Query 025743
Match_columns 248
No_of_seqs 158 out of 218
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 09:03:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0227 Splicing factor 3a, su 100.0 8.5E-53 1.9E-57 368.3 9.1 120 10-129 100-219 (222)
2 COG5246 PRP11 Splicing factor 100.0 2.2E-37 4.8E-42 270.5 8.5 116 10-127 105-221 (222)
3 PF09732 CactinC_cactus: Cactu 99.8 1.6E-18 3.5E-23 143.3 8.3 84 35-126 36-122 (125)
4 KOG1924 RhoA GTPase effector D 98.8 1.3E-08 2.8E-13 104.7 9.9 36 182-222 568-603 (1102)
5 KOG1924 RhoA GTPase effector D 98.6 1.6E-07 3.6E-12 96.8 9.9 13 191-203 567-579 (1102)
6 KOG3671 Actin regulatory prote 97.7 0.00057 1.2E-08 68.3 12.7 43 109-151 284-327 (569)
7 KOG2370 Cactin [Signal transdu 97.4 9E-05 1.9E-09 73.8 3.2 78 39-125 538-619 (623)
8 KOG0132 RNA polymerase II C-te 94.8 0.62 1.4E-05 49.3 13.7 15 104-118 500-514 (894)
9 PF06346 Drf_FH1: Formin Homol 82.3 10 0.00022 33.2 8.4 11 221-231 142-152 (160)
10 PHA03378 EBNA-3B; Provisional 69.6 1E+02 0.0022 33.5 12.9 13 224-236 777-789 (991)
11 KOG1830 Wiskott Aldrich syndro 57.3 2.3E+02 0.005 29.1 12.4 11 24-34 189-199 (518)
12 KOG2893 Zn finger protein [Gen 56.6 1E+02 0.0022 29.6 9.4 12 19-30 5-16 (341)
13 KOG1923 Rac1 GTPase effector F 46.6 1.5E+02 0.0032 32.2 9.7 12 112-123 241-252 (830)
14 PF08190 PIH1: pre-RNA process 45.9 99 0.0021 27.9 7.4 69 36-120 257-326 (328)
15 PF09034 TRADD_N: TRADD, N-ter 43.7 6.1 0.00013 32.9 -0.6 37 23-66 5-41 (111)
16 KOG4849 mRNA cleavage factor I 38.7 3.1E+02 0.0068 27.7 10.0 25 61-85 111-135 (498)
17 PRK03999 translation initiatio 38.4 47 0.001 27.6 3.8 86 8-94 5-101 (129)
18 PHA03378 EBNA-3B; Provisional 34.0 4.3E+02 0.0093 29.0 10.7 8 138-145 690-697 (991)
19 PHA02919 host-range protein; P 33.7 1E+02 0.0023 27.0 5.3 60 24-84 27-87 (150)
20 PHA03247 large tegument protei 32.6 8.5E+02 0.018 30.7 13.5 9 104-112 2534-2542(3151)
21 PF08004 DUF1699: Protein of u 32.3 47 0.001 28.5 2.9 59 58-117 2-88 (131)
22 COG0231 Efp Translation elonga 31.6 63 0.0014 27.0 3.6 102 18-119 13-126 (131)
23 PF10974 DUF2804: Protein of u 29.6 59 0.0013 30.5 3.4 43 73-118 39-81 (333)
24 PF08954 DUF1900: Domain of un 29.1 41 0.0009 28.3 2.1 23 96-118 5-27 (136)
25 COG0774 LpxC UDP-3-O-acyl-N-ac 28.0 57 0.0012 31.4 3.0 88 22-112 66-176 (300)
26 KOG0132 RNA polymerase II C-te 26.2 5.6E+02 0.012 28.2 10.0 25 108-132 531-555 (894)
27 PF13584 BatD: Oxygen toleranc 25.9 1.4E+02 0.003 28.8 5.3 33 75-118 339-371 (484)
28 PF11281 DUF3083: Protein of u 25.6 71 0.0015 31.0 3.2 31 99-129 243-273 (316)
29 TIGR00037 eIF_5A translation i 25.4 57 0.0012 27.1 2.3 75 18-94 16-102 (130)
30 KOG2893 Zn finger protein [Gen 23.3 5.4E+02 0.012 24.8 8.5 9 190-198 177-185 (341)
31 COG5040 BMH1 14-3-3 family pro 21.6 7.2 0.00016 36.2 -4.0 40 41-80 43-82 (268)
32 PF14492 EFG_II: Elongation Fa 20.7 58 0.0013 24.1 1.3 24 98-121 28-51 (75)
33 KOG4307 RNA binding protein RB 20.3 30 0.00066 37.1 -0.4 35 20-68 860-894 (944)
34 PHA02854 putative host range p 20.1 3.1E+02 0.0066 24.8 5.9 59 24-83 28-87 (178)
No 1
>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=100.00 E-value=8.5e-53 Score=368.32 Aligned_cols=120 Identities=62% Similarity=1.007 Sum_probs=116.0
Q ss_pred CcchhhhhhhhhcCCCCeeEEeeeCccccccceEEEeeccCccCCCCCceeeecccccccCCCCCCccEEEEEecCCccc
Q 025743 10 SEKSTFVKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEII 89 (248)
Q Consensus 10 s~~~v~~rk~vKIGrPgYKVtKvrDpeT~q~gLlfqV~YPei~~g~~Pr~RfMSayEQkvE~pdk~~QYLl~AaEPYEtI 89 (248)
++..+++|++||||||||||||+||++.+|.||||||+|++|+++++|+|||||+|||+||++|++||||||||||||||
T Consensus 100 ~k~~v~vk~~vkigrpgykvtk~r~~~~gq~~L~fQv~Yp~i~~~~~Pr~rfmssyeq~ve~~dk~~qyLvfaaePyE~I 179 (222)
T KOG0227|consen 100 QKIIVEVKKFVKIGRPGYKVTKQRDPENGQQGLLFQVNYPEIEEGIMPRHRFMSSYEQKVEPPDKSWQYLVFAAEPYENI 179 (222)
T ss_pred ccchhhhhhhhhcCCCcceeeeeecCccCceeeEEEecchhhhhccCCcchhhhhhHhhcCCccccceEEEEEeccccce
Confidence 56688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCcccccCCCcceeeecCCCCeEEEEEeeecCCCCC
Q 025743 90 AFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPVEG 129 (248)
Q Consensus 90 aFKIPn~EIDk~~~k~wt~WD~dtK~F~LQf~Fk~e~~ea 129 (248)
||||||+|||+++||||||||.|||+|+|||||+..+.+.
