BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025745
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZS3|A Chain A, High Resolution Structure Of Mal D 2, The Thaumatin Like
Food Allergen From Apple
Length = 222
Score = 177 bits (449), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 125/225 (55%), Gaps = 9/225 (4%)
Query: 27 QLILVNNCKETIWPGILGTAGHETPYNG--GFVLCSGEQTVLEVPEKWSGRIWPRQGCCF 84
++ NNC T+WPG L G + P GF L S ++ P WSGR W R C
Sbjct: 2 KITFTNNCPNTVWPGTL--TGDQKPQLSLTGFELASKASRSVDAPSPWSGRFWGRTRCST 59
Query: 85 DETTGKGSCQTGDC-AGLRQCKGLGGVPPATLVEMTLGTQASALHYYDVSLVDGFNVPVS 143
D GK +C+T DC +G C G G VPPATLVE+T+ YYDVSLVDGFN+P+S
Sbjct: 60 D-AAGKFTCETADCGSGQVACNGAGAVPPATLVEITIAANG-GQDYYDVSLVDGFNLPMS 117
Query: 144 MXXXXXXXXXXXXXXXXDLNICCPANLAVKK-QGKLVACKSACVAAKSDRYCCTGEFANP 202
+ ++N CPA L VK G +++CKSAC+A +YCCT P
Sbjct: 118 VAPQGGTGECKPSSCPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCTPPNNTP 177
Query: 203 RRCKPTVFSHLFKAICPRAYSYAYDDSTSLKTCR-APRYVITFCP 246
C PT +S +F+ CP+AYSYAYDD S TC P YVITFCP
Sbjct: 178 ETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 222
>pdb|2AHN|A Chain A, High Resolution Structure Of A Cherry Allergen Pru Av 2
Length = 222
Score = 160 bits (405), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 112/222 (50%), Gaps = 5/222 (2%)
Query: 28 LILVNNCKETIWPGILGTAGHETPYNGGFVLCSGEQTVLEVPEKWSGRIWPRQGCCFDET 87
+ NNC +WPG L + GF L S L+ P W+GR W R GC D
Sbjct: 3 ISFKNNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTD-A 61
Query: 88 TGKGSCQTGDCA-GLRQCKGLGGVPPATLVEMTLGTQASALHYYDVSLVDGFNVPVSMXX 146
+GK C T DCA G C G G +PPATL E + +YDVSLVDGFN+P+S+
Sbjct: 62 SGKFVCATADCASGQVMCNGNGAIPPATLAEFNI-PAGGGQDFYDVSLVDGFNLPMSVTP 120
Query: 147 XXXXXXXXXXXXXXDLNICCPANLAVK-KQGKLVACKSACVAAKSDRYCCTGEFANPRRC 205
++N CP+ L K G +VAC SACV + +YCCT P C
Sbjct: 121 QGGTGDCKTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNTPETC 180
Query: 206 KPTVFSHLFKAICPRAYSYAYDDSTSLKTCR-APRYVITFCP 246
PT +S +F CP AYSYAYDD TC P Y ITFCP
Sbjct: 181 PPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFCP 222
>pdb|1DU5|A Chain A, The Crystal Structure Of Zeamatin.
