Query 025742
Match_columns 248
No_of_seqs 145 out of 187
Neff 3.9
Searched_HMMs 13730
Date Mon Mar 25 16:37:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025742.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025742hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2d8ua1 g.43.1.1 (A:8-58) Ubiq 96.1 0.0012 8.7E-08 43.7 2.3 37 33-73 3-41 (51)
2 d1frea_ g.43.1.1 (A:) Nuclear 96.0 0.0024 1.7E-07 40.5 3.1 34 33-71 2-37 (39)
3 d2csva1 g.43.1.1 (A:8-66) Trip 96.0 0.0013 9.4E-08 44.7 1.8 36 33-73 13-49 (59)
4 d2djaa1 g.43.1.1 (A:8-78) Midl 95.7 0.0016 1.1E-07 45.1 1.4 38 33-74 13-52 (71)
5 d2dq5a1 g.43.1.1 (A:168-214) M 95.6 0.001 7.3E-08 43.6 0.2 36 33-72 7-44 (47)
6 d2dida1 g.43.1.1 (A:8-47) Trip 94.6 0.0086 6.3E-07 37.9 2.4 34 33-71 3-38 (40)
7 d2dasa1 g.39.1.17 (A:8-56) Zin 56.4 2.1 0.00016 28.2 1.5 28 117-144 8-45 (49)
8 d1lv3a_ g.39.1.9 (A:) Hypothet 52.0 2.2 0.00016 29.3 1.0 29 122-150 6-39 (65)
9 d1x4sa1 g.85.1.2 (A:8-53) Zinc 40.8 2.4 0.00018 27.4 -0.2 25 120-144 5-35 (46)
10 d2fc7a1 g.44.1.6 (A:8-76) Zinc 32.7 11 0.0008 25.3 2.2 31 46-76 29-69 (69)
11 d1dcqa2 g.45.1.1 (A:247-368) P 27.6 5.5 0.0004 29.5 -0.2 48 45-93 14-74 (122)
12 d1j2oa1 g.39.1.3 (A:1-30) Rhom 25.6 12 0.00084 22.2 1.0 16 121-136 2-17 (30)
13 d1tota1 g.44.1.6 (A:1-52) CREB 22.6 19 0.0014 23.2 1.8 26 47-73 20-47 (52)
14 d1d0qa_ g.41.3.2 (A:) Zinc-bin 21.6 19 0.0014 25.3 1.8 27 28-54 33-65 (102)
No 1
>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.13 E-value=0.0012 Score=43.73 Aligned_cols=37 Identities=35% Similarity=0.758 Sum_probs=29.2
Q ss_pred CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeEE
Q 025742 33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQI 73 (248)
Q Consensus 33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI 73 (248)
.|..|.+ ...++||.+|.. .+|..|.. .|++|.+.-|
T Consensus 3 ~C~~H~~---e~l~~yC~~c~~-~iC~~C~~~~~Hk~H~v~~l 41 (51)
T d2d8ua1 3 MCKEHED---EKINIYCLTCEV-PTCSMCKVFGIHKACEVAPL 41 (51)
T ss_dssp CCSSCTT---CCCCSEESSSCC-CCCSHHHHSSSTTSSCEECT
T ss_pred CCcccCc---CcceEEcCCCCc-eECccccCcCCcCcCcCcCH
Confidence 5888864 237899999997 89999953 7999976554
No 2
>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=95.96 E-value=0.0024 Score=40.48 Aligned_cols=34 Identities=24% Similarity=0.560 Sum_probs=28.1
Q ss_pred CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCcee
Q 025742 33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVV 71 (248)
Q Consensus 33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~Hrvl 71 (248)
.|+.|.. ..++||.+|.. .+|..|.. .|++|.++
T Consensus 2 ~C~~H~e----~l~lfC~~d~~-~iC~~C~~~~~H~~H~v~ 37 (39)
T d1frea_ 2 KCSEHDE----RLKLYCKDDGT-LSCVICRDSLKHASHNFL 37 (39)
T ss_dssp CCCSSCS----SCCCCCCSSSS-SSCCTTSSCSSCTTCCCC
T ss_pred CCcccCc----ceeEEcccCCc-EeeccCcCCCCcCCCcEe
Confidence 6899953 47899999987 89999954 69999875
No 3
