Query 025745
Match_columns 248
No_of_seqs 141 out of 715
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 09:04:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025745.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025745hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09218 TLP-PA allergenic/anti 100.0 2E-85 4.3E-90 575.9 18.8 217 27-245 1-219 (219)
2 smart00205 THN Thaumatin famil 100.0 1.1E-83 2.5E-88 564.7 18.0 216 28-246 1-218 (218)
3 cd09219 TLP-F thaumatin-like p 100.0 8E-82 1.7E-86 554.9 18.0 213 28-246 1-229 (229)
4 PF00314 Thaumatin: Thaumatin 100.0 1.5E-79 3.3E-84 538.2 8.8 212 32-246 1-213 (213)
5 cd09215 Thaumatin-like the swe 100.0 1.1E-59 2.4E-64 394.4 14.8 155 28-245 1-157 (157)
6 cd09217 TLP-P thaumatin and al 100.0 9.5E-52 2.1E-56 344.9 14.1 149 28-246 1-151 (151)
7 cd08961 GH64-TLP-SF glycoside 100.0 5.3E-51 1.1E-55 341.0 14.2 152 28-244 1-153 (153)
8 PF04681 Bys1: Blastomyces yea 97.6 0.00077 1.7E-08 56.9 11.0 47 111-160 72-121 (155)
9 cd09216 GH64-LPHase-like glyco 95.5 0.077 1.7E-06 50.4 8.8 111 27-148 2-143 (353)
10 cd09214 GH64-like glycosyl hyd 95.4 0.014 3E-07 54.7 3.3 32 114-148 124-155 (319)
11 cd09220 GH64-GluB-like glycosi 91.4 0.55 1.2E-05 44.9 6.5 79 60-148 62-146 (369)
12 PF06282 DUF1036: Protein of u 72.9 5.1 0.00011 32.0 3.7 42 25-66 3-44 (115)
13 cd05468 pVHL von Hippel-Landau 69.6 7.6 0.00016 32.1 4.2 50 24-79 7-56 (141)
14 PF01847 VHL: von Hippel-Linda 58.8 9.2 0.0002 32.5 2.8 49 23-77 12-60 (156)
15 cd09220 GH64-GluB-like glycosi 57.3 9.6 0.00021 36.6 3.0 22 208-229 321-344 (369)
16 PF07172 GRP: Glycine rich pro 49.2 12 0.00027 29.0 1.9 16 13-28 12-28 (95)
17 cd09216 GH64-LPHase-like glyco 48.0 9.8 0.00021 36.3 1.4 22 208-229 310-333 (353)
18 PHA03094 dUTPase; Provisional 43.5 26 0.00056 28.9 3.1 28 55-82 35-68 (144)
19 TIGR03096 nitroso_cyanin nitro 34.7 83 0.0018 26.0 4.8 23 55-77 93-115 (135)
20 PF00947 Pico_P2A: Picornaviru 34.0 35 0.00076 28.0 2.4 39 89-134 83-121 (127)
21 PF11142 DUF2917: Protein of u 29.9 59 0.0013 23.1 2.8 22 56-77 2-28 (63)
22 PF13978 DUF4223: Protein of u 27.0 69 0.0015 22.4 2.5 22 17-38 14-35 (56)
23 cd07557 trimeric_dUTPase Trime 26.1 89 0.0019 22.9 3.3 28 55-82 13-46 (92)
24 PF05726 Pirin_C: Pirin C-term 25.6 74 0.0016 24.4 2.9 26 56-81 4-29 (104)
25 TIGR00192 urease_beta urease, 24.7 1.7E+02 0.0036 23.2 4.6 58 21-78 17-92 (101)
26 PRK02710 plastocyanin; Provisi 24.5 3.1E+02 0.0066 21.5 6.3 14 55-68 48-61 (119)
27 PF05991 NYN_YacP: YacP-like N 23.6 27 0.00058 29.4 0.0 10 134-143 2-11 (166)
28 PF01356 A_amylase_inhib: Alph 22.7 98 0.0021 22.7 2.8 37 28-67 17-53 (68)
29 PF07732 Cu-oxidase_3: Multico 21.9 1.5E+02 0.0033 23.3 4.1 51 25-77 35-94 (117)
30 cd00407 Urease_beta Urease bet 21.5 2E+02 0.0043 22.8 4.5 58 21-78 17-92 (101)
31 PHA02703 ORF007 dUTPase; Provi 21.4 2.9E+02 0.0063 23.4 5.9 28 55-82 43-76 (165)
32 TIGR02656 cyanin_plasto plasto 21.3 2.7E+02 0.0059 20.9 5.3 52 24-77 23-81 (99)
33 PF14874 PapD-like: Flagellar- 21.2 1.9E+02 0.004 21.4 4.3 47 22-68 20-69 (102)
34 PLN02547 dUTP pyrophosphatase 20.6 1.1E+02 0.0025 25.6 3.2 28 55-82 46-79 (157)
No 1
>cd09218 TLP-PA allergenic/antifungal thaumatin-like proteins: plant and animal homologs. This subfamily is represented by the thaumatin-like proteins (TLPs), Cherry Allergen Pru Av 2 TLP, Peach PpAZ44 TLP (a propylene-induced TLP in abscission), the Caenorhabditis elegans thaumatin family member (thn-6), and other plant and animal homologs. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Due to their inducible expression by environmental stresses such as pathogen/pest attack, drought and cold, plant TLPs are classified as the pathogenesis-related (PR) protein family 5 (PR5). Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3; Japanese cedar, Cry j3). TLPs are three-domain, crescent-fold structures with either an electronegative, ele
Probab=100.00 E-value=2e-85 Score=575.90 Aligned_cols=217 Identities=57% Similarity=1.160 Sum_probs=209.0
Q ss_pred EEEEEeCCCCcccceeecCCCCCCCCCCceEecCCCeEEEEcCCCCceeeeeccccccCCCCCcccccCCCCCCccccCC
Q 025745 27 QLILVNNCKETIWPGILGTAGHETPYNGGFVLCSGEQTVLEVPEKWSGRIWPRQGCCFDETTGKGSCQTGDCAGLRQCKG 106 (248)
Q Consensus 27 t~ti~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~~p~~WsGriwaRtgCs~d~~~g~~~C~TGdCgg~~~C~g 106 (248)
+|||+|||+||||||+++++|++++..+||+|+||++++|++|++|+|||||||+|++| +.|+++|+||||+|+++|+|
T Consensus 1 tfti~N~C~~tVWp~~~~~~g~~~l~~gGf~L~~g~s~~~~vp~~WsGriWaRTgC~~~-~~g~~~C~TGDCgg~l~C~g 79 (219)
T cd09218 1 TFTIYNKCPFTVWPGILGNAGHPQLGGGGFELAPGQSRTIDAPSGWSGRFWGRTGCSFD-SSGKGSCATGDCGGGLECNG 79 (219)
T ss_pred CEEEEECCCCCccceecCCCCCCCCCCCCEEcCCCCeEEEeCCCCcceeeeeccCCCCC-CCCccccccCCCCCeeecCC
Confidence 59999999999999999999999998999999999999999999999999999999999 88999999999999999999
Q ss_pred CCCCCCceeEEEEecCCCCCcceeeeeccCccccCceeccCCCCCCcCCccccccccccCCCCccccc-CCeeeccccch
Q 025745 107 LGGVPPATLVEMTLGTQASALHYYDVSLVDGFNVPVSMAPIGGGAGCGVAACEADLNICCPANLAVKK-QGKLVACKSAC 185 (248)
Q Consensus 107 ~g~~ppaTlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dl~~~CP~~l~v~~-~g~vv~C~S~C 185 (248)
.+++||+|||||+|++. +++|||||||||||||||+|+|+++.+.|+.++|.+|||..||.||||++ +|+||||||||
T Consensus 80 ~~g~pP~TlaEftl~~~-~~~d~YdvSlVdGfNlP~~i~P~~~~~~C~~~~C~~din~~CP~~L~v~~~~g~vv~C~SaC 158 (219)
T cd09218 80 AGGAPPATLAEFTLGGS-GGQDFYDVSLVDGYNLPVSITPQGGSGGCRTAGCVADLNAVCPAELQVKNSGGRVVACKSAC 158 (219)
T ss_pred CCCCCCceeEEEEeccC-CCCcceeeeeeccccCCEEEEecCCCCCCCCCcccCcccccCCHHHeeccCCCcEeeecCHH
Confidence 88889999999999886 67899999999999999999998766789999999999999999999964 68999999999
Q ss_pred hhcCCCCcccCCCCCCCCCCCCchhhHHHHhhCCCccccccCCCCCceeecC-CCeEEEec
Q 025745 186 VAAKSDRYCCTGEFANPRRCKPTVFSHLFKAICPRAYSYAYDDSTSLKTCRA-PRYVITFC 245 (248)
Q Consensus 186 ~~~~~~~~CC~g~~~~p~~C~~t~ys~~fK~~CP~AYsya~DD~tstftC~~-~~y~ItFC 245 (248)
.+|++|||||+|+|.+|++|+|+.||++||++||+||+|||||++|+|+|++ ++|+||||
T Consensus 159 ~~f~~~~~CC~g~~~~p~~C~pt~ys~~FK~~CP~Aysya~Dd~~s~~tC~~~~~Y~I~FC 219 (219)
T cd09218 159 LAFNTDEYCCRGAYGTPETCKPTTYSRLFKNACPQAYSYAYDDPTSTFTCSSGANYVITFC 219 (219)
T ss_pred HhhCCccceecCCCCCCCcCCCcchhHHHHhhCccccccCCCCCCcceEcCCCCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999997 99999999
No 2
>smart00205 THN Thaumatin family. The thaumatin family gathers proteins related to plant pathogenesis. The thaumatin family includes very basic members with extracellular and vacuolar localization. Thaumatin itsel is a potent sweet-tasting protein. Several members of this family display significant in vitro activity of inhibiting hyphal growth or spore germination of various fungi probably by a membrane permeabilizing mechanism.
