Query 025738
Match_columns 249
No_of_seqs 85 out of 102
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 08:59:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025738.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025738hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04759 DUF617: Protein of un 100.0 2.2E-96 5E-101 625.4 18.6 166 80-248 1-166 (166)
2 TIGR01570 A_thal_3588 uncharac 100.0 1.1E-94 2.5E-99 612.2 17.5 161 81-248 1-161 (161)
3 COG2514 Predicted ring-cleavag 52.5 6.7 0.00014 36.9 1.0 13 225-237 108-120 (265)
4 COG1886 FliN Flagellar motor s 40.5 27 0.00058 29.1 2.7 19 149-168 102-120 (136)
5 PF15566 Imm18: Immunity prote 38.6 3.9 8.5E-05 30.1 -2.2 34 208-242 3-36 (52)
6 PF12851 Tet_JBP: Oxygenase do 35.3 19 0.00042 30.8 1.1 31 155-185 1-35 (171)
7 PF02955 GSH-S_ATP: Prokaryoti 34.9 18 0.00039 31.3 0.9 23 157-180 88-110 (173)
8 PF08150 FerB: FerB (NUC096) d 24.9 48 0.001 25.9 1.6 19 150-169 5-23 (76)
9 PF12681 Glyoxalase_2: Glyoxal 23.3 47 0.001 23.7 1.2 11 226-236 93-103 (108)
10 COG1465 Predicted alternative 22.9 1.2E+02 0.0026 29.9 4.2 38 208-245 310-358 (376)
11 PF08531 Bac_rhamnosid_N: Alph 22.7 70 0.0015 26.9 2.3 16 154-169 14-29 (172)
12 TIGR01380 glut_syn glutathione 21.4 56 0.0012 29.9 1.7 34 158-196 211-244 (312)
No 1
>PF04759 DUF617: Protein of unknown function, DUF617; InterPro: IPR006460 This family of hypothetical plant proteins are defined by a region of about 170 amino acids found at the C terminus. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. At least 12 distinct members are found in Arabidopsis thaliana (Mouse-ear cress).
Probab=100.00 E-value=2.2e-96 Score=625.41 Aligned_cols=166 Identities=51% Similarity=0.915 Sum_probs=153.0
Q ss_pred eEEeeEeeeCCCceeeEEecCCCCCCCeeEEeecCchhHHHHHhhcCceeEEeeecCCCCcccccccCCCceeeceEEEE
Q 025738 80 MVIGTIFGHRRGHVWFCIQQDRVSMKPTLLLELSMPTNQLVKEMRCGLVRIALECARPESTERIEVTSCPLRLVPVWIMY 159 (249)
Q Consensus 80 ~vTGTlFG~RrGrV~faiQed~p~~~P~lLLELaipT~~L~kEM~~GlvRIALEcek~~~~~~~~~~~~~Ll~epvWtmy 159 (249)
+|||||||||||||+||||+| |++.|+||||||+||++|+|||++|+|||||||+|++...+. ..+.+||+||+|+||
T Consensus 1 rvtGTlFG~RrGrV~~aiQ~d-~~s~P~lllELa~pT~~L~~EM~~GlvRIaLEc~k~~~~~~~-~~~~~Ll~ep~W~my 78 (166)
T PF04759_consen 1 RVTGTLFGHRRGRVSFAIQED-PRSPPILLLELAMPTSALVREMASGLVRIALECEKRKGKSKG-AASGSLLEEPVWTMY 78 (166)
T ss_pred CcEEEEEecccceEEEEEecC-CCCCCeEEEEecCcHHHHHHHhhcCeEEEEEEecCCCCCCCc-ccccccccceeEEEE
Confidence 699999999999999999999 899999999999999999999999999999999997543221 124569999999999
Q ss_pred EcCceeeeeeeecCChhHHHHHHhccceeeccceecCCCCCCCCCCCcceeeEeeeceeeeecCCcceeeeeCCCCCCCC
Q 025738 160 CNGRKVGFAVRRKASGQNRLMLKMMQSITIGAGVIPAGLGSSGPDSGEQIIYMRANYEHMIGSADSESFHLINPDECAGQ 239 (249)
