Query 025742
Match_columns 248
No_of_seqs 145 out of 187
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 16:37:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025742.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025742hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d8u_A Ubiquitin ligase TRIM63 95.2 0.0091 3.1E-07 41.4 2.3 37 33-73 10-48 (64)
2 2yvr_A Transcription intermedi 95.1 0.0088 3E-07 39.8 1.8 37 33-73 8-45 (50)
3 3ddt_A E3 ubiquitin-protein li 95.1 0.012 4.1E-07 39.0 2.5 39 31-73 6-46 (48)
4 1fre_A Nuclear factor XNF7; zi 94.0 0.031 1.1E-06 35.8 2.5 35 33-72 5-41 (42)
5 2did_A Tripartite motif protei 93.8 0.033 1.1E-06 37.5 2.4 36 33-73 10-47 (53)
6 2yrg_A Tripartite motif-contai 92.4 0.068 2.3E-06 37.1 2.4 36 33-73 16-53 (59)
7 2csv_A Tripartite motif protei 92.1 0.06 2.1E-06 38.3 1.8 36 33-73 20-56 (72)
8 2dja_A Midline-2; tripartite m 91.8 0.057 1.9E-06 39.2 1.4 37 33-73 20-58 (84)
9 2egm_A Tripartite motif-contai 90.2 0.044 1.5E-06 37.9 -0.5 35 33-72 20-56 (57)
10 2jun_A Midline-1; B-BOX, TRIM, 90.0 0.1 3.5E-06 38.7 1.4 38 32-73 60-99 (101)
11 2w0t_A Lethal(3)malignant brai 84.6 0.17 6E-06 34.4 -0.1 25 120-144 4-34 (43)
12 2das_A Zinc finger MYM-type pr 81.5 0.79 2.7E-05 33.4 2.3 31 115-145 13-53 (62)
13 2l8e_A Polyhomeotic-like prote 65.6 0.78 2.7E-05 31.7 -1.1 24 122-145 18-46 (49)
14 1lv3_A Hypothetical protein YA 62.4 1.8 6E-05 32.0 0.2 29 122-150 9-42 (68)
15 3ny3_A E3 ubiquitin-protein li 46.9 10 0.00034 28.0 2.1 30 41-70 12-46 (75)
16 3nis_A E3 ubiquitin-protein li 43.9 12 0.00041 28.1 2.2 30 41-70 16-50 (82)
17 2hiy_A Hypothetical protein; C 43.4 8 0.00027 32.4 1.3 33 79-112 19-54 (183)
18 2jun_A Midline-1; B-BOX, TRIM, 41.1 11 0.00039 27.4 1.7 26 42-68 14-40 (101)
19 1tot_A CREB-binding protein; z 31.7 22 0.00074 24.2 1.8 27 47-74 20-48 (52)
20 2fc7_A ZZZ3 protein; structure 25.7 33 0.0011 25.4 1.9 30 47-76 37-76 (82)
21 2yqq_A Zinc finger HIT domain- 24.6 26 0.0009 24.6 1.2 23 122-145 12-40 (56)
22 2dip_A Zinc finger SWIM domain 21.9 19 0.00064 27.7 -0.0 29 47-75 47-77 (98)
23 2ffw_A Midline-1; B-BOX, ring 21.2 38 0.0013 24.3 1.5 24 43-67 42-66 (78)
24 2yqp_A Probable ATP-dependent 20.5 43 0.0015 24.1 1.6 28 122-149 19-51 (60)
25 3sub_A ADP-ribosylation factor 20.1 17 0.00057 30.8 -0.7 46 44-90 20-78 (163)
No 1
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=95.22 E-value=0.0091 Score=41.38 Aligned_cols=37 Identities=35% Similarity=0.758 Sum_probs=29.4
Q ss_pred CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeEE
Q 025742 33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQI 73 (248)
Q Consensus 33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI 73 (248)
.|..|.. ...++||.+|.. .+|..|.. .|++|+++-|
T Consensus 10 ~C~~H~~---e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l 48 (64)
T 2d8u_A 10 MCKEHED---EKINIYCLTCEV-PTCSMCKVFGIHKACEVAPL 48 (64)
T ss_dssp CCSSCTT---CCCCSEESSSCC-CCCSHHHHSSSTTSSCEECT
T ss_pred cCcCcCC---CccceEcCcCCc-eeCccccCCCcCCCCCeeCH
Confidence 5999954 247899999997 89999963 7999876654
No 2
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=95.07 E-value=0.0088 Score=39.82 Aligned_cols=37 Identities=32% Similarity=0.665 Sum_probs=29.1
Q ss_pred CCccCCCCCCCCcceecccCCCccCCcchhc-CCCCCceeEE
Q 025742 33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI-NHKDHRVVQI 73 (248)
Q Consensus 33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQI 73 (248)
.|..|.. ...++||.+|.. .+|..|.. .|++|+++-|
