Query 025746
Match_columns 248
No_of_seqs 142 out of 343
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 16:42:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025746.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025746hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4i95_A Putative uncharacterize 81.7 14 0.00047 30.2 10.0 79 146-234 11-89 (142)
2 4gzv_A Hypothetical protein; A 74.5 27 0.00091 28.6 9.7 70 145-224 10-80 (142)
3 2a6s_A Toxin YOEB; YEFM, antit 38.0 94 0.0032 21.2 6.5 20 118-138 21-40 (84)
4 1z8m_A Conserved hypothetical 33.3 26 0.00091 24.4 2.6 17 122-138 25-41 (88)
5 3oei_C RELK (toxin RV3358); to 31.2 64 0.0022 24.1 4.5 19 118-137 33-51 (96)
6 2kvu_A MKL/myocardin-like prot 27.9 82 0.0028 23.0 4.4 41 92-138 27-67 (75)
7 4fxi_A MRNA interferase RELE; 20.2 1.5E+02 0.0052 21.7 4.8 21 117-138 19-39 (95)
8 3p42_A Predicted protein; beta 17.8 1.1E+02 0.0038 26.3 4.0 66 93-161 51-129 (236)
9 3bpq_B Toxin RELE3; protein to 17.3 2.4E+02 0.0081 18.7 5.5 21 118-138 18-38 (88)
10 2khe_A Toxin RELE, toxin-like 15.2 1.2E+02 0.0041 20.2 3.0 20 118-137 20-41 (89)
No 1
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=81.67 E-value=14 Score=30.22 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=51.6
Q ss_pred ccCcEEEEEEeccCCcccccccCCCCceeecceEEEEeCCCceEEEEEEeecCceeEEEEEEEEEEEeCCCeEEEEEEee
Q 025746 146 LLNAKWILVYTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFEEG 225 (248)
Q Consensus 146 lL~G~W~L~YTS~~~~l~ll~~g~lP~v~vG~I~Q~ID~~~~~v~NvV~f~~Pl~~gsv~v~Asfev~s~~Rv~V~Fe~a 225 (248)
-|.|.|+|..-.+.+.. ..-.++-+..+-+|. ++|++.|.+-+.+ ..+.+...+.++..|+.......++.
T Consensus 11 ~L~GvWQ~C~y~s~~pd------~~g~L~psn~lKIlS-dDgtF~Ni~m~~~--~~aiIt~~GtY~~~SD~~Y~E~IeKn 81 (142)
T 4i95_A 11 HLQGIWQLCHYVSENPD------IPGVLKPSNTFKVLS-DDGRIVNFTIRPG--TDAIITGYGTYRQISAAAYKESIEKN 81 (142)
T ss_dssp SCCEEEEEEEEECSSTT------SCCEEEEEEEEEEEC-TTSEEEEEECCTT--SCCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred cceeEeEEEEEecCCCC------CceEeccCccEEEEc-CCCcEEEEEEecC--CCcEEEEeEEEEecCCcceeeeeccc
Confidence 49999999866554421 111234556777775 5669999998842 34567778888888887766655554
Q ss_pred EEcCCcccc
Q 025746 226 IIGTPQSKT 234 (248)
Q Consensus 226 ~I~~p~l~~ 234 (248)
+..|.+.+
T Consensus 82 -i~lp~l~g 89 (142)
T 4i95_A 82 -IHLPMLDN 89 (142)
T ss_dssp -SSSGGGTT
T ss_pred -ccCcccCC
Confidence 66665544
No 2
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=74.49 E-value=27 Score=28.56 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=41.8
Q ss_pred cccCcEEEEE-EeccCCcccccccCCCCceeecceEEEEeCCCceEEEEEEeecCceeEEEEEEEEEEEeCCCeEEEEEE
Q 025746 145 TLLNAKWILV-YTSFSGLFPLLSRGTLPLARVEEISQTIDSENFTVQNSIRFAGPLATTSISTNAKFEVRSPKRVQIKFE 223 (248)
Q Consensus 145 ~lL~G~W~L~-YTS~~~~l~ll~~g~lP~v~vG~I~Q~ID~~~~~v~NvV~f~~Pl~~gsv~v~Asfev~s~~Rv~V~Fe 223 (248)
.-|.|-|+|+ |-+...-.+ +. +..+..+-+|. ++|++.|.+-.... ...+...+.++..|+.......+
