Query 025739
Match_columns 249
No_of_seqs 221 out of 667
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 16:33:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025739.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025739hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 1.5E-14 5.2E-19 102.8 7.3 47 194-240 1-47 (55)
2 2wt7_A Proto-oncogene protein 99.2 2.7E-11 9.2E-16 87.8 7.5 47 193-239 1-47 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.1 1.6E-10 5.4E-15 82.9 7.3 46 194-239 1-46 (61)
4 2dgc_A Protein (GCN4); basic d 99.1 1.7E-10 6E-15 83.9 7.0 49 192-240 7-55 (63)
5 1jnm_A Proto-oncogene C-JUN; B 99.0 6E-10 2.1E-14 80.2 7.3 46 194-239 1-46 (62)
6 1ci6_A Transcription factor AT 98.6 5.6E-08 1.9E-12 70.4 6.2 46 194-239 2-47 (63)
7 1gd2_E Transcription factor PA 98.4 1.2E-06 4E-11 65.1 7.5 47 195-241 9-55 (70)
8 1gu4_A CAAT/enhancer binding p 98.3 1.2E-06 4E-11 66.4 7.3 50 190-239 11-60 (78)
9 3a5t_A Transcription factor MA 98.3 1.2E-07 4E-12 75.8 0.9 52 186-237 29-80 (107)
10 1hjb_A Ccaat/enhancer binding 98.3 1.8E-06 6E-11 66.6 7.3 51 189-239 10-60 (87)
11 2wt7_B Transcription factor MA 97.9 4.5E-05 1.5E-09 59.2 8.9 54 186-239 19-72 (90)
12 1skn_P DNA-binding domain of S 96.2 0.0024 8.2E-08 49.6 2.8 36 187-222 55-90 (92)
13 3s9g_A Protein hexim1; cyclin 93.0 0.46 1.6E-05 37.4 8.1 29 214-242 64-92 (104)
14 2c9l_Y EB1, zebra, BZLF1 trans 92.7 0.4 1.4E-05 34.2 6.7 40 198-237 5-44 (63)
15 2oqq_A Transcription factor HY 92.6 0.12 4E-06 34.8 3.5 24 214-237 2-25 (42)
16 2oxj_A Hybrid alpha/beta pepti 88.6 0.58 2E-05 30.1 3.9 30 216-245 2-32 (34)
17 2kz5_A Transcription factor NF 88.0 0.049 1.7E-06 42.2 -1.7 29 187-215 59-87 (91)
18 3m48_A General control protein 87.7 0.61 2.1E-05 29.9 3.5 29 216-244 1-30 (33)
19 1kd8_A GABH AIV, GCN4 acid bas 86.5 0.63 2.2E-05 30.3 3.2 30 216-245 2-32 (36)
20 1kd8_B GABH BLL, GCN4 acid bas 86.5 0.93 3.2E-05 29.5 4.0 30 216-245 2-32 (36)
21 3c3f_A Alpha/beta peptide with 84.7 1.2 4.2E-05 28.6 3.8 30 216-245 2-32 (34)
22 3c3g_A Alpha/beta peptide with 83.0 1.6 5.5E-05 27.9 3.8 30 216-245 1-31 (33)
23 1dip_A Delta-sleep-inducing pe 80.6 1.8 6.1E-05 32.5 4.0 24 214-237 21-44 (78)
24 1uo4_A General control protein 79.8 2.2 7.7E-05 27.4 3.7 29 216-244 2-31 (34)
25 2bni_A General control protein 79.1 2.3 7.8E-05 27.4 3.6 30 216-245 2-32 (34)
26 3he5_A Synzip1; heterodimeric 78.8 2.4 8.2E-05 28.6 3.8 23 216-238 4-26 (49)
27 2hy6_A General control protein 78.6 2.7 9.1E-05 27.0 3.8 30 216-245 2-32 (34)
28 1hlo_A Protein (transcription 77.8 1.5 5.1E-05 32.1 2.9 25 214-238 56-80 (80)
29 1nkp_B MAX protein, MYC proto- 77.5 4.3 0.00015 29.7 5.3 31 214-244 46-77 (83)
30 2wq1_A General control protein 77.4 3.1 0.00011 26.5 3.8 30 216-245 1-31 (33)
31 1am9_A Srebp-1A, protein (ster 75.7 4 0.00014 30.1 4.7 51 191-241 12-76 (82)
32 2oa5_A Hypothetical protein BQ 73.9 2.3 7.8E-05 33.9 3.1 23 215-237 8-30 (110)
33 1nlw_A MAD protein, MAX dimeri 72.1 7.3 0.00025 28.7 5.4 52 192-243 8-76 (80)
34 2oqq_A Transcription factor HY 67.3 11 0.00038 25.2 4.9 23 214-236 16-38 (42)
35 3nmd_A CGMP dependent protein 66.1 9.5 0.00033 28.2 4.8 34 211-244 36-70 (72)
36 2r2v_A GCN4 leucine zipper; co 62.9 11 0.00036 24.3 3.9 29 216-244 2-31 (34)
37 1zxa_A CGMP-dependent protein 58.9 17 0.00058 26.4 5.0 34 212-245 22-56 (67)
38 1fmh_A General control protein 58.8 17 0.00058 22.7 4.2 22 217-238 3-24 (33)
39 1dip_A Delta-sleep-inducing pe 57.0 11 0.00038 28.2 3.8 29 217-245 17-45 (78)
40 1zme_C Proline utilization tra 56.3 14 0.00049 25.1 4.1 24 214-237 43-66 (70)
41 2er8_A Regulatory protein Leu3 53.5 7.4 0.00025 26.9 2.3 23 214-236 48-70 (72)
42 1ci6_A Transcription factor AT 53.2 45 0.0015 23.3 6.4 25 215-239 30-54 (63)
43 2lz1_A Nuclear factor erythroi 53.1 0.26 8.9E-06 38.1 -5.8 27 188-214 60-86 (90)
44 3w03_C DNA repair protein XRCC 51.3 19 0.00065 30.8 4.9 23 215-237 152-174 (184)
45 1nkp_A C-MYC, MYC proto-oncoge 50.8 30 0.001 25.7 5.4 27 213-239 50-76 (88)
46 2wuj_A Septum site-determining 49.5 24 0.00081 24.3 4.3 26 214-239 26-51 (57)
