Query 025744
Match_columns 248
No_of_seqs 92 out of 108
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 16:40:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025744.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025744hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z0t_A Putative uncharacterize 100.0 7.9E-42 2.7E-46 273.5 12.1 106 126-231 2-108 (109)
2 1xne_A Hypothetical protein PF 100.0 1.2E-41 4.1E-46 273.8 9.8 108 125-232 2-109 (113)
3 3iuw_A Activating signal coint 99.3 1.9E-12 6.4E-17 99.6 7.2 55 123-180 6-69 (83)
4 1te7_A Hypothetical UPF0267 pr 98.3 1.5E-06 5.1E-11 67.5 6.2 92 128-230 5-102 (103)
5 2kku_A Uncharacterized protein 95.8 0.058 2E-06 45.9 9.8 90 129-230 31-138 (161)
6 2dp9_A Hypothetical protein TT 89.9 0.61 2.1E-05 37.0 5.9 57 128-189 10-70 (124)
7 2qcp_X Cation efflux system pr 77.3 2 6.9E-05 31.7 3.4 51 117-167 12-63 (80)
8 2vb2_X Copper protein, cation 74.5 2.6 8.9E-05 31.7 3.4 51 117-167 20-71 (88)
9 2e5o_A Activating signal coint 63.7 4.3 0.00015 33.4 2.8 30 127-156 8-37 (154)
10 2l55_A SILB,silver efflux prot 60.4 7 0.00024 29.0 3.2 60 119-180 10-74 (82)
11 2vl6_A SSO MCM N-TER, minichro 55.1 12 0.00042 32.2 4.4 44 128-172 194-239 (268)
12 1vky_A S-adenosylmethionine:tR 53.6 16 0.00056 34.2 5.2 59 156-216 111-178 (347)
13 1dm9_A Hypothetical 15.5 KD pr 53.2 13 0.00043 29.6 3.8 52 137-189 29-87 (133)
14 1ltl_A DNA replication initiat 51.7 13 0.00044 32.5 4.0 44 128-172 181-226 (279)
15 4gop_B Putative uncharacterize 51.6 34 0.0012 26.6 6.1 51 139-189 59-123 (136)
16 1p9k_A ORF, hypothetical prote 45.9 7.7 0.00026 27.7 1.4 34 137-170 41-74 (79)
17 3kdf_D Replication protein A 3 45.0 39 0.0013 26.1 5.4 51 139-189 54-118 (132)
18 4i1k_A B3 domain-containing tr 40.9 36 0.0012 27.3 4.8 49 110-167 64-126 (146)
19 2k6p_A Uncharacterized protein 40.1 18 0.00061 26.2 2.6 40 137-177 21-63 (92)
20 4hci_A Cupredoxin 1; structura 38.3 14 0.00047 26.8 1.8 28 140-167 10-41 (100)
21 1o5u_A Novel thermotoga mariti 31.4 60 0.002 24.0 4.3 30 136-167 52-81 (101)
22 1bxv_A Plastocyanin; copper pr 31.3 30 0.001 23.9 2.5 14 154-167 19-32 (91)
23 2pyt_A Ethanolamine utilizatio 31.0 39 0.0013 26.2 3.3 35 130-167 72-106 (133)
24 1t62_A Conserved hypothetical 27.7 1E+02 0.0035 25.9 5.5 91 132-230 36-148 (166)
25 2pi2_A Replication protein A 3 26.5 1E+02 0.0035 26.7 5.6 48 139-186 94-155 (270)
26 3bcw_A Uncharacterized protein 26.4 73 0.0025 24.5 4.2 31 135-167 70-100 (123)
27 2db7_A Hairy/enhancer-OF-split 26.1 47 0.0016 23.8 2.8 31 14-51 24-54 (64)
28 3vab_A Diaminopimelate decarbo 24.2 1.3E+02 0.0043 27.8 6.0 37 155-191 380-438 (443)
29 1y3t_A Hypothetical protein YX 23.3 43 0.0015 28.5 2.5 52 136-191 242-303 (337)
30 3es4_A Uncharacterized protein 22.6 53 0.0018 25.8 2.7 28 138-167 66-93 (116)
31 1yy3_A S-adenosylmethionine:tR 22.5 1.1E+02 0.0039 28.5 5.3 58 156-216 104-175 (346)
32 4hik_A Protection of telomeres 22.5 44 0.0015 27.3 2.3 26 142-167 63-92 (143)
33 2gim_A Plastocyanin; beta shee 22.1 45 0.0015 23.8 2.1 15 153-167 19-33 (106)
34 4ham_A LMO2241 protein; struct 22.0 48 0.0017 25.3 2.4 20 67-86 14-33 (134)
35 1t2w_A Sortase; transpeptidase 21.9 1E+02 0.0035 24.1 4.3 27 155-181 72-101 (145)
36 3pt3_A E3 ubiquitin-protein li 21.7 19 0.00065 28.4 -0.0 23 63-85 93-115 (118)
37 3lwc_A Uncharacterized protein 21.3 20 0.00068 27.3 -0.0 33 132-167 58-90 (119)
38 2fqp_A Hypothetical protein BP 21.3 42 0.0014 23.6 1.8 30 136-167 42-72 (97)
39 3fcs_B Integrin beta-3; beta p 21.2 1.4E+02 0.0049 29.8 6.1 17 154-170 385-401 (690)
40 2cbp_A Cucumber basic protein; 20.7 47 0.0016 24.9 2.0 14 154-167 20-33 (96)
41 1f56_A Plantacyanin; cupredoxi 20.5 48 0.0017 24.6 2.0 14 154-167 15-28 (91)
42 1qhq_A Protein (auracyanin); e 20.4 52 0.0018 25.1 2.2 26 141-166 14-45 (140)
43 1c05_A Ribosomal protein S4 de 20.2 53 0.0018 26.7 2.3 33 136-168 70-102 (159)
No 1
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=100.00 E-value=7.9e-42 Score=273.49 Aligned_cols=106 Identities=42% Similarity=0.719 Sum_probs=103.5
Q ss_pred ceeeeccchhhHHHhcCCceEEEEccCccccCCCCCCEEEEcc-eEEEEEEEEeecCCHHHHHhhcCccccCCCCCCHHH
Q 025744 126 NFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNK-CLVLKVQDVHGYLSFSEMLQAESLAKVLPGIKTIDE 204 (248)
Q Consensus 126 ~heM~L~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~e-~l~v~V~~Vr~Y~SF~eLLe~E~l~kvlPg~~SiEE 204 (248)
.|+|+|+++||++|++|+||||||+||+||++|++||+|+||. ++.|+|++|++|+||++||+++|+++|+|+++|+||
T Consensus 2 ~h~m~l~~~~f~~I~~G~KtiEiRlnd~k~~~ikvGD~I~f~~~~l~~~V~~v~~Y~sF~~ll~~e~~~~~~p~~~s~ee 81 (109)
T 2z0t_A 2 KWEMGLQEEYIELIKAGKKKIEGRLYDEKRRQIKPGDIIIFEGGKLKVKVKGIRVYSSFKEMLEKEGIENVLPGVKSIEE 81 (109)
T ss_dssp EEEECCCHHHHHHHHTTSCCEEEEECCTTGGGCCTTCEEEEGGGTEEEEEEEEEEESCHHHHHHHHCHHHHSTTCCCHHH
T ss_pred eEEEEcChHHHHHHHcCCCEEEEEecchhhhcCCCCCEEEECCCEEEEEEEEEEccCCHHHHHHhcChhhcCCCCCCHHH
Confidence 5999999999999999999999999999999999999999995 899999999999999999999999999999999999
Q ss_pred HHHHHHhhCCHhHHhhccEEEEEEecC
Q 025744 205 GVQVYRRFYTEEKEKTNGVIAICVTKP 231 (248)
Q Consensus 205 gv~~yr~iYskEkE~~yGVVAI~I~~~ 231 (248)
|+++||+|||+|||++||||||+|++.
