Query 025746
Match_columns 248
No_of_seqs 142 out of 343
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 16:43:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025746.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025746hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mu2a2 e.8.1.2 (A:3-429) HIV- 25.6 33 0.0024 30.1 4.7 42 113-155 21-73 (427)
2 d1wmia1 d.298.1.2 (A:1-88) Hyp 23.6 18 0.0013 24.3 2.0 24 117-141 19-42 (88)
3 d1t6sa1 a.4.5.60 (A:1-85) Segr 18.5 1.1E+02 0.0079 20.1 5.3 34 119-156 40-73 (85)
4 d2a6sa1 d.298.1.1 (A:1-83) Tox 16.9 62 0.0045 21.9 3.7 31 118-151 21-56 (83)
5 d2gyc31 a.108.1.1 (3:2-48) Rib 16.8 92 0.0067 19.2 4.1 30 100-138 3-32 (47)
6 d1imua_ d.204.1.1 (A:) Ribosom 12.4 1.1E+02 0.0083 20.6 4.2 28 110-137 6-33 (107)
7 d2ywqa1 d.204.1.1 (A:1-95) Rib 11.3 42 0.0031 22.4 1.4 28 110-137 7-34 (95)
8 d1qpza1 a.35.1.5 (A:2-58) Puri 11.2 82 0.006 19.8 2.7 17 115-131 26-42 (57)
9 d2hsga1 a.35.1.5 (A:2-58) Gluc 10.8 83 0.006 19.7 2.6 17 115-131 27-43 (57)
10 d2ov9a1 d.38.1.5 (A:7-209) Hyp 10.5 3E+02 0.022 20.7 6.7 43 94-136 22-64 (203)
No 1
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=25.56 E-value=33 Score=30.05 Aligned_cols=42 Identities=19% Similarity=0.401 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhC-----CCCCCCcccccc------CcEEEEEE
Q 025746 113 GLNATSETRAEIVELITQLEAKN-----PTPAPTEALTLL------NAKWILVY 155 (248)
Q Consensus 113 G~~as~e~r~eI~elI~qLEalN-----Ptp~P~~sl~lL------~G~W~L~Y 155 (248)
-...++++++++.+.|++|+..+ |...|-.+ +.+ .|+||++-
T Consensus 21 q~pl~~ek~~al~~~i~ell~~G~I~~~ps~Sp~~s-Pvf~V~KKd~gk~Rl~v 73 (427)
T d1mu2a2 21 QWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNT-PTFAIKKKDKNKWRMLI 73 (427)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTSEEECCTTCCCBB-CEEECCCCC----CEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCeEEeCCCCCcCcC-ceEEEEcCCCCCcEEEE
Confidence 34568999999999999999986 33344443 332 39999974
No 2
>d1wmia1 d.298.1.2 (A:1-88) Hypothetical protein PHS013 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=23.64 E-value=18 Score=24.26 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHHHHhCCCCCCC
Q 025746 117 TSETRAEIVELITQLEAKNPTPAPT 141 (248)
Q Consensus 117 s~e~r~eI~elI~qLEalNPtp~P~ 141 (248)
++..+..|.+.++.|+. ||.+.|.
T Consensus 19 ~~~~~~~I~~~l~~L~~-~P~~~~~ 42 (88)
T d1wmia1 19 PKAHYRRFLEFRDILEY-EPVPREK 42 (88)
T ss_dssp CHHHHHHHHHHHHHHTT-CSCCHHH
T ss_pred CHHHHHHHHHHHHHHHh-CcCcCCc
Confidence 46778899998888755 6765543
No 3
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=18.47 E-value=1.1e+02 Score=20.14 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCccccccCcEEEEEEe
Q 025746 119 ETRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYT 156 (248)
Q Consensus 119 e~r~eI~elI~qLEalNPtp~P~~sl~lL~G~W~L~YT 156 (248)
+.++.|+++..+.+..| .+.. +-.+.|.|+|.--
T Consensus 40 ~i~~~l~~L~~~y~~~~---~g~e-l~~~~~gy~~~tk 73 (85)
T d1t6sa1 40 ELQEAVDELNRDYEATG---RTFR-IHAIAGGYRFLTE 73 (85)
T ss_dssp HHHHHHHHHHHHHHHHT---CSEE-EEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCC---CcEE-EEEECCEEEEEEh
Confidence 34555566666665554 3454 5678999998643
No 4
>d2a6sa1 d.298.1.1 (A:1-83) Toxin YoeB {Escherichia coli [TaxId: 562]}
Probab=16.93 E-value=62 Score=21.93 Aligned_cols=31 Identities=29% Similarity=0.491 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhCCC-----CCCCccccccCcEE
Q 025746 118 SETRAEIVELITQLEAKNPT-----PAPTEALTLLNAKW 151 (248)
Q Consensus 118 ~e~r~eI~elI~qLEalNPt-----p~P~~sl~lL~G~W 151 (248)
+.....|+.+|+++.. ||. |+|+. --|.|-|
T Consensus 21 ~k~~kkI~~ll~~i~~-~p~~g~gkpE~Lk--g~l~g~w 56 (83)
T d2a6sa1 21 KRIVKKINELIKDTRR-TPFEGKGKPEPLK--HNLSGFW 56 (83)
T ss_dssp HHHHHHHHHHHHHHHH-STTSSTTCCEECC--GGGTTCE
T ss_pred HHHHHHHHHHHHHHHh-CcCCCCCCCcccc--CCCCCEE
Confidence 6778899999999975 553 34444 2477777
No 5
>d2gyc31 a.108.1.1 (3:2-48) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Escherichia coli [TaxId: 562]}
Probab=16.77 E-value=92 Score=19.15 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=23.9
Q ss_pred HHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Q 025746 100 KKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNPTP 138 (248)
Q Consensus 100 K~~LL~av~~t~RG~~as~e~r~eI~elI~qLEalNPtp 138 (248)
|.++|++++.-. --+|.+||..+|..-...