47 3q4f_C DNA repair protein XRCC 48.0 16 0.00054 31.5 3.8 24 214-237 160-183 (186)
48 1p9i_A Cortexillin I/GCN4 hybr 47.5 17 0.00058 22.4 2.9 22 218-239 2-23 (31)
49 1deb_A APC protein, adenomatou 47.4 22 0.00076 24.8 3.8 21 218-238 6-26 (54)
50 2p22_D Hypothetical 12.0 kDa p 45.3 5.7 0.0002 29.9 0.6 11 49-59 1-11 (79)
51 1go4_E MAD1 (mitotic arrest de 44.8 32 0.0011 26.8 4.8 28 216-243 13-41 (100)
52 3oja_A Leucine-rich immune mol 43.9 87 0.003 28.8 8.5 37 207-243 427-464 (487)
53 3he4_B Synzip5; heterodimeric 43.3 54 0.0018 21.7 5.0 24 214-237 9-32 (46)
54 2dfs_A Myosin-5A; myosin-V, in 43.0 81 0.0028 33.2 9.0 27 215-241 1016-1043(1080)
55 1jnm_A Proto-oncogene C-JUN; B 42.9 79 0.0027 21.7 7.8 48 192-239 3-53 (62)
56 2yy0_A C-MYC-binding protein; 41.6 32 0.0011 23.6 4.0 22 216-237 27-48 (53)
57 2xv5_A Lamin-A/C; structural p 39.2 85 0.0029 22.8 6.2 30 208-237 5-34 (74)
58 1hjb_A Ccaat/enhancer binding 38.6 1.2E+02 0.0042 22.7 9.0 57 188-244 13-73 (87)
59 3coq_A Regulatory protein GAL4 37.9 13 0.00045 26.4 1.6 30 215-244 45-74 (89)
60 2aze_A Transcription factor DP 37.8 70 0.0024 26.7 6.2 26 211-236 22-50 (155)
61 2dgc_A Protein (GCN4); basic d 36.2 1.1E+02 0.0037 21.4 6.2 49 189-237 8-59 (63)
62 2k8f_B Cellular tumor antigen 36.1 12 0.00039 24.5 0.9 22 84-105 5-26 (39)
63 1gmj_A ATPase inhibitor; coile 33.1 1.6E+02 0.0053 22.2 8.8 40 198-237 32-73 (84)
64 1gu4_A CAAT/enhancer binding p 32.5 1.5E+02 0.005 21.8 8.8 57 188-244 13-73 (78)
65 1nkp_B MAX protein, MYC proto- 32.4 62 0.0021 23.3 4.5 26 214-239 53-78 (83)
66 3a2a_A Voltage-gated hydrogen 31.7 1.1E+02 0.0036 21.7 5.3 23 217-239 20-42 (58)
67 2g48_C Islet amyloid polypepti 29.8 28 0.00095 22.7 1.9 19 130-148 11-29 (37)
68 2jws_A GA88; evolution, foldin 29.1 17 0.00058 25.7 0.9 10 94-103 35-44 (56)
69 4ati_A MITF, microphthalmia-as 29.1 1.6E+02 0.0056 22.8 6.7 41 190-230 32-89 (118)
70 2jn6_A Protein CGL2762, transp 28.8 5.4 0.00019 28.9 -1.9 23 221-243 65-87 (97)
71 3he5_B Synzip2; heterodimeric 28.0 79 0.0027 21.4 4.0 17 220-236 29-45 (52)
72 1uii_A Geminin; human, DNA rep 27.6 67 0.0023 24.3 4.0 23 215-237 53-75 (83)
73 3oja_B Anopheles plasmodium-re 26.3 2.5E+02 0.0086 26.1 8.7 22 223-244 559-581 (597)
74 1t6f_A Geminin; coiled-coil, c 24.0 81 0.0028 20.4 3.3 14 222-235 21-34 (37)
75 1r4g_A RNA polymerase alpha su 23.3 63 0.0022 22.4 2.8 15 207-221 15-29 (53)
76 3a7p_A Autophagy protein 16; c 23.2 3E+02 0.01 22.8 7.5 17 218-234 113-129 (152)
77 1x66_A Friend leukemia integra 23.1 78 0.0027 24.0 3.7 57 85-142 16-77 (98)
78 2yy0_A C-MYC-binding protein; 22.7 1.4E+02 0.0046 20.4 4.5 19 219-237 23-41 (53)
79 1hwt_C Protein (heme activator 22.0 51 0.0017 22.9 2.3 22 213-234 56-77 (81)
80 1wlq_A Geminin; coiled-coil; 2 21.8 1.2E+02 0.0042 22.8 4.4 24 214-237 44-67 (83)
81 4ath_A MITF, microphthalmia-as 21.8 1.5E+02 0.0051 22.2 5.0 30 214-243 48-78 (83)
82 2l5g_A GPS2 protein, G protein 21.4 1.1E+02 0.0039 19.9 3.6 21 214-234 14-34 (38)
83 3ni0_A Bone marrow stromal ant 21.2 1.3E+02 0.0046 23.3 4.7 28 214-241 66-93 (99)
84 1uii_A Geminin; human, DNA rep 20.7 1.3E+02 0.0044 22.7 4.3 26 217-242 48-73 (83)
85 2v4h_A NF-kappa-B essential mo 20.0 90 0.0031 24.7 3.5 31 204-234 79-109 (110)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.53 E-value=1.5e-14 Score=102.85 Aligned_cols=47 Identities=40% Similarity=0.534 Sum_probs=44.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKEA 240 (249)
Q Consensus 194 rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~e~ 240 (249)
|+++|||+||+||++||.||++|+++||.+|..|+.||..|+.+.+.
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~ 47 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKA 47 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999663
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.22 E-value=2.7e-11 Score=87.76 Aligned_cols=47 Identities=30% Similarity=0.485 Sum_probs=44.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 193 ERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 193 err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
|||++|+.+||+||++||.||++|+.+|+.+|..|+.+|..|+.+..