T Consensus 180 afk~p~~Eid~se~Kf~t~wd~~tk~y~lqF~fk~~~~~~ 219 (222)
T KOG0227|consen 180 AFKVPSREIDKSEGKFWTHWDAETKQYTLQFFFKQAEPEQ 219 (222)
T ss_pred eeecCchhhhhccCceeeeecCCCceEEEEEEecccCccC
Confidence 9999999999999999999999999999999999877654
No 2
>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=100.00 E-value=2.2e-37 Score=270.46 Aligned_cols=116 Identities=35% Similarity=0.644 Sum_probs=105.9
Q ss_pred Ccchhhhhhhh-hcCCCCeeEEeeeCccccccceEEEeeccCccCCCCCceeeecccccccCCCCCCccEEEEEecCCcc
Q 025743 10 SEKSTFVKQAI-KIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEI 88 (248)
Q Consensus 10 s~~~v~~rk~v-KIGrPgYKVtKvrDpeT~q~gLlfqV~YPei~~g~~Pr~RfMSayEQkvE~pdk~~QYLl~AaEPYEt 88 (248)
+++-+++|+.+ ++|+|+|||.++++++.+..||.|||+|++++...+|++||||+|||++|..|++|||||||||||||
T Consensus 105 qQkiieaKqSlk~~GiP~ykv~~~~epk~G~~Gl~iqvnY~Dd~a~~~P~yRivs~lEq~ve~~d~~f~yLV~a~ePyEn 184 (222)
T COG5246 105 QQKIIEAKQSLKRSGIPSYKVRSLVEPKGGRRGLGIQVNYEDDLAEEMPQYRIVSSLEQNVEEYDESFRYLVFACEPYEN 184 (222)
T ss_pred HHHHHHHHHHHHhcCCCceeEEEeecCCCCceeeEEEEeccchhhccCcceehhhhhhhcchhhcccceEEEEEeccccc
Confidence 34456666555 77899999999999999999999999999998889999999999999999999999999999999999
Q ss_pred ceeeecCcccccCCCcceeeecCCCCeEEEEEeeecCCC
Q 025743 89 IAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPV 127 (248)
Q Consensus 89 IaFKIPn~EIDk~~~k~wt~WD~dtK~F~LQf~Fk~e~~ 127 (248)
|||||++.|||.. +.|++||.+|++|+|||||+.-+.
T Consensus 185 Iafk~~~~ei~f~--s~~~~wDa~~~tYt~qFff~~a~~ 221 (222)
T COG5246 185 IAFKFENKEIDFL--SIYEDWDAETGTYTLQFFFLEAGP 221 (222)
T ss_pred eeeecCCCccchh--hhcccccccCceEEEEEeeecccC
Confidence 9999999999976 477899999999999999987543
No 3
>PF09732 CactinC_cactus: Cactus-binding C-terminus of cactin protein; InterPro: IPR019134 This entry represents the C-terminal 200 residues of the cactin protein which is necessary for the association of cactin with IkappaB-cactus, as one of the intracellular members of the Rel complex. The Rel (NF-kappaB) pathway is conserved in invertebrates and vertebrates. In mammals, it controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development and in the establishment of dorsal-ventral polarity in the early embryo []. Most members of the family also have the conserved mid region of cactin (IPR018816 from INTERPRO) further upstream.
Probab=99.76 E-value=1.6e-18 Score=143.27 Aligned_cols=84 Identities=31% Similarity=0.450 Sum_probs=73.1
Q ss_pred ccccccceEEEeeccCccC-CCCCceeeecccccccCCCCCCccEEEEE-ecCCccceeeecCcccccCCC-cceeeecC
Q 025743 35 PETKQRSLLFQIEYPEIED-LSKPRHRFMSSFEQRVQPFDKRYQYLMFA-AEPYEIIAFKVPSTEIDKSTP-KFFSHWDP 111 (248)
Q Consensus 35 peT~q~gLlfqV~YPei~~-g~~Pr~RfMSayEQkvE~pdk~~QYLl~A-aEPYEtIaFKIPn~EIDk~~~-k~wt~WD~ 111 (248)
|-...+|++|+|.||++.+ +..|+||||+ + ..++++++|+|+ ++|||+|||||.|+|+|.+.+ .|+++||.