T Consensus 8 ~C~~H~~---e~l~lfC~~~~~-~iC~~C~~~~H~~H~~~~l 45 (50)
T 2yvr_A 8 YCNVHKH---EPLVLFCESCDT-LTCRDCQLNAHKDHQYQFL 45 (50)
T ss_dssp BCSSSTT---CBCCEEETTTTE-EECHHHHHTTTTTCCEEET
T ss_pred cCcCCCC---CCEEEEeCCCCE-EEecccCCCcCCCCceecH
Confidence 5999954 247899999987 89999964 7889877654
No 3
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=95.07 E-value=0.012 Score=38.98 Aligned_cols=39 Identities=33% Similarity=0.679 Sum_probs=30.5
Q ss_pred CCCCccCCCCCCCCcceecccCCCccCCcchh-c-CCCCCceeEE
Q 025742 31 FIPCVVHGDSNKSECNMFCLDCMGNAFCSYCL-I-NHKDHRVVQI 73 (248)
Q Consensus 31 F~~C~~H~~~~knE~N~FCldC~~~~~C~~Cl-~-~H~~HrvlQI 73 (248)
...|..|.. -..++||.+|.. .+|..|. . .|++|+++.|
T Consensus 6 ~~~C~~H~~---e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l 46 (48)
T 3ddt_A 6 HPMCKEHED---EKINIYCLTCEV-PTCSMCKVFGIHKACEVAPL 46 (48)
T ss_dssp SCBCSSSTT---SBCCEEETTTTE-EECHHHHHHSTTTTSCEEEC
T ss_pred CCcCCCCCC---ccccEEcCCCCe-eEcccccCCCcCCCCcEEeC
Confidence 346999963 236799999987 8999996 3 7999988764
No 4
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=94.02 E-value=0.031 Score=35.76 Aligned_cols=35 Identities=23% Similarity=0.519 Sum_probs=28.3
Q ss_pred CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeE
Q 025742 33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQ 72 (248)
Q Consensus 33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQ 72 (248)
.|..|. ....+||.+|.. .+|..|.. .|++|+++.
T Consensus 5 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~ 41 (42)
T 1fre_A 5 KCSEHD----ERLKLYCKDDGT-LSCVICRDSLKHASHNFLP 41 (42)
T ss_dssp CCCSSC----SSCCCCCCSSSS-SSCCTTSSCSSCTTCCCCC
T ss_pred cchhhC----CeeeEEeCCCCe-EEeccCCCCCCCCCCcEec
Confidence 589895 247799999987 89999964 799998753
No 5
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=93.83 E-value=0.033 Score=37.48 Aligned_cols=36 Identities=33% Similarity=0.729 Sum_probs=29.4
Q ss_pred CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeEE
Q 025742 33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQI 73 (248)
Q Consensus 33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI 73 (248)
.|..|. ....+||.+|.. .+|..|.. .|++|+++-|
T Consensus 10 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l 47 (53)
T 2did_A 10 LCPQHH----EALSLFCYEDQE-AVCLICAISHTHRAHTVVPL 47 (53)
T ss_dssp BCTTTC----CBCCEEESSSCS-EECHHHHTSSTTTTSCEEEC
T ss_pred cChhhC----CeeeEEeCCCCe-EEeccccCCCCCCCCcEeeH
Confidence 599995 247799999987 89999964 7999987655
No 6
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.45 E-value=0.068 Score=37.10 Aligned_cols=36 Identities=25% Similarity=0.614 Sum_probs=29.7
Q ss_pred CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeEE
Q 025742 33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQI 73 (248)
Q Consensus 33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI 73 (248)
.|..|.. ...+||.+|.. .+|..|.. .|++|+++.|
T Consensus 16 ~C~~H~e----~L~lfC~~d~~-~iC~~C~~s~eH~~H~~~~l 53 (59)
T 2yrg_A 16 HCARHGE----KLLLFCQEDGK-VICWLCERSQEHRGHHTFPT 53 (59)
T ss_dssp BCTTTCC----BCCEEETTTCS-EECHHHHTSTTTTTCCEEEC
T ss_pred cChhhCc----eeeeecCCCCc-EEecccCCCCcCCCCcEeeH
Confidence 5999963 47799999987 89999964 7999988765
No 7
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=92.11 E-value=0.06 Score=38.32 Aligned_cols=36 Identities=33% Similarity=0.838 Sum_probs=28.8
Q ss_pred CCccCCCCCCCCcceecccCCCccCCcchhc-CCCCCceeEE
Q 025742 33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI-NHKDHRVVQI 73 (248)