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~ 47 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIA 47 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999998843
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.11 E-value=1.6e-10 Score=82.93 Aligned_cols=46 Identities=28% Similarity=0.381 Sum_probs=43.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 194 rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
||++|+.+||+||++||.||++|+.+||.+|..|+.+|..|+.+..
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~ 46 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVT 46 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999854
No 4
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.10 E-value=1.7e-10 Score=83.89 Aligned_cols=49 Identities=33% Similarity=0.389 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 192 IERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKEA 240 (249)
Q Consensus 192 ~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~e~ 240 (249)
.++..++..+||+||++||.||++|+.+||.+|..|+.+|..|..+.+.
T Consensus 7 ~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~ 55 (63)
T 2dgc_A 7 SDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVAR 55 (63)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566999999999999999999999999999999999999653
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.03 E-value=6e-10 Score=80.22 Aligned_cols=46 Identities=30% Similarity=0.431 Sum_probs=42.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 194 rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
|+.||..+||+||++||.||++|+.+||.+|..|+.+|..|..+..
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~ 46 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTAN 46 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999999999999999999999999999999854
No 6
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.62 E-value=5.6e-08 Score=70.42 Aligned_cols=46 Identities=28% Similarity=0.486 Sum_probs=38.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 194 RRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 194 rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
|+.+++.+||.||+|+|.||++++.+|+.++..|+.+|..|+.+.+
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~ 47 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERAD 47 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999999999999999999999999999998843
No 7
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.36 E-value=1.2e-06 Score=65.12 Aligned_cols=47 Identities=26% Similarity=0.276 Sum_probs=41.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025739 195 RLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKEAS 241 (249)
Q Consensus 195 r~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~e~~ 241 (249)
..||+..||.|++..|.||++|+.+||.+|..|+.+|..|..+++..
T Consensus 9 ~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~L 55 (70)
T 1gd2_E 9 SSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQL 55 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999998888888776643
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.35 E-value=1.2e-06 Score=66.35 Aligned_cols=50 Identities=28% Similarity=0.300 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 190 KSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 190 ~~~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
+.++.-..|..+|.++|++||.++++...+++.++..|+.||..|+.+.+
T Consensus 11 k~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~ 60 (78)
T 1gu4_A 11 KHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVE 60 (78)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555678999999999999999999999999999999999999855
No 9
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.30 E-value=1.2e-07 Score=75.79 Aligned_cols=52 Identities=31% Similarity=0.337 Sum_probs=41.4
Q ss_pred chhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 186 NAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 186 ~~~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e 237 (249)
...+...-|.+||.+|||.+|+.||.||.+.+.+||.++..|..+.+.|+.|
T Consensus 29 s~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~E 80 (107)
T 3a5t_A 29 SKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASE 80 (107)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTST
T ss_pred CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667789999999999999999999999999997666665555444444
No 10
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.29 E-value=1.8e-06 Score=66.61 Aligned_cols=51 Identities=27% Similarity=0.311 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 189 EKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 189 e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
++.+++-..|..+|.++|++||.++++...+++.++..|+.||..|+.+.+
T Consensus 10 dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~ 60 (87)
T 1hjb_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVE 60 (87)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666778999999999999999999999999999999999999854
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=97.94 E-value=4.5e-05 Score=59.15 Aligned_cols=54 Identities=24% Similarity=0.250 Sum_probs=45.6
Q ss_pred chhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 186 NAFEKSIERRLRRKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 186 ~~~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
+..+...-|..||-+|||..|+-||.||.....+||.++..|..+.+.|+.++.
T Consensus 19 s~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~ 72 (90)
T 2wt7_B 19 TKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVS 72 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556777888999999999999999999999999988888888777777753
No 12
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.22 E-value=0.0024 Score=49.58 Aligned_cols=36 Identities=25% Similarity=0.547 Sum_probs=29.7
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 025739 187 AFEKSIERRLRRKIKNRESAARSRARKQAYHNELVS 222 (249)
Q Consensus 187 ~~e~~~err~rR~ikNReSA~rSR~RKkay~~eLE~ 222 (249)
.......|..||..|||.+|+++|+||.+.+++|+.
T Consensus 55 ~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 55 EYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 444567888999999999999999999999888764
No 13
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=93.03 E-value=0.46 Score=37.45 Aligned_cols=29 Identities=38% Similarity=0.430 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025739 214 QAYHNELVSKVSRLEEENLKLKKEKEAST 242 (249)
Q Consensus 214 kay~~eLE~~v~~L~~EN~~L~~e~e~~~ 242 (249)
-+.+.+|+.+|.+|..||+.|+.++++-+
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 57889999999999999999999988643
No 14
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=92.73 E-value=0.4 Score=34.18 Aligned_cols=40 Identities=25% Similarity=0.273 Sum_probs=33.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 198 RKIKNRESAARSRARKQAYHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 198 R~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e 237 (249)
..-|||.+++++|+|=+..++-.-.-.+.-.+||.+|+.-
T Consensus 5 kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr~l 44 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRLL 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH
Confidence 3468999999999999988887777667777899998765
No 15
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=92.57 E-value=0.12 Score=34.85 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 214 QAYHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 214 kay~~eLE~~v~~L~~EN~~L~~e 237 (249)
|+|+.+||.++..|+..|.+|...
T Consensus 2 KaYl~eLE~r~k~le~~naeLEer 25 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEER 25 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Confidence 578888887777776666665443
No 16
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=88.57 E-value=0.58 Score=30.12 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-Hhhhhh
Q 025739 216 YHNELVSKVSRLEEENLKLKKEKE-ASTIFL 245 (249)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~e~e-~~~~~~ 245 (249)
+|..||.+|..|-.+|..|..+.+ |..+|+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 578999999999999999999955 666654
No 17
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=87.99 E-value=0.049 Score=42.19 Aligned_cols=29 Identities=31% Similarity=0.389 Sum_probs=23.9
Q ss_pred hhhhHHHHHHHHHHHhHHHHHHHHHHHHH
Q 025739 187 AFEKSIERRLRRKIKNRESAARSRARKQA 215 (249)
Q Consensus 187 ~~e~~~err~rR~ikNReSA~rSR~RKka 215 (249)
...-...|..||.-|||.+|+++|+||..