T Consensus 36 PPK~vqGYkFnIfYPdL~d~~~~P~y~i~~-----~-~~~~~~~~L~F~AgpPYeDIAFkIvnrEWd~s~k~Gfr~~Fd~ 109 (125)
T PF09732_consen 36 PPKIVQGYKFNIFYPDLIDKSKTPRYRIEP-----D-EDNPDFCILRFHAGPPYEDIAFKIVNREWDYSHKRGFRCSFDR 109 (125)
T ss_pred CCceeeeeEEEEECCcccCCCCCCcEEEEE-----C-CCCCCEEEEEEeCCCCCcCEEEEEecCeeecCCCCCceEEeeC
Confidence 4455789999999999965 6789999999 2 238999999995 699999999999999999987 78999986
Q ss_pred CCCeEEEEEeeecCC
Q 025743 112 DSKMFTLQLYFKSKP 126 (248)
Q Consensus 112 dtK~F~LQf~Fk~e~ 126 (248)
++|.|+|+||..+
T Consensus 110 --gilqL~F~FKr~~ 122 (125)
T PF09732_consen 110 --GILQLYFNFKRYR 122 (125)
T ss_pred --CEEEEEEEEEhhh
Confidence 6999999999754
No 4
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=1.3e-08 Score=104.70 Aligned_cols=36 Identities=44% Similarity=0.898 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025743 182 ANGPRPMPPGGAPPAPPPPPGGSGTMANFTPGTQVGRPPTM 222 (248)
Q Consensus 182 ~~~p~p~~~~g~p~~ppppp~~~~~~~~f~~~~~~~~~~~~ 222 (248)
|++|+|++++|+.++|||||.+ +|-+|.+||++++|
T Consensus 568 G~PPpPppppg~~gppPPPpp~-----g~~Gg~ppPP~~gm 603 (1102)
T KOG1924|consen 568 GGPPPPPPPPGGGGPPPPPPPG-----GFLGGPPPPPPPGM 603 (1102)
T ss_pred CCCCccCCCCCCCCCCCcCCCC-----CCCCCCCCCCCCCc
Confidence 3445555555555555554444 45567666666554
No 5
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.61 E-value=1.6e-07 Score=96.80 Aligned_cols=13 Identities=77% Similarity=1.901 Sum_probs=6.8
Q ss_pred CCCCCCCCCCCCC
Q 025743 191 GGAPPAPPPPPGG 203 (248)
Q Consensus 191 ~g~p~~ppppp~~ 203 (248)
.|+||+|||++|+
T Consensus 567 aG~PPpPppppg~ 579 (1102)
T KOG1924|consen 567 AGGPPPPPPPPGG 579 (1102)
T ss_pred cCCCCccCCCCCC
Confidence 3555555555554
No 6
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=97.70 E-value=0.00057 Score=68.27 Aligned_cols=43 Identities=28% Similarity=0.488 Sum_probs=33.4
Q ss_pred ecCCCCeEEEEEeeec-CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025743 109 WDPDSKMFTLQLYFKS-KPVEGNKPQAAPAANGAVAPPPPPPPQ 151 (248)
Q Consensus 109 WD~dtK~F~LQf~Fk~-e~~ea~k~~~~~~~~~~~~pppp~pp~ 151 (248)
-|+||+.|.+-|.-|. .+.+++++.++.-++....|+||++|+
T Consensus 284 ~~~~t~~fi~~fi~k~~~~~~Sv~~~~~~lp~q~~~P~PPP~Ps 327 (569)
T KOG3671|consen 284 TERDTMKFIYDFIQKNPNGLPSVGQSAAELPRQKKRPPPPPPPS 327 (569)
T ss_pred cchhhccccccchhcCCCCCcccccchhhcccccCCCCCcCCcc
Confidence 4889999999999998 899999997666666666665555443
No 7
>KOG2370 consensus Cactin [Signal transduction mechanisms]
Probab=97.43 E-value=9e-05 Score=73.75 Aligned_cols=78 Identities=26% Similarity=0.371 Sum_probs=58.4
Q ss_pred ccceEEEeeccCc-cCCCCCceeeecccccccCCCCCCccE-EEEEecCCccceeeecCcccccCC--CcceeeecCCCC
Q 025743 39 QRSLLFQIEYPEI-EDLSKPRHRFMSSFEQRVQPFDKRYQY-LMFAAEPYEIIAFKVPSTEIDKST--PKFFSHWDPDSK 114 (248)
Q Consensus 39 q~gLlfqV~YPei-~~g~~Pr~RfMSayEQkvE~pdk~~QY-Ll~AaEPYEtIaFKIPn~EIDk~~--~k~wt~WD~dtK 114 (248)
.+|.-|.|-||+. +.+..|.|||-++-.. .++-- -..|.+|||.|||||=|+|-+.+. |..|+| ++.
T Consensus 538 VQGYkFNIFYPDLidk~~aP~y~ie~~~d~------~d~ciIRF~aGpPYeDIAFkIVnkeWeyshKrGfKcqF---~ng 608 (623)
T KOG2370|consen 538 VQGYKFNIFYPDLIDKGRAPTYRIERCRDK------NDFCIIRFHAGPPYEDIAFKIVNKEWEYSHKRGFKCQF---DNG 608 (623)
T ss_pred hcceeecccchhhhccccCCeeeeeecCCC------CceEEEEeccCCcchhhhhhhhcchhhhhhhcCcccee---eCC
Confidence 4799999999987 5568999988665432 13332 345899999999999999887644 444554 568
Q ss_pred eEEEEEeeecC
Q 025743 115 MFTLQLYFKSK 125 (248)
Q Consensus 115 ~F~LQf~Fk~e 125 (248)
+|.|-|+||.-
T Consensus 609 vlqL~F~FKk~ 619 (623)
T KOG2370|consen 609 VLQLWFRFKKY 619 (623)
T ss_pred eeeeeehhhhh
Confidence 89999999864
No 8
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=94.85 E-value=0.62 Score=49.34 Aligned_cols=15 Identities=13% Similarity=0.406 Sum_probs=12.1
Q ss_pred cceeeecCCCCeEEE
Q 025743 104 KFFSHWDPDSKMFTL 118 (248)
Q Consensus 104 k~wt~WD~dtK~F~L 118 (248)
.|++|||.++.+-|+
T Consensus 500 e~k~~wD~~lGVt~I 514 (894)
T KOG0132|consen 500 EYKDYWDVELGVTYI 514 (894)
T ss_pred hhhhhhhcccCeeEe
Confidence 588899998887764
No 9
>PF06346 Drf_FH1: Formin Homology Region 1; InterPro: IPR009408 This domain is found in some of the Diaphanous related formins (Drfs) []. It consists of low complexity repeats of around 12 residues.