Q Consensus 160 CNGRKvGYAvRRe~t~~D~~VL~~l~~VSmGAGVLP~~~g~~~~~~dgElmYMRA~FERVVGSkDSEsfyMinPdG~~Gp 239 (249)
||||||||||||+||++||+||++|++|||||||||+. +....++|||||||||+|||||||+||||||||||||++||
T Consensus 79 CNGrK~GyAvRRe~t~~d~~vL~~l~~VS~GAGVlP~~-~~~~~~~~gel~YMRA~FERVVGS~DSEsfyminPdg~~Gp 157 (166)
T PF04759_consen 79 CNGRKVGYAVRREPTDDDLHVLELLRSVSMGAGVLPGG-GGGSGGGDGELMYMRARFERVVGSRDSESFYMINPDGNGGP 157 (166)
T ss_pred ECCceeeeeEEcCCCHHHHHHHHhhheeeecceeccCc-cccCCCCCceEeeeeeeeeeeeccCCcceeEEECCCCCCCc
Confidence 99999999999999999999999999999999999983 23345689999999999999999999999999999999999
Q ss_pred eeEEEEEec
Q 025738 240 EFSLFLLRS 248 (249)
Q Consensus 240 ELSIFflR~ 248 (249)
||||||+|+
T Consensus 158 ELSIFf~Rv 166 (166)
T PF04759_consen 158 ELSIFFLRV 166 (166)
T ss_pred eEEEEEEeC
Confidence 999999996
No 2
>TIGR01570 A_thal_3588 uncharacterized plant-specific domain TIGR01570. This model represents a region of about 170 amino acids found at the C-terminus of a family of plant proteins. These proteins typically have additional highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterized protein. At least 12 distinct members are found in Arabidopsis thaliana.
Probab=100.00 E-value=1.1e-94 Score=612.20 Aligned_cols=161 Identities=52% Similarity=0.896 Sum_probs=149.5
Q ss_pred EEeeEeeeCCCceeeEEecCCCCCCCeeEEeecCchhHHHHHhhcCceeEEeeecCCCCcccccccCCCceeeceEEEEE
Q 025738 81 VIGTIFGHRRGHVWFCIQQDRVSMKPTLLLELSMPTNQLVKEMRCGLVRIALECARPESTERIEVTSCPLRLVPVWIMYC 160 (249)
Q Consensus 81 vTGTlFG~RrGrV~faiQed~p~~~P~lLLELaipT~~L~kEM~~GlvRIALEcek~~~~~~~~~~~~~Ll~epvWtmyC 160 (249)
|||||||||||||+||||+| |++.|+||||||+||++|+|||++|+|||||||+|++.. ++.+||+||+|+|||
T Consensus 1 vtGTlfG~RrgrV~~~iQ~d-p~~~P~lllELa~pt~~L~~Em~~G~vRIaLEc~k~~~~-----~~~~ll~ep~W~myC 74 (161)
T TIGR01570 1 VTGTIFGYRKGRVNFCIQED-RRSLPILLLELAMPTSVLQKEMSSGLVRIALECETRKQD-----KDSKLLSEPVWTMYC 74 (161)
T ss_pred CeEEEecCCCCcceeeecCC-CCCCCeeeeeecCcHHHHHHHhhcCceeEEeeeeccccC-----CCccceeeeeEEEEE
Confidence 79999999999999999999 999999999999999999999999999999999997532 457899999999999
Q ss_pred cCceeeeeeeecCChhHHHHHHhccceeeccceecCCCCCCCCCCCcceeeEeeeceeeeecCCcceeeeeCCCCCCCCe
Q 025738 161 NGRKVGFAVRRKASGQNRLMLKMMQSITIGAGVIPAGLGSSGPDSGEQIIYMRANYEHMIGSADSESFHLINPDECAGQE 240 (249)
Q Consensus 161 NGRKvGYAvRRe~t~~D~~VL~~l~~VSmGAGVLP~~~g~~~~~~dgElmYMRA~FERVVGSkDSEsfyMinPdG~~GpE 240 (249)
|||||||||||+||++||+||++|++|||||||||+..+.. ..++||||||||+|||||||||||||||||||||+|||
T Consensus 75 NGrk~GyAvRR~~t~~d~~vL~~l~~VS~GAGVlP~~~~~~-~~~~gel~YMRA~FERVVGS~DSEsfyminPdg~~gpE 153 (161)
T TIGR01570 75 NGRKVGYAVKRSASEEDMTVLTALSKVSVGAGVLPCGKELG-GFDEDELMYMRASFERVVGSKDSESFYMINPEGNIGQE 153 (161)
T ss_pred CCceeeEeEecCCCHHHHHHHHhhheeeecceeccCCCCCC-CCCCceEEEEeeeeeEeccccCceeEEeECCCCCCCce
Confidence 99999999999999999999999999999999999643321 12349999999999999999999999999999999999