T Consensus 59 ~~Ql~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 59 ESQLALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34456678899999999999999999853
No 18
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=87.65 E-value=0.61 Score=29.89 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-Hhhhh
Q 025739 216 YHNELVSKVSRLEEENLKLKKEKE-ASTIF 244 (249)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~e~e-~~~~~ 244 (249)
+|..||.+|..|-.+|..|..|.+ |..+|
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 367899999999999999999954 55554
No 19
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=86.54 E-value=0.63 Score=30.29 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhhhh
Q 025739 216 YHNELVSKVSRLEEENLKLKKEK-EASTIFL 245 (249)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~e~-e~~~~~~ 245 (249)
+|..||.+|..|..+|..|..+. .|..++.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 46789999999999999999984 4766664
No 20
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=86.48 E-value=0.93 Score=29.50 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-Hhhhhh
Q 025739 216 YHNELVSKVSRLEEENLKLKKEKE-ASTIFL 245 (249)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~e~e-~~~~~~ 245 (249)
+|..||.+|..|-.+|..|..+.+ |..++.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 578999999999999999999944 666664
No 21
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=84.71 E-value=1.2 Score=28.60 Aligned_cols=30 Identities=7% Similarity=0.133 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-Hhhhhh
Q 025739 216 YHNELVSKVSRLEEENLKLKKEKE-ASTIFL 245 (249)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~e~e-~~~~~~ 245 (249)
+|..||.+|..|-.+|..|..|.+ |..+|.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 578999999999999999999944 666654
No 22
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=83.04 E-value=1.6 Score=27.90 Aligned_cols=30 Identities=3% Similarity=0.122 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-Hhhhhh
Q 025739 216 YHNELVSKVSRLEEENLKLKKEKE-ASTIFL 245 (249)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~e~e-~~~~~~ 245 (249)
+|..||.+|..|-.+|..|..|.+ |..+|.
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 367899999999999999999844 666654
No 23
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=80.59 E-value=1.8 Score=32.49 Aligned_cols=24 Identities=46% Similarity=0.422 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 214 QAYHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 214 kay~~eLE~~v~~L~~EN~~L~~e 237 (249)
|+.|.||+.++.+|+.||.-|+.-
T Consensus 21 Ke~I~EL~e~~~qLE~EN~~Lk~~ 44 (78)
T 1dip_A 21 KEQIRELVEKNSQLERENTLLKTL 44 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777888888888887777653
No 24
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=79.84 E-value=2.2 Score=27.40 Aligned_cols=29 Identities=7% Similarity=0.126 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-Hhhhh
Q 025739 216 YHNELVSKVSRLEEENLKLKKEKE-ASTIF 244 (249)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~e~e-~~~~~ 244 (249)
+|..||.+|..|-.+|..|..|.. |..+|
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 578899999999999999998844 55554
No 25
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=79.11 E-value=2.3 Score=27.36 Aligned_cols=30 Identities=7% Similarity=0.102 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-Hhhhhh
Q 025739 216 YHNELVSKVSRLEEENLKLKKEKE-ASTIFL 245 (249)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~e~e-~~~~~~ 245 (249)
+|..||.+|..|-.+|..|..|.+ |..+|.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 578999999999999999999844 665554
No 26
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=78.78 E-value=2.4 Score=28.63 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025739 216 YHNELVSKVSRLEEENLKLKKEK 238 (249)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~e~ 238 (249)
.+..||.+|+.|+.||+.|++.+
T Consensus 4 lvaqlenevaslenenetlkkkn 26 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKN 26 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhc
Confidence 35689999999999999999875
No 27
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=78.61 E-value=2.7 Score=27.04 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-Hhhhhh
Q 025739 216 YHNELVSKVSRLEEENLKLKKEKE-ASTIFL 245 (249)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~e~e-~~~~~~ 245 (249)
++..||.+|..|-.+|..|..+.+ |..+|.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 578899999999999999999844 666654
No 28
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=77.84 E-value=1.5 Score=32.08 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 214 QAYHNELVSKVSRLEEENLKLKKEK 238 (249)
Q Consensus 214 kay~~eLE~~v~~L~~EN~~L~~e~ 238 (249)
-.||..|+.++..|+.++..|+++|
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~~n 80 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKRQN 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5899999999999999999999874
No 29
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=77.50 E-value=4.3 Score=29.65 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhh
Q 025739 214 QAYHNELVSKVSRLEEENLKLKKEKE-ASTIF 244 (249)
Q Consensus 214 kay~~eLE~~v~~L~~EN~~L~~e~e-~~~~~ 244 (249)
-.||..|+.++..|+.+...|+.+++ |+.-|
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999998865 44444
No 30
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=77.37 E-value=3.1 Score=26.54 Aligned_cols=30 Identities=10% Similarity=0.049 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-Hhhhhh
Q 025739 216 YHNELVSKVSRLEEENLKLKKEKE-ASTIFL 245 (249)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~e~e-~~~~~~ 245 (249)
+|..||.+|..|-.+|..|..|.+ +..+|.
T Consensus 1 RMnQLEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 1 RMKQLEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 367899999999999999998854 555553
No 31
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=75.70 E-value=4 Score=30.10 Aligned_cols=51 Identities=25% Similarity=0.367 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025739 191 SIERRLRRKIKNRESAARSR--------------ARKQAYHNELVSKVSRLEEENLKLKKEKEAS 241 (249)
Q Consensus 191 ~~err~rR~ikNReSA~rSR--------------~RKkay~~eLE~~v~~L~~EN~~L~~e~e~~ 241 (249)
..||+.|-.|..+-.+=++- ..--.|+..|+.++..|+++|..|+.+.+-.
T Consensus 12 ~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 12 AIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666655543332 2235899999999999999999999986533
No 32
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=73.93 E-value=2.3 Score=33.92 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025739 215 AYHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~e 237 (249)
.-+++|++++.+|+-||..|+++
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkk 30 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQK 30 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999987
No 33
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=72.13 E-value=7.3 Score=28.75 Aligned_cols=52 Identities=10% Similarity=0.117 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhh
Q 025739 192 IERRLRRKIKNRESAARSR----------------ARKQAYHNELVSKVSRLEEENLKLKKEKE-ASTI 243 (249)
Q Consensus 192 ~err~rR~ikNReSA~rSR----------------~RKkay~~eLE~~v~~L~~EN~~L~~e~e-~~~~ 243 (249)
.||+.|.-|+++-.+=++- .+-.+||..|+.+...|..|++.|+++++ |..-
T Consensus 8 ~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 8 MEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666655444331 23468999999999999999999999965 4433
No 34
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=67.27 E-value=11 Score=25.19 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025739 214 QAYHNELVSKVSRLEEENLKLKK 236 (249)
Q Consensus 214 kay~~eLE~~v~~L~~EN~~L~~ 236 (249)
.....|||.+|+.|+.||.-|+.
