Query 025743
Match_columns 248
No_of_seqs 158 out of 218
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 16:38:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dgw_C PRE-mRNA-splicing facto 100.0 1.4E-50 4.9E-55 355.5 8.7 106 18-124 94-223 (231)
2 3eud_A Protein SHQ1; CS domain 56.3 38 0.0013 27.2 7.1 79 21-121 14-93 (115)
3 2k8q_A Protein SHQ1; beta-sand 52.1 34 0.0012 28.0 6.3 67 40-122 13-80 (134)
4 3cpf_A Eukaryotic translation 44.5 2.9 9.8E-05 33.8 -1.3 78 19-98 17-106 (138)
5 3hks_A EIF-5A-2, eukaryotic tr 44.3 5.7 0.00019 33.5 0.5 78 19-98 39-130 (167)
6 1iz6_A Initiation factor 5A; S 42.4 14 0.00047 29.8 2.5 82 19-100 17-108 (138)
7 2eif_A IF-5A, protein (eukaryo 42.3 30 0.001 27.6 4.5 77 18-94 20-106 (136)
8 1f3v_A Tumor necrosis factor r 32.8 8.6 0.00029 33.1 -0.2 37 23-66 55-91 (179)
9 1x6o_A Eukaryotic initiation f 31.9 12 0.0004 31.7 0.5 75 20-96 42-135 (174)
10 3ach_A Beta-1,4-endoglucanase; 30.9 1.3E+02 0.0044 26.2 6.8 90 35-131 56-169 (203)
11 1bkb_A Translation initiation 29.0 50 0.0017 26.3 3.7 93 3-95 3-105 (136)
12 3a5z_B EF-P, elongation factor 28.0 28 0.00096 29.6 2.2 83 11-93 9-100 (191)
No 1
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-50 Score=355.46 Aligned_cols=106 Identities=25% Similarity=0.368 Sum_probs=96.9
Q ss_pred hhhhcCCCCeeEEeeeCccccccceEEEeeccC-c---------cCCCCCceeeecccccccCCCCCCccEEEEEecCCc
Q 025743 18 QAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPE-I---------EDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYE 87 (248)
Q Consensus 18 k~vKIGrPgYKVtKvrDpeT~q~gLlfqV~YPe-i---------~~g~~Pr~RfMSayEQkvE~pdk~~QYLl~AaEPYE 87 (248)
....|||||||||||||+||+|+||||||+|++ | +++++|||||||+|||++|.+ ++||||||||||||
T Consensus 94 ~~~~IGRPGYKVTKVRDPETgQ~GLLFQVdYPEeIk~~~~~~~~~egi~PrhRIMSAyEQrVE~P-Kd~QYLVIAAEPYE 172 (231)
T 4dgw_C 94 XXXXXXXXXXXXXXXXXXXXGSVGMAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQ-KGKKFLVIAYEPFE 172 (231)
T ss_dssp HSCCCCCCCCBCCCEECCBCCBCCEEEEEECCCSSSTTSCCSCSSTTCCCEEEEEETTCCSSCCC-CCCEEEEEECSSSC
T ss_pred cccccccccccccccccccCCCeeEEEEEECChhhhhcccccccCCCCCcCEEEECHHHhcccCC-CCCEEEEEEeCCCC
Confidence 345799999999999999999999999999999 6 778999999999999999988 99999999999999
Q ss_pred cceeeecCcccccCC--------------CcceeeecCCCCeEEEEEeeec
Q 025743 88 IIAFKVPSTEIDKST--------------PKFFSHWDPDSKMFTLQLYFKS 124 (248)
Q Consensus 88 tIaFKIPn~EIDk~~--------------~k~wt~WD~dtK~F~LQf~Fk~ 124 (248)
||||||||+|||+.+ |+||||||+|+|+|+||||||.
