BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025743
         (248 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2 OS=Homo sapiens GN=SF3A2 PE=1 SV=2
          Length = 464

 Score =  152 bits (383), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 84/102 (82%)

Query: 22  IGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMF 81
           IGRPGY+VTKQ D E  Q+SLLFQI+YPEI +   PRHRFMS++EQR++P D+R+QYL+ 
Sbjct: 112 IGRPGYKVTKQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLM 171

Query: 82  AAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK 123
           AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +FK
Sbjct: 172 AAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFK 213


>sp|Q6AXT8|SF3A2_RAT Splicing factor 3A subunit 2 OS=Rattus norvegicus GN=Sf3a2 PE=2
           SV=1
          Length = 471

 Score =  151 bits (382), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 84/102 (82%)

Query: 22  IGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMF 81
           IGRPGY+VTKQ D E  Q+SLLFQI+YPEI +   PRHRFMS++EQR++P D+R+QYL+ 
Sbjct: 112 IGRPGYKVTKQRDTEMGQQSLLFQIDYPEIAEGVMPRHRFMSAYEQRIEPPDRRWQYLLM 171

Query: 82  AAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK 123
           AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +FK
Sbjct: 172 AAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFK 213


>sp|A5PJN8|SF3A2_BOVIN Splicing factor 3A subunit 2 OS=Bos taurus GN=SF3A2 PE=2 SV=1
          Length = 477

 Score =  151 bits (381), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 66/102 (64%), Positives = 84/102 (82%)

Query: 22  IGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMF 81
           IGRPGY+VTKQ D E  Q+SLLFQI+YPEI +   PRHRFMS++EQR++P D+R+QYL+ 
Sbjct: 112 IGRPGYKVTKQRDTEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLM 171

Query: 82  AAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK 123
           AAEPYE IAFKVPS EIDK+  KF++HW+ ++K F LQ +FK
Sbjct: 172 AAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFK 213


>sp|Q54B65|SF3A2_DICDI Splicing factor 3A subunit 2 OS=Dictyostelium discoideum GN=sf3a2
           PE=3 SV=1
          Length = 215

 Score =  150 bits (379), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/110 (65%), Positives = 88/110 (80%), Gaps = 4/110 (3%)

Query: 17  KQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRY 76
           K+ IKIGRPGY++ KQ D +T Q SLLFQI+YPEIE   +PRHR MS+FEQRV+  +K Y
Sbjct: 106 KKTIKIGRPGYKIIKQRDSKTGQLSLLFQIDYPEIESGLQPRHRIMSAFEQRVEQPNKDY 165

Query: 77  QYLMFAAEPYEIIAFKVPSTEIDKST---PKFFSHWDPDSKMFTLQLYFK 123
           QYL+FAAEPYE IAFK+P+ EID++T    KFF+HWD + K FTLQLYFK
Sbjct: 166 QYLLFAAEPYETIAFKIPNKEIDRTTGPDGKFFTHWDRN-KTFTLQLYFK 214


>sp|Q62203|SF3A2_MOUSE Splicing factor 3A subunit 2 OS=Mus musculus GN=Sf3a2 PE=2 SV=2
          Length = 475

 Score =  131 bits (330), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 63/102 (61%), Positives = 76/102 (74%), Gaps = 10/102 (9%)

Query: 22  IGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMF 81
           IGRPGY+VTKQ D E  Q+SLLFQI+YPEI +   PRHRFMS++EQR++P D+R+QYL+ 
Sbjct: 112 IGRPGYKVTKQRDTEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLM 171

Query: 82  AAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK 123
           AAEPYE IAFKVPS EIDK+  KF          F LQ +FK
Sbjct: 172 AAEPYETIAFKVPSREIDKAEGKF----------FFLQFHFK 203


>sp|Q9P7L8|SAP62_SCHPO Pre-mRNA-splicing factor sap62 OS=Schizosaccharomyces pombe (strain
           972 / ATCC 24843) GN=sap62 PE=1 SV=1
          Length = 217

 Score =  104 bits (260), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/122 (45%), Positives = 84/122 (68%), Gaps = 11/122 (9%)

Query: 1   MLLLSPSPTSEKSTFVKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHR 60
           +L +S S    K    K  +KIGRPGY+V+K  + E+ +  L FQI+YP+IE  +KPR+R
Sbjct: 101 LLGISQSHVQVK----KSVVKIGRPGYKVSKIREAESGKFGLRFQIKYPDIEVNAKPRYR 156

Query: 61  FMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQL 120
            MS++EQRV+  D+++QYL+ AAEPYE IAFK     ID++  KF+S+WD  +  +T+Q 
Sbjct: 157 IMSAYEQRVEAPDRKFQYLVVAAEPYESIAFK-----IDRAPGKFWSYWDAPT--YTIQF 209

Query: 121 YF 122
           ++
Sbjct: 210 FY 211


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.137    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,402,765
Number of Sequences: 539616
Number of extensions: 8828239
Number of successful extensions: 221692
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2693
Number of HSP's successfully gapped in prelim test: 3308
Number of HSP's that attempted gapping in prelim test: 49748
Number of HSP's gapped (non-prelim): 56664
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)