T Consensus 16 e~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 16 ENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Confidence 34566788888888888877765
No 35
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=66.09 E-value=9.5 Score=28.21 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhh
Q 025739 211 ARKQAYHNELVSKVSRLEEENLKLKKEK-EASTIF 244 (249)
Q Consensus 211 ~RKkay~~eLE~~v~~L~~EN~~L~~e~-e~~~~~ 244 (249)
..|.+.+.+||.++...+.++..|+.+. .+..++
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3467889999999999999999999984 355544
No 36
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=62.92 E-value=11 Score=24.25 Aligned_cols=29 Identities=7% Similarity=0.148 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhhh
Q 025739 216 YHNELVSKVSRLEEENLKLKKEK-EASTIF 244 (249)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~e~-e~~~~~ 244 (249)
++..||.+|..|-.+|..|..|. .+..+|
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 47789999999999999998883 355554
No 37
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=58.95 E-value=17 Score=26.43 Aligned_cols=34 Identities=26% Similarity=0.352 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhh
Q 025739 212 RKQAYHNELVSKVSRLEEENLKLKKE-KEASTIFL 245 (249)
Q Consensus 212 RKkay~~eLE~~v~~L~~EN~~L~~e-~e~~~~~~ 245 (249)
.|.+.+.+||..+..-..|+.+|+.+ ..+..+|+
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 37899999999999999999999998 34655554
No 38
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=58.76 E-value=17 Score=22.68 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025739 217 HNELVSKVSRLEEENLKLKKEK 238 (249)
Q Consensus 217 ~~eLE~~v~~L~~EN~~L~~e~ 238 (249)
+..||.+|++.+.||-+|..+.
T Consensus 3 vaqlekevaqaeaenyqleqev 24 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEV 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHH
Confidence 4578999999999999888774
No 39
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=57.02 E-value=11 Score=28.16 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 025739 217 HNELVSKVSRLEEENLKLKKEKEASTIFL 245 (249)
Q Consensus 217 ~~eLE~~v~~L~~EN~~L~~e~e~~~~~~ 245 (249)
++.|..++..|++.|.+|..||.+.+-+.
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56889999999999999999999877653
No 40
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=56.27 E-value=14 Score=25.10 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 214 QAYHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 214 kay~~eLE~~v~~L~~EN~~L~~e 237 (249)
..|+..||.++..|+.+...|+..
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458899999999999988888764
No 41
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=53.45 E-value=7.4 Score=26.91 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025739 214 QAYHNELVSKVSRLEEENLKLKK 236 (249)
Q Consensus 214 kay~~eLE~~v~~L~~EN~~L~~ 236 (249)
..|+.+||.+|..|+.....|..
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~~ 70 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLTS 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 47899999999999987766543
No 42
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=53.24 E-value=45 Score=23.29 Aligned_cols=25 Identities=32% Similarity=0.251 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 215 AYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
..+.+|+.+...|+.+...|+.|+.
T Consensus 30 ~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 30 GECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666654
No 43
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=53.06 E-value=0.26 Score=38.07 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=21.6
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHHH
Q 025739 188 FEKSIERRLRRKIKNRESAARSRARKQ 214 (249)
Q Consensus 188 ~e~~~err~rR~ikNReSA~rSR~RKk 214 (249)
..-.--+-.||.-|||.+|+++|+||-
T Consensus 60 ~Ql~lIrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 60 AQLALIRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHHHHHHhhhhHHHHHHcchhhc
Confidence 334456778899999999999999874
No 44
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=51.29 E-value=19 Score=30.82 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025739 215 AYHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~e 237 (249)
..+.+|..++.+|+++|++|+++
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E 174 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRD 174 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678899999999999999988
No 45
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=50.80 E-value=30 Score=25.75 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 213 KQAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 213 Kkay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
-..||..|+.+...|..+...|+.+++
T Consensus 50 A~~YI~~L~~~~~~l~~~~~~L~~~n~ 76 (88)
T 1nkp_A 50 ATAYILSVQAEEQKLISEEDLLRKRRE 76 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999988887777777777654
No 46
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=49.47 E-value=24 Score=24.33 Aligned_cols=26 Identities=4% Similarity=0.116 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 214 QAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 214 kay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
-++++++...+..|..||..|+.+++
T Consensus 26 D~FLd~v~~~~~~l~~e~~~L~~~~~ 51 (57)
T 2wuj_A 26 NEFLAQVRKDYEIVLRKKTELEAKVN 51 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888889999999888854
No 47
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=48.00 E-value=16 Score=31.50 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 214 QAYHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 214 kay~~eLE~~v~~L~~EN~~L~~e 237 (249)
-..+.+|+.+..+|++||++|.++
T Consensus 160 L~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 160 LDTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346788999999999999999887
No 48
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=47.51 E-value=17 Score=22.42 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025739 218 NELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 218 ~eLE~~v~~L~~EN~~L~~e~e 239 (249)
+.|-.-++.|+.||.+|+.+.|
T Consensus 2 dqlnallasleaenkqlkakve 23 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVE 23 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677888888888887743
No 49
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=47.45 E-value=22 Score=24.77 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025739 218 NELVSKVSRLEEENLKLKKEK 238 (249)
Q Consensus 218 ~eLE~~v~~L~~EN~~L~~e~ 238 (249)
+.|-.+|+.|+.||.-|++|-
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL 26 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQEL 26 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHH
Confidence 567789999999999999884
No 50
>2p22_D Hypothetical 12.0 kDa protein in ADE3-Ser2 intergenic region; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=45.30 E-value=5.7 Score=29.92 Aligned_cols=11 Identities=45% Similarity=0.751 Sum_probs=10.3
Q ss_pred CChHHHhhhcC
Q 025739 49 MNLDELLKSVW 59 (249)
Q Consensus 49 MNmDElLknIw 59 (249)
||||++|++|-
T Consensus 1 ~~~e~~Lr~IP 11 (79)
T 2p22_D 1 MNVEELLRRIP 11 (79)
T ss_dssp CHHHHHHHHSC
T ss_pred CCHHHHHhcCc
Confidence 89999999985
No 51
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=44.75 E-value=32 Score=26.78 Aligned_cols=28 Identities=32% Similarity=0.338 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-Hhhh
Q 025739 216 YHNELVSKVSRLEEENLKLKKEKE-ASTI 243 (249)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~e~e-~~~~ 243 (249)
-+..|..++..|+.||.+|+++++ |+..