T Consensus 173 TIAFKIPNrEIDk~e~~~~~~~~~svDElgKfwTyWD~DsK~FyLQffFK~ 223 (231)
T 4dgw_C 173 NIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYYVQFFFKQ 223 (231)
T ss_dssp CBCCEECSSCSSCCSCCSCCCCCCSSCHHHHHTEEEETTTTEEEEC-----
T ss_pred CceeEcCChhhccccccccccccccccccCCEEEEecCCCCEEEEEEEEee
Confidence 999999999999988 8899999999999999999993
No 2
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=56.32 E-value=38 Score=27.19 Aligned_cols=79 Identities=20% Similarity=0.473 Sum_probs=53.2
Q ss_pred hcCCCCeeEEeeeCccccccceEEEeeccCccCCCCCceee-ecccccccCCCCCCccEEEEEecCCccceeeecCcccc
Q 025743 21 KIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRF-MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEID 99 (248)
Q Consensus 21 KIGrPgYKVtKvrDpeT~q~gLlfqV~YPei~~g~~Pr~Rf-MSayEQkvE~pdk~~QYLl~AaEPYEtIaFKIPn~EID 99 (248)
|.=.|.|+|+- | ..-|.|.|..|-+ || .+..|-.+ +-.-++|-|.|| =..+.+|.+-+|
T Consensus 14 ~~iTP~F~itQ--D----defv~I~I~~p~i--------r~~a~~~ei~v-----d~~~F~F~~~PY-yLRL~lP~~vve 73 (115)
T 3eud_A 14 KMITPRFSITQ--D----EEFIFLKIFISNI--------RFSAVGLEIII-----QENMIIFHLSPY-YLRLRFPHELID 73 (115)
T ss_dssp CCBCCCEEEEE--C----SSEEEEEEECCSC--------CCCSSSCEEEE-----ETTEEEEEETTE-EEEEECSSCEEC
T ss_pred CEeCCcEEEEE--C----CCEEEEEEEcCce--------ecccCccEEEE-----eCCEEEEecCCe-EEEEecCcceec
Confidence 44478888872 1 2357777777655 22 24455533 233588999999 567888887776
Q ss_pred cCCCcceeeecCCCCeEEEEEe
Q 025743 100 KSTPKFFSHWDPDSKMFTLQLY 121 (248)
Q Consensus 100 k~~~k~wt~WD~dtK~F~LQf~ 121 (248)
.+.+ -..||.|+..|+|.|-
T Consensus 74 d~~~--~A~YD~d~g~~~v~lp 93 (115)
T 3eud_A 74 DERS--TAQYDSKDECINVKVA 93 (115)
T ss_dssp STTC--EEEEETTTTEEEEEEE
T ss_pred CCCc--ceEEeCCCcEEEEEEc
Confidence 5543 3589999999999985
No 3
>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}
Probab=52.11 E-value=34 Score=27.95 Aligned_cols=67 Identities=19% Similarity=0.430 Sum_probs=47.0
Q ss_pred cceEEEeeccCccCCCCCceee-ecccccccCCCCCCccEEEEEecCCccceeeecCcccccCCCcceeeecCCCCeEEE
Q 025743 40 RSLLFQIEYPEIEDLSKPRHRF-MSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTL 118 (248)
Q Consensus 40 ~gLlfqV~YPei~~g~~Pr~Rf-MSayEQkvE~pdk~~QYLl~AaEPYEtIaFKIPn~EIDk~~~k~wt~WD~dtK~F~L 118 (248)