Probab=100.00 E-value=1.1e-83 Score=564.69 Aligned_cols=216 Identities=52% Similarity=1.032 Sum_probs=208.2
Q ss_pred EEEEeCCCCcccceeecCCCCCCCCCCceEecCCCeEEEEcCCCCc-eeeeeccccccCCCCCcccccCCCCCCccccCC
Q 025745 28 LILVNNCKETIWPGILGTAGHETPYNGGFVLCSGEQTVLEVPEKWS-GRIWPRQGCCFDETTGKGSCQTGDCAGLRQCKG 106 (248)
Q Consensus 28 ~ti~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~~p~~Ws-GriwaRtgCs~d~~~g~~~C~TGdCgg~~~C~g 106 (248)
|||+|||+||||||++++ |++++..+||+|++|++++|.+|++|. |||||||+|++| ++|+++|+||||+|+++|++
T Consensus 1 fti~N~C~~tVWp~~~~~-g~~~l~~gGf~L~~g~s~~~~~p~~w~sGriW~RtgC~~d-~~G~~~C~TGdCgG~l~C~g 78 (218)
T smart00205 1 FEFVNNCPYTVWAAALPS-GKPQLSGGGFELNSGASWQLDAPPGTKMGRIWARTGCNFD-ASGRGRCATGDCGGVLQCNG 78 (218)
T ss_pred CEEEcCCCCceeceecCC-CCcccCCCcEecCCCCeEEEECCCCCccceEecccCCCcC-CCCccccccCCCCCeeecCC
Confidence 799999999999999999 999998899999999999999999996 999999999999 78999999999999999999
Q ss_pred CCCCCCceeEEEEecCCCCCcceeeeeccCccccCceeccCCCCCCcCCccccccccccCCCCcccccCCeeeccccchh
Q 025745 107 LGGVPPATLVEMTLGTQASALHYYDVSLVDGFNVPVSMAPIGGGAGCGVAACEADLNICCPANLAVKKQGKLVACKSACV 186 (248)
Q Consensus 107 ~g~~ppaTlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dl~~~CP~~l~v~~~g~vv~C~S~C~ 186 (248)
.+++||+|||||+|++. +++|||||||||||||||+|.|+++.+.|+.++|.+|||..||.|||++++|+||||+|+|.
T Consensus 79 ~gg~pP~TlaEftl~~~-~~~d~YdvSlVdGfNlP~~i~P~~~~~~C~~~~C~~d~~~~CP~~L~v~~~g~vv~C~SaC~ 157 (218)
T smart00205 79 WGGRPPATLAEFALNQF-GGLDFYDVSLVDGFNIPMSFTPTGGSGDCKGAGCTADLNAQCPAELQVPGGGSVVACNSACT 157 (218)
T ss_pred CCCCCCcceeEEEecCC-CCcceeeeEeeccccCCEEEEecCCCCCcCCCcCCCcccccCCHHHccccCCcccccccHhh
Confidence 88899999999999876 68899999999999999999998766779999999999999999999987789999999999
Q ss_pred hcCCCCcccCCCCCCCCCCCCchhhHHHHhhCCCccccccCCCCCceeecC-CCeEEEecC
Q 025745 187 AAKSDRYCCTGEFANPRRCKPTVFSHLFKAICPRAYSYAYDDSTSLKTCRA-PRYVITFCP 246 (248)
Q Consensus 187 ~~~~~~~CC~g~~~~p~~C~~t~ys~~fK~~CP~AYsya~DD~tstftC~~-~~y~ItFCP 246 (248)
+|++|||||+|.|++|++|+|+.|+++||++||+||+||+||.+++|+|++ ++|+|+|||
T Consensus 158 ~f~~~~yCC~g~~~~~~~C~pt~ys~~FK~~CP~Aysya~Dd~~st~tC~~~~~y~V~FCp 218 (218)
T smart00205 158 VFGTDQYCCTGGQNNPETCPPTNYSRIFKNACPDAYSYAYDDPTSTFTCTGGTNYKVTFCP 218 (218)
T ss_pred ccCCCcceecCCCCCCCCCCCcchhhHHhhhCCccccCccCCCCcceEccCCCCEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999 999999998
No 3
>cd09219 TLP-F thaumatin-like proteins: basidiomycete homologs. This subfamily is represented by Lentinula edodes TLG1, a thaumatin-like protein (TLP), as well as, other basidiomycete homologs. In general, TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. TLG1 TLP is involved in lentinan degradation and fruiting body senescence. TLG1 expressed in Escherichia coli and Aspergillus oryzae exhibited beta-1,3-glucanase activity and demonstrated lentinan degrading activity. TLG1 is proposed to be involved in lentinan and cell wall degradation during senescence following harvest and spore diffusion. TLPs are three-domain, crescent-fold structures with either an electronegative, electropositive, or neutral cleft occurring between domains I and II. TLG1 from Lentinula edodes contains the required acidic amino acids conserved in the appropriate positions to possess an electronegative cleft. TLPs within this subfamily contain 13 conserve
Probab=100.00 E-value=8e-82 Score=554.92 Aligned_cols=213 Identities=38% Similarity=0.807 Sum_probs=198.6
Q ss_pred EEEEeCCCCcccceeecCCCCC---CCCCCceEecCCCeEEEEcCCCCc-eeeeeccccccCCCCCcccccCCCCCCccc
Q 025745 28 LILVNNCKETIWPGILGTAGHE---TPYNGGFVLCSGEQTVLEVPEKWS-GRIWPRQGCCFDETTGKGSCQTGDCAGLRQ 103 (248)
Q Consensus 28 ~ti~N~C~~tVwp~~~~~~g~~---~~~~~g~~L~~G~s~s~~~p~~Ws-GriwaRtgCs~d~~~g~~~C~TGdCgg~~~ 103 (248)
|||+|||+||||||+++++|++ ++..+||+|+||++++|++|++|+ |||||||+|++|...|+++|+||||||+++
T Consensus 1 fti~N~C~~TVWPgi~~~~g~~~~~~~~~gGf~L~pg~s~~i~vp~~w~~GRiWgRTgC~~d~~~G~~~C~TGdCgg~l~ 80 (229)
T cd09219 1 FTVKNSCSSTIWPAMFTGGNFIDAVPDQATGWEAAAGGQVEFTVPDNWTAGRIWARTGCDFSDNPGPFSCLTGGCGGGLT 80 (229)
T ss_pred CEEEeCCCCCccceecCCCCCccccccCCCCEecCCCCeEEEECCCCCcccceeccCCCCCCCCCCCCCcccCCCCceee
Confidence 7999999999999999999988 677899999999999999999997 999999999998335899999999999999
Q ss_pred cCCCCCCCCceeEEEEecCCCCCcceeeeeccCccccCceeccCCCCCCcCCccccccccccCCCCcccc--cCCeeecc
Q 025745 104 CKGLGGVPPATLVEMTLGTQASALHYYDVSLVDGFNVPVSMAPIGGGAGCGVAACEADLNICCPANLAVK--KQGKLVAC 181 (248)
Q Consensus 104 C~g~g~~ppaTlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dl~~~CP~~l~v~--~~g~vv~C 181 (248)
|++ ++.||+|||||+|+.. ++|||||||||||||||+|.|.. .|+.++|.+|||..||.|||+. .+|+||||
T Consensus 81 C~~-~g~pP~TlaEftL~~~--~~D~YdVSlVDGfNlP~~i~P~~---~C~~~~C~~dln~~CP~~L~v~~~~~g~~vaC 154 (229)
T cd09219 81 CEN-SDQPPASLAEFTLIGG--KEDNYDISLVDGFNIPLNITNNI---TCPQPQCQVDLNVLCPALLRGPLDQKGVNLGC 154 (229)
T ss_pred cCC-CCCCCcceeeEEecCC--CCceeEEEEecccccceEeccCC---CCCCCcccCCCcccCCHHHccccCCCCcccee
Confidence 995 5679999999999974 78999999999999999999932 7999999999999999999995 46889999
Q ss_pred ccchhh-cCC--CCcccCCCCCCCCCCCC--chhhHHHHhhCCCccccccCCCC--CceeecC---CCeEEEecC
Q 025745 182 KSACVA-AKS--DRYCCTGEFANPRRCKP--TVFSHLFKAICPRAYSYAYDDST--SLKTCRA---PRYVITFCP 246 (248)
Q Consensus 182 ~S~C~~-~~~--~~~CC~g~~~~p~~C~~--t~ys~~fK~~CP~AYsya~DD~t--stftC~~---~~y~ItFCP 246 (248)
||+|.+ |+. |||||+|.|++|++|+| +.||++||++||+||||||||++ |+|||++ ++|+|||||
T Consensus 155 ~SaC~a~~~~~~~~yCC~g~~~~p~~C~p~~t~ys~~FK~~CP~AYSYa~Dd~ssts~ftC~~~~~~~Y~ItFCP 229 (229)