T Consensus 82 ~v~~~~~~Y~~e~E~~~GVlaI~i~~~ 108 (109)
T 2z0t_A 82 GVKVYRQFYDEEREKKYGVVAIEIEPI 108 (109)
T ss_dssp HHHHHHTTCCHHHHHHHCEEEEEEEEC
T ss_pred HHHHHHHhCCHHHHHhcCEEEEEEEEc
Confidence 999999999999999999999999863
No 2
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=100.00 E-value=1.2e-41 Score=273.76 Aligned_cols=108 Identities=25% Similarity=0.443 Sum_probs=105.3
Q ss_pred cceeeeccchhhHHHhcCCceEEEEccCccccCCCCCCEEEEcceEEEEEEEEeecCCHHHHHhhcCccccCCCCCCHHH
Q 025744 125 VNFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKCLVLKVQDVHGYLSFSEMLQAESLAKVLPGIKTIDE 204 (248)
Q Consensus 125 ~~heM~L~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~e~l~v~V~~Vr~Y~SF~eLLe~E~l~kvlPg~~SiEE 204 (248)
..|+|+|+++||++|++|+||||||+||+||++|++||+|+|++++.++|++|++|+||++||++|++++|+|+++|+||
T Consensus 2 ~~h~m~l~~~~F~~I~sG~KtiEiR~nd~~~~~i~vGD~I~f~~~l~~~V~~v~~Y~sF~~ll~~e~~~~v~p~~~s~ee 81 (113)
T 1xne_A 2 KVYRLYLKDEYLEMVKSGKKRIEVRVAYPQLKDIKRGDKIIFNDLIPAEVVEVKKYETFRQVLREEPIDKIFPDKPSFEK 81 (113)
T ss_dssp CEEEECCCHHHHHHHHHTCCCEEECCCTTTTTTCCTTCEEEETTTEEEEEEEEEECSSHHHHHHHSCHHHHCSSCCCHHH
T ss_pred ceEEEecChHHHHHHHcCCcEEEEEecchhhhccCCCCEEEEccceEEEEEEEEecCCHHHHHHhcCHHhcCCCCCCHHH
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCHhHHhhccEEEEEEecCC
Q 025744 205 GVQVYRRFYTEEKEKTNGVIAICVTKPA 232 (248)
Q Consensus 205 gv~~yr~iYskEkE~~yGVVAI~I~~~~ 232 (248)
|+++||+||++|||++||||||+|++..
T Consensus 82 ~~~~~~~~Y~~e~E~~~GVvaI~i~~~~ 109 (113)
T 1xne_A 82 ALKRFHNMYPKWKEYRYGVLAIKFRVLG 109 (113)
T ss_dssp HHHHHTTSSSSSCCCCCCCEEEEEEESS
T ss_pred HHHHHHHhCCHHHHHhcCEEEEEEEEcc
Confidence 9999999999999999999999999854
No 3
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=99.34 E-value=1.9e-12 Score=99.62 Aligned_cols=55 Identities=18% Similarity=0.276 Sum_probs=48.5
Q ss_pred cccceeeeccchhhHHHhcCCceEEEEccCccccCCCCCCEEEEc---------ceEEEEEEEEeec
Q 025744 123 KTVNFELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCN---------KCLVLKVQDVHGY 180 (248)
Q Consensus 123 ~~~~heM~L~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~---------e~l~v~V~~Vr~Y 180 (248)
.+..|+|.|+++||++|++|+||+|+|+||.+ +++||.|+|. +++.++|+.|.-|
T Consensus 6 ~~~~H~lki~~~~F~~V~~G~Kt~EiR~nDr~---~~vGD~l~l~E~~~g~yTGr~i~~~Vt~i~d~ 69 (83)
T 3iuw_A 6 HPTIHTLKIETEFFKAVKERRKTFEIRKNDRN---FQVGDILILEEYMNGMYLDDECEAEVIYITDY 69 (83)
T ss_dssp CCCEEEEEEEHHHHHHHHTTSCCEEEEECCSC---CCTTCEEEEEEEETTEEEEEEEEEEEEEEECT
T ss_pred cceEEEEEcCHHHHHHHHcCCcEEEEEecccC---CCCCCEEEEEEccCCCccCcEEEEEEEEEccc
Confidence 45679999999999999999999999999954 9999999984 5788999999544
No 4
>1te7_A Hypothetical UPF0267 protein YQFB; alpha + beta, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: b.122.1.7
Probab=98.25 E-value=1.5e-06 Score=67.50 Aligned_cols=92 Identities=12% Similarity=0.178 Sum_probs=68.3
Q ss_pred eeeccchhhHHHhcCCceEEEEccCccccCCCCCCEEEE--c--c--eEEEEEEEEeecCCHHHHHhhcCccccCCCCCC
Q 025744 128 ELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILC--N--K--CLVLKVQDVHGYLSFSEMLQAESLAKVLPGIKT 201 (248)
Q Consensus 128 eM~L~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F--~--e--~l~v~V~~Vr~Y~SF~eLLe~E~l~kvlPg~~S 201 (248)
.|.+++++.++|.+|+||+.+|. .+....++||.+.. + + -..++|++|+ +..|.++=++ .+...|. |
T Consensus 5 ~i~f~~~~~~~Il~G~KT~T~R~--~~e~~~~~Gd~~~v~~~~~~~~~~~i~vt~V~-~~~~~eitee---~A~~EG~-s 77 (103)
T 1te7_A 5 DITFFQRFQDDILAGRKTITIRD--ESESHFKTGDVLRVGRFEDDGYFCTIEVTATS-TVTLDTLTEK---HAEQENM-T 77 (103)
T ss_dssp SCCCCHHHHHHHHTCCCEEEEEC--GGGCCCCTTSEEEEEETTTEEEEEEEEEEEEE-EECSTTTSTH---HHHHTTS-C
T ss_pred EEEEcHHHHHHHHCCCCEEEEeC--CCCCCCCCCCEEEEEECCCCcEEEEEEEEEEE-EEcHHHhCHH---HHHHcCC-C
Confidence 47788999999999999999997 34556899999977 3 2 2456777775 5566665332 1223454 9
Q ss_pred HHHHHHHHHhhCCHhHHhhccEEEEEEec
Q 025744 202 IDEGVQVYRRFYTEEKEKTNGVIAICVTK 230 (248)
Q Consensus 202 iEEgv~~yr~iYskEkE~~yGVVAI~I~~ 230 (248)
+++-.+.+++||+.+.+ |..|++++
T Consensus 78 l~~~~~~~~~iYp~~~~----v~vI~F~~ 102 (103)
T 1te7_A 78 LTELKKVIADIYPGQTQ----FYVIEFKC 102 (103)
T ss_dssp HHHHHHHHHHHCSCCSC----EEEEEEEC
T ss_pred HHHHHHHHHHHcCCCCC----EEEEEEEE
Confidence 99999999999985533 88888875
No 5
>2kku_A Uncharacterized protein; alpha/beta protein, structural genomics, PSI-2, protein STRU initiative; NMR {Archaeoglobus fulgidus}
Probab=95.84 E-value=0.058 Score=45.92 Aligned_cols=90 Identities=13% Similarity=0.154 Sum_probs=65.5
Q ss_pred eeccchhhHHHh-cCCceEEEEccCccccCCCCCCEEEEc-----ce--EEEEEEEEeecCCHHHHHhhcCccccCCCCC
Q 025744 129 LHVQEPYFTQLK-DGLKTVEGRCAVGDYNRIGSGSLILCN-----KC--LVLKVQDVHGYLSFSEMLQAESLAKVLPGIK 200 (248)
Q Consensus 129 M~L~e~yF~lIk-sGkKTIE~RLnDeKrq~IkvGD~I~F~-----e~--l~v~V~~Vr~Y~SF~eLLe~E~l~kvlPg~~ 200 (248)
|-+.++|-+.|- +|+|++ +|=.+ -+.++++||.|+|. +. =.++|.+|-.|++-.+|.+..+-. + +.
