BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025743
         (248 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DGW|C Chain C, Crystal Structure Of The Sf3a Splicing Factor Complex Of
           U2 Snrnp
          Length = 231

 Score = 32.3 bits (72), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 26/118 (22%)

Query: 23  GRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSK--PRHRFMSSFEQRVQPFDKRYQYLM 80
           G  G  +   +  E K+ S+       + +D +K  P  R +S  E       K  ++L+
Sbjct: 114 GSVGXAIQVNYSSEVKENSV-------DSDDKAKVPPLIRIVSGLELS-DTKQKGKKFLV 165

Query: 81  FAAEPYEIIAFKVPSTEI---------------DKSTPKFFSHWDPDSKMFTLQLYFK 123
            A EP+E IA ++P  EI               D+   K  + WD  SK++ +Q +FK
Sbjct: 166 IAYEPFENIAIELPPNEILFSENNDXDNNNDGVDELNKKC-TFWDAISKLYYVQFFFK 222


>pdb|3Q66|C Chain C, Structure Of The Vps75-Rtt109 Histone Chaperone-Lysine
           Acetyltransferase Complex (Full-Length Proteins In Space
           Group P6122)
 pdb|3Q68|C Chain C, Structure Of The Vps75-Rtt109 Histone Chaperone-Lysine
           Acetyltransferase Complex (Full-Length Proteins In Space
           Group P212121)
          Length = 442

 Score = 28.5 bits (62), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 8/72 (11%)

Query: 57  PRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPK-------FFSHW 109
           P    ++ F   V P  ++++YL   + P E  A   P+ + DK  PK       FFS +
Sbjct: 4   PNSMSLNDFLSSVLPVSEQFEYLSLQSIPLETHAVVTPNKD-DKRVPKSTIKTQHFFSLF 62

Query: 110 DPDSKMFTLQLY 121
                 F+L++Y
Sbjct: 63  HQGKVFFSLEVY 74


>pdb|1J9J|A Chain A, Crystal Structure Analysis Of Sure Protein From T.Maritima
 pdb|1J9J|B Chain B, Crystal Structure Analysis Of Sure Protein From T.Maritima
 pdb|1J9K|A Chain A, Crystal Structure Of Sure Protein From T.Maritima In
           Complex With Tungstate
 pdb|1J9K|B Chain B, Crystal Structure Of Sure Protein From T.Maritima In
           Complex With Tungstate
 pdb|1J9L|A Chain A, Crystal Structure Of Sure Protein From T.Maritima In
           Complex With Vanadate
 pdb|1J9L|B Chain B, Crystal Structure Of Sure Protein From T.Maritima In
           Complex With Vanadate
          Length = 247

 Score = 28.5 bits (62), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 56  KPRHRFMSSFEQRVQPFDKRYQYLM 80
           + R R+   FE+RV PF ++Y ++M
Sbjct: 178 QSRRRWNDYFEERVSPFGEKYYWMM 202


>pdb|2ZFN|A Chain A, Self-Acetylation Mediated Histone H3 Lysine 56 Acetylation
           By Rtt109
          Length = 460

 Score = 28.1 bits (61), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 62  MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPK-------FFSHWDPDSK 114
           ++ F   V P  ++++YL   + P E  A   P+ + DK  PK       FFS +     
Sbjct: 27  LNDFLSSVLPVSEQFEYLSLQSIPLETHAVVTPNKD-DKRVPKSTIKTQHFFSLFHQGKV 85

Query: 115 MFTLQLY 121
            F+L++Y
Sbjct: 86  FFSLEVY 92


>pdb|2RIM|A Chain A, Crystal Structure Of Rtt109
          Length = 457

 Score = 28.1 bits (61), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 62  MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPK-------FFSHWDPDSK 114
           ++ F   V P  ++++YL   + P E  A   P+ + DK  PK       FFS +     
Sbjct: 24  LNDFLSSVLPVSEQFEYLSLQSIPLETHAVVTPNKD-DKRVPKSTIKTQHFFSLFHQGKV 82

Query: 115 MFTLQLY 121
            F+L++Y
Sbjct: 83  FFSLEVY 89


>pdb|3Q33|A Chain A, Structure Of The Rtt109-AccoaVPS75 COMPLEX AND
           IMPLICATIONS FOR Chaperone-Mediated Histone Acetylation
 pdb|3Q35|A Chain A, Structure Of The Rtt109-AccoaVPS75 COMPLEX AND
           IMPLICATIONS FOR Chaperone-Mediated Histone Acetylation
          Length = 438

 Score = 28.1 bits (61), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 62  MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPK-------FFSHWDPDSK 114
           ++ F   V P  ++++YL   + P E  A   P+ + DK  PK       FFS +     
Sbjct: 5   LNDFLSSVLPVSEQFEYLSLQSIPLETHAVVTPNKD-DKRVPKSTIKTQHFFSLFHQGKV 63

Query: 115 MFTLQLY 121
            F+L++Y
Sbjct: 64  FFSLEVY 70


>pdb|3QM0|A Chain A, Crystal Structure Of Rtt109-Ac-Coa Complex
          Length = 388

 Score = 28.1 bits (61), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 62  MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPK-------FFSHWDPDSK 114
           ++ F   V P  ++++YL   + P E  A   P+ + DK  PK       FFS +     
Sbjct: 5   LNDFLSSVLPVSEQFEYLSLQSIPLETHAVVTPNKD-DKRVPKSTIKTQHFFSLFHQGKV 63

Query: 115 MFTLQLY 121
            F+L++Y
Sbjct: 64  FFSLEVY 70


>pdb|3CZ7|A Chain A, Molecular Basis For The Autoregulation Of The Protein
           Acetyl Transferase Rtt109
          Length = 364

 Score = 27.7 bits (60), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)

Query: 62  MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPK-------FFSHWDPDSK 114
           ++ F   V P  ++++YL   + P E  A   P+ + DK  PK       FFS +     
Sbjct: 3   LNDFLSSVLPVSEQFEYLSLQSIPLETHAVVTPNKD-DKRVPKSTIKTQHFFSLFHQGKV 61

Query: 115 MFTLQLY 121
            F+L++Y
Sbjct: 62  FFSLEVY 68


>pdb|2BTP|A Chain A, 14-3-3 Protein Theta (Human) Complexed To Peptide
 pdb|2BTP|B Chain B, 14-3-3 Protein Theta (Human) Complexed To Peptide
          Length = 256

 Score = 27.3 bits (59), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 23/99 (23%), Positives = 45/99 (45%), Gaps = 4/99 (4%)

Query: 29  VTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEI 88
           VT+Q    + +   L  + Y  +    +   R +SS EQ+    DK+ Q +    E  E 
Sbjct: 51  VTEQGAELSNEERNLLSVAYKNVVGGRRSAWRVISSIEQKTDTSDKKLQLIKDYREKVES 110

Query: 89  IAFKVPSTEIDKSTPKFFSHW-DPDSKMFTLQL---YFK 123
               + +T ++       ++  +P+SK+F L++   YF+
Sbjct: 111 ELRSICTTVLELLDKYLIANATNPESKVFYLKMKGDYFR 149


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,493,112
Number of Sequences: 62578
Number of extensions: 153141
Number of successful extensions: 313
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 10
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)