Q Consensus 33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQI 73 (248)
.|..|. ....+||.+|.. .+|..|.. .|++|+++-|
T Consensus 20 ~C~~H~----e~l~lfC~~d~~-~iC~~C~~~~H~~H~~~~l 56 (72)
T 2csv_A 20 KCPVHG----KTMELFCQTDQT-CICYLCMFQEHKNHSTVTV 56 (72)
T ss_dssp BCTTTC----CBCCEEESSSCC-EECHHHHHTTTSSSCEEEH
T ss_pred cCcccC----CceEEEeCCCCe-EEccccCCCCCCCCCEecH
Confidence 699994 347799999987 89999965 7888876654
No 8
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=91.75 E-value=0.057 Score=39.21 Aligned_cols=37 Identities=30% Similarity=0.823 Sum_probs=29.6
Q ss_pred CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeEE
Q 025742 33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQI 73 (248)
Q Consensus 33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI 73 (248)
.|..|.. -..++||.+|.. .+|..|.. .|++|+++-|
T Consensus 20 ~C~~H~~---e~l~lfC~~d~~-~iC~~C~~~~~H~~H~~~~l 58 (84)
T 2dja_A 20 TCLDHEN---EKVNMYCVSDDQ-LICALCKLVGRHRDHQVASL 58 (84)
T ss_dssp CCSSCSS---SCCCEEETTTTE-EECHHHHHTSTTTTCCBCCC
T ss_pred cCcCcCC---ccccEEcCCCCc-eEcccCcCCCCCCCCCccCH
Confidence 5999953 237899999987 89999964 7999987665
No 9
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.19 E-value=0.044 Score=37.92 Aligned_cols=35 Identities=34% Similarity=0.594 Sum_probs=28.5
Q ss_pred CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeE
Q 025742 33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQ 72 (248)
Q Consensus 33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQ 72 (248)
.|..|. ....+||.+|.. .+|..|.. .|++|+++.
T Consensus 20 ~C~~H~----e~L~lfC~~d~~-~iC~~C~~~~eH~~H~~~~ 56 (57)
T 2egm_A 20 ICPKHQ----EALKLFCEVDEE-AICVVCRESRSHKQHSVVP 56 (57)
T ss_dssp BCTTTC----CBCCEEETTTTE-EECHHHHHSHHHHSSCEEC
T ss_pred cChhhC----ceeeEEcCCCCc-EEecccCCCCCCCCCcEec
Confidence 499994 247799999987 89999964 799998764
No 10
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=90.01 E-value=0.1 Score=38.72 Aligned_cols=38 Identities=32% Similarity=0.763 Sum_probs=29.7
Q ss_pred CCCccCCCCCCCCcceecccCCCccCCcchh--cCCCCCceeEE
Q 025742 32 IPCVVHGDSNKSECNMFCLDCMGNAFCSYCL--INHKDHRVVQI 73 (248)
Q Consensus 32 ~~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~HrvlQI 73 (248)
..|..|.. ...++||.+|.. .+|..|. ..|++|+++-|
T Consensus 60 ~~C~~H~~---e~l~~fC~~~~~-~iC~~C~~~~~H~~H~~~~l 99 (101)
T 2jun_A 60 LMCLEHED---EKVNMYCVTDDQ-LICALCKLVGRHRDHQVAAL 99 (101)
T ss_dssp CCCSSCSS---SCCCEEETTTTE-EECHHHHHHTTTSSSCBCCC
T ss_pred CcCcCcCC---CcceEECCCCCC-ccchhcCCCCCcCCCCeecC
Confidence 36999953 237899999987 8999996 47999987543
No 11
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=84.65 E-value=0.17 Score=34.44 Aligned_cols=25 Identities=32% Similarity=0.781 Sum_probs=18.4
Q ss_pred CCCCcccccccc-cCC-----CCeeeeeccc
Q 025742 120 GVTNTCEICCRS-LLD-----SFRFCSLGCK 144 (248)
Q Consensus 120 g~~~~Ce~C~R~-L~D-----~~rFCSL~CK 144 (248)
+....||.|++. +.. +-||||++|-
T Consensus 4 ~~~~~CE~CG~~g~~~~F~~ksKRFCS~~Ca 34 (43)
T 2w0t_A 4 SEPAVCEMCGIVGTREAFFSKTKRFCSVSCS 34 (43)
T ss_dssp CCEEECTTTCCEEETTTSCTTTSSSSSHHHH
T ss_pred CceehhhhhcCcchhhhhccCCcceechhhh
Confidence 345689999984 333 4599999994
No 12
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=81.55 E-value=0.79 Score=33.40 Aligned_cols=31 Identities=29% Similarity=0.508 Sum_probs=25.0
Q ss_pred CCCCCCCCCcccccccccCC----------CCeeeeecccc
Q 025742 115 PRPGKGVTNTCEICCRSLLD----------SFRFCSLGCKL 145 (248)
Q Consensus 115 ~r~~kg~~~~Ce~C~R~L~D----------~~rFCSL~CKv 145 (248)
.++.+...-+|+.|.+.|+. +-.|||..|-.