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888888888888888864 4433
No 52
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=43.94 E-value=87 Score=28.76 Aligned_cols=37 Identities=27% Similarity=0.233 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhh
Q 025739 207 ARSRARKQAYHNELVSKVSRLEEENLKLKKEK-EASTI 243 (249)
Q Consensus 207 ~rSR~RKkay~~eLE~~v~~L~~EN~~L~~e~-e~~~~ 243 (249)
+.-|.|.+++++..-.++.+|++||++|+++. ++...
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (487)
T 3oja_A 427 QSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLA 464 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhh
Confidence 33556677777888888888888888888883 34433
No 53
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=43.31 E-value=54 Score=21.74 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 214 QAYHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 214 kay~~eLE~~v~~L~~EN~~L~~e 237 (249)
|.|+++||.+-+.|+.-.+.|+-.
T Consensus 9 knyiqeleernaelknlkehlkfa 32 (46)
T 3he4_B 9 KNYIQELEERNAELKNLKEHLKFA 32 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHhHHHHHHHH
Confidence 679999998777776655555543
No 54
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=43.04 E-value=81 Score=33.18 Aligned_cols=27 Identities=44% Similarity=0.519 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHh
Q 025739 215 AYHNELVSKVSRLEEENLKLKKEK-EAS 241 (249)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~e~-e~~ 241 (249)
...++|+.+|+.|++||..|+.+. +++
T Consensus 1016 ~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1016 KYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888888999999888874 355
No 55
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=42.89 E-value=79 Score=21.70 Aligned_cols=48 Identities=21% Similarity=0.260 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 192 IERRLRRKIKNRESAARSRARK---QAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 192 ~err~rR~ikNReSA~rSR~RK---kay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
+.||.|=.+.=+.|-++-..+- ...+.+|+.+...|..+...|+.++.
T Consensus 3 errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 3 ERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443 45677888888888888888888865
No 56
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=41.64 E-value=32 Score=23.56 Aligned_cols=22 Identities=36% Similarity=0.345 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025739 216 YHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 216 y~~eLE~~v~~L~~EN~~L~~e 237 (249)
-..+|..++..|.+++++|+.+
T Consensus 27 E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 27 ELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666665
No 57
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=39.19 E-value=85 Score=22.82 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 208 RSRARKQAYHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 208 rSR~RKkay~~eLE~~v~~L~~EN~~L~~e 237 (249)
+-|...+..+..||.++.+++.+-+...++
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~E 34 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDE 34 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666667777766666655544333
No 58
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=38.62 E-value=1.2e+02 Score=22.68 Aligned_cols=57 Identities=26% Similarity=0.330 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhh
Q 025739 188 FEKSIERRLRRKIKNRESAARSRARK---QAYHNELVSKVSRLEEENLKLKKEKE-ASTIF 244 (249)
Q Consensus 188 ~e~~~err~rR~ikNReSA~rSR~RK---kay~~eLE~~v~~L~~EN~~L~~e~e-~~~~~ 244 (249)
.+.--+||.|=-+.=|.|-...|.|- +..+.+||.+-..|+.+.+.|..|.. |..+|
T Consensus 13 d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666665554444444444443 56788999999999999999999955 44444
No 59
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=37.86 E-value=13 Score=26.37 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 025739 215 AYHNELVSKVSRLEEENLKLKKEKEASTIF 244 (249)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~e~e~~~~~ 244 (249)
.|+..||.++..|+.....|.-...++.++
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~~~~~l~~~~ 74 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIFPREDLDMIL 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchhhHHhh
Confidence 478888999988888777775544444444
No 60
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=37.84 E-value=70 Score=26.66 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 025739 211 ARKQAYHNELVSKVSR---LEEENLKLKK 236 (249)
Q Consensus 211 ~RKkay~~eLE~~v~~---L~~EN~~L~~ 236 (249)
++|++|+.||..+... |-..|..+..
T Consensus 22 ~~K~~~LqeL~~Q~vafknLv~RN~~~e~ 50 (155)
T 2aze_A 22 KQKQSQLQELILQQIAFKNLVQRNRHAEQ 50 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5799999999987554 4455555543
No 61
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=36.25 E-value=1.1e+02 Score=21.39 Aligned_cols=49 Identities=35% Similarity=0.347 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 189 EKSIERRLRRKIKNRESAARSRARK---QAYHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 189 e~~~err~rR~ikNReSA~rSR~RK---kay~~eLE~~v~~L~~EN~~L~~e 237 (249)
++.+.||.|=.+.-|.|-+|-..+= ...+.+|+.+...|..+...|+.+
T Consensus 8 d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 8 DPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554555555555444444 456778899999999999999875
No 62
>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens}
Probab=36.07 E-value=12 Score=24.49 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=17.8
Q ss_pred cccccccccccCCchHhhhHHH
Q 025739 84 QASLTLARALSGKTVEQVWNEI 105 (249)
Q Consensus 84 QgS~tlp~~ls~KTVDEVWrdI 105 (249)
|..+++-++||+.|..+.|+-+
T Consensus 5 qsd~siepPLSQETFsdLW~LL 26 (39)
T 2k8f_B 5 QSDPSVEPPLSQETFSDLWKLL 26 (39)
T ss_dssp CCCSSCCCCCSCHHHHHHHHTC
T ss_pred ccccccCCCccHHHHHHHHHhC
Confidence 3446777889999999999955
No 63
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=33.11 E-value=1.6e+02 Score=22.25 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=20.5
Q ss_pred HHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 025739 198 RKIKNRESAARSRARKQ--AYHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 198 R~ikNReSA~rSR~RKk--ay~~eLE~~v~~L~~EN~~L~~e 237 (249)
+-++.++.++..-.|++ ..+..-..++..|+++..++++.