.-|.|.|..|.+ || +|..|..++ -.-+.|-|.|| =..+.+|..-+|.+.++ ..||.|+..|+|
T Consensus 13 e~viV~Ik~P~~--------~~~~sdiei~v~-----~~~F~F~~~PY-yLRL~LP~~V~e~~~~k--A~YD~d~~~~~V 76 (134)
T 2k8q_A 13 EFIFLKIFISNI--------RFSAVGLEIIIQ-----ENMIIFHLSPY-YLRLRFPHELIDDERST--AQYDSKDECINV 76 (134)
T ss_dssp SEEEEEEECCSS--------CCCSSSCCCEEC-----SSSEEECSSSS-CEEECCSSCEECCSSCE--EEEETTTTEEEE
T ss_pred CEEEEEEEcCcc--------ccCccccEEEEe-----CCEEEEecCCe-EEEecCCCeeecCCCcc--eeEeccCCEEEE
Confidence 357788777665 34 456666543 22478889999 56677888766655444 789999999999
Q ss_pred EEee
Q 025743 119 QLYF 122 (248)
Q Consensus 119 Qf~F 122 (248)
.|-=
T Consensus 77 tLpK 80 (134)
T 2k8q_A 77 KVAK 80 (134)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9863
No 4
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=44.47 E-value=2.9 Score=33.79 Aligned_cols=78 Identities=8% Similarity=0.033 Sum_probs=51.2
Q ss_pred hhhcCCCCeeEEeeeCcccccc-ceEEEeeccCccCCCCCceeeecccccccC---CCCCCccEEEE--------EecCC
Q 025743 19 AIKIGRPGYRVTKQFDPETKQR-SLLFQIEYPEIEDLSKPRHRFMSSFEQRVQ---PFDKRYQYLMF--------AAEPY 86 (248)
Q Consensus 19 ~vKIGrPgYKVtKvrDpeT~q~-gLlfqV~YPei~~g~~Pr~RfMSayEQkvE---~pdk~~QYLl~--------AaEPY 86 (248)
.|.|.-=-|+|++.-...+++. +-.+++..-+|..|.+=-.+|-|+-. +| -..+.+|||-+ --|-|
T Consensus 17 ~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~TG~~~e~tf~s~~k--ve~~~v~~~~~qyly~dg~~~~fMD~ety 94 (138)
T 3cpf_A 17 FVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHN--MDVPNIKRNDFQLIGIQDGYLSLLQDSGE 94 (138)
T ss_dssp EEEETTEEEEEEEEEEECC----CCEEEEEEEETTTCCEEEEEEETTSE--EEEECCEEEEEEEEEEETTEEEEECTTSC
T ss_pred EEEECCEEEEEEEEEeccCCCCccEEEEEEEEECCCCCEEEEEeCCCCE--EEeeEEEEEEEEEEEecCCEEEEEcCCCC
Confidence 3444444699999988888886 77888888888777554455554322 33 24456776654 47889
Q ss_pred ccceeeecCccc
Q 025743 87 EIIAFKVPSTEI 98 (248)
Q Consensus 87 EtIaFKIPn~EI 98 (248)
|.+.++|+...|
T Consensus 95 eq~~l~l~~~~l 106 (138)
T 3cpf_A 95 VREDLRLPEGDL 106 (138)
T ss_dssp EECCSBCCSHHH
T ss_pred eEeeecCCHHHH
Confidence 999999987654
No 5
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=44.26 E-value=5.7 Score=33.49 Aligned_cols=78 Identities=15% Similarity=0.064 Sum_probs=54.1
Q ss_pred hhhcCCCCeeEEeeeCccccc-cceEEEeeccCccCCCCCceeeecccccccC---CCCCCccEEEE-E--------ecC