>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.95 E-value=0.0013 Score=44.73 Aligned_cols=36 Identities=33% Similarity=0.841 Sum_probs=29.7
Q ss_pred CCccCCCCCCCCcceecccCCCccCCcchhc-CCCCCceeEE
Q 025742 33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI-NHKDHRVVQI 73 (248)
Q Consensus 33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQI 73 (248)
.|..|.. ...+||.+|.. .+|..|+. .|++|.++.|
T Consensus 13 ~C~~H~e----~l~lyC~~c~~-~iC~~C~~~~H~~H~~~~l 49 (59)
T d2csva1 13 KCPVHGK----TMELFCQTDQT-CICYLCMFQEHKNHSTVTV 49 (59)
T ss_dssp BCTTTCC----BCCEEESSSCC-EECHHHHHTTTSSSCEEEH
T ss_pred chhhhCC----ccceECCCCCc-eECcccCcccCCCCCeeCH
Confidence 6999942 47799999997 89999976 7999877655
No 4
>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.68 E-value=0.0016 Score=45.07 Aligned_cols=38 Identities=29% Similarity=0.804 Sum_probs=30.0
Q ss_pred CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCceeEEE
Q 025742 33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVVQIR 74 (248)
Q Consensus 33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQIR 74 (248)
.|..|.+ ...++||.+|.. .+|..|.. .|++|.+.-|.
T Consensus 13 ~C~~H~~---e~l~~fC~~C~~-~iC~~C~~~~~Hk~H~~~~i~ 52 (71)
T d2djaa1 13 TCLDHEN---EKVNMYCVSDDQ-LICALCKLVGRHRDHQVASLN 52 (71)
T ss_dssp CCSSCSS---SCCCEEETTTTE-EECHHHHHTSTTTTCCBCCCC
T ss_pred cCcccCC---ccceeEcCCCCc-eeccccccCCCCCCCcCcCHH
Confidence 5999964 126899999987 89999953 69999887664
No 5
>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.64 E-value=0.001 Score=43.59 Aligned_cols=36 Identities=33% Similarity=0.824 Sum_probs=28.6
Q ss_pred CCccCCCCCCCCcceecccCCCccCCcchh-c-CCCCCceeE
Q 025742 33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCL-I-NHKDHRVVQ 72 (248)
Q Consensus 33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl-~-~H~~HrvlQ 72 (248)
.|+.|.+ .+.++||.+|.. .+|..|. . .|++|.+.-
T Consensus 7 ~C~~H~~---e~l~~yC~~C~~-~iC~~C~~~~~H~~H~~~~ 44 (47)
T d2dq5a1 7 MCLEHED---EKVNMYCVTDDQ-LICALCKLVGRHRDHQVAA 44 (47)
T ss_dssp BCSSCTT---SBEEEEETTTTE-EEEHHHHHTSSTTSSCCCC
T ss_pred cchhhCC---CcceEEcCCCCc-cCCccCcCcCCcCCCeEee
Confidence 4999964 346899999997 8999994 3 799997653
No 6
>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.63 E-value=0.0086 Score=37.91 Aligned_cols=34 Identities=35% Similarity=0.770 Sum_probs=28.3
Q ss_pred CCccCCCCCCCCcceecccCCCccCCcchhc--CCCCCcee
Q 025742 33 PCVVHGDSNKSECNMFCLDCMGNAFCSYCLI--NHKDHRVV 71 (248)
Q Consensus 33 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~Hrvl 71 (248)
-|+.|.. ..++||.+|.. .+|..|.. .|++|+++
T Consensus 3 ~C~~H~e----~l~lfC~~d~~-~iC~~C~~~~~H~~H~v~ 38 (40)
T d2dida1 3 LCPQHHE----ALSLFCYEDQE-AVCLICAISHTHRAHTVV 38 (40)
T ss_dssp BCTTTCC----BCCEEESSSCS-EECHHHHTSSTTTTSCEE
T ss_pred cchhhCc----cceEEcccCCc-EeeccCcCCCCcCCCcEe
Confidence 5888943 48899999987 89999964 79999886
No 7
>d2dasa1 g.39.1.17 (A:8-56) Zinc finger MYM-type protein 5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.35 E-value=2.1 Score=28.15 Aligned_cols=28 Identities=32% Similarity=0.572 Sum_probs=22.3