Q ss_pred eEEEEEec
Q 025738 241 FSLFLLRS 248 (249)
Q Consensus 241 LSIFflR~ 248 (249)
|||||+|+
T Consensus 154 LSIF~lR~ 161 (161)
T TIGR01570 154 LSIFFLRS 161 (161)
T ss_pred EEEEEEeC
Confidence 99999996
No 3
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=52.54 E-value=6.7 Score=36.86 Aligned_cols=13 Identities=31% Similarity=0.473 Sum_probs=11.9
Q ss_pred cceeeeeCCCCCC
Q 025738 225 SESFHLINPDECA 237 (249)
Q Consensus 225 SEsfyMinPdG~~ 237 (249)
|||+|+-||+||+
T Consensus 108 SEAlYl~DPEGNG 120 (265)
T COG2514 108 SEALYLEDPEGNG 120 (265)
T ss_pred heeeeecCCCCCe
Confidence 9999999999973
No 4
>COG1886 FliN Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=40.52 E-value=27 Score=29.13 Aligned_cols=19 Identities=42% Similarity=0.462 Sum_probs=15.8
Q ss_pred CceeeceEEEEEcCceeeee
Q 025738 149 PLRLVPVWIMYCNGRKVGFA 168 (249)
Q Consensus 149 ~Ll~epvWtmyCNGRKvGYA 168 (249)
++..+|+|- ++|||++||+
T Consensus 102 ~~~~~~VdI-~vNg~~Ig~G 120 (136)
T COG1886 102 KLAGEPVDI-LVNGRLIGRG 120 (136)
T ss_pred CcCCCceEE-EECCEEEEEE
Confidence 466788986 6999999996
No 5
>PF15566 Imm18: Immunity protein 18
Probab=38.57 E-value=3.9 Score=30.06 Aligned_cols=34 Identities=24% Similarity=0.440 Sum_probs=28.2
Q ss_pred ceeeEeeeceeeeecCCcceeeeeCCCCCCCCeeE
Q 025738 208 QIIYMRANYEHMIGSADSESFHLINPDECAGQEFS 242 (249)
Q Consensus 208 ElmYMRA~FERVVGSkDSEsfyMinPdG~~GpELS 242 (249)
+|.|+...-++.+++.+.+--|+|.|+ ++|-|||
T Consensus 3 gL~~L~~~l~~L~~~~~~~H~Hlmtp~-WgG~ELs 36 (52)
T PF15566_consen 3 GLELLQDQLENLQEKEPFDHEHLMTPD-WGGEELS 36 (52)
T ss_pred hHHHHHHHHHHHHhccCCCCceecccc-ccccccc
Confidence 477888888888888788888999995 7888887
No 6
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=35.29 E-value=19 Score=30.81 Aligned_cols=31 Identities=29% Similarity=0.463 Sum_probs=18.2
Q ss_pred eEEEEEcCceeee---eeee-cCChhHHHHHHhcc
Q 025738 155 VWIMYCNGRKVGF---AVRR-KASGQNRLMLKMMQ 185 (249)
Q Consensus 155 vWtmyCNGRKvGY---AvRR-e~t~~D~~VL~~l~ 185 (249)
.|.||-||+|.+= +.|+ +.+.++..+++.|+
T Consensus 1 ~~~~y~~~~~~~r~~~~~rk~~~~~~~~~~~~~l~ 35 (171)
T PF12851_consen 1 SWSMYFNGCKFPRGSKKPRKFRLTPENPKLEENLQ 35 (171)
T ss_pred CeeEEeCCCCccccccccceeecccccccHHHHHH
Confidence 3999999988765 3333 34444433444333
No 7
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=34.94 E-value=18 Score=31.32 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=15.0
Q ss_pred EEEEcCceeeeeeeecCChhHHHH
Q 025738 157 IMYCNGRKVGFAVRRKASGQNRLM 180 (249)
Q Consensus 157 tmyCNGRKvGYAvRRe~t~~D~~V 180 (249)
-+++||+=+| |++|.|.+.|+++
T Consensus 88 ii~~nG~~~~-av~R~P~~gd~R~ 110 (173)
T PF02955_consen 88 IILFNGEPSH-AVRRIPAKGDFRS 110 (173)
T ss_dssp EEEETTEE-S-EEEEE--SS-S--
T ss_pred EEEECCEEhH-HeecCCCCCCcee
Confidence 4689999999 9999999888875