T Consensus 31 lSIkpey~~rIf~~GkK~f-lrr~~-v~~~l~~Gd~vviYaS~P~~~iVGea~I~~Ii~~~~P~~lWe~~~d~-~--gI- 104 (161)
T 2kku_A 31 YPIPKRFMDRFFKKGKDVF-VKPAT-VWKELKPGMKFVFYQSHEDTGFVGEARIKRVVLSENPMQFFETFGDR-V--FL- 104 (161)
T ss_dssp ECCSSSTTHHHHHHSCEEE-EESSC-SCTTCCTTEEEEECCCSTTCBCCEEEEEEEEEEESCTHHHHHHTSTT-B--SS-
T ss_pred EecCHHHHHHHHhcCceEE-EeccC-cccccCCCCEEEEEEcCCCcEEEEEEEEEEEEecCCHHHHHHHhCcc-c--Cc-
Confidence 668899999999 999999 76322 46689999999997 22 356899999999999999987633 2 33
Q ss_pred CHHHHHHHHHhhCCHhHHhhcc----------EEEEEEec
Q 025744 201 TIDEGVQVYRRFYTEEKEKTNG----------VIAICVTK 230 (248)
Q Consensus 201 SiEEgv~~yr~iYskEkE~~yG----------VVAI~I~~ 230 (248)
|-+| +++||. .++. || .+||+|+.
T Consensus 105 Tkee----f~~Yy~-g~~~-w~~~~~~~~~~~~~aI~L~~ 138 (161)
T 2kku_A 105 TKDE----LKEYMK-SQER-WGRRRESKKKKLWMAIELED 138 (161)
T ss_dssp CHHH----HHHHHH-HHHH-TSSCCCCSSCCCEEEEEEEE
T ss_pred CHHH----HHHHhc-cccc-ccccccccccccEEEEEecc
Confidence 4444 444444 3333 33 68888876
No 6
>2dp9_A Hypothetical protein TTHA0113; jellyroll, structural genomics, NPPSFA, national project on structural and functional analyses; 1.90A {Thermus thermophilus} SCOP: b.122.1.5 PDB: 1wk2_A
Probab=89.93 E-value=0.61 Score=36.95 Aligned_cols=57 Identities=30% Similarity=0.300 Sum_probs=40.4
Q ss_pred eeeccchhhHHHhcCCceEEEEccCccccCCCCCCEEEEc--ceE--EEEEEEEeecCCHHHHHhh
Q 025744 128 ELHVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCN--KCL--VLKVQDVHGYLSFSEMLQA 189 (248)
Q Consensus 128 eM~L~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~--e~l--~v~V~~Vr~Y~SF~eLLe~ 189 (248)
-|-+.++|-++|-+|.||+|+|--..++ .|. |... ..+ .|+|+++..+.|-+++.+.
T Consensus 10 ~LSIkqpyA~lIl~G~K~~E~R~~~t~~----rg~-v~IhatG~ivG~~~i~d~~g~~~~eel~~~ 70 (124)
T 2dp9_A 10 GLIVREPYASLIVDGRKVWEIRRRKTRH----RGP-LGIVSGGRLIGQADLVGVEGPFSVEELLAH 70 (124)
T ss_dssp EEECCTTHHHHHHTTCCCEEEESSCCCC----CEE-EEEEETTEEEEEEEEEEEEEEECHHHHGGG
T ss_pred EEEEecHHHHHHHCCCceEEeeCCCCCC----CCE-EEEEECCCEEEEEEEEEEecCCCHHHHHHH
Confidence 4678999999999999999999875443 255 4443 443 4577787766666666543
No 7
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=77.34 E-value=2 Score=31.73 Aligned_cols=51 Identities=8% Similarity=0.053 Sum_probs=42.3
Q ss_pred HHHHhhcccceeeeccchhhHHHhcCCceEEEEccCc-cccCCCCCCEEEEc
Q 025744 117 EMIELLKTVNFELHVQEPYFTQLKDGLKTVEGRCAVG-DYNRIGSGSLILCN 167 (248)
Q Consensus 117 el~~~~~~~~heM~L~e~yF~lIksGkKTIE~RLnDe-Krq~IkvGD~I~F~ 167 (248)
..++.+++....+.|.+.+...+.=+.-|...++.|+ ....+++||.|.|.
T Consensus 12 G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~ 63 (80)
T 2qcp_X 12 GVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFN 63 (80)
T ss_dssp EEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEE
T ss_pred EEEEEEcCCCCEEEEEcCCcccCCCCceEEEEEccChhhhhcCCCCCEEEEE
Confidence 3455666666778899999888888889999999876 68999999999996
No 8
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=74.51 E-value=2.6 Score=31.71 Aligned_cols=51 Identities=8% Similarity=0.053 Sum_probs=42.3
Q ss_pred HHHHhhcccceeeeccchhhHHHhcCCceEEEEccCc-cccCCCCCCEEEEc
Q 025744 117 EMIELLKTVNFELHVQEPYFTQLKDGLKTVEGRCAVG-DYNRIGSGSLILCN 167 (248)
Q Consensus 117 el~~~~~~~~heM~L~e~yF~lIksGkKTIE~RLnDe-Krq~IkvGD~I~F~ 167 (248)
..++.+++..-.+.|.+.+...+.=+.=|...++.|+ ....+++||.|.|.