T Consensus 32 ~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~ 73 (84)
T 1gmj_A 32 RYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQS 73 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554 33333344556666665555444
No 64
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=32.45 E-value=1.5e+02 Score=21.77 Aligned_cols=57 Identities=26% Similarity=0.330 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhh
Q 025739 188 FEKSIERRLRRKIKNRESAARSRARK---QAYHNELVSKVSRLEEENLKLKKEKE-ASTIF 244 (249)
Q Consensus 188 ~e~~~err~rR~ikNReSA~rSR~RK---kay~~eLE~~v~~L~~EN~~L~~e~e-~~~~~ 244 (249)
.+.--+||.|==+.=|-|-...|.|- +..+.+|+.+-..|+.+...|..|.. |..+|
T Consensus 13 d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666665444444444444443 56788999999999999999999966 44443
No 65
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=32.36 E-value=62 Score=23.27 Aligned_cols=26 Identities=12% Similarity=0.215 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 214 QAYHNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 214 kay~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
+.....|+.++..|+.+|..|+.+..
T Consensus 53 ~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 53 RRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455678888889999998887743
No 66
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=31.70 E-value=1.1e+02 Score=21.68 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025739 217 HNELVSKVSRLEEENLKLKKEKE 239 (249)
Q Consensus 217 ~~eLE~~v~~L~~EN~~L~~e~e 239 (249)
-..|-.+|.+|+..+.+...|++
T Consensus 20 n~~L~~kv~~Le~~c~e~eQEie 42 (58)
T 3a2a_A 20 NVQLAAKIQHLEFSCSEKEQEIE 42 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777776666655544
No 67
>2g48_C Islet amyloid polypeptide; protein-peptide complex, hydrolase; 2.60A {Homo sapiens} PDB: 2kb8_A 3hgz_D 2l86_A 2kj7_A
Probab=29.83 E-value=28 Score=22.66 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=14.2
Q ss_pred hhhHHHhhhhccccccCCC
Q 025739 130 TLEDFLVQAGLFAEASVSP 148 (249)
Q Consensus 130 TLEDFLvrAGvv~e~~~~p 148 (249)
.|.+||.|+|.+-...-.|
T Consensus 11 rla~~LsrSg~~~~~nf~P 29 (37)
T 2g48_C 11 RLANFLVHSSNNFGAILSS 29 (37)
T ss_pred HHHHHHHhhccccccccCC
Confidence 5899999999876554344
No 68
>2jws_A GA88; evolution, folding, protein design, protein structure, de novo protein; NMR {Artificial gene} PDB: 2kdl_A 2lhg_A 2lhc_A 2lhd_A 2lhe_A 2kdm_A 2jwu_A
Probab=29.14 E-value=17 Score=25.70 Aligned_cols=10 Identities=60% Similarity=1.039 Sum_probs=8.9
Q ss_pred cCCchHhhhH
Q 025739 94 SGKTVEQVWN 103 (249)
Q Consensus 94 s~KTVDEVWr 103 (249)
..||||+||-
T Consensus 35 nakTVeGV~a 44 (56)
T 2jws_A 35 NAKTVEGVWT 44 (56)
T ss_dssp TCSCHHHHHH
T ss_pred cccccccccc
Confidence 5899999996
No 69
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=29.09 E-value=1.6e+02 Score=22.79 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHH
Q 025739 190 KSIERRLRRKIKNRESAARSR-----------------ARKQAYHNELVSKVSRLEEE 230 (249)
Q Consensus 190 ~~~err~rR~ikNReSA~rSR-----------------~RKkay~~eLE~~v~~L~~E 230 (249)
...||+.|-.|..+-.+-++- .+--.|+..|..++..|+++
T Consensus 32 n~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~ 89 (118)
T 4ati_A 32 NLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 89 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777888776664431 11247888898877777654
No 70
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=28.80 E-value=5.4 Score=28.88 Aligned_cols=23 Identities=13% Similarity=0.231 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 025739 221 VSKVSRLEEENLKLKKEKEASTI 243 (249)
Q Consensus 221 E~~v~~L~~EN~~L~~e~e~~~~ 243 (249)
+.++..|+.||.+|+.++++.+.
T Consensus 65 ~~ei~~L~~e~~~L~~e~~~Lkk 87 (97)
T 2jn6_A 65 AEQIRQLKKENALQRARTRHPAE 87 (97)
T ss_dssp HHHHHHHHHCGGGGGGTTSCCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777665443
No 71
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=28.03 E-value=79 Score=21.40 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025739 220 LVSKVSRLEEENLKLKK 236 (249)
Q Consensus 220 LE~~v~~L~~EN~~L~~ 236 (249)
||.-++.|+.|..+|..
T Consensus 29 lekiianlrdeiarlen 45 (52)
T 3he5_B 29 LEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444445544444433
No 72
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=27.60 E-value=67 Score=24.27 Aligned_cols=23 Identities=22% Similarity=0.279 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025739 215 AYHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 215 ay~~eLE~~v~~L~~EN~~L~~e 237 (249)
..+..|+.+++.|+++|.+|+.-
T Consensus 53 ~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 53 KEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666543
No 73
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.33 E-value=2.5e+02 Score=26.10 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHH-HHHhhhh
Q 025739 223 KVSRLEEENLKLKKE-KEASTIF 244 (249)
Q Consensus 223 ~v~~L~~EN~~L~~e-~e~~~~~ 244 (249)
++..|++|+..++.+ ++++..+
T Consensus 559 ~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 559 KQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555 4444444
No 74
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=23.99 E-value=81 Score=20.43 Aligned_cols=14 Identities=36% Similarity=0.655 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHH
Q 025739 222 SKVSRLEEENLKLK 235 (249)
Q Consensus 222 ~~v~~L~~EN~~L~ 235 (249)
.+++.|++||.+|.