pdb|1DU5|B Chain B, The Crystal Structure Of Zeamatin
Length = 206
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/221 (41%), Positives = 112/221 (50%), Gaps = 19/221 (8%)
Query: 28 LILVNNCKETIWPGILGTAGHETPYNGGFVLCSGEQTVLEVPE-KWSGRIWPRQGCCFDE 86
+VN C T+W P GG L GE + P + RIW R GC FD
Sbjct: 3 FTVVNQCPFTVW-------AASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFD- 54
Query: 87 TTGKGSCQTGDCAGLRQCKGLGGVPPATLVEMTLGTQASALHYYDVSLVDGFNVPVSMXX 146
+G+GSC+TGDC G+ QC G G P TL E L Q + L ++D+SL+DGFNVP+S
Sbjct: 55 ASGRGSCRTGDCGGVLQCTGYGRAP-NTLAEYAL-KQFNNLDFFDISLIDGFNVPMSFLP 112
Query: 147 XXXXXXXXXXXXXXDLNICCPANLAVKKQGKLVACKSACVAAKSDRYCCTGEFANPRRCK 206
D+N CPA L ++ G C +AC K D YCC G AN C
Sbjct: 113 DGGSGCSRGPRCAVDVNARCPAEL--RQDG---VCNNACPVFKKDEYCCVGSAAN--DCH 165
Query: 207 PTVFSHLFKAICPRAYSYAYDDSTSLKTCRA-PRYVITFCP 246
PT +S FK CP AYSY DD+TS TC A Y + FCP
Sbjct: 166 PTNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 206
>pdb|4H8T|A Chain A, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
pdb|4H8T|B Chain B, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
Length = 198
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 108/219 (49%), Gaps = 27/219 (12%)
Query: 30 LVNNCKETIWPGILGTAGHETPYNGGFVLCSGEQTVLEV-PEKWSGRIWPRQGCCFDETT 88
++N C T+W +P GG L SG+ + V P + RIW R C FD
Sbjct: 5 ILNKCTYTVW-------AAASP-GGGRRLDSGQSWTITVNPGTTNARIWGRTSCTFD-AN 55
Query: 89 GKGSCQTGDCAGLRQCKGLGGVPPATLVEMTLGTQASALHYYDVSLVDGFNVPVSMXXXX 148
G+G C+TGDC GL +C+G G PP TL E L Q + L Y D+SLVDGFN+P+
Sbjct: 56 GRGKCETGDCNGLLECQGYGS-PPNTLAEFAL-NQPNNLDYIDISLVDGFNIPMDFSGCR 113
Query: 149 XXXXXXXXXXXXDLNICCPANLAVKKQGKLVACKSACVAAKSDRYCCTGEFANPRRCKPT 208
D+N CP+ L C + C K++ YCCT P C PT
Sbjct: 114 GIQCSV------DINGQCPSELKAPG-----GCNNPCTVFKTNEYCCT---DGPGSCGPT 159
Query: 209 VFSHLFKAICPRAYSYAYDDSTSLKTC-RAPRYVITFCP 246
+S FK CP AYSY DD TSL TC Y +TFCP
Sbjct: 160 TYSKFFKDRCPDAYSYPQDDKTSLFTCPSGTNYKVTFCP 198
>pdb|1Z3Q|A Chain A, Resolution Of The Structure Of The Allergenic And
Antifungal Banana Fruit Thaumatin-Like Protein At 1.7a
Length = 200
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/219 (38%), Positives = 106/219 (48%), Gaps = 25/219 (11%)
Query: 30 LVNNCKETIWPGILGTAGHETPYNGGFVLCSGEQTVLEVPEKWSG-RIWPRQGCCFDETT 88
+VN C T+W + G + L G+ + V +G RIW R GC FD +
Sbjct: 5 IVNRCSYTVWAAAVPGGGRQ--------LNQGQSWTINVNAGTTGGRIWGRTGCSFDGS- 55
Query: 89 GKGSCQTGDCAGLRQCKGLGGVPPATLVEMTLGTQASALHYYDVSLVDGFNVPVSMXXXX 148
G+G CQTGDC G+ C G PP TL E L Q + L ++D+SLVDGFNVP M