Probab=82.32 E-value=10 Score=33.23 Aligned_cols=11 Identities=73% Similarity=1.721 Sum_probs=4.8
Q ss_pred CCCCCCCCCCC
Q 025743 221 TMPPPPPQGYG 231 (248)
Q Consensus 221 ~~~~~p~~g~~ 231 (248)
++.++++-||+
T Consensus 142 g~ppP~p~g~g 152 (160)
T PF06346_consen 142 GMPPPPPFGFG 152 (160)
T ss_pred CCCCCCccccC
Confidence 33444444544
No 10
>PHA03378 EBNA-3B; Provisional
Probab=69.64 E-value=1e+02 Score=33.47 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=6.5
Q ss_pred CCCCCCCCCCCCC
Q 025743 224 PPPPQGYGGQQMP 236 (248)
Q Consensus 224 ~~p~~g~~~~~~~ 236 (248)
++++||-+.-++.
T Consensus 777 ~~pPq~~P~~~Qr 789 (991)
T PHA03378 777 QPPPQAPPAPQQR 789 (991)
T ss_pred CCCCCCCCccccC
Confidence 4455655544444
No 11
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=57.31 E-value=2.3e+02 Score=29.11 Aligned_cols=11 Identities=27% Similarity=0.498 Sum_probs=5.0
Q ss_pred CCCeeEEeeeC
Q 025743 24 RPGYRVTKQFD 34 (248)
Q Consensus 24 rPgYKVtKvrD 34 (248)
|+.-|+.|.++
T Consensus 189 r~~k~~Rk~~~ 199 (518)
T KOG1830|consen 189 RPNKKPRKPHN 199 (518)
T ss_pred CccccccCCCC
Confidence 44444444443
No 12
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=56.56 E-value=1e+02 Score=29.60 Aligned_cols=12 Identities=17% Similarity=0.183 Sum_probs=5.7
Q ss_pred hhhcCCCCeeEE
Q 025743 19 AIKIGRPGYRVT 30 (248)
Q Consensus 19 ~vKIGrPgYKVt 30 (248)
..|.-+|-|-.+
T Consensus 5 kkk~~kpwcwyc 16 (341)
T KOG2893|consen 5 KKKVDKPWCWYC 16 (341)
T ss_pred ccccCCceeeec
Confidence 334445555444
No 13
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=46.65 E-value=1.5e+02 Score=32.21 Aligned_cols=12 Identities=25% Similarity=0.257 Sum_probs=5.5
Q ss_pred CCCeEEEEEeee
Q 025743 112 DSKMFTLQLYFK 123 (248)
Q Consensus 112 dtK~F~LQf~Fk 123 (248)
++|.=-+|..-+
T Consensus 241 ~~ki~emq~~ss 252 (830)
T KOG1923|consen 241 ETKIGEMQLASS 252 (830)
T ss_pred cCCccccccccc
Confidence 344444554433
No 14
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=45.88 E-value=99 Score=27.91 Aligned_cols=69 Identities=22% Similarity=0.376 Sum_probs=41.8
Q ss_pred cccccceEEEeeccCccCCCCCceeeecccccccCCCCCCccEEEEEecC-CccceeeecCcccccCCCcceeeecCCCC
Q 025743 36 ETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEP-YEIIAFKVPSTEIDKSTPKFFSHWDPDSK 114 (248)
Q Consensus 36 eT~q~gLlfqV~YPei~~g~~Pr~RfMSayEQkvE~pdk~~QYLl~AaEP-YEtIaFKIPn~EIDk~~~k~wt~WD~dtK 114 (248)
.+.-..|.++|+.|.+.. ++..++.| .-.+|++.++- .-...+.+|- .||.+.++ --||.+++
T Consensus 257 ~~~p~~lvv~i~LP~~~s--------~~~i~LdV-----~~~~l~l~~~~~~y~L~l~LP~-~V~~~~~~--Akf~~~~~ 320 (328)
T PF08190_consen 257 SGSPEELVVEIELPGVES--------ASDIDLDV-----SEDRLSLSSPKPKYRLDLPLPY-PVDEDNGK--AKFDKKTK 320 (328)
T ss_pred CCCCceEEEEEECCCcCc--------cceeEEEE-----eCCEEEEEeCCCceEEEccCCC-cccCCCce--EEEccCCC
Confidence 344567888988887632 24444433 23356665555 2234455554 55655444 68999999
Q ss_pred eEEEEE
Q 025743 115 MFTLQL 120 (248)
Q Consensus 115 ~F~LQf 120 (248)
+.+|.+
T Consensus 321 ~L~vtl 326 (328)
T PF08190_consen 321 TLTVTL 326 (328)
T ss_pred EEEEEE
Confidence 999876
No 15
>PF09034 TRADD_N: TRADD, N-terminal domain; InterPro: IPR009095 TRADD is a signalling adaptor protein involved in tumour necrosis factor-receptor I (TNFR1)-associated apoptosis and cell survival. The decision between apoptosis and cell survival involves the interplay between two sequential signalling complexes. The plasma membrane-bound complex I is comprised of TNFR1, TRADD, the kinase RIP1, and TRAF2, which together mediate the activation of NF-kappaB. Subsequently, complex II is formed in the cytoplasm, where TRADD and RIP1 associate with FADD and caspase-8. If NF-kappaB is activated by complex I, then complex II will associate with the caspase-8 inhibitor FLIP(L) and the cell survives, while the failure to activate NF-kappaB leads to apoptosis []. The TRADD C-terminal death domain is responsible for its association with TNFR1, and with the death-domain proteins FADD and RIP1, which promote apoptosis. The TRADD N-terminal domain binds TRAF2 and promotes TRAF2 recruitment to TNFR1, thereby mediating the activation of NK-kappaB and JNK/AP1, which promote cell survival []. The N-terminal TRADD domain is composed of an alpha-beta sandwich, where the beta strands form an antiparallel beta-sheet.; GO: 0004871 signal transducer activity, 0006917 induction of apoptosis, 0043123 positive regulation of I-kappaB kinase/NF-kappaB cascade, 0005737 cytoplasm; PDB: 1F3V_A 1F2H_A.