Q 025743 19 AIKIGRPGYRVTKQFDPETKQ-RSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQ---PFDKRYQYLMF-A--------AEP 85 (248)
Q Consensus 19 ~vKIGrPgYKVtKvrDpeT~q-~gLlfqV~YPei~~g~~Pr~RfMSayEQkvE---~pdk~~QYLl~-A--------aEP 85 (248)
.|.|.-=-|+|++.-...+++ -.-.+++..-+|..|.+=-.+|-|+-. +| -..+.+|||-+ . -|=
T Consensus 39 ~I~idG~P~~Vve~~~~KpGKhG~A~vr~k~knl~TGk~~E~tf~s~~k--ve~~~ver~~~QyLY~d~d~~~~fMD~et 116 (167)
T 3hks_A 39 HIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHN--CDVPHVNRVDYQLIDITEDGFVSLLTDSG 116 (167)
T ss_dssp EEEETTEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEETTSE--EEEECCEEEEEEEEEECTTSBEEEECTTS
T ss_pred EEEECCEEEEEEEEEEeCCCCCCceEEEEEEEEcCCCCEEEEEEcCCCE--EEeeeEEEEEEEEEEECCCCEEEEEcCCC
Confidence 444543459999998888888 457788888888777555555655532 33 23467777766 2 379
Q ss_pred CccceeeecCc-cc
Q 025743 86 YEIIAFKVPST-EI 98 (248)
Q Consensus 86 YEtIaFKIPn~-EI 98 (248)
||.+.++||.. +|
T Consensus 117 yeQ~~l~lp~~~~l 130 (167)
T 3hks_A 117 GTKDDLKLPTDDGL 130 (167)
T ss_dssp CEECCCBCCSCHHH
T ss_pred ceEEEEecCchHHH
Confidence 99999999987 44
No 6
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=42.38 E-value=14 Score=29.82 Aligned_cols=82 Identities=20% Similarity=0.042 Sum_probs=53.4
Q ss_pred hhhcCCCCeeEEeeeCccccc-cceEEEeeccCccCCCCCceeeecccccc-cCCCCCCccEEEE--------EecCCcc
Q 025743 19 AIKIGRPGYRVTKQFDPETKQ-RSLLFQIEYPEIEDLSKPRHRFMSSFEQR-VQPFDKRYQYLMF--------AAEPYEI 88 (248)
Q Consensus 19 ~vKIGrPgYKVtKvrDpeT~q-~gLlfqV~YPei~~g~~Pr~RfMSayEQk-vE~pdk~~QYLl~--------AaEPYEt 88 (248)
.|.|..=-|+|++.-.-.+++ -+-.+++.+-+|..|.+=-.+|-|+--.. ..-..+.+|||-+ --|=||.
T Consensus 17 ~i~~~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qylY~dg~~~~fMD~etyeq 96 (138)
T 1iz6_A 17 YIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAITPDTVQIMDMETYET 96 (138)
T ss_dssp EEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEECSSEEEEECTTTCCE
T ss_pred EEEECCEEEEEEEEEeecCCCCCceEEEEEEEECCCCCEEEEEecCCCEEeeceEEEEEEEEEEeCCCEEEEEeCCCCce
Confidence 445544569999998888887 56667888888877755444555442211 1234455555544 4678999
Q ss_pred ceeeecCccccc
Q 025743 89 IAFKVPSTEIDK 100 (248)
Q Consensus 89 IaFKIPn~EIDk 100 (248)
|.++++...|..