T cd09219 155 ISPCNRDKNHDDSPSCCTGSHNKPETCPQSGVGNYAYFKDNCPTAYAYAYDEKSHTALWTCGDSKSADYTVTFCP 229 (229)
T ss_pred cCHhhhhccCCCCcccccCCCCCcCCCCCCcccHhHHHHhhCcccccccccCccccccEEeCCCCCCCEEEEeCC
Confidence 999999 655 99999999999999999 88999999999999999999999 6799997 999999998
No 4
>PF00314 Thaumatin: Thaumatin family; InterPro: IPR001938 Thaumatin [] is an intensely sweet-tasting protein, 100 000 times sweeter than sucrose on a molar basis [] found in berries from Thaumatococcus daniellii, a tropical flowering plant known as Katemfe, it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein. Thaumatin consists of about 200 residues and contains 8 disulphide bonds. Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix []. Several stress-induced proteins of plants have been found to be related to thaumatins: A maize alpha-amylase/trypsin inhibitor Two tobacco pathogenesis-related proteins: PR-R major and minor forms,which are induced after infection with viruses Salt-induced protein NP24 from tomato Osmotin, a salt-induced protein from tobacco[] Osmotin-like proteins OSML13, OSML15 and OSML81 from potato [] P21, a leaf protein from soybean PWIR2, a leaf protein from wheat [] Zeamatin, a maize antifunal protein [] This protein is also referred to as pathogenesis-related group 5 (PR5), as many thaumatin-like proteins accumulate in plants in response to infection by a pathogen and possess antifungal activity []. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown [].; PDB: 3G7M_A 2I0W_A 1AUN_A 1Z3Q_A 1KWN_A 2OQN_A 1THW_A 1LY0_A 2D8O_A 1LR3_A ....
Probab=100.00 E-value=1.5e-79 Score=538.22 Aligned_cols=212 Identities=54% Similarity=1.087 Sum_probs=177.7
Q ss_pred eCCCCcccceeecCCCCCCCCCCceEecCCCeEEEEcCCCCceeeeeccccccCCCCCcccccCCCCCCccccCCCCCCC
Q 025745 32 NNCKETIWPGILGTAGHETPYNGGFVLCSGEQTVLEVPEKWSGRIWPRQGCCFDETTGKGSCQTGDCAGLRQCKGLGGVP 111 (248)
Q Consensus 32 N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~~p~~WsGriwaRtgCs~d~~~g~~~C~TGdCgg~~~C~g~g~~p 111 (248)
|||+|||||++++++|++++..+|++|++|++++|.+|++|+|||||||+|++| +.|+++|+||||+|+++|++.++.+
T Consensus 1 N~C~~tvWp~~~~~~~~~~~~~~g~~l~~g~s~~~~~p~~WsGriW~RTgC~~~-~~g~~~C~TGdCgg~~~C~~~~~~~ 79 (213)
T PF00314_consen 1 NNCPFTVWPAILPNAGSPPLSTGGFRLDPGQSWSLTVPAGWSGRIWARTGCSFD-GGGRGSCATGDCGGRLECNGAGGSP 79 (213)
T ss_dssp E-SSS-EEEEEETTTSSSEEEEEEEEE-TTEEEEEE--TTESEEEEEEEEEEEE-TTSBEEEEES-STTBSSSSS----S
T ss_pred CcCCCCeeeeecCCCCCCcCCCCCEEcCCCCeEEEecCccccceeeecCCCcCC-CCCCcccccCCCCcccccccccCcc
Confidence 999999999999999998888899999999999999999999999999999999 7899999999999999999877889
Q ss_pred CceeEEEEecCCCCCcceeeeeccCccccCceeccCCCCCCcCCccccccccccCCCCcccccCCeeeccccchhhcCCC
Q 025745 112 PATLVEMTLGTQASALHYYDVSLVDGFNVPVSMAPIGGGAGCGVAACEADLNICCPANLAVKKQGKLVACKSACVAAKSD 191 (248)
Q Consensus 112 paTlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dl~~~CP~~l~v~~~g~vv~C~S~C~~~~~~ 191 (248)
|+|||||+|++. +++|||||||||||||||+|+|.+ ...|+.++|.+||+..||.|||++..++||+|+|+|.+|++|
T Consensus 80 P~TlaEftl~~~-~~~d~YDVSlVdGfNlP~~i~p~~-~~~C~~~~C~~di~~~CP~~l~v~~~~~vv~C~SaC~~~~~~ 157 (213)
T PF00314_consen 80 PATLAEFTLNGS-NGQDFYDVSLVDGFNLPMSISPSG-GSNCRSPGCPADINSWCPSELQVKNSDGVVGCKSACDAFNTD 157 (213)
T ss_dssp S--EEEEEEEET-TTEEEEEEESTT-BSS-EEEEESS-SSSSSSEEE-S-HHHHE-CCCEEETTSSTTEE--HHHHH-SH
T ss_pred cceeEEEEeccC-CCcceEEEEeeeeecCChhhccCC-CCccccccCccccccccchhheeeccCceeeecccceeccCC
Confidence 999999999765 789999999999999999999995 579999999999999999999997665699999999999999
Q ss_pred CcccCCCCCCCCCCCCchhhHHHHhhCCCccccccCCCCCceeecC-CCeEEEecC
Q 025745 192 RYCCTGEFANPRRCKPTVFSHLFKAICPRAYSYAYDDSTSLKTCRA-PRYVITFCP 246 (248)
Q Consensus 192 ~~CC~g~~~~p~~C~~t~ys~~fK~~CP~AYsya~DD~tstftC~~-~~y~ItFCP 246 (248)
+|||+|.|..|++|+++.|+++||++||+||+|||||++|+|+|++ ++|+|||||
T Consensus 158 ~~CC~g~~~~~~~C~~~~ys~~fK~~CP~AYsya~DD~~s~ftC~~~~~y~ItFCP 213 (213)
T PF00314_consen 158 EYCCRGAYNTPDTCPPTNYSQFFKKACPDAYSYAYDDQTSTFTCPAGTNYTITFCP 213 (213)
T ss_dssp HHHTTCCS-TTSCS---HHHHHHHHH-TTSBSSTTSHTTT-EEEETT-EEEEEEST
T ss_pred ccccccccCCCcccccchhhhhhhhhCcccccccccCCCcceECCCCCCEEEEeCc
Confidence 9999999999999999999999999999999999999999999998 999999999
No 5
>cd09215 Thaumatin-like the sweet-tasting protein, thaumatin, and thaumatin-like proteins involved in host defense. This family is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii and thaumatin-like proteins (TLPs) involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs included in this family are such proteins as zeamatin, found in high concentrations in cereal seeds; osmotin, a salt-induced protein in osmotically stressed plants; and PpAZ44, a propylene-induced TLP in abscission of young fruit. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun
Probab=100.00 E-value=1.1e-59 Score=394.43 Aligned_cols=155 Identities=49% Similarity=1.036 Sum_probs=142.2
Q ss_pred EEEEeCCCCcccceeecCCCCCCCCCCceEecCCCeEEEEcCCCCceeeeeccccccCCC-CCcccccCCCCCCccccCC
Q 025745 28 LILVNNCKETIWPGILGTAGHETPYNGGFVLCSGEQTVLEVPEKWSGRIWPRQGCCFDET-TGKGSCQTGDCAGLRQCKG 106 (248)
Q Consensus 28 ~ti~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~~p~~WsGriwaRtgCs~d~~-~g~~~C~TGdCgg~~~C~g 106 (248)
|||+|||+||||||+++++|++ +..+||+|+||+++++.+|++|+|||||||+|++| + .|++.|+||||+|+++|++
T Consensus 1 ~ti~N~C~~tVWPg~~~~~g~~-~~~gGf~L~~g~s~~~~~p~~wsGriWgRTgC~~~-~~~g~~~C~TGdCgg~l~C~g 78 (157)
T cd09215 1 FTITNRCPYTIWPAIFTQVGKG-PYTGGFELNPGETKSFDVSAGWQGRIWARTNCSFN-ANSGGNACLTGDCNGGLNCQG 78 (157)
