Query 025743
Match_columns 248
No_of_seqs 158 out of 218
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 16:38:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025743.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025743hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1f3va_ d.58.22.1 (A:) TRADD, 33.4 3.9 0.00028 32.6 -0.2 37 23-66 48-84 (158)
2 d2gysa4 b.1.2.1 (A:317-416) Co 31.1 17 0.0012 23.7 3.0 36 77-112 62-97 (100)
3 d1kshb_ b.1.18.8 (B:) GMP-PDE 23.2 38 0.0027 26.4 4.0 27 26-54 13-41 (149)
4 d1erna2 b.1.2.1 (A:117-221) Er 22.8 36 0.0026 22.2 3.4 38 75-112 62-99 (105)
5 d1r75a_ b.134.1.1 (A:) Unnamed 21.2 27 0.002 26.0 2.7 31 87-123 20-50 (121)
6 d2fe0a1 b.134.1.1 (A:1-131) Sm 19.2 32 0.0023 26.1 2.7 21 102-123 44-64 (131)
7 d2fbea1 b.29.1.22 (A:1-188) Si 18.5 75 0.0055 24.1 5.0 27 21-47 2-28 (188)
8 d1xmwa2 b.1.1.4 (A:113-178) CD 16.1 1.2E+02 0.0086 20.5 4.9 19 103-123 47-65 (66)
9 d1lf6a2 b.30.5.5 (A:11-287) Ba 13.9 64 0.0046 27.1 3.6 62 21-84 104-173 (277)
10 d1jb7a2 b.40.4.3 (A:205-328) T 13.8 54 0.0039 24.8 2.8 52 40-98 50-101 (124)
No 1
>d1f3va_ d.58.22.1 (A:) TRADD, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=33.44 E-value=3.9 Score=32.63 Aligned_cols=37 Identities=16% Similarity=0.356 Sum_probs=30.2
Q ss_pred CCCCeeEEeeeCccccccceEEEeeccCccCCCCCceeeecccc
Q 025743 23 GRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFMSSFE 66 (248)
Q Consensus 23 GrPgYKVtKvrDpeT~q~gLlfqV~YPei~~g~~Pr~RfMSayE 66 (248)
|..+|.|-||+|.+-. |.+|+.| -+..+..||..+|-
T Consensus 48 ~~d~~eiLKiH~sdpq---LiVqLkF----c~~~~C~RFL~sYr 84 (158)
T d1f3va_ 48 SPDVLQMLKIHRSDPQ---LIVQLRF----CGRQPCGRFLRAYR 84 (158)
T ss_dssp CTTTEEEEEEEECSSS---EEEEEEE----ESHHHHHHHHHHHH
T ss_pred CcchhHhhheecCCCe---eEEEEEe----cCcHHHHHHHHHHh
Confidence 3779999999987654 8889988 44678999998884
No 2
>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.08 E-value=17 Score=23.71 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=20.7
Q ss_pred cEEEEEecCCccceeeecCcccccCCCcceeeecCC
Q 025743 77 QYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD 112 (248)
Q Consensus 77 QYLl~AaEPYEtIaFKIPn~EIDk~~~k~wt~WD~d 112 (248)
.|.|---+|...=.|+|=++..+-....+|+.|-+.
T Consensus 62 ~~~l~~L~p~t~Y~~rVRa~~~~g~~~g~WSeWS~~ 97 (100)
T d2gysa4 62 SMALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEA 97 (100)
T ss_dssp EEECCCCCSSCCCEEEEEEEECCTTCCBCCCCCCCC
T ss_pred EEEeCCCCCCCeEEEEEEEEECCCCCCCCccCCCCC
Confidence 444444556555566665444332234689999765
No 3
>d1kshb_ b.1.18.8 (B:) GMP-PDE delta {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.17 E-value=38 Score=26.41 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=19.0
Q ss_pred CeeEE--eeeCccccccceEEEeeccCccCC
Q 025743 26 GYRVT--KQFDPETKQRSLLFQIEYPEIEDL 54 (248)
Q Consensus 26 gYKVt--KvrDpeT~q~gLlfqV~YPei~~g 54 (248)
|++++ ++||.||| .+|||+.=.....+
T Consensus 13 Gf~~~~~~iRD~etG--~Vlfe~~~d~~~~~ 41 (149)
T d1kshb_ 13 GFKLNWMNLRDAETG--KILWQGTEDLSVPG 41 (149)
T ss_dssp TEEEEEEEEEETTTT--EEEEEECSCTTCTT
T ss_pred CceEEEEEEEeCCCC--eEEEEecCCCCCCC
Confidence 56666 78999999 58888754444333
No 4
>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.84 E-value=36 Score=22.19 Aligned_cols=38 Identities=18% Similarity=0.272 Sum_probs=23.8
Q ss_pred CccEEEEEecCCccceeeecCcccccCCCcceeeecCC
Q 025743 75 RYQYLMFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPD 112 (248)
Q Consensus 75 ~~QYLl~AaEPYEtIaFKIPn~EIDk~~~k~wt~WD~d 112 (248)
..+|+|...++..+-.|+|=++.-......+|+.|-..