T Consensus 10 ~~L~GvWQ~c~y~~~~~~~~----~~---l~~s~~~KIlS-~DgtF~N~~m~~~~--~aiIt~yGtY~l~SD~~Y~E~i~ 79 (142)
T 4gzv_A 10 ADLKGIWQLCHYVSESPDVP----GA---LKPSNTFKVLS-DDGRIVNFTIIPGA--DAIITGYGTYKQLTDDSYKESIE 79 (142)
T ss_dssp CCCCEEEEEEEEEESSTTSC----CE---EEEEEEEEEEC-TTSEEEEEECCTTS--CCEEEEEEEEEEEETTEEEEEEE
T ss_pred ccceEEeEEeeEeecCCCCC----ce---EeecCceEEEC-CCCcEEEEEEeCCC--CcEEEEeEEEEecCCCeeeeeec
Confidence 3599999988 444433211 11 24456677775 45689998864432 34466677777777765544444
Q ss_pred e
Q 025746 224 E 224 (248)
Q Consensus 224 ~ 224 (248)
+
T Consensus 80 k 80 (142)
T 4gzv_A 80 K 80 (142)
T ss_dssp E
T ss_pred c
Confidence 3
No 3
>2a6s_A Toxin YOEB; YEFM, antitoxin, addiction modules, RNAse, inhibitor; 1.77A {Escherichia coli} SCOP: d.298.1.1 PDB: 2a6r_A 2a6q_E
Probab=37.99 E-value=94 Score=21.15 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCC
Q 025746 118 SETRAEIVELITQLEAKNPTP 138 (248)
Q Consensus 118 ~e~r~eI~elI~qLEalNPtp 138 (248)
......|.++|+.|.. ||-+
T Consensus 21 ~~~~~~i~~~i~~l~~-~P~~ 40 (84)
T 2a6s_A 21 KRIVKKINELIKDTRR-TPFE 40 (84)
T ss_dssp HHHHHHHHHHHHHHHH-STTS
T ss_pred HHHHHHHHHHHHHHHh-CCCC
Confidence 4556888899988855 6754
No 4
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=33.29 E-value=26 Score=24.35 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhCCCC
Q 025746 122 AEIVELITQLEAKNPTP 138 (248)
Q Consensus 122 ~eI~elI~qLEalNPtp 138 (248)
..+.++++.|...||-+
T Consensus 25 ~~~~~~i~~l~~~~p~~ 41 (88)
T 1z8m_A 25 SVLNEVILTLRKKEPLD 41 (88)
T ss_dssp HHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHhcCCCCc
Confidence 56888888886446643
No 5
>3oei_C RELK (toxin RV3358); toxin-antitoxin systems, protein-protein complex, tuberculos structural genomics consortium, protein binding; HET: MLZ FLC; 2.15A {Mycobacterium tuberculosis} SCOP: d.298.1.0
Probab=31.20 E-value=64 Score=24.13 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhCCC
Q 025746 118 SETRAEIVELITQLEAKNPT 137 (248)
Q Consensus 118 ~e~r~eI~elI~qLEalNPt 137 (248)
+..+..|.++|.+|+ .||-
T Consensus 33 k~~~krI~~~I~~l~-~nP~ 51 (96)
T 3oei_C 33 RKTARRITRLIGEIQ-RDPF 51 (96)
T ss_dssp HHHHHHHHHHHHHHH-HCTT
T ss_pred HHHHHHHHHHHHHHH-hCCC
Confidence 577899999999987 4774
No 6
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=27.87 E-value=82 Score=22.95 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=29.4
Q ss_pred chhhHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Q 025746 92 EVTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTP 138 (248)
Q Consensus 92 ~~~~~~~lK~~LL~av~~t~RG~~as~e~r~eI~elI~qLEalNPtp 138 (248)
..-.+.+||++|-. ||+..+-...+-|+.|..-++..++.+
T Consensus 27 ~klkVaeLK~eLk~------RGL~~sG~KaeLIeRL~~~~~~~~~~~ 67 (75)
T 2kvu_A 27 DDMKVAELKQELKL------RSLPVSGTKTELIERLRAYQDQISPVP 67 (75)
T ss_dssp TTSCHHHHHHHHHH------TTCCCCSCHHHHHHHHHHHHHTTSCCS
T ss_pred HHCcHHHHHHHHHH------cCCCCCCCHHHHHHHHHHHHHccCCCC
Confidence 34568889987765 788876666677777777777766544