T ss_pred CEEEcCCCCCeeceecCCCCCC-CCCCCEecCCCCeeEEecCCCCeEeeecccccccC-CCCCCCCcccCCCCceeecCC
Confidence 7999999999999999999997 77899999999999999999999999999999999 5 7999999999999999998
Q ss_pred CCCCCCceeEEEEecCCCCCcceeeeeccCccccCceeccCCCCCCcCCccccccccccCCCCcccccCCeeeccccchh
Q 025745 107 LGGVPPATLVEMTLGTQASALHYYDVSLVDGFNVPVSMAPIGGGAGCGVAACEADLNICCPANLAVKKQGKLVACKSACV 186 (248)
Q Consensus 107 ~g~~ppaTlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dl~~~CP~~l~v~~~g~vv~C~S~C~ 186 (248)
++.||+|||||+|++. +++|||||||||||||||+|+|++ +.|+.++|.+
T Consensus 79 -~g~pp~TlaEftl~~~-~~~d~YdVSlVdG~NlP~~i~P~~--~~C~~~~C~~-------------------------- 128 (157)
T cd09215 79 -TGGPPATLAEFTLSGG-GGLDYYDISLVDGYNLPMSITPQP--GECPTPICAA-------------------------- 128 (157)
T ss_pred -CCCCCcceEEEEecCC-CCcceeEEEeeccccCCEEEecCC--CCCCCCcccc--------------------------
Confidence 5569999999999876 678999999999999999999975 2465545531
Q ss_pred hcCCCCcccCCCCCCCCCCCCchhhHHHHhhCCCccccccCCCCCceeecC-CCeEEEec
Q 025745 187 AAKSDRYCCTGEFANPRRCKPTVFSHLFKAICPRAYSYAYDDSTSLKTCRA-PRYVITFC 245 (248)
Q Consensus 187 ~~~~~~~CC~g~~~~p~~C~~t~ys~~fK~~CP~AYsya~DD~tstftC~~-~~y~ItFC 245 (248)
||+||+|||||++|+|+|++ ++|+||||
T Consensus 129 -------------------------------Cp~Aysya~Dd~~s~~tC~~~~~y~v~FC 157 (157)
T cd09215 129 -------------------------------CPDAYSYAYDDQTSTFTCPGGAGYEVVFC 157 (157)
T ss_pred -------------------------------CccccccCCCCCccceECCCCCCEEEEeC
Confidence 99999999999999999998 99999999
No 6
>cd09217 TLP-P thaumatin and allergenic/antifungal thaumatin-like proteins: plant homologs. This subfamily is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii, allergenic/antifungal Thaumatin-like proteins (TLPs), and related plant proteins. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs in this subfamily include such proteins as zeamatin, found in high concentrations in cereal seeds, and osmotin, a salt-induced protein in osmotically stressed plants. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3
Probab=100.00 E-value=9.5e-52 Score=344.90 Aligned_cols=149 Identities=51% Similarity=1.052 Sum_probs=132.9
Q ss_pred EEEEeCCCCcccceeecCCCCCCCCCCceEecCCCeEEEEcCCC-CceeeeeccccccCCCCCcccccCCCCCCccccCC
Q 025745 28 LILVNNCKETIWPGILGTAGHETPYNGGFVLCSGEQTVLEVPEK-WSGRIWPRQGCCFDETTGKGSCQTGDCAGLRQCKG 106 (248)
Q Consensus 28 ~ti~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~~p~~-WsGriwaRtgCs~d~~~g~~~C~TGdCgg~~~C~g 106 (248)
|+|+|||+||||||+++. .+||+|++|+++++++|++ |+|||||||+|++| +.|+++|+||||||+++|.+
T Consensus 1 ~~~~N~C~~tvWp~~~~~-------~gG~~L~~g~~~~~~~p~~~w~griW~RTgC~~~-~~g~~~C~TGdCgg~l~C~~ 72 (151)
T cd09217 1 FTITNNCGYTVWPAATPV-------GGGRQLNPGQSWTIDVPAGTAGGRIWGRTGCSFD-ASGRGSCQTGDCGGVLSCTG 72 (151)
T ss_pred CEEEeCCCCcccceEecC-------CCCEeCCCCCeEEEEcCCCCceEEEeeecCCCcC-CCCCCcccccCCCCeeecCC
Confidence 789999999999999873 4699999999999999997 99999999999999 88999999999999999995
Q ss_pred CCCCCCceeEEEEecCCCCCcceeeeeccCccccCceeccCCCCCCcCCccccccccccCCCCcccccCCeeeccccchh
Q 025745 107 LGGVPPATLVEMTLGTQASALHYYDVSLVDGFNVPVSMAPIGGGAGCGVAACEADLNICCPANLAVKKQGKLVACKSACV 186 (248)
Q Consensus 107 ~g~~ppaTlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dl~~~CP~~l~v~~~g~vv~C~S~C~ 186 (248)
++.||+||+||+|+. +++||||||+||||||||.|+|+++ .|+.++|..
T Consensus 73 -~g~pp~Tl~E~tl~~--~~~d~YdISlVdG~NlP~~i~P~~~--~C~~~~C~~-------------------------- 121 (151)
T cd09217 73 -SGKPPATLAEYTLNQ--SGQDFYDISLVDGFNVPMDFSPTGG--GCHAIPCAA-------------------------- 121 (151)
T ss_pred -CCCCCceeEEEEecC--CCCccEEEEeecccccceEEecCCC--CCCCCcCCC--------------------------
Confidence 567999999999976 4689999999999999999999742 355444432
Q ss_pred hcCCCCcccCCCCCCCCCCCCchhhHHHHhhCCCccccccCCCCCceeecC-CCeEEEecC
Q 025745 187 AAKSDRYCCTGEFANPRRCKPTVFSHLFKAICPRAYSYAYDDSTSLKTCRA-PRYVITFCP 246 (248)
Q Consensus 187 ~~~~~~~CC~g~~~~p~~C~~t~ys~~fK~~CP~AYsya~DD~tstftC~~-~~y~ItFCP 246 (248)
. ||+||+|++|| .++++|+. ++|+|||||
T Consensus 122 ---------------------d---------C~~ay~~~~D~-~~~~~C~~~~~~~v~fCp 151 (151)
T cd09217 122 ---------------------N---------CPDAYSYPKDP-TTTFTCPGGTNYRIVFCP 151 (151)
T ss_pred ---------------------C---------CchHhcCCCCC-CceEeCCCCCCEEEEeCC
Confidence 1 99999999995 79999999 999999998
No 7
>cd08961 GH64-TLP-SF glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins. This superfamily includes glycoside hydrolases of family 64 (GH64), these are mostly bacterial beta-1,3-glucanases which cleave long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers and are implicated in fungal cell wall degradation. Also included in this superfamily are thaumatin, the sweet-tasting protein from the African berry Thaumatococcus daniellii, and thaumatin-like proteins (TLPs) which are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Like GH64s, some TLPs also hydrolyze the beta-1,3-glucans of the type commonly found in fungal walls. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. Several members of the plant TLP
Probab=100.00 E-value=5.3e-51 Score=340.98 Aligned_cols=152 Identities=39% Similarity=0.670 Sum_probs=136.4
Q ss_pred EEEEeCCCCcccceeecCCCCCCCCCCceEecCCCeEEEEcCCCCceeeeeccccccCCCCCcccccCCCCCCccccCCC
Q 025745 28 LILVNNCKETIWPGILGTAGHETPYNGGFVLCSGEQTVLEVPEKWSGRIWPRQGCCFDETTGKGSCQTGDCAGLRQCKGL 107 (248)
Q Consensus 28 ~ti~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~~p~~WsGriwaRtgCs~d~~~g~~~C~TGdCgg~~~C~g~ 107 (248)
|||+|||+|||||++++.++++.+..+|++|+||++++|++|..|+||||+||+|+++ ..|++.|+||||++ +.|.+.