T Consensus 62 ~t~~~i~~L~p~t~Y~~rVRar~~~~~~~G~WSeWS~~ 99 (105)
T d1erna2 62 RTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSAWSEP 99 (105)
T ss_dssp CCEEEECSCCSSCEEEEEEEEEECSSSCCBCCCCCCCC
T ss_pred ccEEEEeCCCCCcEEEEEEEEEECCCCCCCCCCCCCCC
Confidence 34567767777777777776553222223589999654
No 5
>d1r75a_ b.134.1.1 (A:) Unnamed hypothetical protein {Leishmania major [TaxId: 5664]}
Probab=21.20 E-value=27 Score=26.04 Aligned_cols=31 Identities=16% Similarity=0.412 Sum_probs=19.1
Q ss_pred ccceeeecCcccccCCCcceeeecCCCCeEEEEEeee
Q 025743 87 EIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFK 123 (248)
Q Consensus 87 EtIaFKIPn~EIDk~~~k~wt~WD~dtK~F~LQf~Fk 123 (248)
..+.|+| || .+++.|.+.| ||+.|.+++.+.
T Consensus 20 nGlLfRi----V~-~~~~~WaFYN-DT~~y~m~V~~~ 50 (121)
T d1r75a_ 20 SNILYRI----AD-TEARRWAFYN-DSKELIIHVAVL 50 (121)
T ss_dssp TTSEEEE----EE-TTTTEEEEEE-CCSSEEEEEEEE
T ss_pred CcEEEEE----Ee-CCCCEEEEEe-CCCcEEEEEEEE
Confidence 5566666 33 3456776665 778777666654
No 6
>d2fe0a1 b.134.1.1 (A:1-131) Small myristoylated protein 1, Smp-1 {Leishmania major [TaxId: 5664]}
Probab=19.19 E-value=32 Score=26.06 Aligned_cols=21 Identities=10% Similarity=0.352 Sum_probs=12.7
Q ss_pred CCcceeeecCCCCeEEEEEeee
Q 025743 102 TPKFFSHWDPDSKMFTLQLYFK 123 (248)
Q Consensus 102 ~~k~wt~WD~dtK~F~LQf~Fk 123 (248)
+++.|-+. .||++|.+++.+.