Probab=43.72 E-value=6.1 Score=32.93 Aligned_cols=37 Identities=27% Similarity=0.606 Sum_probs=29.4
Q ss_pred CCCCeeEEeeeCccccccceEEEeeccCccCCCCCceeeecccc
Q 025743 23 GRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFE 66 (248)
Q Consensus 23 GrPgYKVtKvrDpeT~q~gLlfqV~YPei~~g~~Pr~RfMSayE 66 (248)
|..||.|-||+|.+-. |.+||.| .+..+..||..+|-
T Consensus 5 ~~~g~~iLKiH~sdpq---LiVqlkF----~~~~~C~rFL~sYr 41 (111)
T PF09034_consen 5 SPDGYQILKIHDSDPQ---LIVQLKF----CGREPCRRFLRSYR 41 (111)
T ss_dssp -TTTEEEEEEEEETTC---EEEEEEE----ESHHHHHHHHHHHH
T ss_pred CcchhheeeeecCCCe---eEEEEEE----cCchhHHHHHHHHh
Confidence 4679999999987654 8889999 44678999998884
No 16
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=38.72 E-value=3.1e+02 Score=27.71 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=18.5
Q ss_pred eecccccccCCCCCCccEEEEEecC
Q 025743 61 FMSSFEQRVQPFDKRYQYLMFAAEP 85 (248)
Q Consensus 61 fMSayEQkvE~pdk~~QYLl~AaEP 85 (248)
=|.-||.+..--.|.|..|++-.|=
T Consensus 111 dmKFFENR~NGQSKG~AL~~~~SdA 135 (498)
T KOG4849|consen 111 DMKFFENRTNGQSKGYALLVLNSDA 135 (498)
T ss_pred hhhhhhcccCCcccceEEEEecchH
Confidence 4667888877778888877776553
No 17
>PRK03999 translation initiation factor IF-5A; Provisional
Probab=38.43 E-value=47 Score=27.62 Aligned_cols=86 Identities=16% Similarity=0.004 Sum_probs=45.0
Q ss_pred CCCcchhhhhhhhhcCCCCeeEEeeeCccccc-cceEEEeeccCccCCCCCceeeeccc--ccccCCCCCCccEEEEE--
Q 025743 8 PTSEKSTFVKQAIKIGRPGYRVTKQFDPETKQ-RSLLFQIEYPEIEDLSKPRHRFMSSF--EQRVQPFDKRYQYLMFA-- 82 (248)
Q Consensus 8 p~s~~~v~~rk~vKIGrPgYKVtKvrDpeT~q-~gLlfqV~YPei~~g~~Pr~RfMSay--EQkvE~pdk~~QYLl~A-- 82 (248)
+.+..++.+-..|.+..=-|+|.++-.-.+++ .+-.+++.+-++..|.+=-.||-|.- |. ..-..+.+|||-+.
T Consensus 5 ~~~~~~lrkG~~i~~~g~p~~V~~~~~~kpGkhg~a~vr~k~knL~tG~~~e~~~~s~d~~e~-~~ve~~~~qylY~dg~ 83 (129)
T PRK03999 5 QVEVGELKEGSYVVIDGEPCKIVEISKSKPGKHGSAKARIVAIGIFDGQKRSLVQPVDAKVEV-PIIEKKTGQVLSIMGD 83 (129)
T ss_pred cccHHHccCCCEEEECCEEEEEEEEEeecCCCCCcEEEEEEEEECCCCCEEEEEecCCCceee-eeEEeEEEEEEEecCC
Confidence 34444444444555544457887776656666 55677777777776654334444332 11 11123444444332
Q ss_pred ------ecCCccceeeec
Q 025743 83 ------AEPYEIIAFKVP 94 (248)
Q Consensus 83 ------aEPYEtIaFKIP 94 (248)
-|=||.|.++.+
T Consensus 84 ~~~fMd~eTyeq~~i~~~ 101 (129)
T PRK03999 84 VVQLMDLETYETFEIPIP 101 (129)
T ss_pred EEEEecCCCceEEEecCC
Confidence 256777755544
No 18
>PHA03378 EBNA-3B; Provisional
Probab=34.00 E-value=4.3e+02 Score=28.98 Aligned_cols=8 Identities=50% Similarity=1.053 Sum_probs=3.2
Q ss_pred CCCCCCCC
Q 025743 138 ANGAVAPP 145 (248)
Q Consensus 138 ~~~~~~pp 145 (248)
|.++.-||
T Consensus 690 ap~~~~pP 697 (991)
T PHA03378 690 APGTMQPP 697 (991)
T ss_pred CccccCCC
Confidence 34444333
No 19
>PHA02919 host-range protein; Provisional
Probab=33.69 E-value=1e+02 Score=26.99 Aligned_cols=60 Identities=17% Similarity=0.373 Sum_probs=46.9
Q ss_pred CCCeeEE-eeeCccccccceEEEeeccCccCCCCCceeeecccccccCCCCCCccEEEEEec
Q 025743 24 RPGYRVT-KQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAE 84 (248)
Q Consensus 24 rPgYKVt-KvrDpeT~q~gLlfqV~YPei~~g~~Pr~RfMSayEQkvE~pdk~~QYLl~AaE 84 (248)
.=||++- |+.+-.+-..-++++.|+.||++ ++|.+=....+--+++.-++.+-+++-.+.