T Consensus 13 q~~~~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~ 53 (62)
T 2das_A 13 QQLTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLS 53 (62)
T ss_dssp CCCSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHH
T ss_pred cCCCCccccChhhccchhhcCceeeeecCchhheechHHHc
Confidence 45667778899999999984 35899999953
No 13
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=65.60 E-value=0.78 Score=31.70 Aligned_cols=24 Identities=38% Similarity=0.718 Sum_probs=19.2
Q ss_pred CCcccccccccCC-----CCeeeeecccc
Q 025742 122 TNTCEICCRSLLD-----SFRFCSLGCKL 145 (248)
Q Consensus 122 ~~~Ce~C~R~L~D-----~~rFCSL~CKv 145 (248)
..+|+.|++.+.. +-+|||..|..
T Consensus 18 ~~~C~~CG~~i~~~~~~r~krFCS~sCR~ 46 (49)
T 2l8e_A 18 LLKCEYCGKYAPAEQFRGSKRFCSMTCAK 46 (49)
T ss_dssp EEECTTTCCEEEGGGCTTTSSSCSHHHHH
T ss_pred CCcChhccCccccccCCCCCccCCHHHHh
Confidence 3579999999863 25999999973
No 14
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=62.35 E-value=1.8 Score=31.97 Aligned_cols=29 Identities=28% Similarity=0.607 Sum_probs=22.5
Q ss_pred CCcccccccccC-----CCCeeeeeccccCceec
Q 025742 122 TNTCEICCRSLL-----DSFRFCSLGCKLGAMKR 150 (248)
Q Consensus 122 ~~~Ce~C~R~L~-----D~~rFCSL~CKv~~~~~ 150 (248)
+..|-+|++... .-..|||-.||...+.+
T Consensus 9 ~~~CP~Cgkp~~W~~~~~~rPFCSeRCr~iDLg~ 42 (68)
T 1lv3_A 9 TVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGE 42 (68)
T ss_dssp EEECTTTCCEEECSSSSSCCSSSSHHHHHHHHSC
T ss_pred cCcCCCCCCcccccccCCCCcccCHHHHhhhHHH
Confidence 347999999985 23599999999866653
No 15
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=46.94 E-value=10 Score=28.01 Aligned_cols=30 Identities=33% Similarity=0.747 Sum_probs=22.6
Q ss_pred CCCCcceecccCCCc---cCCcchhc--CCCCCce
Q 025742 41 NKSECNMFCLDCMGN---AFCSYCLI--NHKDHRV 70 (248)
Q Consensus 41 ~knE~N~FCldC~~~---~~C~~Cl~--~H~~Hrv 70 (248)
+++|-...|.+|..+ ++|..|-. .|.+|++
T Consensus 12 ~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~ 46 (75)
T 3ny3_A 12 KVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRY 46 (75)
T ss_dssp CTTCEEEEETTTBSSTTCCBCHHHHHTSGGGGSCE
T ss_pred cCCCEEEECccCCCCCCeeEChHHCCCCCcCCceE
Confidence 467888899999865 46667744 6999865
No 16
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=43.93 E-value=12 Score=28.09 Aligned_cols=30 Identities=27% Similarity=0.586 Sum_probs=22.3
Q ss_pred CCCCcceecccCCCc---cCCcchhc--CCCCCce
Q 025742 41 NKSECNMFCLDCMGN---AFCSYCLI--NHKDHRV 70 (248)
Q Consensus 41 ~knE~N~FCldC~~~---~~C~~Cl~--~H~~Hrv 70 (248)
.++|--..|.+|..+ +||..|-. .|.+|++
T Consensus 16 ~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~~ 50 (82)
T 3nis_A 16 KIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHV 50 (82)
T ss_dssp CTTCEEEEETTTBSSTTCCBCTTTCCGGGGTTSCE
T ss_pred cCCCEEEEeeccCCCCCceEchhhCCCCCcCCceE
Confidence 467888889999875 46677744 6999865
No 17
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=43.43 E-value=8 Score=32.42 Aligned_cols=33 Identities=30% Similarity=0.480 Sum_probs=25.4
Q ss_pred cceeeechhhhh---hcccceeeEEECCcEEEEeeCC
Q 025742 79 HNVVRVNEIQKF---IDISCVQTYIINSAKIVFLNER 112 (248)
Q Consensus 79 hdVVRv~DIqkl---lD~S~IQtYvINsakVVFLn~R 112 (248)
++-|.+.|+..+ +-..+|+|| |||.-|||--..