T Consensus 1 ~ti~NnC~~tVWp~i~~~~~~~~~~~gg~~L~pG~s~si~vP~~wsGRIW~RtgC~~~-~~g~g~C~TGdcgg-~~c~g~ 78 (153)
T cd08961 1 LTITNNCGYQVWIYNLGTELSSAPDASGPGLAPGRSTTIQIPKGFSGRIWFRTGCSMD-FSGTTGCLTQDPGV-VNPTDP 78 (153)
T ss_pred CEEEeCCCCcCcceECCCCCCCCccCcccccCCCCcEEEEecCCceEEEEEecCCccc-CCCCccccccCCCC-cccCCC
Confidence 7999999999999999998888887899999999999999999999999999999999 77899999999998 688777
Q ss_pred CCCCCceeEEEEecCCCCCcceeeeeccCccccCceeccCCCCCCcCCccccccccccCCCCcccccCCeeeccccchhh
Q 025745 108 GGVPPATLVEMTLGTQASALHYYDVSLVDGFNVPVSMAPIGGGAGCGVAACEADLNICCPANLAVKKQGKLVACKSACVA 187 (248)
Q Consensus 108 g~~ppaTlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~g~~~C~~~~C~~dl~~~CP~~l~v~~~g~vv~C~S~C~~ 187 (248)
++.||+|||||+|++. +++||||||+||||||||.|+|+.+.+
T Consensus 79 ~g~pp~TlaEfTl~~~-~~~dfydISlVDGfNlP~~i~p~~~~g------------------------------------ 121 (153)
T cd08961 79 NRDPPFTLAEFTLNDF-NSGDFIDSSLVDGFNAPMTVGPRRGDG------------------------------------ 121 (153)
T ss_pred CCCCCcceEEEEecCC-CCcceEEEEeecccCCCEEEEeccCCC------------------------------------
Confidence 7889999999999875 678999999999999999999964321
Q ss_pred cCCCCcccCCCCCCCCCCCCchhhHHHHhhCCCccccccCCCCCceeecC-CCeEEEe
Q 025745 188 AKSDRYCCTGEFANPRRCKPTVFSHLFKAICPRAYSYAYDDSTSLKTCRA-PRYVITF 244 (248)
Q Consensus 188 ~~~~~~CC~g~~~~p~~C~~t~ys~~fK~~CP~AYsya~DD~tstftC~~-~~y~ItF 244 (248)
.|++.. |||+|||||+.++|+|+. .+|.|||
T Consensus 122 ----------------~C~~~~----------~~~~~~~~~~~~~~~c~~~~~~~~~~ 153 (153)
T cd08961 122 ----------------TCLSTG----------DAYSYAFDDHESTFTCGGGRNYSLTF 153 (153)
T ss_pred ----------------Cccccc----------cccccCCCCccceEEcCCCCceEEeC
Confidence 122211 999999999999999999 9999998
No 8
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=97.64 E-value=0.00077 Score=56.88 Aligned_cols=47 Identities=26% Similarity=0.337 Sum_probs=36.4
Q ss_pred CCceeEEEEecCCCCCcceeeeeccCccc---cCceeccCCCCCCcCCccccc
Q 025745 111 PPATLVEMTLGTQASALHYYDVSLVDGFN---VPVSMAPIGGGAGCGVAACEA 160 (248)
Q Consensus 111 ppaTlaEftl~~~~~~~d~YDVSlVdG~N---lP~~i~p~~g~~~C~~~~C~~ 160 (248)
.|.|..|++|... +.+-|||+|.|.|.. -+|.|.|.+ ..|.++-|..
T Consensus 72 ~pqt~FaYtL~~d-~~~VwYDLSdvfGdPF~G~~v~v~ps~--~~Cp~I~Wp~ 121 (155)
T PF04681_consen 72 SPQTIFAYTLVDD-NNQVWYDLSDVFGDPFAGHKVTVNPSD--PSCPSIVWPN 121 (155)
T ss_pred CceeEEEEEecCC-CceEEEECccccCCCcCCCEEEEecCC--CCCCceECCC
Confidence 5899999999865 568999999999863 357777765 3687777654
No 9
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=95.49 E-value=0.077 Score=50.39 Aligned_cols=111 Identities=28% Similarity=0.384 Sum_probs=63.9
Q ss_pred EEEEEeCCCC--cccceeecCC---CC---------C---CCC----C----CceEe-cCCCeEEEEcCCCCceeeeecc
Q 025745 27 QLILVNNCKE--TIWPGILGTA---GH---------E---TPY----N----GGFVL-CSGEQTVLEVPEKWSGRIWPRQ 80 (248)
Q Consensus 27 t~ti~N~C~~--tVwp~~~~~~---g~---------~---~~~----~----~g~~L-~~G~s~s~~~p~~WsGriwaRt 80 (248)
.|+|+||=+. +||..+++.+ ++ . ... . =...| ++|++.++.+|. ++||||=-.
T Consensus 2 pl~l~Nns~~~~~vy~yi~G~~~~~~~~v~~~adG~~~~p~~~~~~~~~~~d~aipl~~~G~~~tvtiP~-~sgRiyfS~ 80 (353)
T cd09216 2 PLTITNNSGRNNQIYLYVVGTDLQTGRQGWVDADGAAHPVPPGDNVPDGAADYAIPLPSPGDTTTVLPPR-MSGRIYFSL 80 (353)
T ss_pred cEEEEeCCCCCCcEEEEEEeeeCCCCcEEEEeCCCCEecCCcccCCCCCccceeeECCCCCCceEEcccc-cCcEEEEEc
Confidence 4788998877 8888776531 21 0 000 0 01233 267889999998 999999322
Q ss_pred ccccCCCCCcccccCCCCCCccccCCCCC-CCC----ceeEEEEecCCCCCcceeeeeccCccccCceeccCC
Q 025745 81 GCCFDETTGKGSCQTGDCAGLRQCKGLGG-VPP----ATLVEMTLGTQASALHYYDVSLVDGFNVPVSMAPIG 148 (248)
Q Consensus 81 gCs~d~~~g~~~C~TGdCgg~~~C~g~g~-~pp----aTlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~ 148 (248)
+= .=.|.-..|. +-.+-..... -|- -..+|||++. ..-|-++|.||-|.+||.|+-.+
T Consensus 81 g~-----~L~F~~~~~~--~lv~Ps~~NpsDpN~~~~~~f~EfT~n~---~gl~~N~T~VD~~~~P~~l~l~~ 143 (353)
T cd09216 81 GS-----KLRFKVVTNP--ALVQPAGWNPSDPNFNILHDWVEFTFND---AGLFCNTTQVDMFSAPLAIGLRG 143 (353)
T ss_pred CC-----eeEEEecCCC--cccCCCCCCCCCCCccceEEEEEEEecC---CceEecccceeeeccceEEEEec
Confidence 10 0112211110 1111111110 111 2448999985 34689999999999999998664
No 10
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=95.36 E-value=0.014 Score=54.66 Aligned_cols=32 Identities=25% Similarity=0.524 Sum_probs=27.5
Q ss_pred eeEEEEecCCCCCcceeeeeccCccccCceeccCC
Q 025745 114 TLVEMTLGTQASALHYYDVSLVDGFNVPVSMAPIG 148 (248)
Q Consensus 114 TlaEftl~~~~~~~d~YDVSlVdG~NlP~~i~p~~ 148 (248)
..+|||++. ..-|-++|.||-|.+||.|+-.+
T Consensus 124 df~EFT~n~---~~l~~N~T~VD~~~lPl~l~l~~ 155 (319)
T cd09214 124 DFIEFTYNA---TGLWGNTTRVDAFGIPLTLRLIG 155 (319)
T ss_pred EEEEEEecC---CceEecccceeeeccCeEEEEEc
Confidence 348999985 57899999999999999998765
No 11
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=91.38 E-value=0.55 Score=44.94 Aligned_cols=79 Identities=20% Similarity=0.223 Sum_probs=48.3
Q ss_pred CCCeEEEEcCCCCceeeeeccccccCCCCCcccccCCCCC-CccccCCCCC-CCC----ceeEEEEecCCCCCcceeeee