Sbjct: 56 GRGRCQTGDCGGVLSCTAYGN-PPNTLAEFAL-NQFNNLDFFDISLVDGFNVP--MDFSP 111
Query: 149 XXXXXXXXXXXXDLNICCPANLAVKKQGKLVACKSACVAAKSDRYCCTGEFANPRRCKPT 208
D+N CP A+K G C + C K+D+YCC N C PT
Sbjct: 112 TSGGCRGIRCAADINGQCPG--ALKAPG---GCNNPCTVFKTDQYCC-----NSGACSPT 161
Query: 209 VFSHLFKAICPRAYSYAYDDSTSLKTC-RAPRYVITFCP 246
+S FK CP AYSY DD T+ TC Y + FCP
Sbjct: 162 DYSQFFKRNCPDAYSYPKDDQTTTFTCPGGTNYRVVFCP 200
>pdb|1PCV|A Chain A, Crystal Structure Of Osmotin, A Plant Antifungal Protein
pdb|1PCV|B Chain B, Crystal Structure Of Osmotin, A Plant Antifungal Protein
Length = 205
Score = 122 bits (305), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 105/223 (47%), Gaps = 24/223 (10%)
Query: 28 LILVNNCKETIWPGILGTAGHETPYNGGFVLCSGEQTVLEVPEKWS-GRIWPRQGCCFDE 86
+ + NNC T+W TP GG L G+ V+ P R+W R C F+
Sbjct: 3 IEVRNNCPYTVW-------AASTPIGGGRRLDRGQTWVINAPRGTKMARVWGRTNCNFN- 54
Query: 87 TTGKGSCQTGDCAGLRQCKGLGGVPPATLVEMTLGTQASALHYYDVSLVDGFNVPVSMXX 146
G+G+CQTGDC G+ QC G G PP TL E L Q S L ++D+SLVDGFN+P++
Sbjct: 55 AAGRGTCQTGDCGGVLQCTGWG-KPPNTLAEYAL-DQFSGLDFWDISLVDGFNIPMTFAP 112
Query: 147 XXXXXXXXXXXX-XXDLNICCPANLAVKKQGKLVACKSACVAAKSDRYCCTGEFANPRRC 205
++N CP L V C + C +YCCT C
Sbjct: 113 TNPSGGKCHAIHCTANINGECPRELRVPG-----GCNNPCTTFGGQQYCCTQG-----PC 162
Query: 206 KPTVFSHLFKAICPRAYSYAYDDSTSLKTCR--APRYVITFCP 246
PT FS FK CP AYSY DD TS TC + Y + FCP
Sbjct: 163 GPTFFSKFFKQRCPDAYSYPQDDPTSTFTCPGGSTNYRVIFCP 205
>pdb|2I0W|A Chain A, Crystal Structure Analysis Of Np24-I, A Thaumatin-Like
Protein
Length = 207
Score = 121 bits (303), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 84/223 (37%), Positives = 105/223 (47%), Gaps = 24/223 (10%)
Query: 28 LILVNNCKETIWPGILGTAGHETPYNGGFVLCSGEQTVLEVPEKWS-GRIWPRQGCCFDE 86
+ + NNC T+W TP GG L G+ V+ P RIW R GC F+
Sbjct: 3 IEVRNNCPYTVW-------AASTPIGGGRRLNRGQTWVINAPRGTKMARIWGRTGCNFN- 54
Query: 87 TTGKGSCQTGDCAGLRQCKGLGGVPPATLVEMTLGTQASALHYYDVSLVDGFNVPVSMXX 146
G+G+CQTGDC G+ QC G G PP TL E L Q S L ++D+SLVDGFN+P++
Sbjct: 55 AAGRGTCQTGDCGGVLQCTGWG-KPPNTLAEYAL-DQFSNLDFWDISLVDGFNIPMTFAP 112
Query: 147 XXXXXXXXXXXX-XXDLNICCPANLAVKKQGKLVACKSACVAAKSDRYCCTGEFANPRRC 205
++N CP L V C + C +YCCT C
Sbjct: 113 TKPSGGKCHAIHCTANINGECPRALKVPG-----GCNNPCTTFGGQQYCCTQG-----PC 162
Query: 206 KPTVFSHLFKAICPRAYSYAYDDSTSLKTCR--APRYVITFCP 246
PT S FK CP AYSY DD TS TC + Y + FCP
Sbjct: 163 GPTELSKFFKKRCPDAYSYPQDDPTSTFTCPGGSTNYRVVFCP 205
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 103/218 (47%), Gaps = 18/218 (8%)