T Consensus 20 G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~ 71 (88)
T 2vb2_X 20 GVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFN 71 (88)
T ss_dssp EEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEE
T ss_pred EEEEEEcCCCCEEEEecCCcccCCCCceEEEEEcCChhhhhcCCCCCEEEEE
Confidence 3455666666678899999888888889999999876 78999999999996
No 9
>2e5o_A Activating signal cointegrator 1; TRIP4_C domain, ASC- 1, thyroid receptor-interacting protein 4, TRIP-4, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.67 E-value=4.3 Score=33.38 Aligned_cols=30 Identities=33% Similarity=0.494 Sum_probs=25.6
Q ss_pred eeeeccchhhHHHhcCCceEEEEccCcccc
Q 025744 127 FELHVQEPYFTQLKDGLKTVEGRCAVGDYN 156 (248)
Q Consensus 127 heM~L~e~yF~lIksGkKTIE~RLnDeKrq 156 (248)
.-|-+..+|-.+|..|.|+||+|--..+++
T Consensus 8 ~aLSirQPwAslIv~G~K~iE~R~W~T~~R 37 (154)
T 2e5o_A 8 WCLSVHQPWASLLVRGIKRVEGRSWYTPHR 37 (154)
T ss_dssp EEEEECTTHHHHHHHTSCCEEEESSCCCCC
T ss_pred cEEEEeCcHHHHHHcCCceeeccCCcCCCC
Confidence 457788999999999999999998766555
No 10
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=60.41 E-value=7 Score=29.02 Aligned_cols=60 Identities=12% Similarity=0.027 Sum_probs=43.9
Q ss_pred HHhhcccceeeeccchhhHHHhcCCceEEEEccCc-cccCCCCCCEEEEc----ceEEEEEEEEeec
Q 025744 119 IELLKTVNFELHVQEPYFTQLKDGLKTVEGRCAVG-DYNRIGSGSLILCN----KCLVLKVQDVHGY 180 (248)
Q Consensus 119 ~~~~~~~~heM~L~e~yF~lIksGkKTIE~RLnDe-Krq~IkvGD~I~F~----e~l~v~V~~Vr~Y 180 (248)
++.+++.. +.|.+.+...+.=..=|...++.+. ..+.+++||.|.|. +.=.-.|++|+.=
T Consensus 10 V~~vd~~~--iTi~H~pI~~l~wPaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~~~g~~~it~i~~~ 74 (82)
T 2l55_A 10 IQSIGERS--LIIAHEAIPSAQWGAMTMEFAAPPAGLPQGLKAGDRVAFSFRLDPHGMATLVTVAPQ 74 (82)
T ss_dssp EEECCSSE--EEEEECCCTTTTCCCEEEEEECCTTCCCSSCSTTCEEEEEEEEETTTEEEEEEEEEC
T ss_pred EEEEcccc--EEEecCCccccCCCceEEEEEcCChhHhhcCCCCCEEEEEEEECCCCeEEEEEEEec
Confidence 34445543 7888888888888888999999875 68899999999996 2102456666653
No 11
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=55.08 E-value=12 Score=32.24 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=36.7
Q ss_pred eeeccchhhHHHhcCC--ceEEEEccCccccCCCCCCEEEEcceEEE
Q 025744 128 ELHVQEPYFTQLKDGL--KTVEGRCAVGDYNRIGSGSLILCNKCLVL 172 (248)
Q Consensus 128 eM~L~e~yF~lIksGk--KTIE~RLnDeKrq~IkvGD~I~F~e~l~v 172 (248)
++.||+.+ +.+-.|. .+|++=|.++==..++|||.|.++..+.+
T Consensus 194 ~ikiQE~p-e~vp~G~~Prsi~v~l~~dLvd~~~PGDrV~vtGI~~~ 239 (268)
T 2vl6_A 194 KAVIQERP-EEVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDI 239 (268)
T ss_dssp EEEEECCG-GGSCTTSCCCEEEEEEEGGGTTSSCTTCEEEEEEEEEE
T ss_pred EEEEEeCC-CCCCCCCCCcEEEEEEccCccCcccCCCEEEEEEEEEE
Confidence 57888876 5577888 79999999999999999999999865543
No 12
>1vky_A S-adenosylmethionine:tRNA ribosyltransferase-ISOM; TM0574, struct genomics, JCSG, protein structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: e.53.1.1
Probab=53.56 E-value=16 Score=34.18 Aligned_cols=59 Identities=12% Similarity=0.202 Sum_probs=27.4
Q ss_pred cCCCCCCEEEEcceEEEEEEEEe---------ecCCHHHHHhhcCccccCCCCCCHHHHHHHHHhhCCHh
Q 025744 156 NRIGSGSLILCNKCLVLKVQDVH---------GYLSFSEMLQAESLAKVLPGIKTIDEGVQVYRRFYTEE 216 (248)
Q Consensus 156 q~IkvGD~I~F~e~l~v~V~~Vr---------~Y~SF~eLLe~E~l~kvlPg~~SiEEgv~~yr~iYskE 216 (248)
+++|+|+.|.|.+.+.++|.+.. .|+. .++|++.|--. +|-+=..+.-.+.|...|.++
T Consensus 111 kk~k~G~~l~f~~~l~a~v~~~~~~g~r~~~f~~~~-~~~L~~~G~~P-LPPYI~r~~D~erYQTVyAk~ 178 (347)
T 1vky_A 111 QKVKKGTELVIDEDLSAVCLGRGEDGTRILKFQPQD-DRLIFEKGRTP-LPPYIKNEVPLERYQTVYAKE 178 (347)
T ss_dssp TTCCTTCEEEEETTEEEEEEEECTTSCEEEEEESCC-HHHHHHHC-------------------------
T ss_pred CCCCCCCEEEeCCCeEEEEEEeeCCCcEEEEEecCC-HHHHHhCCCCC-CCCccCCCCChHHcchhhcCC
Confidence 68899999999866888888752 2466 78888866332 454411112446688888754
No 13
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=53.20 E-value=13 Score=29.56 Aligned_cols=52 Identities=6% Similarity=0.042 Sum_probs=32.9
Q ss_pred HHHhcCCceEEEEccCccccCCCCCCEEEEc---ceEEEEEEEEeec----CCHHHHHhh
Q 025744 137 TQLKDGLKTVEGRCAVGDYNRIGSGSLILCN---KCLVLKVQDVHGY----LSFSEMLQA 189 (248)
Q Consensus 137 ~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~---e~l~v~V~~Vr~Y----~SF~eLLe~ 189 (248)
.+|++|.=+|-++.. ..-..|++||.|.+. ....++|.++-.- +..+.||+.
T Consensus 29 ~li~~G~V~VNG~~v-k~s~~V~~GD~I~I~~~~~~~~~~v~~~~~~r~~a~~a~~lYed 87 (133)
T 1dm9_A 29 EMIEGGKVHYNGQRS-KPSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYEE 87 (133)
T ss_dssp HHHHTTCEEETTEEC-CTTCBCCTTCEEEEEETTEEEEEEECEEESCCCCHHHHGGGEEE
T ss_pred HHHHCCcEEECCEEc-CCCCEeCCCCEEEEEeCCceeeEEEccccccCCCcHHhhhheEE
Confidence 567888755544443 234579999999986 4677788777433 224445554
No 14
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=51.72 E-value=13 Score=32.54 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=36.9
Q ss_pred eeeccchhhHHHhcCC--ceEEEEccCccccCCCCCCEEEEcceEEE
Q 025744 128 ELHVQEPYFTQLKDGL--KTVEGRCAVGDYNRIGSGSLILCNKCLVL 172 (248)
Q Consensus 128 eM~L~e~yF~lIksGk--KTIE~RLnDeKrq~IkvGD~I~F~e~l~v 172 (248)
++.||+.+ +.+-.|. .+|++=|.++==..++|||.|.++..+.+
T Consensus 181 ~ikiQE~p-e~vp~G~~Prsi~V~l~~dLvd~~~PGDrV~vtGI~~~ 226 (279)
T 1ltl_A 181 TLKLQEPL-ENLSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRT 226 (279)
T ss_dssp EEEEECCS-TTCCSSCCCCEEEEEEEGGGTTCCCTTCEEEEEEEEEE
T ss_pred EEEEecCc-ccCCCCCCCeEEEEEEcccccCccCCCCEEEEEEEEEE
Confidence 57888876 6677887 79999999999999999999999865544
No 15
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=51.58 E-value=34 Score=26.58 Aligned_cols=51 Identities=12% Similarity=0.201 Sum_probs=40.5
Q ss_pred HhcCCceEEEEccCc-------cccCCCCCCEEEE-------cceEEEEEEEEeecCCHHHHHhh
Q 025744 139 LKDGLKTVEGRCAVG-------DYNRIGSGSLILC-------NKCLVLKVQDVHGYLSFSEMLQA 189 (248)
Q Consensus 139 IksGkKTIE~RLnDe-------Krq~IkvGD~I~F-------~e~l~v~V~~Vr~Y~SF~eLLe~ 189 (248)
|.+|+-+|++|+-+. +...+++||.+.- +++..+.+..||.=++|.++.-+
T Consensus 59 ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~f~g~~qi~~~~ir~v~d~Nei~~H 123 (136)
T 4gop_B 59 VEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKSFQNRRSISSGHMRPVIDYNEVMFH 123 (136)
T ss_dssp EECSSCEEEEEEECC--------CCSCCTTCEEEEEEEEEEETTEEEEEESEEEECSSHHHHHHH
T ss_pred EECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEEEEeCCEEEEEEEEEEECCCccHHHHH
Confidence 456777999998654 4678999999874 47788899999999999987654
No 16
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=45.86 E-value=7.7 Score=27.66 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=24.8
Q ss_pred HHHhcCCceEEEEccCccccCCCCCCEEEEcceE
Q 025744 137 TQLKDGLKTVEGRCAVGDYNRIGSGSLILCNKCL 170 (248)
Q Consensus 137 ~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~e~l 170 (248)
.+|++|.=+|-++.......++++||.|.+.+..