Q ss_pred CCCCCCCcccccccccCC----------CCeeeeeccc
Q 025742 117 PGKGVTNTCEICCRSLLD----------SFRFCSLGCK 144 (248)
Q Consensus 117 ~~kg~~~~Ce~C~R~L~D----------~~rFCSL~CK 144 (248)
+.+.+.-+|..|.+.|+. +-.|||..|-
T Consensus 8 p~~a~~v~Ca~Ckk~lqKGQTAyqrkGs~~LFCSt~Cl 45 (49)
T d2dasa1 8 LTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCL 45 (49)
T ss_dssp CSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHH
T ss_pred CCCceEeEecccchHHhccchHHhhCCCcceeEcchhh
Confidence 455667799999999984 3589999984
No 8
>d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG {Escherichia coli [TaxId: 562]}
Probab=51.96 E-value=2.2 Score=29.28 Aligned_cols=29 Identities=28% Similarity=0.608 Sum_probs=21.8
Q ss_pred CCcccccccccC---C-C-CeeeeeccccCceec
Q 025742 122 TNTCEICCRSLL---D-S-FRFCSLGCKLGAMKR 150 (248)
Q Consensus 122 ~~~Ce~C~R~L~---D-~-~rFCSL~CKv~~~~~ 150 (248)
+-.|-+|++... + . .-|||-.||+..+.+
T Consensus 6 ~v~CP~C~k~~~w~~~~~~rPFCS~RCk~IDLg~ 39 (65)
T d1lv3a_ 6 TVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGE 39 (65)
T ss_dssp EEECTTTCCEEECSSSSSCCSSSSHHHHHHHHSC
T ss_pred eeeCCCCCCccccCCCCCcCCchhHhhhhccHHH
Confidence 446999999773 2 3 479999999866653
No 9
>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.78 E-value=2.4 Score=27.42 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=18.5
Q ss_pred CCCCcccccccccCC------CCeeeeeccc
Q 025742 120 GVTNTCEICCRSLLD------SFRFCSLGCK 144 (248)
Q Consensus 120 g~~~~Ce~C~R~L~D------~~rFCSL~CK 144 (248)
|....|++|...-.- ..+||||.|=
T Consensus 5 ~~~~lC~vC~~~~~KY~CP~C~~~yCSL~Cy 35 (46)
T d1x4sa1 5 GPCGFCPAGEVQPARYTCPRCNAPYCSLRCY 35 (46)
T ss_dssp EEECSSCTTCCEEECEECTTTCCEESSHHHH
T ss_pred CCCccChhhhCccccccCCCCCCceechHHH
Confidence 444578888877642 4799999995
No 10
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.71 E-value=11 Score=25.32 Aligned_cols=31 Identities=45% Similarity=0.825 Sum_probs=21.5
Q ss_pred ceecccC---CCccCCcchhc------CCC-CCceeEEEec
Q 025742 46 NMFCLDC---MGNAFCSYCLI------NHK-DHRVVQIRRS 76 (248)
Q Consensus 46 N~FCldC---~~~~~C~~Cl~------~H~-~HrvlQIRRs 76 (248)
-+-|++| ..--||..|.. .|+ .|++..|.|+
T Consensus 29 R~~C~~Cp~~~d~DLC~~C~~~~~~~~~H~~~H~~~~I~~~ 69 (69)
T d2fc7a1 29 RWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRS 69 (69)
T ss_dssp EEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSC
T ss_pred ccCCCCCCCCCCccchHHhhcCcccCCCCCCCCCEEEeecC
Confidence 3569999 33369999953 354 6888888764
No 11
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.64 E-value=5.5 Score=29.50 Aligned_cols=48 Identities=23% Similarity=0.337 Sum_probs=32.2
Q ss_pred cceecccCCCc-----------cCCcchhcCCCC--CceeEEEeccccceeeechhhhhhcc
Q 025742 45 CNMFCLDCMGN-----------AFCSYCLINHKD--HRVVQIRRSSYHNVVRVNEIQKFIDI 93 (248)
Q Consensus 45 ~N~FCldC~~~-----------~~C~~Cl~~H~~--HrvlQIRRssYhdVVRv~DIqkllD~ 93 (248)
-|-.|.||... -+|..|..-|+. -++-.| |+.-.|.....||+.+.-.
