEDNST 67
              PE  +T
Sbjct: 366 EVKPEKKAT 374


>sp|P18162|MCP_IRV1 Major capsid protein OS=Tipula iridescent virus GN=MCP PE=1 SV=1
          Length = 464

 Score = 31.2 bits (69), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 163 RKVGFAVRRKASGQNRLMLKMMQSITIGAGVIPAGLGSSGPDSGEQIIYMRANYEHMIGS 222
           + + FAVR K S            +  GA V     GS  P +   +IY   N    +G+
Sbjct: 302 KALFFAVRNKTSAAEWSNYATSSPVVTGATVNYEPTGSFDPIANTTLIYENTN---RLGA 358

Query: 223 ADSESFHLINP 233
             S+ F LINP
Sbjct: 359 MGSDYFSLINP 369


>sp|P22166|MCP_IRV22 Major capsid protein OS=Simulium iridescent virus GN=MCP PE=1 SV=1
          Length = 472

 Score = 31.2 bits (69), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 163 RKVGFAVRRKASGQNRLMLKMMQSITIGAGVIPAGLGSSGPDSGEQIIYMRANYEHMIGS 222
           + + FAVR K S            +  GA V     GS  P +   +IY   N    +G+
Sbjct: 302 KALFFAVRNKTSAAEWSNYATSSPVVTGATVNYEPTGSFDPIANTTLIYENTN---RLGA 358

Query: 223 ADSESFHLINP 233
             S+ F LINP
Sbjct: 359 MGSDYFSLINP 369


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.134    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,988,859
Number of Sequences: 539616
Number of extensions: 3585058
Number of successful extensions: 10184
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 10171
Number of HSP's gapped (non-prelim): 26
length of query: 249
length of database: 191,569,459
effective HSP length: 115
effective length of query: 134
effective length of database: 129,513,619
effective search space: 17354824946
effective search space used: 17354824946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)