T Consensus 41 ~lI~~G~V~VNG~~v~~~~~~v~~gd~I~v~~~~ 74 (79)
T 1p9k_A 41 IAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHS 74 (79)
T ss_dssp HHHHHHHHEETTBCCCCSSCCCCSSEEEEETTEE
T ss_pred HHHHCCEEEECCEEecCCCCCCCCCCEEEECCEE
Confidence 5677777666666655556789999999998543
No 17
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=44.97 E-value=39 Score=26.14 Aligned_cols=51 Identities=10% Similarity=0.061 Sum_probs=38.8
Q ss_pred HhcCCc-eEEEEccCc------cccCCCCCCEEEE-------cceEEEEEEEEeecCCHHHHHhh
Q 025744 139 LKDGLK-TVEGRCAVG------DYNRIGSGSLILC-------NKCLVLKVQDVHGYLSFSEMLQA 189 (248)
Q Consensus 139 IksGkK-TIE~RLnDe------Krq~IkvGD~I~F-------~e~l~v~V~~Vr~Y~SF~eLLe~ 189 (248)
|.+|+- +||+|.-+. ....+++||.+.- +++..+.+..||.=++|.++.-+
T Consensus 54 ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~~f~g~~qi~~~~ir~v~d~Nei~~H 118 (132)
T 3kdf_D 54 IDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEFTTH 118 (132)
T ss_dssp EECSSSSCEEEEEEC---------CCCCTTCEEEEEEEEEEETTEEEEEEEEEEECSSTHHHHHH
T ss_pred EECCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEEEeECCEEEEEEEEEEEcCCccHHHHH
Confidence 456777 999998654 2678999999874 46788889999999999887543
No 18
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=40.89 E-value=36 Score=27.34 Aligned_cols=49 Identities=22% Similarity=0.265 Sum_probs=30.8
Q ss_pred hhhhhhhHHHHhhcccceeeeccchhhHHHhcCCceEEEEccCc--------------cccCCCCCCEEEEc
Q 025744 110 LVLKEGSEMIELLKTVNFELHVQEPYFTQLKDGLKTVEGRCAVG--------------DYNRIGSGSLILCN 167 (248)
Q Consensus 110 l~~~~g~el~~~~~~~~heM~L~e~yF~lIksGkKTIE~RLnDe--------------Krq~IkvGD~I~F~ 167 (248)
|...+.+.- .-++.....+.|+.+ | |++++|+... +-.+|+.||.++|.
T Consensus 64 L~IP~~Fa~-~~lp~~~~~i~L~~~-------g-k~W~v~~~~~~~~~~ls~GW~~Fv~dn~L~~GD~cvFe 126 (146)
T 4i1k_A 64 MYLPSGFAE-KYLSGISGFIKVQLA-------E-KQWPVRCLYKAGRAKFSQGWYEFTLENNLGEGDVCVFE 126 (146)
T ss_dssp EECCHHHHH-HHCTTCCSEEEEEET-------T-EEEEEEEEEETTEEEECTTHHHHHHHTTCCTTCEEEEE
T ss_pred EEeCHHHHH-HhCCCCCeEEEEEEC-------C-cEEEEEEEEeCCcEEECCchHHHHHHcCCCCCCEEEEE
Confidence 444443332 235555556666643 5 8888887532 22789999999996
No 19
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=40.07 E-value=18 Score=26.16 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=26.0
Q ss_pred HHHhcCCceEEEEccCccccCCCCCCEEEEc---ceEEEEEEEE
Q 025744 137 TQLKDGLKTVEGRCAVGDYNRIGSGSLILCN---KCLVLKVQDV 177 (248)
Q Consensus 137 ~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~---e~l~v~V~~V 177 (248)
.+|++|.=+|-++.. ..-.++++||.|.+. +....+|.++
T Consensus 21 ~li~~G~V~VNg~~~-~~~~~v~~gd~I~v~~~~~~~~~~~~~~ 63 (92)
T 2k6p_A 21 DMCNVGAVWLNGSCA-KASKEVKAGDTISLHYLKGIEEYTILQI 63 (92)
T ss_dssp CHHHHTCCEETTEEC-CTTCBCCTTCEEEECCSSCCEEEEECCC
T ss_pred HHHHCCcEEECCEEc-CCCCCcCCCCEEEEEeCCceEEEEEecc
Confidence 567888755555543 345679999999986 3455555543
No 20
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=38.31 E-value=14 Score=26.81 Aligned_cols=28 Identities=11% Similarity=-0.175 Sum_probs=19.8
Q ss_pred hcCCceEEEEccCcc----ccCCCCCCEEEEc
Q 025744 140 KDGLKTVEGRCAVGD----YNRIGSGSLILCN 167 (248)
Q Consensus 140 ksGkKTIE~RLnDeK----rq~IkvGD~I~F~ 167 (248)
.++.++|||.+.|-+ .-.|++||.|.|.
T Consensus 10 ~a~~~~v~V~~~~~~F~P~~i~v~~G~tV~~~ 41 (100)
T 4hci_A 10 IASAKVIEVELNDDYFNPNVITIPINESTTLL 41 (100)
T ss_dssp ----CCEEEEEETTEEESSEEEECTTSCEEEE
T ss_pred CCCCcEEEEEEECCEEeCCEEEECCCCEEEEE
Confidence 357889999998764 4578999999983
No 21
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=31.38 E-value=60 Score=24.00 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=22.3
Q ss_pred hHHHhcCCceEEEEccCccccCCCCCCEEEEc
Q 025744 136 FTQLKDGLKTVEGRCAVGDYNRIGSGSLILCN 167 (248)
Q Consensus 136 F~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~ 167 (248)
|-+|-+|+ +++++++++...+++||.|.|.
T Consensus 52 ~~~Vl~G~--~~~~i~~g~~~~l~~GD~i~ip 81 (101)
T 1o5u_A 52 TCYILEGK--VEVTTEDGKKYVIEKGDLVTFP 81 (101)
T ss_dssp EEEEEEEE--EEEEETTCCEEEEETTCEEEEC
T ss_pred EEEEEeCE--EEEEECCCCEEEECCCCEEEEC
Confidence 44566675 4445566788899999999997
No 22
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=31.27 E-value=30 Score=23.93 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=11.6
Q ss_pred cccCCCCCCEEEEc
Q 025744 154 DYNRIGSGSLILCN 167 (248)
Q Consensus 154 Krq~IkvGD~I~F~ 167 (248)
..-.+++||.|.|.
T Consensus 19 ~~i~v~~Gd~V~~~ 32 (91)
T 1bxv_A 19 STIEIQAGDTVQWV 32 (91)
T ss_dssp SEEEECTTCEEEEE
T ss_pred CEEEECCCCEEEEE
Confidence 55678999999995
No 23
>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24
Probab=30.97 E-value=39 Score=26.25 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=24.0
Q ss_pred eccchhhHHHhcCCceEEEEccCccccCCCCCCEEEEc
Q 025744 130 HVQEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCN 167 (248)
Q Consensus 130 ~L~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~ 167 (248)
+-...-|-.|-+|+=++.+ + ++...+++||.|.|.