Q 025745 60 SGEQTVLEVPEKWSGRIWPRQGCCFDETTGKGSCQTGDCA-GLRQCKGLGG-VPP----ATLVEMTLGTQASALHYYDVS 133 (248)
Q Consensus 60 ~G~s~s~~~p~~WsGriwaRtgCs~d~~~g~~~C~TGdCg-g~~~C~g~g~-~pp----aTlaEftl~~~~~~~d~YDVS 133 (248)
+|++.++++|.-++||||=-.+= .=.|. ...+ | +.++-.-... -|- -..+|||++. .+-|=++|
T Consensus 62 ~G~~~titiP~i~sgRIyfS~g~-----~L~F~-~~~~-g~glv~Ps~~NpsDpN~~~~~~f~EfT~n~---~~l~~N~S 131 (369)
T cd09220 62 PGSTTTVTIPILAGGRIWFSVDD-----KLTFL-LNPG-GPALVEPSVTNPSDPNYNKNWGFCEFTYNS---GQLYANIS 131 (369)
T ss_pred CCCceeEEcccccceEEEEEcCC-----eEEEE-ecCC-CccccCCCcCCCCCCCccceEEEEEEEecC---CceEeccc
Confidence 57889999999899999932211 00111 1111 2 2222111110 111 2448999986 45789999
Q ss_pred ccCccccCceeccCC
Q 025745 134 LVDGFNVPVSMAPIG 148 (248)
Q Consensus 134 lVdG~NlP~~i~p~~ 148 (248)
.||-|.+||.|+-.+
T Consensus 132 ~VD~~~~P~~l~l~~ 146 (369)
T cd09220 132 YVDFVGLPLGLSLTT 146 (369)
T ss_pred ceeeeccCeEEEEEc
Confidence 999999999997654
No 12
>PF06282 DUF1036: Protein of unknown function (DUF1036); InterPro: IPR009380 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=72.89 E-value=5.1 Score=32.03 Aligned_cols=42 Identities=17% Similarity=0.090 Sum_probs=33.8
Q ss_pred ceEEEEEeCCCCcccceeecCCCCCCCCCCceEecCCCeEEE
Q 025745 25 GTQLILVNNCKETIWPGILGTAGHETPYNGGFVLCSGEQTVL 66 (248)
Q Consensus 25 ~~t~ti~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~ 66 (248)
.+-|+|-|+-++.|++++.-..+..-...|.+.|+||+-.++
T Consensus 3 ~a~~~vCN~T~~~v~vAigy~~~~~W~seGWw~i~pg~C~~v 44 (115)
T PF06282_consen 3 HAGLRVCNRTSSPVGVAIGYRDGGGWVSEGWWRIDPGECATV 44 (115)
T ss_pred cCCcEEecCCCCeEEEEEEEEcCCCcEEeeeEEeCCCceEEe
Confidence 456899999999999999765555555677899999997766
No 13
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=69.58 E-value=7.6 Score=32.05 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=38.8
Q ss_pred cceEEEEEeCCCCcccceeecCCCCCCCCCCceEecCCCeEEEEcCCCCceeeeec
Q 025745 24 DGTQLILVNNCKETIWPGILGTAGHETPYNGGFVLCSGEQTVLEVPEKWSGRIWPR 79 (248)
Q Consensus 24 ~~~t~ti~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~~p~~WsGriwaR 79 (248)
....++|+|+.+.+|-+-+.-..|.+... ..|+||+...++ .+.|..|=-
T Consensus 7 ~~~~v~F~N~t~~~v~~~Wid~~G~~~~Y---~~l~pg~~~~~~---Ty~~H~W~~ 56 (141)
T cd05468 7 VPSTVRFVNRTDRPVELYWIDYDGKPVSY---GTLQPGETVRQN---TYVGHPWLF 56 (141)
T ss_pred ceEEEEEEeCCCCeEEEEEECCCCCEEEe---eeeCCCCEEeec---ccCCCcEEE
Confidence 35789999999999999999887876543 479999987654 456777743
No 14
>PF01847 VHL: von Hippel-Lindau disease tumour suppressor protein; InterPro: IPR022772 Von Hippel-Lindau disease tumor suppressor (VHL) has two domains: a roughly 100-residue N-terminal domain rich in beta sheet (beta domain) and a smaller alpha-helical domain (alpha domain), held together by two linkers and a polar interface. A large portion of the alpha domain surface, and a small portion of the beta domain, interact with ElonginC. About half of the tumorigenic mutations map to the alpha domain and its residues that contact ElonginC. The remaining mutations map to the beta domain, and significantly, to a beta domain surface patch uninvolved in ElonginC binding. This suggests that two intact macromolecular binding sites may be required for the tumor suppressor effects of VHL []. This entry represents both beta and alpha domains of VHL.; PDB: 3ZRF_L 3ZRC_C 1LM8_V 1LQB_C 1VCB_F.
Probab=58.78 E-value=9.2 Score=32.46 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=31.2
Q ss_pred ccceEEEEEeCCCCcccceeecCCCCCCCCCCceEecCCCeEEEEcCCCCceeee
Q 025745 23 ADGTQLILVNNCKETIWPGILGTAGHETPYNGGFVLCSGEQTVLEVPEKWSGRIW 77 (248)
Q Consensus 23 a~~~t~ti~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~~p~~WsGriw 77 (248)
.....++|+|+++.+|-+-+....|.+... ..|+||+...++ .+.|..|
T Consensus 12 ~~~s~V~F~N~s~r~V~v~Wldy~G~~~~Y---~~L~Pg~~~~~~---TY~tHpW 60 (156)
T PF01847_consen 12 REPSFVRFVNRSPRTVDVYWLDYDGKPVPY---GTLKPGQGRRQN---TYVTHPW 60 (156)
T ss_dssp -SEEEEEEEE-SSS-EEEEEE-TTS-EEE------B-TTEEEEEE---EETT-EE
T ss_pred CCceEEEEEECCCCEEEEEEEcCCCcEeec---cccCCCCeEEcc---cccCCcE
Confidence 345789999999999988888888877654 469999988876 3455666
No 15
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=57.35 E-value=9.6 Score=36.61 Aligned_cols=22 Identities=32% Similarity=0.736 Sum_probs=19.9
Q ss_pred chhhHHHHhhCC--CccccccCCC
Q 025745 208 TVFSHLFKAICP--RAYSYAYDDS 229 (248)
Q Consensus 208 t~ys~~fK~~CP--~AYsya~DD~ 229 (248)
+.|++++++.-+ .+|.|||||-
T Consensus 321 NhYar~vH~~~~dg~gYaFpYDDV 344 (369)
T cd09220 321 NHYSRIVHENNPDGRGYAFPYDDV 344 (369)
T ss_pred hHHHHHHHHhccCCCeeccccccc
Confidence 579999999988 7899999996
No 16
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=49.22 E-value=12 Score=29.00 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=6.6
Q ss_pred HHHHHHHhhc-ccceEE
Q 025745 13 FFLCLFGISS-ADGTQL 28 (248)
Q Consensus 13 ~~~~~~~~~~-a~~~t~ 28 (248)
||+++|++++ +.++..