T Consensus 27 sYGC~i~lk~~~~K~~~fi~vLePdWseId~-vKpi~m~~Ng~~v~v~~v~~s~~~vIYsa~ 87 (150)
T PHA02919 27 NYGCKLKIISNDYKKLKFRFIIRPDWSEIDE-VKGLTVFANNYAVKVNKVDDTFYYVIYEAV 87 (150)
T ss_pred ccceEEEEEECCceEEEEEEEEccChhhhhc-ccceEEEECCEEEEEEEeccceEEEEEEEE
Confidence 4477775 55666677778889999999954 799998888888888888888877777764
No 20
>PHA03247 large tegument protein UL36; Provisional
Probab=32.64 E-value=8.5e+02 Score=30.72 Aligned_cols=9 Identities=0% Similarity=-0.282 Sum_probs=5.4
Q ss_pred cceeeecCC
Q 025743 104 KFFSHWDPD 112 (248)
Q Consensus 104 k~wt~WD~d 112 (248)
+-|-+|=+|
T Consensus 2534 ~~w~~glEe 2542 (3151)
T PHA03247 2534 LTWIRGLEE 2542 (3151)
T ss_pred hhhhhhhhh
Confidence 346667665
No 21
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=32.32 E-value=47 Score=28.54 Aligned_cols=59 Identities=15% Similarity=0.299 Sum_probs=44.1
Q ss_pred ceeeecccccccCCCCCCccEEEEEecCCccc------------eeeecCc----------------ccccCCCcceeee
Q 025743 58 RHRFMSSFEQRVQPFDKRYQYLMFAAEPYEII------------AFKVPST----------------EIDKSTPKFFSHW 109 (248)
Q Consensus 58 r~RfMSayEQkvE~pdk~~QYLl~AaEPYEtI------------aFKIPn~----------------EIDk~~~k~wt~W 109 (248)
+.|++|+-|- ++..+.+-+.+-+|..|-.+. ++.||+. -|+.-+|..|-||
T Consensus 2 kIRVVSsk~E-I~~Ln~nE~~VHlAFRPSN~Dif~Lv~~CP~lk~iqiP~SY~~t~Sksi~mfL~mqgI~LleGDVwGHR 80 (131)
T PF08004_consen 2 KIRVVSSKDE-IETLNPNEEIVHLAFRPSNKDIFSLVERCPNLKAIQIPPSYYKTLSKSIKMFLEMQGIELLEGDVWGHR 80 (131)
T ss_pred eeEEecCHHH-HhhcCCCceEEEEEecCcchHHHHHHHhCCCCeEEeCChHHHHHHhHHHHHHHHhcCceeecccccccc
Confidence 5799999887 888889999999999887654 5566662 2555668999999
Q ss_pred cCCCCeEE
Q 025743 110 DPDSKMFT 117 (248)
Q Consensus 110 D~dtK~F~ 117 (248)
---..-|.
T Consensus 81 KDinEYy~ 88 (131)
T PF08004_consen 81 KDINEYYE 88 (131)
T ss_pred CCCccccc
Confidence 66555443
No 22
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]
Probab=31.58 E-value=63 Score=26.99 Aligned_cols=102 Identities=13% Similarity=0.052 Sum_probs=63.3
Q ss_pred hhhhcCCCCeeEEeeeCccccccceEEEeeccCccCCCCCceeeecccccc-cCCCCCCccEEEEE--------ecCCcc
Q 025743 18 QAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQR-VQPFDKRYQYLMFA--------AEPYEI 88 (248)
Q Consensus 18 k~vKIGrPgYKVtKvrDpeT~q~gLlfqV~YPei~~g~~Pr~RfMSayEQk-vE~pdk~~QYLl~A--------aEPYEt 88 (248)
.+|.|+-=-|+|.+.....+++.+=.++|.+-.+..|.+=-.||-++-... ..-.+++.|||-+. -|=||.
T Consensus 13 ~~i~~dg~~~~V~~~~~~KpGKg~a~vrvk~k~l~tG~~~e~~f~~~~kve~a~ie~~~~q~lY~dg~~~~FMD~etyeq 92 (131)
T COG0231 13 LYIVIDGEPYVVVEISHVKPGKGGAFVRVKLKNLFTGKKVEKTFKADDKVEVAIVERKTAQYLYIDGDFYVFMDLETYEQ 92 (131)
T ss_pred CEEEECCeEEEEEEEEEccCCCCCcEEEEEEEEccCCCEEEEEEcCCCEEEEeEEeeeeEEEEEcCCCeEEEccCCCceE
Confidence 455565567999998888899888899999988877755555555532221 22355666666444 588898
Q ss_pred ceeeecCcc--ccc-CCCcceeeecCCCCeEEEE
Q 025743 89 IAFKVPSTE--IDK-STPKFFSHWDPDSKMFTLQ 119 (248)
Q Consensus 89 IaFKIPn~E--IDk-~~~k~wt~WD~dtK~F~LQ 119 (248)
+.+..+..+ ... .+|.-++.|--+.+...++
T Consensus 93 ~~v~~~~~~d~~~~l~eg~~v~v~~~~g~~i~v~ 126 (131)
T COG0231 93 YELPKDQIGDAAKFLKEGMEVEVLLYNGEPIAVE 126 (131)
T ss_pred EEecchhhhhHHHhcCCCCEEEEEEECCEEEEEE
Confidence 888876531 111 2344455555444444444
No 23
>PF10974 DUF2804: Protein of unknown function (DUF2804); InterPro: IPR021243 This is a family of proteins with unknown function.