T Consensus 72 h~~~~E~~~VLeG~~~l~~--~-g~~~~l~~GD~i~~p 106 (133)
T 2pyt_A 72 TLNYDEIDMVLEGELHVRH--E-GETMIAKAGDVMFIP 106 (133)
T ss_dssp ECSSEEEEEEEEEEEEEEE--T-TEEEEEETTCEEEEC
T ss_pred cCCCCEEEEEEECEEEEEE--C-CEEEEECCCcEEEEC
Confidence 3334455667777666555 4 555689999999996
No 24
>1t62_A Conserved hypothetical protein; NYSGXRC, target T1587, unknown function, PSI, protein struct initiative; 3.00A {Enterococcus faecalis} SCOP: b.122.1.4
Probab=27.71 E-value=1e+02 Score=25.85 Aligned_cols=91 Identities=15% Similarity=0.089 Sum_probs=53.5
Q ss_pred cchhhHHHhcCCceEEEEccCc----cccCCCCCCE-EEEc------ceEEEEEEEEeecCCHH---HHHhhcCccccCC
Q 025744 132 QEPYFTQLKDGLKTVEGRCAVG----DYNRIGSGSL-ILCN------KCLVLKVQDVHGYLSFS---EMLQAESLAKVLP 197 (248)
Q Consensus 132 ~e~yF~lIksGkKTIE~RLnDe----Krq~IkvGD~-I~F~------e~l~v~V~~Vr~Y~SF~---eLLe~E~l~kvlP 197 (248)
.++..++|.+|+||--.++.+. .-.--++||. |+.+ -.+.++-+.+.+|..-. +..+.|
T Consensus 36 ad~L~~LVl~G~KTAT~s~~~~Y~~~~e~lP~vG~~~Ivld~~g~pvcii~tt~V~~~pf~eVt~e~A~~EGE------- 108 (166)
T 1t62_A 36 GNRLGQLVVSGRKTATCSSLDIYKMEEEQLPKAGQYDIILDGQSQPLAIIRTTKVEIMPMNKVSESFAQAEGE------- 108 (166)
T ss_dssp HHHHHHHHHHTSCCEEEEESTTSCTTTCCCCCTTCEEEEECTTSCEEEEEEEEEEEEEEGGGCCHHHHHHHC--------
T ss_pred HHHHHHHHHcCCeEEEecCHHHHhhcCCCCCCCCcEEEEEcCCCCEEEEEEEEEEEEEEcccCCHHHHHHhCC-------
Confidence 4568899999999999998643 1224489965 4454 13444555555555432 223322
Q ss_pred CCCCHHHHHHHHHhhCCHhHHhhcc--------EEEEEEec
Q 025744 198 GIKTIDEGVQVYRRFYTEEKEKTNG--------VIAICVTK 230 (248)
Q Consensus 198 g~~SiEEgv~~yr~iYskEkE~~yG--------VVAI~I~~ 230 (248)
|-.|++.=.+.-..||++|-.. .| ||..++++
T Consensus 109 GD~Sl~~Wr~~H~~ff~~e~~~-~g~~f~~d~~vV~E~Fev 148 (166)
T 1t62_A 109 GDLTLDYWYEEHARFFKEELAP-YQLQFYPDMLLVCQSFEV 148 (166)
T ss_dssp ----CTHHHHHHHHHHHHHHTT-TTCCCCTTCEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHh-cCCCCCCCceEEEEEEEE
Confidence 3247888778888888765432 32 56666555
No 25
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=26.51 E-value=1e+02 Score=26.68 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=37.7
Q ss_pred HhcCCc-eEEEEccCc------cccCCCCCCEEEE-------cceEEEEEEEEeecCCHHHH
Q 025744 139 LKDGLK-TVEGRCAVG------DYNRIGSGSLILC-------NKCLVLKVQDVHGYLSFSEM 186 (248)
Q Consensus 139 IksGkK-TIE~RLnDe------Krq~IkvGD~I~F-------~e~l~v~V~~Vr~Y~SF~eL 186 (248)
|.+|+- +|++|+-+. ....+++||.|.. +++..+.+..||.=++|.++
T Consensus 94 L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~~f~g~~qi~i~~ir~v~d~nEi 155 (270)
T 2pi2_A 94 IDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLRSFQNKKSLVAFKIMPLEDMNEF 155 (270)
T ss_dssp EECSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEEEETTEEEEEEEEEEECSCTHHH
T ss_pred EECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEEecCCeeEEEEEEEEecCCHhHH
Confidence 456676 899998754 2577899999874 47788899999999998886
No 26
>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}
Probab=26.39 E-value=73 Score=24.47 Aligned_cols=31 Identities=10% Similarity=0.225 Sum_probs=21.8
Q ss_pred hhHHHhcCCceEEEEccCccccCCCCCCEEEEc
Q 025744 135 YFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCN 167 (248)
Q Consensus 135 yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~ 167 (248)
-|-.|-+|+=+| ++.+++...+++||.+.|-
T Consensus 70 E~~~Vl~G~~~l--~~~~g~~~~l~~GD~~~ip 100 (123)
T 3bcw_A 70 EYCHIIEGEARL--VDPDGTVHAVKAGDAFIMP 100 (123)
T ss_dssp EEEEEEEEEEEE--ECTTCCEEEEETTCEEEEC
T ss_pred EEEEEEEEEEEE--EECCCeEEEECCCCEEEEC
Confidence 344566665444 4446777889999999995
No 27
>2db7_A Hairy/enhancer-OF-split related with YRPW motif 1; structural genomics, unknown function, DNA binding protein, NPPSFA; 1.90A {Homo sapiens} SCOP: a.273.1.1
Probab=26.09 E-value=47 Score=23.80 Aligned_cols=31 Identities=23% Similarity=0.459 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHhhccccccccCCCCCHHHHHhhhhc
Q 025744 14 YTKCIEEALKFILESHINQTLELDLGLSKDLCSFLLTH 51 (248)
Q Consensus 14 ~~~~~~e~~~~~l~sh~~~~~~~~l~ls~~~c~~ll~~ 51 (248)
+++|+.|..||.-. .+ .+.-+++.|.+||.|
T Consensus 24 f~eC~~EV~rfLs~----~e---g~d~~d~~r~rLl~H 54 (64)
T 2db7_A 24 FRECLAEVARYLSI----IE---GLDASDPLRVRLVSH 54 (64)
T ss_dssp HHHHHHHHHHHHHH----TS---CCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc----CC---CCCcchHHHHHHHHH
Confidence 46799999999762 11 122234467777763
No 28
>3vab_A Diaminopimelate decarboxylase 1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: LLP; 2.10A {Brucella melitensis BV}
Probab=24.15 E-value=1.3e+02 Score=27.80 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=27.3
Q ss_pred ccCCCCCCEEEEc-------------------ceEEE---EEEEEeecCCHHHHHhhcC