T Consensus 3 ke~Ileaia~MS---------VmdvveLi~amEEKFGVs 32 (47)
T d2gyc31 3 KDQIIEAVAAMS---------VMDVVELISAMEEKFGVS 32 (47)
T ss_dssp HHHHHHHHHHSC---------HHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHhh---------HHHHHHHHHHHHHHhCcc
Confidence 788899988642 578999999999887553
No 6
>d1imua_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue) {Haemophilus influenzae [TaxId: 727]}
Probab=12.40 E-value=1.1e+02 Score=20.56 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=25.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhCCC
Q 025746 110 TDRGLNATSETRAEIVELITQLEAKNPT 137 (248)
Q Consensus 110 t~RG~~as~e~r~eI~elI~qLEalNPt 137 (248)
+.|++..|+.-++.|++-+..|+...+.
T Consensus 6 ~~r~~~lt~al~~~i~~kl~kl~k~~~~ 33 (107)
T d1imua_ 6 TSKQMDITPAIREHLEERLAKLGKWQTQ 33 (107)
T ss_dssp CCSSSCCCHHHHHHHHHHHHHHHTSSCC
T ss_pred EEEcCcCCHHHHHHHHHHHHHHHhhCCC
Confidence 5789999999999999999999998754
No 7
>d2ywqa1 d.204.1.1 (A:1-95) Ribosome binding protein Y (YfiA homologue) {Thermus thermophilus [TaxId: 274]}
Probab=11.28 E-value=42 Score=22.42 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=24.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhCCC
Q 025746 110 TDRGLNATSETRAEIVELITQLEAKNPT 137 (248)
Q Consensus 110 t~RG~~as~e~r~eI~elI~qLEalNPt 137 (248)
++|++..++.-|+.|++-+..|+...+.
T Consensus 7 tgr~~~lt~al~~~ve~kl~kL~k~~~~ 34 (95)
T d2ywqa1 7 IGRNLEITDAIRDYVEKKLARLDRYQDG 34 (95)
T ss_dssp EEETSCCCHHHHHHHHHHHHGGGGSCSS
T ss_pred EEECCccCHHHHHHHHHHHHHHHHhCCC
Confidence 5688999999999999999999988753
No 8
>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.16 E-value=82 Score=19.76 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=15.0
Q ss_pred CCCHHHHHHHHHHHHHH
Q 025746 115 NATSETRAEIVELITQL 131 (248)
Q Consensus 115 ~as~e~r~eI~elI~qL 131 (248)
..+++.|++|.+++++|
T Consensus 26 ~vs~~tr~rV~~~a~~l 42 (57)
T d1qpza1 26 FVAEETRNAVWAAIKEL 42 (57)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 36899999999999887
No 9
>d2hsga1 a.35.1.5 (A:2-58) Glucose-resistance amylase regulator CcpA, N-terminal domain {Bacillus megaterium [TaxId: 1404]}
Probab=10.77 E-value=83 Score=19.70 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=15.3
Q ss_pred CCCHHHHHHHHHHHHHH
Q 025746 115 NATSETRAEIVELITQL 131 (248)
Q Consensus 115 ~as~e~r~eI~elI~qL 131 (248)
..+++.|++|.+++++|
T Consensus 27 ~Vs~~tr~rV~~aa~~l 43 (57)
T d2hsga1 27 NVKPSTRKKVLETIERL 43 (57)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 36899999999999988
No 10
>d2ov9a1 d.38.1.5 (A:7-209) Hypothetical protein RHA1_ro05818 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=10.53 E-value=3e+02 Score=20.70 Aligned_cols=43 Identities=23% Similarity=0.388 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 025746 94 TEIDNLKKALVDSFYGTDRGLNATSETRAEIVELITQLEAKNP 136 (248)
Q Consensus 94 ~~~~~lK~~LL~av~~t~RG~~as~e~r~eI~elI~qLEalNP 136 (248)
....+.-++|.+++..++-+-..=.+..+.|++++.+|+...+
T Consensus 22 ~r~~~a~R~l~d~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 64 (203)
T d2ov9a1 22 DRATDAARRVVDALLRTDRGNANLERVAEELNSIAGHLEEHAP 64 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhhcccc
Confidence 3455667789999998887777767888999999999998764
Done!