No 8
>PF08150 FerB: FerB (NUC096) domain; InterPro: IPR012561 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This is central domain B in proteins of the Ferlin family [].; GO: 0016021 integral to membrane
Probab=24.93 E-value=48 Score=25.95 Aligned_cols=19 Identities=26% Similarity=0.611 Sum_probs=15.7
Q ss_pred ceeeceEEEEEcCceeeeee
Q 025738 150 LRLVPVWIMYCNGRKVGFAV 169 (249)
Q Consensus 150 Ll~epvWtmyCNGRKvGYAv 169 (249)
|=|.-+| |.||+|++.||-
T Consensus 5 iPDV~IW-Ml~g~kRvAYaR 23 (76)
T PF08150_consen 5 IPDVFIW-MLSGNKRVAYAR 23 (76)
T ss_pred CCcEEEE-EEeCCeEEEEEE
Confidence 5567788 889999999993
No 9
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=23.25 E-value=47 Score=23.68 Aligned_cols=11 Identities=45% Similarity=0.766 Sum_probs=7.9
Q ss_pred ceeeeeCCCCC
Q 025738 226 ESFHLINPDEC 236 (249)
Q Consensus 226 EsfyMinPdG~ 236 (249)
-.||++||||+
T Consensus 93 ~~~~~~DPdG~ 103 (108)
T PF12681_consen 93 RSFYFIDPDGN 103 (108)
T ss_dssp EEEEEE-TTS-
T ss_pred EEEEEECCCCC
Confidence 47999999996
No 10
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=22.93 E-value=1.2e+02 Score=29.90 Aligned_cols=38 Identities=32% Similarity=0.599 Sum_probs=33.0
Q ss_pred ceeeEeeeceeeeecC---CcceeeeeCCCCC--------CCCeeEEEE
Q 025738 208 QIIYMRANYEHMIGSA---DSESFHLINPDEC--------AGQEFSLFL 245 (249)
Q Consensus 208 ElmYMRA~FERVVGSk---DSEsfyMinPdG~--------~GpELSIFf 245 (249)
=||-++|.||-+..+- +.|+-+++||||- .|.|+=+||
T Consensus 310 Pl~lIeAey~g~~i~tiLQNAETIkLv~~dG~pvSV~eLk~GD~vlv~~ 358 (376)
T COG1465 310 PLMLIEAEYEGVEISTILQNAETIKLVNPDGEPVSVAELKPGDEVLVYL 358 (376)
T ss_pred ceEEEEEEecCcEEEEEeccceeEEEEcCCCcEeeeEecCCCCEEEEEe
Confidence 3899999999887774 9999999999996 688888886
No 11
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=22.67 E-value=70 Score=26.94 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=13.3
Q ss_pred ceEEEEEcCceeeeee
Q 025738 154 PVWIMYCNGRKVGFAV 169 (249)
Q Consensus 154 pvWtmyCNGRKvGYAv 169 (249)
-...+|.||++||-.+
T Consensus 14 g~Y~l~vNG~~V~~~~ 29 (172)
T PF08531_consen 14 GRYELYVNGERVGDGP 29 (172)
T ss_dssp SEEEEEETTEEEEEE-
T ss_pred eeEEEEECCEEeeCCc
Confidence 3678999999999888
No 12
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=21.44 E-value=56 Score=29.88 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=23.4
Q ss_pred EEEcCceeeeeeeecCChhHHHHHHhccceeeccceecC
Q 025738 158 MYCNGRKVGFAVRRKASGQNRLMLKMMQSITIGAGVIPA 196 (249)
Q Consensus 158 myCNGRKvGYAvRRe~t~~D~~VL~~l~~VSmGAGVLP~ 196 (249)
+.-||+-+|||++|.+.+.||+. -++.|+-+-|.
T Consensus 211 ~vv~g~vv~~ai~R~~~~gd~r~-----N~~~Gg~~~~~ 244 (312)
T TIGR01380 211 LLIDGEPIGAAVARIPAGGEFRG-----NLAVGGRGEAT 244 (312)
T ss_pred EEECCeEEEEEEEecCCCCCccc-----cccCCceeecc
Confidence 45688889999999988777754 33455444443
Done!