Query: 30 LVNNCKETIWPGILGTAGHETPYNGGFVLCSGEQTVLEV-PEKWSGRIWPRQGCCFDETT 88
+VN C T+W + G GG L SGE + V P G+IW R C FD++
Sbjct: 5 IVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDS- 61
Query: 89 GKGSCQTGDCAGLRQCKGLGGVPPATLVEMTLGTQASALHYYDVSLVDGFNVPVSMXXXX 148
G+G C+TGDC GL QCK G PP TL E +L Y D+S + GFNVP M
Sbjct: 62 GRGICRTGDCGGLLQCKRFG-RPPTTLAEFSLNQYGK--DYIDISNIKGFNVP--MDFSP 116
Query: 149 XXXXXXXXXXXXDLNICCPANLAVKKQGKLVACKSACVAAKSDRYCCTGEFANPRRCKPT 208
D+ CPA L G C AC ++ YCCT +C PT
Sbjct: 117 TTRGCRGVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCCT-----TGKCGPT 167
Query: 209 VFSHLFKAICPRAYSYAYDDSTSLKTCRAPRYVITFCP 246
+S FK +CP A+SY D T++ + Y +TFCP
Sbjct: 168 EYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|1KWN|A Chain A, 1.2 A Structure Of Thaumatin Crystallized In Gel
pdb|1LXZ|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LY0|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LR2|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1LR3|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1PP3|A Chain A, Structure Of Thaumatin In A Hexagonal Space Group
pdb|1PP3|B Chain B, Structure Of Thaumatin In A Hexagonal Space Group
pdb|2OQN|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1THI|A Chain A, Crystal Structures Of Two Intensely Sweet Proteins
pdb|2VHR|A Chain A, Atomic Resolution (0.95a) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 4 C
pdb|2VI1|A Chain A, Atomic Resolution (1.04 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 22 C.
pdb|2VI2|A Chain A, Atomic Resolution (1.05 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 4c
pdb|2VI3|A Chain A, Atomic Resolution (0.98 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 20 C
pdb|2VI4|A Chain A, Atomic Resolution (1.10 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 6 C.
pdb|2VU6|A Chain A, Atomic Resolution (0.95 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 19 C.
pdb|2VU7|A Chain A, Atomic Resolution (1.08 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 4 C
pdb|3QY5|A Chain A, Microfluidic Crystallization Of Thaumatin Using The
Crystal Former
pdb|4AXR|A Chain A, Crystal Structure Of Thaumatin From A Auto-Harvested
Crystal
pdb|4BAL|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-
Hydroxymethyltriazoledipicolinate Complex At 1.30 A
Resolution.
pdb|4BAR|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-Hydroxyethyltriazole
Dipicolinate Complex At 1.20 A Resolution.