T Consensus 19 ~nkv~MadLr~~l~~lGf~~V~Ty-I~SGNvvF~s~~ 54 (183)
T 2hiy_A 19 KNKVVMAELRQELTNLGLEKVESY-INSGNIFFTSID 54 (183)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEEE-TTTTEEEEEECS
T ss_pred CCcccHHHHHHHHHHcCCccceEE-EecCCEEEecCC
Confidence 345667777775 678999999 899999996443
No 18
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=41.11 E-value=11 Score=27.40 Aligned_cols=26 Identities=23% Similarity=0.686 Sum_probs=21.4
Q ss_pred CCCcceecccCCCccCCcchhcC-CCCC
Q 025742 42 KSECNMFCLDCMGNAFCSYCLIN-HKDH 68 (248)
Q Consensus 42 knE~N~FCldC~~~~~C~~Cl~~-H~~H 68 (248)
+.+...+|++|.. .||..|+.. |..-
T Consensus 14 ~~~av~~C~~C~~-~~C~~Cl~~~h~~~ 40 (101)
T 2jun_A 14 AQDAVKTCVTCEV-SYCDECLKATHPNK 40 (101)
T ss_dssp CCBCCEEETTTTE-EECHHHHHHHSCSC
T ss_pred CCCceEECCcCCh-HHhHHHCHHHhccC
Confidence 4567899999987 899999986 8743
No 19
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=31.73 E-value=22 Score=24.24 Aligned_cols=27 Identities=26% Similarity=0.647 Sum_probs=21.6
Q ss_pred eecccCCCccCCcchhc--CCCCCceeEEE
Q 025742 47 MFCLDCMGNAFCSYCLI--NHKDHRVVQIR 74 (248)
Q Consensus 47 ~FCldC~~~~~C~~Cl~--~H~~HrvlQIR 74 (248)
+-|..|..--||..|.. .| .|+.++|.
T Consensus 20 ~~C~~C~dyDLC~~C~~~~~H-~H~m~~~~ 48 (52)
T 1tot_A 20 WHCTVCEDYDLCINCYNTKSH-THKMVKWG 48 (52)
T ss_dssp EEESSSSSCEECHHHHHHHCC-CSSEEEEC
T ss_pred EEcCCCCCchhHHHHHhCCCC-CCceEEec
Confidence 56999987679999965 56 79888874
No 20
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=25.66 E-value=33 Score=25.38 Aligned_cols=30 Identities=40% Similarity=0.731 Sum_probs=22.0
Q ss_pred eecccCCC---ccCCcchhc------CC-CCCceeEEEec
Q 025742 47 MFCLDCMG---NAFCSYCLI------NH-KDHRVVQIRRS 76 (248)
Q Consensus 47 ~FCldC~~---~~~C~~Cl~------~H-~~HrvlQIRRs 76 (248)
+-|+.|.. --||..|.. .| ..|+.+.|.++
T Consensus 37 ykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~ 76 (82)
T 2fc7_A 37 WHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRS 76 (82)
T ss_dssp EEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSC
T ss_pred EECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCC
Confidence 45899976 569999953 46 57888887653
No 21
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.61 E-value=26 Score=24.63 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=16.5
Q ss_pred CCcccccccccCC------CCeeeeecccc
Q 025742 122 TNTCEICCRSLLD------SFRFCSLGCKL 145 (248)
Q Consensus 122 ~~~Ce~C~R~L~D------~~rFCSL~CKv 145 (248)
...|.+|+. ..- ..+||||.|--
T Consensus 12 ~~~C~vC~~-~~kY~CPrC~~~yCSl~C~k 40 (56)
T 2yqq_A 12 TVVCVICLE-KPKYRCPACRVPYCSVVCFR 40 (56)
T ss_dssp CCCCTTTCS-CCSEECTTTCCEESSHHHHH
T ss_pred CCccCcCcC-CCeeeCCCCCCCeeCHHHHH