T Consensus 21 eeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 21 NEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHH
Confidence 45677777777664
No 75
>1r4g_A RNA polymerase alpha subunit; three helix-bundle, viral protein, transferase; NMR {Sendai virus} SCOP: a.8.5.1
Probab=23.27 E-value=63 Score=22.36 Aligned_cols=15 Identities=47% Similarity=0.512 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHH
Q 025739 207 ARSRARKQAYHNELV 221 (249)
Q Consensus 207 ~rSR~RKkay~~eLE 221 (249)
..||.-||+|+.+|-
T Consensus 15 ~LS~~~K~sYi~~L~ 29 (53)
T 1r4g_A 15 PLSRAEKAAYVKSLS 29 (53)
T ss_dssp CCCSHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHH
Confidence 457888999999997
No 76
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=23.23 E-value=3e+02 Score=22.78 Aligned_cols=17 Identities=41% Similarity=0.513 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025739 218 NELVSKVSRLEEENLKL 234 (249)
Q Consensus 218 ~eLE~~v~~L~~EN~~L 234 (249)
..+|.++..|++||..|
T Consensus 113 n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 113 NVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555566666443
No 77
>1x66_A Friend leukemia integration 1 transcription factor; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.06 E-value=78 Score=24.03 Aligned_cols=57 Identities=19% Similarity=0.126 Sum_probs=33.8
Q ss_pred ccccccccccCCchHhhhHHHHhccccccCcccccCCCC-----CCccchhhhHHHhhhhccc
Q 025739 85 ASLTLARALSGKTVEQVWNEIQQGQKKRYGQEMKSHQRE-----PTLGELTLEDFLVQAGLFA 142 (249)
Q Consensus 85 gS~tlp~~ls~KTVDEVWrdI~~~~~~~~~~~~~~~~rq-----~tlgeMTLEDFLvrAGvv~ 142 (249)
.-+-+|.....=|.+.|+.=|.-......-.... ..+- ..|=.||.|||+.+++.+.
T Consensus 16 ~rl~ip~DP~~Ws~~~V~~WL~W~~~ef~L~~v~-~~~F~~m~G~~LC~ls~edF~~~~~~~~ 77 (98)
T 1x66_A 16 RRVIVPADPTLWTQEHVRQWLEWAIKEYSLMEID-TSFFQNMDGKELCKMNKEDFLRATTLYN 77 (98)
T ss_dssp SCCCCCSSGGGCCTTHHHHHHHHHHHHTTCCSCC-GGGGTTCCHHHHHHCCHHHHHTTSCHHH
T ss_pred eecCCCCChhhcCHHHHHHHHHHHHHhcCCCCCC-hhhCCCCCHHHHHcCCHHHHHHHcCCCc
Confidence 3456777777888899988776443222111111 1121 2344599999999987543
No 78
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=22.71 E-value=1.4e+02 Score=20.37 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025739 219 ELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 219 eLE~~v~~L~~EN~~L~~e 237 (249)
.|-.++..|+.++..|..+
T Consensus 23 aLk~E~~eLk~k~~~L~~~ 41 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEE 41 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555
No 79
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=22.02 E-value=51 Score=22.87 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025739 213 KQAYHNELVSKVSRLEEENLKL 234 (249)
Q Consensus 213 Kkay~~eLE~~v~~L~~EN~~L 234 (249)
+..|+..|+.+|..||.....|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999998765554
No 80
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=21.83 E-value=1.2e+02 Score=22.84 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 214 QAYHNELVSKVSRLEEENLKLKKE 237 (249)
Q Consensus 214 kay~~eLE~~v~~L~~EN~~L~~e 237 (249)
...++.++.+++.|+++|..|+.-
T Consensus 44 h~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 44 HKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445777788888888888888765
No 81
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=21.78 E-value=1.5e+02 Score=22.21 Aligned_cols=30 Identities=23% Similarity=0.251 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhhh
Q 025739 214 QAYHNELVSKVSRLEEENLKLKKE-KEASTI 243 (249)
Q Consensus 214 kay~~eLE~~v~~L~~EN~~L~~e-~e~~~~ 243 (249)
.+.+.+.|.+...|+..|..|... +|||..
T Consensus 48 ~~r~~e~e~r~k~le~~n~~l~~riqELE~q 78 (83)
T 4ath_A 48 QQRAKDLENRQKKLEHANRHLLLRVQELEMQ 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 455667788888888888887766 667654
No 82
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.38 E-value=1.1e+02 Score=19.85 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025739 214 QAYHNELVSKVSRLEEENLKL 234 (249)
Q Consensus 214 kay~~eLE~~v~~L~~EN~~L 234 (249)
++.+..|+.++..|++|-..|
T Consensus 14 keQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555554443
No 83
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=21.20 E-value=1.3e+02 Score=23.26 Aligned_cols=28 Identities=39% Similarity=0.458 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025739 214 QAYHNELVSKVSRLEEENLKLKKEKEAS 241 (249)
Q Consensus 214 kay~~eLE~~v~~L~~EN~~L~~e~e~~ 241 (249)
++.+.+|+-++..|..+.+.+..++|+.
T Consensus 66 q~~v~elqgEI~~Lnq~Lqda~~~~~~~ 93 (99)
T 3ni0_A 66 QARIKELENEVTKLNQELENLRIQKETS 93 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3557788888887777777666666643
No 84
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=20.66 E-value=1.3e+02 Score=22.71 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025739 217 HNELVSKVSRLEEENLKLKKEKEAST 242 (249)
Q Consensus 217 ~~eLE~~v~~L~~EN~~L~~e~e~~~ 242 (249)
-..|..+|..|++|+..|+.+++-.+
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677889999999999999976444
No 85
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=20.03 E-value=90 Score=24.69 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025739 204 ESAARSRARKQAYHNELVSKVSRLEEENLKL 234 (249)
Q Consensus 204 eSA~rSR~RKkay~~eLE~~v~~L~~EN~~L 234 (249)
++-+..|.|=....++|+.+++.|..+|.+|
T Consensus 79 ~aERadREkl~~eKe~L~~ql~~Lq~q~~~l 109 (110)
T 2v4h_A 79 QAERHAREKLVEKKEYLQEQLEQLQREFNKL 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchhhHHHHHhHHHHHHHHHHHHHHHHHhc
Done!