No 7
>4fxi_A MRNA interferase RELE; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, B-ME on Cys50; HET: CME; 1.80A {Escherichia coli} PDB: 4fxe_D 3kha_A* 4fxh_A* 2kc8_A 2kc9_A 3kiq_y* 3kis_y* 3kiu_y* 3kix_y*
Probab=20.16 E-value=1.5e+02 Score=21.71 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHHHHHhCCCC
Q 025746 117 TSETRAEIVELITQLEAKNPTP 138 (248)
Q Consensus 117 s~e~r~eI~elI~qLEalNPtp 138 (248)
+..++..|.+.|++|. .||-+
T Consensus 19 d~~~~~ri~~~l~~l~-~nP~~ 39 (95)
T 4fxi_A 19 GSTVREQLKKKLVEVL-ESPRI 39 (95)
T ss_dssp CHHHHHHHHHHHHHHH-HSCCC
T ss_pred CHHHHHHHHHHHHHHh-hCCCC
Confidence 3677889999999885 47643
No 8
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=17.80 E-value=1.1e+02 Score=26.27 Aligned_cols=66 Identities=14% Similarity=0.021 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHhCCCCC-------------CCccccccCcEEEEEEeccC
Q 025746 93 VTEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTPA-------------PTEALTLLNAKWILVYTSFS 159 (248)
Q Consensus 93 ~~~~~~lK~~LL~av~~t~RG~~as~e~r~eI~elI~qLEalNPtp~-------------P~~sl~lL~G~W~L~YTS~~ 159 (248)
..+.+..|++|++.+..... ....++.+.+..++++|+...++.. |..+ .+|.|...|..-..+
T Consensus 51 ~~~~~~qk~~ll~~L~~l~~--~~~~~~a~~~~~l~~~l~~~~~~gR~~v~ld~d~i~~~~~~n-~~L~~gd~L~iP~r~ 127 (236)
T 3p42_A 51 KAKALKDYQHVMAQLASWEA--EADDDVAATIKSVRQQLLNLNITGRLPVKLDPDFVRVDENSN-PPLVGDYTLYTVQRP 127 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHTTCCCCCCCCCCCCTTSCEESGGGS-CBCCEEEEEECCCCC
T ss_pred HHHHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHcCCCCceEEeecCHHHHhcCCCCC-CccCCCCEEEECCCC
Confidence 45567788888888754321 1224667789999999999876552 2222 478888888877776
Q ss_pred Cc
Q 025746 160 GL 161 (248)
Q Consensus 160 ~~ 161 (248)
.+
T Consensus 128 ~t 129 (236)
T 3p42_A 128 VT 129 (236)
T ss_dssp SE
T ss_pred CE
Confidence 64
No 9
>3bpq_B Toxin RELE3; protein toxin-antitoxin complex; 2.20A {Methanocaldococcus jannaschii}
Probab=17.31 E-value=2.4e+02 Score=18.75 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCC
Q 025746 118 SETRAEIVELITQLEAKNPTP 138 (248)
Q Consensus 118 ~e~r~eI~elI~qLEalNPtp 138 (248)
+..+..|.++++.++.+...|
T Consensus 18 ~~~~~~i~~~i~~~~~l~~~P 38 (88)
T 3bpq_B 18 GHIRKRIKLIIEECQNSNSLN 38 (88)
T ss_dssp HHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHhcccCc
Confidence 556677888888887654333
No 10
>2khe_A Toxin RELE, toxin-like protein; toxin-antitoxin, RNAse, plasmid, hydrolase, structural genomics, NPPSFA; NMR {Thermus thermophilus}
Probab=15.25 E-value=1.2e+02 Score=20.22 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHH--HhCCC
Q 025746 118 SETRAEIVELITQLE--AKNPT 137 (248)
Q Consensus 118 ~e~r~eI~elI~qLE--alNPt 137 (248)
+..+..|.+.|+.|. ..||.
T Consensus 20 ~~~~~~i~~~i~~l~~~~~~P~ 41 (89)
T 2khe_A 20 REVARRILRFLRERVATLEDPR 41 (89)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHHhhccccCCC
Confidence 555677777777775 34554
Done!