Probab=29.57 E-value=59 Score=30.46 Aligned_cols=43 Identities=19% Similarity=0.353 Sum_probs=33.6
Q ss_pred CCCccEEEEEecCCccceeeecCcccccCCCcceeeecCCCCeEEE
Q 025743 73 DKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTL 118 (248)
Q Consensus 73 dk~~QYLl~AaEPYEtIaFKIPn~EIDk~~~k~wt~WD~dtK~F~L 118 (248)
-|.|+|..|..+-| -|++.| -.|+....-|++.||.++++++-
T Consensus 39 ~K~w~y~~i~~~~~-~~~~av--~dl~y~~~~~v~~~d~~t~~~~~ 81 (333)
T PF10974_consen 39 IKEWDYYGITSDDF-IIGLAV--ADLGYLGSAFVYLYDRKTGEFFE 81 (333)
T ss_pred eeeEEEEEEECCCE-EEEEEE--EcCCceeEEEEEEEECCCCeEEE
Confidence 47899999999886 566666 55666666789999999998653
No 24
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=29.11 E-value=41 Score=28.31 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=13.9
Q ss_pred cccccCCCcceeeecCCCCeEEE
Q 025743 96 TEIDKSTPKFFSHWDPDSKMFTL 118 (248)
Q Consensus 96 ~EIDk~~~k~wt~WD~dtK~F~L 118 (248)
.+||.+.+-..-|||+|++..||
T Consensus 5 ~~lD~s~g~L~P~yD~dt~llyl 27 (136)
T PF08954_consen 5 QELDTSSGVLMPFYDEDTNLLYL 27 (136)
T ss_dssp EE----SS-EEEEE-TTT-EEEE
T ss_pred EeccCCCceeEeeEcCCCCEEEE
Confidence 57899999999999999998775
No 25
>COG0774 LpxC UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell envelope biogenesis, outer membrane]
Probab=27.96 E-value=57 Score=31.41 Aligned_cols=88 Identities=15% Similarity=0.330 Sum_probs=50.1
Q ss_pred cCCC-CeeEEeeeCccc-----cccceEEEeeccCccCCCCCceeeecccccc-cCCCCCCccEEEE-------------
Q 025743 22 IGRP-GYRVTKQFDPET-----KQRSLLFQIEYPEIEDLSKPRHRFMSSFEQR-VQPFDKRYQYLMF------------- 81 (248)
Q Consensus 22 IGrP-gYKVtKvrDpeT-----~q~gLlfqV~YPei~~g~~Pr~RfMSayEQk-vE~pdk~~QYLl~------------- 81 (248)
+|+. +-+|..|-+--. +-.-++|||+=+||--..=.-..|+-.+++. ++.-+...+|+.|
T Consensus 66 L~~~~~~~I~TVEHLmaAl~~lgIDN~~Iev~g~EiPImDGSa~~Fv~li~~aGi~~q~a~~~~irI~~pV~v~~gdk~~ 145 (300)
T COG0774 66 LGNDHGVRISTVEHLMAALAGLGIDNLIIEVDGPEIPIMDGSAAPFVELIDEAGIKEQNAKKKFIRIKKPVRVEDGDKWA 145 (300)
T ss_pred ecCCCCcEEeeHHHHHHHHHhCCCccEEEEecCCcCcccCCchHHHHHHHHHhCchhhccccceEEEeccEEEecCCEEE
Confidence 4555 777777655432 2235789999999821111122355555554 4455666666654
Q ss_pred EecCCccceeeecCcccccCC---CcceeeecCC
Q 025743 82 AAEPYEIIAFKVPSTEIDKST---PKFFSHWDPD 112 (248)
Q Consensus 82 AaEPYEtIaFKIPn~EIDk~~---~k~wt~WD~d 112 (248)
+++||..-.|.+ +||.+. |+.|..|.-|
T Consensus 146 ~~~P~dg~r~~~---~IdF~~p~Ig~~~q~~~~~ 176 (300)
T COG0774 146 EFTPYDGFRLSY---TIDFDHPAIGRQWQSFEFD 176 (300)
T ss_pred EEecCCCcEEEE---EEecCCcccCCcceeEEEe
Confidence 478886544433 566654 4656666544
No 26
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=26.24 E-value=5.6e+02 Score=28.24 Aligned_cols=25 Identities=12% Similarity=-0.118 Sum_probs=14.3
Q ss_pred eecCCCCeEEEEEeeecCCCCCCCC
Q 025743 108 HWDPDSKMFTLQLYFKSKPVEGNKP 132 (248)
Q Consensus 108 ~WD~dtK~F~LQf~Fk~e~~ea~k~ 132 (248)
-||.||..-..-...+.+..+++..
T Consensus 531 m~d~~t~~p~~kgi~~~Ep~~ev~~ 555 (894)
T KOG0132|consen 531 MLDGTTGPPEWKGIAKDEPDIEVGE 555 (894)
T ss_pred eecCccCCcccccccccCcchhhhh
Confidence 5788877665555555444444333
No 27
>PF13584 BatD: Oxygen tolerance
Probab=25.88 E-value=1.4e+02 Score=28.81 Aligned_cols=33 Identities=24% Similarity=0.635 Sum_probs=20.2
Q ss_pred CccEEEEEecCCccceeeecCcccccCCCcceeeecCCCCeEEE
Q 025743 75 RYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTL 118 (248)
Q Consensus 75 ~~QYLl~AaEPYEtIaFKIPn~EIDk~~~k~wt~WD~dtK~F~L 118 (248)
.+.|.+++-+.= .|.||.. .+.|||.++++|..
T Consensus 339 ~~~~~~ip~~~G---~~~lP~i--------~~~~fdp~~~~y~~ 371 (484)
T PF13584_consen 339 TFKYTLIPKKPG---DFTLPAI--------RFSWFDPQTGKYET 371 (484)
T ss_pred EEEEEEEeCCCC---eEEcCCe--------EEEEEcCCCCeEEE
Confidence 345555554322 4455542 35799999999874
No 28
>PF11281 DUF3083: Protein of unknown function (DUF3083); InterPro: IPR021433 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=25.63 E-value=71 Score=30.98 Aligned_cols=31 Identities=23% Similarity=0.537 Sum_probs=24.9
Q ss_pred ccCCCcceeeecCCCCeEEEEEeeecCCCCC
Q 025743 99 DKSTPKFFSHWDPDSKMFTLQLYFKSKPVEG 129 (248)
Q Consensus 99 Dk~~~k~wt~WD~dtK~F~LQf~Fk~e~~ea 129 (248)
+.++..+.+|||.|.-+=+|+|.|.++..+.
T Consensus 243 ~~~~~q~~~~w~~~kLVet~~fvi~A~~~d~ 273 (316)
T PF11281_consen 243 NAEEPQFICHWDADKLVETVHFVIVAGKQDK 273 (316)
T ss_pred ccCCcceeeeeccceeeeeEEEEEEecCccc
Confidence 3344679999999999999999998765543
No 29
>TIGR00037 eIF_5A translation initiation factor eIF-5A. Observed in eukaryotes and archaea.