T Consensus 97 ~~l~~~~~~lgd 108 (138)
T 1iz6_A 97 FEVPIDTGVADE 108 (138)
T ss_dssp EEEEHHHHBCGG
T ss_pred EEeeCCHHHHHH
Confidence 999888766543
No 7
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=42.27 E-value=30 Score=27.65 Aligned_cols=77 Identities=13% Similarity=0.040 Sum_probs=47.9
Q ss_pred hhhhcCCCCeeEEeeeCccccc-cceEEEeeccCccCCCCCceeeecccccc-cCCCCCCccEEE--------EEecCCc
Q 025743 18 QAIKIGRPGYRVTKQFDPETKQ-RSLLFQIEYPEIEDLSKPRHRFMSSFEQR-VQPFDKRYQYLM--------FAAEPYE 87 (248)
Q Consensus 18 k~vKIGrPgYKVtKvrDpeT~q-~gLlfqV~YPei~~g~~Pr~RfMSayEQk-vE~pdk~~QYLl--------~AaEPYE 87 (248)
..|.+..=-|+|++...-.+++ -+-.+++.+-++..|.+=-.+|-|+-... ..-..+.+|||- +--|=||
T Consensus 20 ~~I~~~g~p~~V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qyly~dg~~~~fMD~etye 99 (136)
T 2eif_A 20 QYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDRRKGQVLAIMGDMVQIMDLQTYE 99 (136)
T ss_dssp SEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEECEEEEEEEEEEEETTEEEEEETTTCC
T ss_pred CEEEECCEEEEEEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCCCEeccccEeeeEEEEEEecCCEEEEEeCCCce
Confidence 3445544468899888888887 55667888888877755444555532211 223444555543 3467888
Q ss_pred cceeeec
Q 025743 88 IIAFKVP 94 (248)
Q Consensus 88 tIaFKIP 94 (248)
.+.+..+
T Consensus 100 q~~l~~~ 106 (136)
T 2eif_A 100 TLELPIP 106 (136)
T ss_dssp EEEEECC
T ss_pred EEEecCC
Confidence 8888776
No 8
>1f3v_A Tumor necrosis factor receptor type 1 associated death domain protein; A-B sandwich, apoptosis; 2.00A {Homo sapiens} SCOP: d.58.22.1 PDB: 1f2h_A
Probab=32.85 E-value=8.6 Score=33.07 Aligned_cols=37 Identities=16% Similarity=0.356 Sum_probs=30.4
Q ss_pred CCCCeeEEeeeCccccccceEEEeeccCccCCCCCceeeecccc
Q 025743 23 GRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFE 66 (248)
Q Consensus 23 GrPgYKVtKvrDpeT~q~gLlfqV~YPei~~g~~Pr~RfMSayE 66 (248)
|.-+|.|-||+|.+-. |.+||.| -+..+..||..+|-
T Consensus 55 ~~d~~qiLKiH~sdpq---LiVqlkF----cg~~~C~RFL~sYr 91 (179)
T 1f3v_A 55 SPDVLQMLKIHRSDPQ---LIVQLRF----CGRQPCGRFLRAYR 91 (179)
T ss_dssp CTTTEEEEEEEECSSS---EEEEEEE----ESHHHHHHHHHHHH
T ss_pred CcchhhheeeecCCCe---eEEEEEE----cCcHHHHHHHHHhh
Confidence 3779999999986654 8889988 55688999998884
No 9
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=31.88 E-value=12 Score=31.73 Aligned_cols=75 Identities=15% Similarity=0.071 Sum_probs=46.8
Q ss_pred hhcCCCCeeEEeeeCcccccc-ceEEEeeccCccCCCCCceeeecccccccC---CCCCCccEEEEE-------------
Q 025743 20 IKIGRPGYRVTKQFDPETKQR-SLLFQIEYPEIEDLSKPRHRFMSSFEQRVQ---PFDKRYQYLMFA------------- 82 (248)
Q Consensus 20 vKIGrPgYKVtKvrDpeT~q~-gLlfqV~YPei~~g~~Pr~RfMSayEQkvE---~pdk~~QYLl~A------------- 82 (248)
|.|.-=-|+|+++-...+++. +-.+++..-+|..|.+=-.+|-|+-. +| -..+.+|||-+.
T Consensus 42 I~idG~p~~Vve~~~~KpGKgG~A~vr~k~kni~TG~k~E~tf~s~~k--ve~~~Ver~~~QyLY~dgd~~~~~~g~~~f 119 (174)
T 1x6o_A 42 VCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTHN--VEVPFVKTYTYSVLDIQANEDPSLPAHLSL 119 (174)
T ss_dssp EEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETTSE--EEEECCEEEEEEEEEEECCSSTTSCCEEEE
T ss_pred EEECCEEEEEEEEEecCCCCCCceEEEEEEEECCCCCEEEEEeCCCCE--EEeeEEEEEEEEEEEecCCcccccccEEEE
Confidence 344334699999888888886 66678888888777554455555421 22 234456666553
Q ss_pred --ecCCccceeeecCc
Q 025743 83 --AEPYEIIAFKVPST 96 (248)
Q Consensus 83 --aEPYEtIaFKIPn~ 96 (248)
-|-||.+.++++..
