BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025742
         (248 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P0CB19|Y3081_ARATH Uncharacterized protein At3g50808 OS=Arabidopsis thaliana
           GN=At3g50808 PE=4 SV=1
          Length = 110

 Score = 38.5 bits (88), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 87  IQKFIDISCVQTYIINSAKIVFLNER---PQPRPGKGVTNTCEICCRSL--LDSFRFCSL 141
           + +++DIS +  Y IN   IV++N+R      R    V + C+IC   +    S  FCS+
Sbjct: 1   MSQYMDISGIHLYSINGFPIVYINQRRGNNNHRSRSNVMHKCKICEWEIDAASSALFCSM 60

Query: 142 GCKLGAMKRGDLD 154
            CK  ++    LD
Sbjct: 61  ECKFRSVLGSQLD 73


>sp|Q8K3G5|VRK3_MOUSE Inactive serine/threonine-protein kinase VRK3 OS=Mus musculus
           GN=Vrk3 PE=1 SV=2
          Length = 453

 Score = 32.7 bits (73), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 7/106 (6%)

Query: 125 CEICCRSLLDSFRFCSL-GCKLGAMKRGDLDLTFTLRVKHKDGFHGGSESDESSTPKKIR 183
           C +C +S+  SF+FC   G  L   + G      T  V    G      S   ++PKK++
Sbjct: 5   CPVCGKSVKVSFKFCPYCGKALPVEEDGGTQSAVTPHVSSVPGSRRDLNSSFETSPKKVK 64

Query: 184 RTPNFNRLMEGLTIYRHSHHNTNEGAERSCSSGDEAT-TKLSPATP 228
                +  +  L + RHS  +++ G++ + +S D AT T+  P TP
Sbjct: 65  ----CSHTVTSLPLSRHSDCDSS-GSDNTLTSPDRATGTRSRPLTP 105


>sp|Q5JQC9|AKAP4_HUMAN A-kinase anchor protein 4 OS=Homo sapiens GN=AKAP4 PE=2 SV=1
          Length = 854

 Score = 30.8 bits (68), Expect = 9.1,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 191 LMEGLTIYRHSHHNTNEGAERSCSSGDEATTKLSPAT 227
           L EGLTI+     N+ + A ++CS+ DE   K++ +T
Sbjct: 501 LKEGLTIWNQKQGNSCKVATKACSNKDEKGEKINAST 537


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.137    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,568,307
Number of Sequences: 539616
Number of extensions: 4004801
Number of successful extensions: 7547
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 7544
Number of HSP's gapped (non-prelim): 7
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)