Q 025744 155 YNRIGSGSLILCN-------------------KCLVL---KVQDVHGYLSFSEMLQAES 191 (248)
Q Consensus 155 rq~IkvGD~I~F~-------------------e~l~v---~V~~Vr~Y~SF~eLLe~E~ 191 (248)
...+++||+|.|. ..+.+ ++.-||+..||++|+..+-
T Consensus 380 lp~l~~GD~l~~~~~GAY~~~~ss~fN~~~~p~~v~v~~~~~~~ir~ret~~dl~~~~~ 438 (443)
T 3vab_A 380 VAKPAPGDLIAICTTGAYGAVLSSTYNSRLLIPEVLGDGERYHVVRPRRTYEELLALDS 438 (443)
T ss_dssp EECCCTTCEEEEESCTTTTGGGCCCGGGCCCCCEEEEETTEEEEEECCCCHHHHHHTSC
T ss_pred cCCCCCCCEEEEeCCCcCchhhhccccCCCCCcEEEEECCeEEEEEecCCHHHHHhccc
Confidence 3468999999993 12222 4556999999999998763
No 29
>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*
Probab=23.30 E-value=43 Score=28.49 Aligned_cols=52 Identities=13% Similarity=0.068 Sum_probs=38.2
Q ss_pred hHHHhcCCceEEEEccCccccCCCCCCEEEEc----------ceEEEEEEEEeecCCHHHHHhhcC
Q 025744 136 FTQLKDGLKTVEGRCAVGDYNRIGSGSLILCN----------KCLVLKVQDVHGYLSFSEMLQAES 191 (248)
Q Consensus 136 F~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~----------e~l~v~V~~Vr~Y~SF~eLLe~E~ 191 (248)
+-+|-+|+=++. ++ ++...+++||.|.|. .. .+++.-+-..+.|+++++..+
T Consensus 242 ~~~vl~G~~~~~--i~-~~~~~l~~GD~~~ip~~~~H~~~n~~~-~~~~l~v~~~~~~~~~~~~~~ 303 (337)
T 1y3t_A 242 TFYCLEGQMTMW--TD-GQEIQLNPGDFLHVPANTVHSYRLDSH-YTKMVGVLVPGLFEPFFRTLG 303 (337)
T ss_dssp EEEEEESCEEEE--ET-TEEEEECTTCEEEECTTCCEEEEECSS-SEEEEEEEESSTTTHHHHHHS
T ss_pred EEEEEeCEEEEE--EC-CEEEEECCCCEEEECCCCeEEEEECCC-CeEEEEEEcCccHHHHHHHhc
Confidence 448889985554 44 467789999999995 22 466777778888888888754
No 30
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=22.62 E-value=53 Score=25.78 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=21.3
Q ss_pred HHhcCCceEEEEccCccccCCCCCCEEEEc
Q 025744 138 QLKDGLKTVEGRCAVGDYNRIGSGSLILCN 167 (248)
Q Consensus 138 lIksGkKTIE~RLnDeKrq~IkvGD~I~F~ 167 (248)
+|-+|.=+| +..|+....+++||.+.|-
T Consensus 66 ~iLeG~~~l--t~ddG~~~~l~aGD~~~~P 93 (116)
T 3es4_A 66 VVVEGEALY--SQADADPVKIGPGSIVSIA 93 (116)
T ss_dssp EEEECCEEE--EETTCCCEEECTTEEEEEC
T ss_pred EEEEeEEEE--EeCCCeEEEECCCCEEEEC
Confidence 455666444 5567888899999999995
No 31
>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase; beta-barrel, QUEA, quein queuosine, tRNA- modification; 2.88A {Bacillus subtilis}
Probab=22.53 E-value=1.1e+02 Score=28.50 Aligned_cols=58 Identities=24% Similarity=0.383 Sum_probs=32.2
Q ss_pred cCCCCCCEEEEcce-EEEEEEEE-------ee--cC-CHHHHHhhcCccccCCCCCCHHH---HHHHHHhhCCHh
Q 025744 156 NRIGSGSLILCNKC-LVLKVQDV-------HG--YL-SFSEMLQAESLAKVLPGIKTIDE---GVQVYRRFYTEE 216 (248)
Q Consensus 156 q~IkvGD~I~F~e~-l~v~V~~V-------r~--Y~-SF~eLLe~E~l~kvlPg~~SiEE---gv~~yr~iYskE 216 (248)
+++|+|+.|.|.+. +.++|++. -+ |+ +|.++|++.|--. +|-+ +.+ -.+.|...|.++
T Consensus 104 kk~k~G~~l~f~~~~l~a~v~~~~~~g~r~~~f~~~~~~~~~L~~~G~~P-LPPY--I~r~~~D~erYQTVyAk~ 175 (346)
T 1yy3_A 104 KRVKKGTVVTFGDGRLKAICTEELEHGGRKMEFQYDGIFYEVLESLGEMP-LPPY--IKEQLDDKERYQTVYSKE 175 (346)
T ss_dssp GGSCTTCEEEETTSSSEEEEEEECTTSCEEEEEECSSCHHHHHHHHHTCC-CCHH--HHTTSSSCC---------
T ss_pred CCCCCCCEEEECCCcEEEEEEEeeCCCcEEEEEecCCcHHHHHHHCCCCC-CCcc--cCCCCCChhhchhhhcCC
Confidence 58999999999854 88888864 22 34 5999999865222 4433 332 235677788754
No 32
>4hik_A Protection of telomeres protein 1; specificity, plasticity, promiscuity, OB-fold, ssDNA binding stranded telomeric DNA; HET: DNA; 1.64A {Schizosaccharomyces pombe} PDB: 4hid_A* 4him_A* 4hio_A* 4hj5_A* 4hj7_A* 4hj8_A* 4hj9_A* 4hja_A*
Probab=22.50 E-value=44 Score=27.30 Aligned_cols=26 Identities=15% Similarity=0.065 Sum_probs=23.2
Q ss_pred CCceEEEEccCc----cccCCCCCCEEEEc
Q 025744 142 GLKTVEGRCAVG----DYNRIGSGSLILCN 167 (248)
Q Consensus 142 GkKTIE~RLnDe----Krq~IkvGD~I~F~ 167 (248)
|+.|+.|-|.|+ -|+.+++||.+.+.
T Consensus 63 G~~tlqVtlwd~ha~~ar~~lk~Gd~v~L~ 92 (143)
T 4hik_A 63 GRFSIRCILWDEHDFYCRNYIKEGDYVVMK 92 (143)
T ss_dssp BSCCEEEEECHHHHHHHTTTCCTTCEEEEE
T ss_pred CcEEEEEEEECcHHHHHHhhCCCCCEEEEE
Confidence 999999999998 45789999999985
No 33
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=22.08 E-value=45 Score=23.81 Aligned_cols=15 Identities=13% Similarity=-0.033 Sum_probs=11.8
Q ss_pred ccccCCCCCCEEEEc
Q 025744 153 GDYNRIGSGSLILCN 167 (248)
Q Consensus 153 eKrq~IkvGD~I~F~ 167 (248)
+..-.+++||+|.|.
T Consensus 19 P~~i~v~~Gd~V~~~ 33 (106)
T 2gim_A 19 PAKLTIKPGDTVEFL 33 (106)
T ss_dssp SSEEEECTTCEEEEE
T ss_pred CCEEEECCCCEEEEE
Confidence 355678999999995
No 34
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=22.00 E-value=48 Score=25.32 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHhHhcCCCC
Q 025744 67 PLYKRLASVFHESVTSTASC 86 (248)
Q Consensus 67 ~l~~~la~~l~~~~~~~~~~ 86 (248)
|+|+.++..|.+.|.+|.+.