T Consensus 120 MD~etyeq~~l~~p~~ 135 (174)
T 1x6o_A 120 MDDEGESREDLDMPPD 135 (174)
T ss_dssp ECTTSCEECCCBCCSC
T ss_pred EcCCCceEEEeeCCch
Confidence 45789988888765
No 10
>3ach_A Beta-1,4-endoglucanase; beta-jellyroll, cellulose-binding domain, hydrolase; HET: BGC; 1.40A {Clostridium josui} PDB: 3acf_A* 3acg_A* 3aci_A*
Probab=30.95 E-value=1.3e+02 Score=26.25 Aligned_cols=90 Identities=21% Similarity=0.379 Sum_probs=47.1
Q ss_pred ccccccceEEEeeccCcc--CC--CCCceeeecccccccCCCCCCccEEEEE--------ecCCc--cceeeecCc----
Q 025743 35 PETKQRSLLFQIEYPEIE--DL--SKPRHRFMSSFEQRVQPFDKRYQYLMFA--------AEPYE--IIAFKVPST---- 96 (248)
Q Consensus 35 peT~q~gLlfqV~YPei~--~g--~~Pr~RfMSayEQkvE~pdk~~QYLl~A--------aEPYE--tIaFKIPn~---- 96 (248)
...+...|.++|.|||.+ ++ .-||.+|-. ++.---+++||.|- .|--- +++|.=|+.
T Consensus 56 eANgS~AlSwe~~YPEvKpsD~WAsApRl~l~~-----~~~tRg~n~YlaFDfYl~P~rAskG~i~I~laf~PP~lGyWA 130 (203)
T 3ach_A 56 DANESKAISWEVKYPEVKPVDGWASAPRIMLGN-----VNTTRGNNKYLTFDFYLKPTQASKGSLTISLAFAPPSLGFWA 130 (203)
T ss_dssp EETTEEEEEEEEECCSSCCSSTTTTSCEEEETT-----CCBCCTTCSEEEEEEEEEEEECCSSEEEEEEEEECGGGTTCE
T ss_pred ecCCcceeEEEEeCCcccCCcccccCceeEEec-----ccceeccCcEEEEEEEECccccCCceEEEEEEecCCCCccce
Confidence 345667899999999984 23 566664432 22233455676552 22222 223333332
Q ss_pred ------ccccCCCcceeeecCCCCeEEEEEeeecCCCCCCC
Q 025743 97 ------EIDKSTPKFFSHWDPDSKMFTLQLYFKSKPVEGNK 131 (248)
Q Consensus 97 ------EIDk~~~k~wt~WD~dtK~F~LQf~Fk~e~~ea~k 131 (248)
+||..+=. +-=--+...|.+|+.|..++.+..|
T Consensus 131 qa~~~f~IdL~~L~--~a~~t~DgLYh~~v~~dl~ki~~~K 169 (203)
T 3ach_A 131 QATGDVNIPLSSLS--KMKKTTDGLYHFQVKYDLDKINDGK 169 (203)
T ss_dssp EBSCCEEEEGGGGG--GSCCCTTSCEEEEEEEETTCBGGGC
T ss_pred eCcceecccHHHhh--hcccCCCccEEEEEEEehhhccCCc
Confidence 23332100 0011234679999999877765433
No 11
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=28.98 E-value=50 Score=26.26 Aligned_cols=93 Identities=14% Similarity=-0.011 Sum_probs=57.3
Q ss_pred cCCCCCCCcchhhhhhhhhcCCCCeeEEeeeCcccccc-ceEEEeeccCccCCCCCceeeecccccc-cCCCCCCccEEE
Q 025743 3 LLSPSPTSEKSTFVKQAIKIGRPGYRVTKQFDPETKQR-SLLFQIEYPEIEDLSKPRHRFMSSFEQR-VQPFDKRYQYLM 80 (248)
Q Consensus 3 ~~~~sp~s~~~v~~rk~vKIGrPgYKVtKvrDpeT~q~-gLlfqV~YPei~~g~~Pr~RfMSayEQk-vE~pdk~~QYLl 80 (248)