T Consensus 12 ~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 12 LLAALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHHHHhhhhhHHh
Confidence 3334444433 344444
No 17
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=47.96 E-value=9.8 Score=36.33 Aligned_cols=22 Identities=23% Similarity=0.617 Sum_probs=19.4
Q ss_pred chhhHHHHhhCC--CccccccCCC
Q 025745 208 TVFSHLFKAICP--RAYSYAYDDS 229 (248)
Q Consensus 208 t~ys~~fK~~CP--~AYsya~DD~ 229 (248)
+.|++++++.=. .||.|||||-
T Consensus 310 NhYar~vH~~~~dgk~YaF~YDDV 333 (353)
T cd09216 310 NHYAKVVHEAMADGKAYGFAFDDV 333 (353)
T ss_pred hHHHHHHHHhccCCCeeecCcccc
Confidence 579999999987 6899999995
No 18
>PHA03094 dUTPase; Provisional
Probab=43.50 E-value=26 Score=28.93 Aligned_cols=28 Identities=32% Similarity=0.580 Sum_probs=23.7
Q ss_pred ceEecCCCeEE------EEcCCCCceeeeecccc
Q 025745 55 GFVLCSGEQTV------LEVPEKWSGRIWPRQGC 82 (248)
Q Consensus 55 g~~L~~G~s~s------~~~p~~WsGriwaRtgC 82 (248)
.+.|.||+... +.+|.+|.|.|++|.+-
T Consensus 35 ~~~i~P~~~~lv~Tg~~i~ip~g~~g~i~~RSsl 68 (144)
T PHA03094 35 DYTVPPKERILVKTDISLSIPKFCYGRIAPRSGL 68 (144)
T ss_pred CeEECCCCEEEEEcCeEEEcCCCEEEEEEccccc
Confidence 47899999876 78999999999999754
No 19
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=34.71 E-value=83 Score=26.05 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=19.7
Q ss_pred ceEecCCCeEEEEcCCCCceeee
Q 025745 55 GFVLCSGEQTVLEVPEKWSGRIW 77 (248)
Q Consensus 55 g~~L~~G~s~s~~~p~~WsGriw 77 (248)
...|+||++.++.++..=.|++|
T Consensus 93 s~~I~pGet~TitF~adKpG~Y~ 115 (135)
T TIGR03096 93 SEVIKAGETKTISFKADKAGAFT 115 (135)
T ss_pred ceEECCCCeEEEEEECCCCEEEE
Confidence 35699999999999888889987
No 20
>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.
Probab=34.04 E-value=35 Score=28.05 Aligned_cols=39 Identities=28% Similarity=0.658 Sum_probs=23.3
Q ss_pred CcccccCCCCCCccccCCCCCCCCceeEEEEecCCCCCcceeeeec
Q 025745 89 GKGSCQTGDCAGLRQCKGLGGVPPATLVEMTLGTQASALHYYDVSL 134 (248)
Q Consensus 89 g~~~C~TGdCgg~~~C~g~g~~ppaTlaEftl~~~~~~~d~YDVSl 134 (248)
|.+.|+-|||||.|.|.- --+.=.|.++. +-..|=||.-
T Consensus 83 g~Gp~~PGdCGg~L~C~H------GViGi~Tagg~-g~VaF~dir~ 121 (127)
T PF00947_consen 83 GEGPAEPGDCGGILRCKH------GVIGIVTAGGE-GHVAFADIRD 121 (127)
T ss_dssp EE-SSSTT-TCSEEEETT------CEEEEEEEEET-TEEEEEECCC
T ss_pred ecccCCCCCCCceeEeCC------CeEEEEEeCCC-ceEEEEechh
Confidence 568899999999999973 13344455443 3345555543
No 21
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=29.87 E-value=59 Score=23.10 Aligned_cols=22 Identities=41% Similarity=0.753 Sum_probs=17.2
Q ss_pred eEecCCCeEEEEcCCCC-----ceeee
Q 025745 56 FVLCSGEQTVLEVPEKW-----SGRIW 77 (248)
Q Consensus 56 ~~L~~G~s~s~~~p~~W-----sGriw 77 (248)
|+|.+|+..++...... +|++|
T Consensus 2 ~~L~~g~~~~lr~~~~~~l~v~~G~vW 28 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQRLRVESGRVW 28 (63)
T ss_pred EEeCCCceEEeEcCCCcEEEEccccEE
Confidence 67888888888877654 48888
No 22
>PF13978 DUF4223: Protein of unknown function (DUF4223)
Probab=26.99 E-value=69 Score=22.43 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=16.1
Q ss_pred HHHhhcccceEEEEEeCCCCcc
Q 025745 17 LFGISSADGTQLILVNNCKETI 38 (248)
Q Consensus 17 ~~~~~~a~~~t~ti~N~C~~tV 38 (248)
+...++..+...+-.|+|+|+-
T Consensus 14 l~~Lt~CTG~v~Nk~knCsYDY 35 (56)
T PF13978_consen 14 LATLTACTGHVENKEKNCSYDY 35 (56)
T ss_pred HHHHhhccceeeccCCCCccee
Confidence 3334566788888999999874
No 23
>cd07557 trimeric_dUTPase Trimeric dUTP diphosphatases. Trimeric dUTP diphosphatases, or dUTPases, are the most common family of dUTPase, found in bacteria, eukaryotes, and archaea. They catalyze the hydrolysis of the dUTP-Mg complex (dUTP-Mg) into dUMP and pyrophosphate. This reaction is crucial for the preservation of chromosomal integrity as it removes dUTP and therefore reduces the cellular dUTP/dTTP ratio, and prevents dUTP from being incorporated into DNA. It also provides dUMP as the precursor for dTTP synthesis via the thymidylate synthase pathway. dUTPases are homotrimeric, except some monomeric viral dUTPases, which have been shown to mimic a trimer. Active sites are located at the subunit interface.
Probab=26.07 E-value=89 Score=22.93 Aligned_cols=28 Identities=39% Similarity=0.790 Sum_probs=20.7
Q ss_pred ceEecCCCe------EEEEcCCCCceeeeecccc
Q 025745 55 GFVLCSGEQ------TVLEVPEKWSGRIWPRQGC 82 (248)
Q Consensus 55 g~~L~~G~s------~s~~~p~~WsGriwaRtgC 82 (248)
.+.|+|+++ ..+.+|.++.|.|++|.+-
T Consensus 13 ~~~i~P~~~~~v~t~~~i~~p~~~~~~i~~RSs~ 46 (92)
T cd07557 13 GIVLPPGETVLVPTGEAIELPEGYVGLVFPRSSL 46 (92)
T ss_pred CEEEcCCCEEEEEEeEEEEcCCCeEEEEEcCchh
Confidence 367777774 3456788999999998643
No 24
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=25.56 E-value=74 Score=24.37 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=19.7
Q ss_pred eEecCCCeEEEEcCCCCceeeeeccc
Q 025745 56 FVLCSGEQTVLEVPEKWSGRIWPRQG 81 (248)
Q Consensus 56 ~~L~~G~s~s~~~p~~WsGriwaRtg 81 (248)
..|++|++.++.+|.+|..-++...|
T Consensus 4 i~l~~g~~~~~~~~~~~~~~iyv~~G 29 (104)
T PF05726_consen 4 IKLEPGASFTLPLPPGHNAFIYVLEG 29 (104)
T ss_dssp EEE-TT-EEEEEEETT-EEEEEEEES
T ss_pred EEECCCCEEEeecCCCCEEEEEEEEC
Confidence 57899999999999999988887654
No 25
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=24.71 E-value=1.7e+02 Score=23.20 Aligned_cols=58 Identities=17% Similarity=0.180 Sum_probs=37.5
Q ss_pred hcccceEEEEEeCCCCcccceeec-----CC----------CCC-C-CCCCceEecCCCeEEEEcCC-CCceeeee
Q 025745 21 SSADGTQLILVNNCKETIWPGILG-----TA----------GHE-T-PYNGGFVLCSGEQTVLEVPE-KWSGRIWP 78 (248)
Q Consensus 21 ~~a~~~t~ti~N~C~~tVwp~~~~-----~~----------g~~-~-~~~~g~~L~~G~s~s~~~p~-~WsGriwa 78 (248)
++-...++.|+|.-.-+|++|..- |. |.- . ++.+..+.+||+++++++-+ .=..+++|
T Consensus 17 ~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G 92 (101)
T TIGR00192 17 EGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVAIGGNRRIYG 92 (101)
T ss_pred CCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEEccCceEEEc
Confidence 345678999999999999998731 11 110 1 13455778899999988542 22345554
No 26
>PRK02710 plastocyanin; Provisional
Probab=24.52 E-value=3.1e+02 Score=21.49 Aligned_cols=14 Identities=7% Similarity=0.117 Sum_probs=9.9
Q ss_pred ceEecCCCeEEEEc
Q 025745 55 GFVLCSGEQTVLEV 68 (248)
Q Consensus 55 g~~L~~G~s~s~~~ 68 (248)
-.++++|++.++..