T Consensus 14 PlY~QI~~~i~~~I~~G~l~ 33 (134)
T 4ham_A 14 PIYEQIVQKIKEQVVKGVLQ 33 (134)
T ss_dssp CHHHHHHHHHHHHHHHTSSC
T ss_pred CHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999774
No 35
>1t2w_A Sortase; transpeptidase, beta barrel, hydrolase; 1.80A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1t2o_A 1ija_A 2kid_A* 1t2p_A
Probab=21.85 E-value=1e+02 Score=24.05 Aligned_cols=27 Identities=11% Similarity=0.197 Sum_probs=20.9
Q ss_pred ccCCCCCCEEEEc---ceEEEEEEEEeecC
Q 025744 155 YNRIGSGSLILCN---KCLVLKVQDVHGYL 181 (248)
Q Consensus 155 rq~IkvGD~I~F~---e~l~v~V~~Vr~Y~ 181 (248)
..++++||.|.++ +...-+|.+++.++
T Consensus 72 L~~l~~Gd~i~v~~~~~~~~Y~V~~~~~v~ 101 (145)
T 1t2w_A 72 LKAAKKGSMVYFKVGNETRKYKMTSIRDVK 101 (145)
T ss_dssp GGGCCTTCEEEEEETTEEEEEEEEEEEEEC
T ss_pred hhhCCCCCEEEEEECCEEEEEEEEEEEEEC
Confidence 4568899999996 56677888887764
No 36
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=21.75 E-value=19 Score=28.43 Aligned_cols=23 Identities=9% Similarity=0.034 Sum_probs=17.9
Q ss_pred CCchhHHHHHHHHHHHhHhcCCC
Q 025744 63 ESQYPLYKRLASVFHESVTSTAS 85 (248)
Q Consensus 63 ~~~~~l~~~la~~l~~~~~~~~~ 85 (248)
.|+|+=++.|...|..+|.++.|
T Consensus 93 LP~Y~s~e~L~~kL~~AI~~~gf 115 (118)
T 3pt3_A 93 VPLYSSKQILKQKLLLAIKTKNF 115 (118)
T ss_dssp EECCSSHHHHHHHHHHHHC----
T ss_pred CCCCCCHHHHHHHHHHHHHhCCc
Confidence 68999999999999999997543
No 37
>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}
Probab=21.34 E-value=20 Score=27.28 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=25.2
Q ss_pred cchhhHHHhcCCceEEEEccCccccCCCCCCEEEEc
Q 025744 132 QEPYFTQLKDGLKTVEGRCAVGDYNRIGSGSLILCN 167 (248)
Q Consensus 132 ~e~yF~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~ 167 (248)
...-+-+|-+|+=++++ +++...+++||.|.|-
T Consensus 58 ~~~E~~~Vl~G~~~~~~---~g~~~~l~~GD~v~ip 90 (119)
T 3lwc_A 58 AVDDVMIVLEGRLSVST---DGETVTAGPGEIVYMP 90 (119)
T ss_dssp SSEEEEEEEEEEEEEEE---TTEEEEECTTCEEEEC
T ss_pred CCCEEEEEEeCEEEEEE---CCEEEEECCCCEEEEC
Confidence 44455677788877766 5677889999999995
No 38
>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}
Probab=21.33 E-value=42 Score=23.65 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=22.9
Q ss_pred hHHHhcCCceEEEEccCc-cccCCCCCCEEEEc
Q 025744 136 FTQLKDGLKTVEGRCAVG-DYNRIGSGSLILCN 167 (248)
Q Consensus 136 F~lIksGkKTIE~RLnDe-Krq~IkvGD~I~F~ 167 (248)
|-.|.+|+ +++++.+. +...+++||.|.|.
T Consensus 42 ~~~Vl~G~--~~~~~~~g~~~~~l~~Gd~~~~p 72 (97)
T 2fqp_A 42 VVPMTTGP--LLLETPEGSVTSQLTRGVSYTRP 72 (97)
T ss_dssp EEESSCEE--EEEEETTEEEEEEECTTCCEEEC
T ss_pred EEEEeecE--EEEEeCCCCEEEEEcCCCEEEeC
Confidence 55677884 45566676 67889999999995
No 39
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=21.25 E-value=1.4e+02 Score=29.75 Aligned_cols=17 Identities=6% Similarity=-0.050 Sum_probs=13.3
Q ss_pred cccCCCCCCEEEEcceE
Q 025744 154 DYNRIGSGSLILCNKCL 170 (248)
Q Consensus 154 Krq~IkvGD~I~F~e~l 170 (248)
+-..|++||.|.|+-.+
T Consensus 385 ~C~~v~~g~~v~F~v~v 401 (690)
T 3fcs_B 385 SCMGLKIGDTVSFSIEA 401 (690)
T ss_dssp EECSCCTTCEEEEEEEE
T ss_pred cccccccCCeEEEEEEE
Confidence 45689999999997433
No 40
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=20.66 E-value=47 Score=24.86 Aligned_cols=14 Identities=29% Similarity=0.544 Sum_probs=11.9
Q ss_pred cccCCCCCCEEEEc
Q 025744 154 DYNRIGSGSLILCN 167 (248)
Q Consensus 154 Krq~IkvGD~I~F~ 167 (248)
..++.++||.|+|+
T Consensus 20 ~~~~f~vGD~L~F~ 33 (96)
T 2cbp_A 20 KGKRFRAGDILLFN 33 (96)
T ss_dssp TTCCBCTTCEEEEE
T ss_pred cCceEcCCCEEEEE
Confidence 45678999999996
No 41
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=20.52 E-value=48 Score=24.63 Aligned_cols=14 Identities=7% Similarity=0.261 Sum_probs=11.7
Q ss_pred cccCCCCCCEEEEc
Q 025744 154 DYNRIGSGSLILCN 167 (248)
Q Consensus 154 Krq~IkvGD~I~F~ 167 (248)
..+..++||.|+|+
T Consensus 15 ~~~~f~vGD~L~F~ 28 (91)
T 1f56_A 15 RGKSFRAGDVLVFK 28 (91)
T ss_dssp TTCCBCTTCEEEEE
T ss_pred CCccEeCCCEEEEE
Confidence 45678999999996
No 42
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=20.40 E-value=52 Score=25.06 Aligned_cols=26 Identities=19% Similarity=0.130 Sum_probs=18.7
Q ss_pred cCCceEEEEccC------ccccCCCCCCEEEE
Q 025744 141 DGLKTVEGRCAV------GDYNRIGSGSLILC 166 (248)
Q Consensus 141 sGkKTIE~RLnD------eKrq~IkvGD~I~F 166 (248)
....+|+|...+ ++.-.+++||+|+|
T Consensus 14 ~~~~~v~V~~~~~~~~F~P~~i~v~~G~tV~~ 45 (140)
T 1qhq_A 14 TPAQTVEVRAAPDALAFAQTSLSLPANTVVRL 45 (140)
T ss_dssp CCSEEEEEEBCSSSSSBSCSEEEEETTCEEEE
T ss_pred CCCEEEEEEEeCCCceEeCCeEEECCCCEEEE
Confidence 456788888743 34457788998887
No 43
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=20.18 E-value=53 Score=26.67 Aligned_cols=33 Identities=18% Similarity=0.158 Sum_probs=23.1
Q ss_pred hHHHhcCCceEEEEccCccccCCCCCCEEEEcc
Q 025744 136 FTQLKDGLKTVEGRCAVGDYNRIGSGSLILCNK 168 (248)
Q Consensus 136 F~lIksGkKTIE~RLnDeKrq~IkvGD~I~F~e 168 (248)
=++|++|.=+|-++..+..-.++++||.|.+..
T Consensus 70 r~lI~~G~V~VNG~~v~~ps~~V~~gD~I~V~~ 102 (159)
T 1c05_A 70 RQLVTHGHILVDGSRVNIPSYRVKPGQTIAVRE 102 (159)
T ss_dssp HHHHHTTCEEETTEECCCSSCBCCTTCEEEECG
T ss_pred HHHHHCCCEEECCEEeCcCCcEeCCCCEEEEeC
Confidence 367888885555555444456799999998863
Done!