T Consensus 14 ~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~V-kS~~ld~w~~~~i~~~~~~ 74 (122)
T d1dcqa2 14 GNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRM-QSLTLDVLGTSELLLAKNI 74 (122)
T ss_dssp TTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCE-EETTTSCCCGGGGHHHHHS
T ss_pred CCCccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEe-eecccCCCCHHHHHHHHHH
Confidence 57899999652 289999887763 223334 5666777777777766543
No 12
>d1j2oa1 g.39.1.3 (A:1-30) Rhombotin-2 (Lmo2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.62 E-value=12 Score=22.22 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=13.0
Q ss_pred CCCcccccccccCCCC
Q 025742 121 VTNTCEICCRSLLDSF 136 (248)
Q Consensus 121 ~~~~Ce~C~R~L~D~~ 136 (248)
....|..|++.+.|.|
T Consensus 2 ~~~~CaGC~~~I~DRf 17 (30)
T d1j2oa1 2 SLLTCGGCQQNIGDRY 17 (30)
T ss_dssp CCBCBSSSCSCBCSSE
T ss_pred CCcccCCCCCcchHHH
Confidence 4567999999999954
No 13
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.63 E-value=19 Score=23.23 Aligned_cols=26 Identities=27% Similarity=0.685 Sum_probs=20.1
Q ss_pred eecccCCCccCCcchhc--CCCCCceeEE
Q 025742 47 MFCLDCMGNAFCSYCLI--NHKDHRVVQI 73 (248)
Q Consensus 47 ~FCldC~~~~~C~~Cl~--~H~~HrvlQI 73 (248)
.-|..|..--||..|.. .| .|+.++|
T Consensus 20 y~C~~C~DfDLC~~C~~~~~H-~H~m~k~ 47 (52)
T d1tota1 20 WHCTVCEDYDLCINCYNTKSH-THKMVKW 47 (52)
T ss_dssp EEESSSSSCEECHHHHHHHCC-CSSEEEE
T ss_pred eECCCCCCcccHHHHhcCCCc-CCCeEEe
Confidence 55999988789999965 45 5877765
No 14
>d1d0qa_ g.41.3.2 (A:) Zinc-binding domain of DNA primase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=21.62 E-value=19 Score=25.34 Aligned_cols=27 Identities=37% Similarity=0.848 Sum_probs=18.5
Q ss_pred ccCCCCCccCCCCCCC-----Cccee-cccCCC
Q 025742 28 ASYFIPCVVHGDSNKS-----ECNMF-CLDCMG 54 (248)
Q Consensus 28 t~FF~~C~~H~~~~kn-----E~N~F-CldC~~ 54 (248)
..|...|+.|.+...+ ++|.| |..|..
T Consensus 33 ~~~~~~CPfh~d~~~S~~v~~~~~~~~Cf~Cg~ 65 (102)
T d1d0qa_ 33 RNYFGLCPFHGEKTPSFSVSPEKQIFHCFGCGA 65 (102)
T ss_dssp TEEEECCSSSCCSSCCEEEETTTTEEEETTTCC
T ss_pred CceEEeccccCCCCcceeEcCCchheeeehhcc
Confidence 5677899999875443 35544 787764
Done!