T Consensus 44 ~~~~WaFY-NDT~~y~m~V~v~ 64 (131)
T d2fe0a1 44 KKKQWAYY-NDTTQYEMHVLVT 64 (131)
T ss_dssp TTTEEEEE-ECCSSEEEEEEEE
T ss_pred CCCEEEEE-eCCCCEEEEEEEE
Confidence 34556555 4777777665554
No 7
>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.54 E-value=75 Score=24.09 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=22.9
Q ss_pred hcCCCCeeEEeeeCccccccceEEEee
Q 025743 21 KIGRPGYRVTKQFDPETKQRSLLFQIE 47 (248)
Q Consensus 21 KIGrPgYKVtKvrDpeT~q~gLlfqV~ 47 (248)
+.|-+.|+|.-..|++|-...|++.-|
T Consensus 2 ~~~~~ky~vdvtLDp~TAh~~L~lS~d 28 (188)
T d2fbea1 2 PLGSPEFQVDMTFDVDTANNYLIISED 28 (188)
T ss_dssp CBSCGGGBCCCCEETTTCCTTEEECTT
T ss_pred CCCCcceeEeeEcCCCCCCCCEEEccC
Confidence 457899999999999999988888644
No 8
>d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment {Sheep (Ovis aries) [TaxId: 9940]}
Probab=16.14 E-value=1.2e+02 Score=20.47 Aligned_cols=19 Identities=32% Similarity=0.639 Sum_probs=12.4
Q ss_pred CcceeeecCCCCeEEEEEeee
Q 025743 103 PKFFSHWDPDSKMFTLQLYFK 123 (248)
Q Consensus 103 ~k~wt~WD~dtK~F~LQf~Fk 123 (248)
|-||+. ..+|.-+||+||+
T Consensus 47 GiY~C~--~~~~~~~lQVyYR 65 (66)
T d1xmwa2 47 GMYQCG--ENAKSFTLQVYYR 65 (66)
T ss_dssp EEEECC--SSSCCCEEEEEEC
T ss_pred cceECC--CCCcceeEEEEEe
Confidence 445552 2246679999986
No 9
>d1lf6a2 b.30.5.5 (A:11-287) Bacterial glucoamylase, N-terminal domain {Thermoanaerobacterium thermosaccharolyticum [TaxId: 1517]}
Probab=13.95 E-value=64 Score=27.11 Aligned_cols=62 Identities=19% Similarity=0.324 Sum_probs=0.0
Q ss_pred hcCCCCeeEEeeeCccccccceEEEeeccCccCCCCCceeee--------cccccccCCCCCCccEEEEEec
Q 025743 21 KIGRPGYRVTKQFDPETKQRSLLFQIEYPEIEDLSKPRHRFM--------SSFEQRVQPFDKRYQYLMFAAE 84 (248)
Q Consensus 21 KIGrPgYKVtKvrDpeT~q~gLlfqV~YPei~~g~~Pr~RfM--------SayEQkvE~pdk~~QYLl~AaE 84 (248)
+-|| |+++|..=.+-.+..||++|.|--.+.++.++.=++ ++...+-..-|.+-.++|+|.+
T Consensus 104 ~~Gr--y~iek~i~tDP~rd~ll~~v~f~al~g~i~~~~lY~l~~Phl~n~G~~n~a~v~~~~~~~~L~A~~ 173 (277)
T d1lf6a2 104 KKGR--YRITKDIFTDVKRNSLIMKAKFEALEGSIHDYKLYLAYDPHIKNQGSYNEGYVIKANNNEMLMAKR 173 (277)
T ss_dssp TTSS--EEEEEEEEECSSSSEEEEEEEEEESSSCGGGCEEEEEEEECTTTBSSSEEEEEEEETTEEEEEEEE
T ss_pred CCCc--EEEEEEEECCCCCCEEEEEEEEEecCCCccceeEEEEecCcccCCCCCceEEEeccCCceEEEEcC
No 10
>d1jb7a2 b.40.4.3 (A:205-328) Telomere end binding protein alpha subunit {Oxytricha nova [TaxId: 200597]}
Probab=13.81 E-value=54 Score=24.77 Aligned_cols=52 Identities=17% Similarity=0.276 Sum_probs=36.5
Q ss_pred cceEEEeeccCccCCCCCceeeecccccccCCCCCCccEEEEEecCCccceeeecCccc
Q 025743 40 RSLLFQIEYPEIEDLSKPRHRFMSSFEQRVQPFDKRYQYLMFAAEPYEIIAFKVPSTEI 98 (248)
Q Consensus 40 ~gLlfqV~YPei~~g~~Pr~RfMSayEQkvE~pdk~~QYLl~AaEPYEtIaFKIPn~EI 98 (248)
.++++...||.+.+|..=|+|=.+.=|- ....+.|+++ .|.||---|.+..+
T Consensus 50 ~t~~~k~KFPhl~~G~vvRIRSat~det-----st~kk~L~lS--hySNImtF~s~Skl 101 (124)
T d1jb7a2 50 YTLSLKLKFPHVRTGEVVRIRSATYDET-----STQKKVLILS--HYSNIITFIQSSKL 101 (124)
T ss_dssp EEEEETTTCTTCCTTCEEEEEEEEECTT-----CCSSCEEEEE--EEEEEEEECTTCHH
T ss_pred ehhhhhhcCCccccCceEEEEeeecccc-----cccceeEEee--cccceeEEecHHHH
Confidence 4677788999998887666665554443 3345678887 79999877777543
Done!