Probab=25.38 E-value=57 Score=27.12 Aligned_cols=75 Identities=15% Similarity=0.110 Sum_probs=49.4
Q ss_pred hhhhcCCCCeeEEeeeCccccc-cceEEEeeccCccCCCCCceeeecccccccCC---CCCCccEE--------EEEecC
Q 025743 18 QAIKIGRPGYRVTKQFDPETKQ-RSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQP---FDKRYQYL--------MFAAEP 85 (248)
Q Consensus 18 k~vKIGrPgYKVtKvrDpeT~q-~gLlfqV~YPei~~g~~Pr~RfMSayEQkvE~---pdk~~QYL--------l~AaEP 85 (248)
..|.+.-=-|+|+++-....++ .+-.+++..-++..|.+=-+||-|+- . +|. ..+.+||| ++--|=
T Consensus 16 ~~i~~~g~p~~V~e~~~~kpGkhG~A~vr~k~knl~tG~~~e~~f~s~~-~-ve~~~ve~~~~qylY~dg~~~~fMd~et 93 (130)
T TIGR00037 16 GYVVIDGRPCKIVDISTSKPGKHGHAKARVVAIGIFTGKKLEFVSPSTS-K-VEVPIVDRREYQVLAIMGGMVQLMDLDT 93 (130)
T ss_pred CEEEECCEEEEEEEEEecCCCCCCcEEEEEEEEECCCCCEEEEEECCCC-E-EEEeEEEEEEEEEEEecCCEEEEEcCCC
Confidence 4455544569999988888887 67788999988887755555554432 1 232 23445544 444578
Q ss_pred Cccceeeec
Q 025743 86 YEIIAFKVP 94 (248)
Q Consensus 86 YEtIaFKIP 94 (248)
||.+.++++
T Consensus 94 yeq~~i~~~ 102 (130)
T TIGR00037 94 YETDELPIP 102 (130)
T ss_pred cEEEEecCC
Confidence 888888776
No 30
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=23.30 E-value=5.4e+02 Score=24.82 Aligned_cols=9 Identities=56% Similarity=0.918 Sum_probs=3.4
Q ss_pred CCCCCCCCC
Q 025743 190 PGGAPPAPP 198 (248)
Q Consensus 190 ~~g~p~~pp 198 (248)
++|++++=+
T Consensus 177 ~~g~pg~~~ 185 (341)
T KOG2893|consen 177 PPGMPGAYP 185 (341)
T ss_pred CCCCCCCCC
Confidence 334433333
No 31
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=21.57 E-value=7.2 Score=36.15 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=31.6
Q ss_pred ceEEEeeccCccCCCCCceeeecccccccCCCCCCccEEE
Q 025743 41 SLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLM 80 (248)
Q Consensus 41 gLlfqV~YPei~~g~~Pr~RfMSayEQkvE~pdk~~QYLl 80 (248)
.-||.|.|-.+....+--+||+|+.|||.|..+.-.|.-|
T Consensus 43 RNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~qv~l 82 (268)
T COG5040 43 RNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTHQVEL 82 (268)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChhHHHH
Confidence 3467788888766678899999999999998887766433
No 32
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=20.65 E-value=58 Score=24.14 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=18.4
Q ss_pred cccCCCcceeeecCCCCeEEEEEe
Q 025743 98 IDKSTPKFFSHWDPDSKMFTLQLY 121 (248)
Q Consensus 98 IDk~~~k~wt~WD~dtK~F~LQf~ 121 (248)
|...+-.+-.+||.+|+++.|..+
T Consensus 28 l~~eDP~l~~~~d~et~e~~l~g~ 51 (75)
T PF14492_consen 28 LSEEDPSLRVERDEETGELILSGM 51 (75)
T ss_dssp HHHH-TTSEEEEETTTSEEEEEES
T ss_pred HHhcCCeEEEEEcchhceEEEEEC
Confidence 444455778899999999999876
No 33
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=20.26 E-value=30 Score=37.15 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=27.3
Q ss_pred hhcCCCCeeEEeeeCccccccceEEEeeccCccCCCCCceeeecccccc
Q 025743 20 IKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQR 68 (248)
Q Consensus 20 vKIGrPgYKVtKvrDpeT~q~gLlfqV~YPei~~g~~Pr~RfMSayEQk 68 (248)
-+|++||++|.+++ .+-|.|+.-||. ||.+.||..
T Consensus 860 ~~~~~pGp~V~~~~-------n~Pf~v~l~dI~-------~FF~dY~~~ 894 (944)
T KOG4307|consen 860 ELIKSPGPRVLSCN-------NFPFDVTLEDIV-------EFFNDYEPD 894 (944)
T ss_pred HhcCCCCCeEEEec-------CCCccccHHHHH-------HHhcccccC
Confidence 38999999999987 466777777763 578888874
No 34
>PHA02854 putative host range protein; Provisional
Probab=20.11 E-value=3.1e+02 Score=24.78 Aligned_cols=59 Identities=14% Similarity=0.204 Sum_probs=43.2
Q ss_pred CCCeeEE-eeeCccccccceEEEeeccCccCCCCCceeeecccccccCCCCCCccEEEEEe
Q 025743 24 RPGYRVT-KQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAA 83 (248)
Q Consensus 24 rPgYKVt-KvrDpeT~q~gLlfqV~YPei~~g~~Pr~RfMSayEQkvE~pdk~~QYLl~Aa 83 (248)
.=||++- |+.+..+-..-+++++++.||.+ ++|.+=.+...--++|--.+.+-+++-+|
T Consensus 28 SYGC~I~Lk~~~~K~~~~i~Il~pdwseI~e-vKPi~m~~Ng~~vdv~lv~~s~~~~IYsa 87 (178)
T PHA02854 28 SYGCFINLKVKEEKKFNIIFVLKPDWSEIDS-VKPIRMEVNNNSVDVEKVSESLYEVVYSA 87 (178)
T ss_pred ccCEEEEEEeCCccEEEEEEEEecChhhhhc-ccceEEEECCeEeEEEEeeeeeEEEEEEE
Confidence 3477775 66667777788889999999954 79988888888777776666665555444
Done!