Confidence 346889988 321 47999999964
No 22
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=21.86 E-value=19 Score=27.66 Aligned_cols=29 Identities=21% Similarity=0.549 Sum_probs=21.7
Q ss_pred eecccCCCccCCcchhc--CCCCCceeEEEe
Q 025742 47 MFCLDCMGNAFCSYCLI--NHKDHRVVQIRR 75 (248)
Q Consensus 47 ~FCldC~~~~~C~~Cl~--~H~~HrvlQIRR 75 (248)
+-|+.|..--||..|.. .|..|+.++|-+
T Consensus 47 ykC~~C~d~DLC~~C~~~~~H~~H~f~~i~~ 77 (98)
T 2dip_A 47 YKCTECIEYHLCQECFDSYCHLSHTFTFREK 77 (98)
T ss_dssp EEESSSSSCEEEHHHHHTTSGGGSCEEECCS
T ss_pred EECCCCCCccHHHHHHccCCCCCCCeeEecC
Confidence 44888877679999955 577888777654
No 23
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=21.15 E-value=38 Score=24.33 Aligned_cols=24 Identities=25% Similarity=0.740 Sum_probs=20.4
Q ss_pred CCcceecccCCCccCCcchhcC-CCC
Q 025742 43 SECNMFCLDCMGNAFCSYCLIN-HKD 67 (248)
Q Consensus 43 nE~N~FCldC~~~~~C~~Cl~~-H~~ 67 (248)
.+-...|+.|.. .+|..|+.. |..
T Consensus 42 ~~A~ksCl~C~~-s~C~~hl~~~H~~ 66 (78)
T 2ffw_A 42 QDAVKTCVTCEV-SYCDECLKATHPN 66 (78)
T ss_dssp CBCCEEETTTTE-EECHHHHHHHSCC
T ss_pred CCCeeEccCccc-hhhhhhhHhhcCC
Confidence 567789999998 899999996 854
No 24
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.48 E-value=43 Score=24.13 Aligned_cols=28 Identities=32% Similarity=0.570 Sum_probs=21.0
Q ss_pred CCccccccccc---CC--CCeeeeeccccCcee
Q 025742 122 TNTCEICCRSL---LD--SFRFCSLGCKLGAMK 149 (248)
Q Consensus 122 ~~~Ce~C~R~L---~D--~~rFCSL~CKv~~~~ 149 (248)
.+.|-+|+|-= -| .-+-|||.||-..+.
T Consensus 19 ePvCvvCGryGeYICd~Td~DVCSlECK~~~l~ 51 (60)
T 2yqp_A 19 EPICVVCGRYGEYICDKTDEDVCSLECKAKHLL 51 (60)
T ss_dssp SCCCSSSSSCCSEECSSSCCEESSHHHHHHHHH
T ss_pred CceEEEecCccceeecCCCcchhhHHHHHHHHH
Confidence 45699999854 23 479999999976664
No 25
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=20.15 E-value=17 Score=30.75 Aligned_cols=46 Identities=22% Similarity=0.405 Sum_probs=31.9
Q ss_pred CcceecccCCCc-----------cCCcchhcCCC--CCceeEEEeccccceeeechhhhh
Q 025742 44 ECNMFCLDCMGN-----------AFCSYCLINHK--DHRVVQIRRSSYHNVVRVNEIQKF 90 (248)
Q Consensus 44 E~N~FCldC~~~-----------~~C~~Cl~~H~--~HrvlQIRRssYhdVVRv~DIqkl 90 (248)
+-|..|.||... -+|-.|..-|+ +.++-+| |+.-.|...-++|+.+
T Consensus 20 p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkV-KSltLD~Wt~e~l~~m 78 (163)
T 3sub_A 20 ESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIV-RSIKMDIFTDEQLKYI 78 (163)
T ss_dssp GGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCE-EETTTCCCCHHHHHHH
T ss_pred CCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCee-eeccccCcCHHHHHHH
Confidence 578999999752 28999988776 4566666 5666676666666543
Done!