pdb|3ZEJ|A Chain A, Thaumatin Structure Determined At Room Temperature By
In-Situ Diffraction In Chipx
Length = 207
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 102/218 (46%), Gaps = 18/218 (8%)
Query: 30 LVNNCKETIWPGILGTAGHETPYNGGFVLCSGEQTVLEV-PEKWSGRIWPRQGCCFDETT 88
+VN C T+W + G GG L SGE + V P G+IW R C FD++
Sbjct: 5 IVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDS- 61
Query: 89 GKGSCQTGDCAGLRQCKGLGGVPPATLVEMTLGTQASALHYYDVSLVDGFNVPVSMXXXX 148
G G C+TGDC GL +CK G PP TL E +L Y D+S + GFNVP M
Sbjct: 62 GSGICKTGDCGGLLRCKRFG-RPPTTLAEFSLNQYGK--DYIDISNIKGFNVP--MNFSP 116
Query: 149 XXXXXXXXXXXXDLNICCPANLAVKKQGKLVACKSACVAAKSDRYCCTGEFANPRRCKPT 208
D+ CPA L G C AC ++ YCCT +C PT
Sbjct: 117 TTRGCRGVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCCT-----TGKCGPT 167
Query: 209 VFSHLFKAICPRAYSYAYDDSTSLKTCRAPRYVITFCP 246
+S FK +CP A+SY D T++ + Y +TFCP
Sbjct: 168 EYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 300 K
Length = 207
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 102/218 (46%), Gaps = 18/218 (8%)
Query: 30 LVNNCKETIWPGILGTAGHETPYNGGFVLCSGEQTVLEV-PEKWSGRIWPRQGCCFDETT 88
+VN C T+W + G GG L SGE + V P G+IW R C FD++
Sbjct: 5 IVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDS- 61
Query: 89 GKGSCQTGDCAGLRQCKGLGGVPPATLVEMTLGTQASALHYYDVSLVDGFNVPVSMXXXX 148
G G C+TGDC GL +CK G PP TL E +L Y D+S + GFNVP M
Sbjct: 62 GSGICKTGDCGGLLRCKRFG-RPPTTLAEFSLNQYGK--DYIDISNIKGFNVP--MDFSP 116
Query: 149 XXXXXXXXXXXXDLNICCPANLAVKKQGKLVACKSACVAAKSDRYCCTGEFANPRRCKPT 208
D+ CPA L G C AC ++ YCCT +C PT
Sbjct: 117 TTRGCRGVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCCT-----TGKCGPT 167
Query: 209 VFSHLFKAICPRAYSYAYDDSTSLKTCRAPRYVITFCP 246
+S FK +CP A+SY D T++ + Y +TFCP
Sbjct: 168 EYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|1THV|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|2PE7|A Chain A, Thaumatin From Thaumatococcus Danielli In Complex With
Tris- Dipicolinate Europium
pdb|3E3S|A Chain A, Structure Of Thaumatin With The Magic Triangle I3c
pdb|3AL7|A Chain A, Recombinant Thaumatin I At 1.1 A
pdb|3ALD|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin I At
1.10 A
pdb|3VHF|A Chain A, Plant Thaumatin I At Ph 8.0
pdb|3VJQ|A Chain A, Recombinant Thaumatin At Ph 8.0 With Hydrogen Atoms
pdb|3VHG|A Chain A, Recombinant Thaumatin I At Ph 8.0
pdb|3V7V|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V82|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V84|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V87|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V88|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V8A|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCE|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCG|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCH|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCI|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCJ|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCK|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|4DC5|A Chain A, Crystal Structure Of Thaumatin Unexposed To Excessive