||+.=+.+.+.+.+-..|.|..=-|+|++.-+..+++. +-.+++.+-+|..|.+=-.+|-|+--.. ..-..+.+|||-
T Consensus 3 ~~~t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~kve~~~ve~~~~qylY 82 (136)
T 1bkb_A 3 VMSTKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFTAQILS 82 (136)
T ss_dssp CCCCEEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEEEEEEE
T ss_pred ceEEEEEEHHHccCCCEEEECCEEEEEEEEEEecCCCCCceEEEEEEEECCCCCeEEEEEcCCCEeeeceEEEEEEEEEE
Confidence 45422233333333344555555799999988889987 7888999988877755555555542211 223445556554
Q ss_pred E--------EecCCccceeeecC
Q 025743 81 F--------AAEPYEIIAFKVPS 95 (248)
Q Consensus 81 ~--------AaEPYEtIaFKIPn 95 (248)
+ --|=||.|.+..+.
T Consensus 83 ~dg~~~~fMD~etyeq~~l~~~~ 105 (136)
T 1bkb_A 83 VSGDVIQLMDMRDYKTIEVPMKY 105 (136)
T ss_dssp ECSSEEEEEETTTCCEEEEEGGG
T ss_pred ecCCEEEEEeCCCCeEEEecccc
Confidence 4 46778988877665
No 12
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}
Probab=28.00 E-value=28 Score=29.61 Aligned_cols=83 Identities=12% Similarity=0.114 Sum_probs=54.3
Q ss_pred cchhhhhhhhhcCCCCeeEEeeeCccccccceEEEeeccCccCCCCCceeeecccccc-cCCCCCCccEEEEE-------
Q 025743 11 EKSTFVKQAIKIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFEQR-VQPFDKRYQYLMFA------- 82 (248)
Q Consensus 11 ~~~v~~rk~vKIGrPgYKVtKvrDpeT~q~gLlfqV~YPei~~g~~Pr~RfMSayEQk-vE~pdk~~QYLl~A------- 82 (248)
.+.+.+-..|.+.-=-|+|++.-+-..++-+-.+++.+-++..|.+=-.||-|+-... ..-..+++|||-+.
T Consensus 9 a~dlk~G~~I~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dgd~~~FM 88 (191)
T 3a5z_B 9 SNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEFWHFM 88 (191)
T ss_dssp STTCCTTCEEEETTEEEEEEEEEEECCTTCCCEEEEEEEEGGGTEEEEEEEETTCEEEECCEEEECCEEEEECSSCEEEE
T ss_pred HHHCCCCCEEEECCEEEEEEEEEEEcCCCCcEEEEEEEEECCCCCEEEEEECCCCEEEeeEEEEEEEEEEEeCCCEEEEe
Confidence 3333334455665557999999998999988899999999887755555666543221 22345667766554
Q ss_pred -ecCCccceeee
Q 025743 83 -AEPYEIIAFKV 93 (248)
Q Consensus 83 -aEPYEtIaFKI 93 (248)
-|=||.|.+..
T Consensus 89 D~etyeQ~~l~~ 100 (191)
T 3a5z_B 89 NNETFEQLSADA 100 (191)
T ss_dssp CTTTCCEEEECH
T ss_pred eCCCCeEEEccH
Confidence 56678775543
Done!