T Consensus 48 ~i~v~~Gd~V~~~N 61 (119)
T PRK02710 48 TLTIKAGDTVKWVN 61 (119)
T ss_pred EEEEcCCCEEEEEE
Confidence 47788888776653
No 27
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=23.59 E-value=27 Score=29.42 Aligned_cols=10 Identities=40% Similarity=0.853 Sum_probs=8.0
Q ss_pred ccCccccCce
Q 025745 134 LVDGFNVPVS 143 (248)
Q Consensus 134 lVdG~NlP~~ 143 (248)
+||||||=-.
T Consensus 2 lIDGYNli~~ 11 (166)
T PF05991_consen 2 LIDGYNLIHA 11 (166)
T ss_pred eEcchhhhCC
Confidence 6899998655
No 28
>PF01356 A_amylase_inhib: Alpha amylase inhibitor; InterPro: IPR000833 Alpha-amylase inhibitor inhibits mammalian alpha-amylases specifically, by forming a tight stoichiometric 1:1 complex with alpha-amylase. The inhibitor has no action on plant and microbial alpha amylases. A crystal structure has been determined for tendamistat, the 74-amino acid inhibitor produced by Streptomyces tendae that targets a wide range of mammalian alpha-amylases []. The binding of tendamistat to alpha-amylase leads to the steric blockage of the active site of the enzyme. The crystal structure of tendamistat revealed an immunoglobulin-like fold that could potentially adopt multiple conformations. Such molecular flexibility could enable an induced-fit type of binding that would both optimise binding and allow broad target specificity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0015066 alpha-amylase inhibitor activity; PDB: 2KER_A 3AIT_A 1BVN_T 1HOE_A 4AIT_A 2AIT_A 1OK0_A.
Probab=22.69 E-value=98 Score=22.67 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=22.5
Q ss_pred EEEEeCCCCcccceeecCCCCCCCCCCceEecCCCeEEEE
Q 025745 28 LILVNNCKETIWPGILGTAGHETPYNGGFVLCSGEQTVLE 67 (248)
Q Consensus 28 ~ti~N~C~~tVwp~~~~~~g~~~~~~~g~~L~~G~s~s~~ 67 (248)
-.+.|+|+.++-+-+.=.+|...+ -..++||+-.++-
T Consensus 17 T~v~N~Ca~tvsVtV~Y~dG~~~P---Crv~~PG~~~Tf~ 53 (68)
T PF01356_consen 17 TDVTNGCADTVSVTVEYTDGQEVP---CRVIPPGDIATFP 53 (68)
T ss_dssp EEEEE-SSS-EEEEEEETTS-CEE---EEEE-TTEEEEEE
T ss_pred EEeeCCCcccEEEEEEEeCCCcce---eEEeCCCCEEEec
Confidence 458999999998877554454322 3678899877654
No 29
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=21.94 E-value=1.5e+02 Score=23.30 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=33.1
Q ss_pred ceEEEEEeCCCCcccceeecC--------CCCCCCCCCceEecCCCeEEEEcCCCC-ceeee
Q 025745 25 GTQLILVNNCKETIWPGILGT--------AGHETPYNGGFVLCSGEQTVLEVPEKW-SGRIW 77 (248)
Q Consensus 25 ~~t~ti~N~C~~tVwp~~~~~--------~g~~~~~~~g~~L~~G~s~s~~~p~~W-sGriw 77 (248)
...|+|+|+-.+++-+-+.+. +|.+. .....+.||+++++.++..= .|.+|
T Consensus 35 ~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~--~~~~~i~pG~~~~Y~~~~~~~~Gt~w 94 (117)
T PF07732_consen 35 TVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPG--VTQCPIAPGESFTYEFTANQQAGTYW 94 (117)
T ss_dssp EEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTT--TSGSSBSTTEEEEEEEEESSCSEEEE
T ss_pred eeEEEEEeccccccccccceeeeeeeeecCCccc--ccceeEEeecceeeeEeeecccccee
Confidence 468999999988765544321 11111 12256889998888876554 68888
No 30
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=21.46 E-value=2e+02 Score=22.77 Aligned_cols=58 Identities=17% Similarity=0.207 Sum_probs=37.4
Q ss_pred hcccceEEEEEeCCCCcccceeec-----CC----------CCC--CCCCCceEecCCCeEEEEcCC-CCceeeee
Q 025745 21 SSADGTQLILVNNCKETIWPGILG-----TA----------GHE--TPYNGGFVLCSGEQTVLEVPE-KWSGRIWP 78 (248)
Q Consensus 21 ~~a~~~t~ti~N~C~~tVwp~~~~-----~~----------g~~--~~~~~g~~L~~G~s~s~~~p~-~WsGriwa 78 (248)
+.-...+++|+|.-.-+|++|..- |. |.- -++.+..+.+||+++++++-+ .=..+|+|
T Consensus 17 ~gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~~G~r~v~G 92 (101)
T cd00407 17 AGREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELVPIGGKRRVYG 92 (101)
T ss_pred CCCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEEEccCceEEEc
Confidence 345578999999999999998731 11 110 113455778899999988542 22345554
No 31
>PHA02703 ORF007 dUTPase; Provisional
Probab=21.37 E-value=2.9e+02 Score=23.40 Aligned_cols=28 Identities=29% Similarity=0.586 Sum_probs=22.7
Q ss_pred ceEecCCCe------EEEEcCCCCceeeeecccc
Q 025745 55 GFVLCSGEQ------TVLEVPEKWSGRIWPRQGC 82 (248)
Q Consensus 55 g~~L~~G~s------~s~~~p~~WsGriwaRtgC 82 (248)
...|+||+. ..+.+|++|.|.|++|.+-
T Consensus 43 d~vi~P~~~~lv~TGi~i~iP~g~~g~i~~RSsl 76 (165)
T PHA02703 43 DCIVPAGCRCVVFTDLLIKLPDGCYGRIAPRSGL 76 (165)
T ss_pred CeEECCCCEEEEeCCeEEEcCCCeEEEEECCccc
Confidence 468899986 3567899999999999754
No 32
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=21.31 E-value=2.7e+02 Score=20.93 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=28.2
Q ss_pred cceEEEEEeCC--CCcccceeec-CCCC----CCCCCCceEecCCCeEEEEcCCCCceeee
Q 025745 24 DGTQLILVNNC--KETIWPGILG-TAGH----ETPYNGGFVLCSGEQTVLEVPEKWSGRIW 77 (248)
Q Consensus 24 ~~~t~ti~N~C--~~tVwp~~~~-~~g~----~~~~~~g~~L~~G~s~s~~~p~~WsGriw 77 (248)
.+.+|+++|+= .+++-..... ..+. +.+......|.||+++++.+.. .|+++
T Consensus 23 ~G~~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~--~G~y~ 81 (99)
T TIGR02656 23 AGDTVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFST--PGTYT 81 (99)
T ss_pred CCCEEEEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCC--CEEEE
Confidence 45678999973 3443321110 0010 1111123467899999998876 67763
No 33
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=21.20 E-value=1.9e+02 Score=21.44 Aligned_cols=47 Identities=17% Similarity=0.018 Sum_probs=29.4
Q ss_pred cccceEEEEEeCCCCcccceeecCC-CCCCC--CCCceEecCCCeEEEEc
Q 025745 22 SADGTQLILVNNCKETIWPGILGTA-GHETP--YNGGFVLCSGEQTVLEV 68 (248)
Q Consensus 22 ~a~~~t~ti~N~C~~tVwp~~~~~~-g~~~~--~~~g~~L~~G~s~s~~~ 68 (248)
.....+|+|.|....+.---+.... ....+ ......|+||++.++.+
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V 69 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEV 69 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEE
Confidence 3457899999999887654443221 11111 12234699999888876
No 34
>PLN02547 dUTP pyrophosphatase
Probab=20.57 E-value=1.1e+02 Score=25.61 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=22.1
Q ss_pred ceEecCCCeE------EEEcCCCCceeeeecccc
Q 025745 55 GFVLCSGEQT------VLEVPEKWSGRIWPRQGC 82 (248)
Q Consensus 55 g~~L~~G~s~------s~~~p~~WsGriwaRtgC 82 (248)
.+.|.|++.. .+.+|.+|.|.|++|.+-
T Consensus 46 d~~i~P~~~~li~tgi~v~iP~g~~g~i~~RSgl 79 (157)
T PLN02547 46 DTVVPARGKALVPTDLSIAIPEGTYARIAPRSGL 79 (157)
T ss_pred CeEECCCCEEEEEeceEEEcCCCeEEEEEccccc
Confidence 4678888864 567899999999999753
Done!