Sonicc Imaging Laser Dose.
pdb|4DC6|A Chain A, Crystal Structure Of Thaumatin Exposed To Excessive Sonicc
Imaging Laser Dose
Length = 207
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 102/218 (46%), Gaps = 18/218 (8%)
Query: 30 LVNNCKETIWPGILGTAGHETPYNGGFVLCSGEQTVLEV-PEKWSGRIWPRQGCCFDETT 88
+VN C T+W + G GG L SGE + V P G+IW R C FD++
Sbjct: 5 IVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDS- 61
Query: 89 GKGSCQTGDCAGLRQCKGLGGVPPATLVEMTLGTQASALHYYDVSLVDGFNVPVSMXXXX 148
G G C+TGDC GL +CK G PP TL E +L Y D+S + GFNVP M
Sbjct: 62 GSGICKTGDCGGLLRCKRFG-RPPTTLAEFSLNQYGK--DYIDISNIKGFNVP--MDFSP 116
Query: 149 XXXXXXXXXXXXDLNICCPANLAVKKQGKLVACKSACVAAKSDRYCCTGEFANPRRCKPT 208
D+ CPA L G C AC ++ YCCT +C PT
Sbjct: 117 TTRGCRGVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCCT-----TGKCGPT 167
Query: 209 VFSHLFKAICPRAYSYAYDDSTSLKTCRAPRYVITFCP 246
+S FK +CP A+SY D T++ + Y +TFCP
Sbjct: 168 EYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|2BLR|A Chain A, Thaumatin Before A High Dose X-Ray "burn"
pdb|2BLU|A Chain A, Thaumatin After A High Dose X-Ray "burn"
pdb|2VHK|A Chain A, Atomic Resolution (0.94 A) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 22c
pdb|2WBZ|A Chain A, 1.6 A Structure Of Thaumatin Crystallized Without Tartrate
At 4 C
pdb|3N02|A Chain A, Thaumatic Crystals Grown In Loops/micromounts
pdb|3N03|A Chain A, Thaumatin Crystals Grown From Drops
pdb|4AXU|A Chain A, Crystal Structure Of Thaumatin From An Auto-Harvested
Crystal, Control Experiment
Length = 206
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 102/218 (46%), Gaps = 18/218 (8%)
Query: 30 LVNNCKETIWPGILGTAGHETPYNGGFVLCSGEQTVLEV-PEKWSGRIWPRQGCCFDETT 88
+VN C T+W + G GG L SGE + V P G+IW R C FD++
Sbjct: 5 IVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDS- 61
Query: 89 GKGSCQTGDCAGLRQCKGLGGVPPATLVEMTLGTQASALHYYDVSLVDGFNVPVSMXXXX 148
G G C+TGDC GL +CK G PP TL E +L Y D+S + GFNVP M
Sbjct: 62 GSGICKTGDCGGLLRCKRFG-RPPTTLAEFSLNQYGK--DYIDISNIKGFNVP--MNFSP 116
Query: 149 XXXXXXXXXXXXDLNICCPANLAVKKQGKLVACKSACVAAKSDRYCCTGEFANPRRCKPT 208
D+ CPA L G C AC ++ YCCT +C PT
Sbjct: 117 TTRGCRGVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCCT-----TGKCGPT 167
Query: 209 VFSHLFKAICPRAYSYAYDDSTSLKTCRAPRYVITFCP 246
+S FK +CP A+SY D T++ + Y +TFCP
Sbjct: 168 EYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|1AUN|A Chain A, Pathogenesis-Related Protein 5d From Nicotiana Tabacum
Length = 208
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 83/219 (37%), Positives = 102/219 (46%), Gaps = 24/219 (10%)
Query: 32 NNCKETIWPGILGTAGHETPYNGGFVLCSGEQTVLEVPEKWS-GRIWPRQGCCFDETTGK 90
NNC T+W TP GG L G+ P RIW R C FD G+
Sbjct: 8 NNCPYTVW-------AAATPVGGGRRLERGQSWWFWAPPGTKMARIWGRTNCNFD-GAGR 59
Query: 91 GSCQTGDCAGLRQCKGLGGVPPATLVEMTLGTQASALHYYDVSLVDGFNVPVSMXXXXXX 150
G CQTGDC G+ +CKG G PP TL E L Q S L ++D+S++DGFN+P+S
Sbjct: 60 GWCQTGDCGGVLECKGWG-KPPNTLAEYAL-NQFSNLDFWDISVIDGFNIPMSFGPTKPG 117
Query: 151 XXXXXXXX-XXDLNICCPANLAVKKQGKLVACKSACVAAKSDRYCCTGEFANPRRCKPTV 209
++N CP +L V C + C +YCCT P C PT
Sbjct: 118 PGKCHGIQCTANINGECPGSLRVPG-----GCNNPCTTFGGQQYCCT---QGP--CGPTE 167
Query: 210 FSHLFKAICPRAYSYAYDDSTSLKTCRA--PRYVITFCP 246
S FK CP AYSY DD TS TC + Y + FCP
Sbjct: 168 LSRWFKQRCPDAYSYPQDDPTSTFTCTSWTTDYKVMFCP 206
>pdb|2D8O|A Chain A, Structure Of Vil-Thaumatin
Length = 207
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/218 (36%), Positives = 101/218 (46%), Gaps = 18/218 (8%)
Query: 30 LVNNCKETIWPGILGTAGHETPYNGGFVLCSGEQTVLEV-PEKWSGRIWPRQGCCFDETT 88
+VN C T+W + G GG L SGE + V P G+IW R C FD++
Sbjct: 5 IVNRCSYTVW--AAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXFDDS- 61
Query: 89 GKGSCQTGDCAGLRQCKGLGGVPPATLVEMTLGTQASALHYYDVSLVDGFNVPVSMXXXX 148
G G C+TGDC GL +CK G PP TL E +L Y D+S + GFNVP M
Sbjct: 62 GSGICKTGDCGGLLRCKRFG-RPPTTLAEFSL--NQXGKDYIDISNIKGFNVP--MNFSP 116
Query: 149 XXXXXXXXXXXXDLNICCPANLAVKKQGKLVACKSACVAAKSDRYCCTGEFANPRRCKPT 208
D+ CPA L G C AC ++ YCCT +C PT
Sbjct: 117 TTRGCRGVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCCT-----TGKCGPT 167
Query: 209 VFSHLFKAICPRAYSYAYDDSTSLKTCRAPRYVITFCP 246
S FK +CP A+SY D T++ + Y +TFCP
Sbjct: 168 EXSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|2D8P|A Chain A, Structure Of Hyper-Vil-Thaumatin
Length = 207
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 100/218 (45%), Gaps = 18/218 (8%)
Query: 30 LVNNCKETIWPGILGTAGHETPYNGGFVLCSGEQTVLEV-PEKWSGRIWPRQGCCFDETT 88
+VN C T+W + G GG L SGE + V P G+IW R C FD++
Sbjct: 5 IVNRCSXTVW--AAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXFDDS- 61
Query: 89 GKGSCQTGDCAGLRQCKGLGGVPPATLVEMTLGTQASALHYYDVSLVDGFNVPVSMXXXX 148
G G C+TGDC GL +CK G PP TL E +L D+S + GFNVP M
Sbjct: 62 GSGICKTGDCGGLLRCKRFG-RPPTTLAEFSL--NQXGKDXIDISNIKGFNVP--MNFSP 116
Query: 149 XXXXXXXXXXXXDLNICCPANLAVKKQGKLVACKSACVAAKSDRYCCTGEFANPRRCKPT 208
D+ CPA L G C AC ++ YCCT +C PT
Sbjct: 117 TTRGCRGVRCAADIVGQCPAKLKAPGGG----CNDACTVFQTSEYCCT-----TGKCGPT 167
Query: 209 VFSHLFKAICPRAYSYAYDDSTSLKTCRAPRYVITFCP 246
S FK +CP A+SY D T++ + Y +TFCP
Sbjct: 168 EXSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|3G7M|A Chain A, Structure Of The Thaumatin-Like Xylanase Inhibitor Tlxi
Length = 151
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 53/117 (45%), Gaps = 6/117 (5%)
Query: 28 LILVNNCKETIWPGILGTAGHETPYNGGFVLCSGEQTVLEVPEKWSGRIWPRQGCCFDET 87
L + N C T+WP + GG L G L+ P S IW R GC FD
Sbjct: 3 LTITNRCHFTVWPAVALVLAQG---GGGTELHPGASWSLDTPVIGSQYIWGRTGCSFDRA 59
Query: 88 TGKGSCQTGDCAGLRQCKGLGGVPPATLVEMTLGTQASALHYYDVSLVDGFNVPVSM 144
GKG CQTGDC G G P T+ E+++ Y S + GFNVP+++
Sbjct: 60 -GKGRCQTGDCGGSSLTCGGNPAVPTTMAEVSV--LQGNYTYGVTSTLKGFNVPMNL 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.450
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,918,231
Number of Sequences: 62578
Number of extensions: 267170
Number of successful extensions: 569
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 489
Number of HSP's gapped (non-prelim): 16
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)