BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025747
         (248 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana
           GN=ESC PE=2 SV=1
          Length = 311

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 145 SASEPSAKRHRGRPPGSGKKQLDALGGVGGV--GFTPHVITVKAGEDISSKIFAFSQQGP 202
           ++S    KR RGRPPGS  K    +            HV+ V  G DI   +  ++++  
Sbjct: 79  TSSSAPGKRPRGRPPGSKNKAKPPIIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRG 138

Query: 203 RTVCILSASGAICNVTLRQPT 223
           R V +L  +G + NVTLRQP 
Sbjct: 139 RGVSVLGGNGTVSNVTLRQPV 159


>sp|Q6ZRS2|SRCAP_HUMAN Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=3
          Length = 3230

 Score = 32.0 bits (71), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 43/97 (44%), Gaps = 18/97 (18%)

Query: 86   GSPSLRTGGGSFSIDPAKKKRGRPRKYTPDGNIALRLATTAQSPG------SLADSGGG- 138
            GSPS+R+  G  S  P     G P +  P  +    L T  Q P        L  +GGG 
Sbjct: 2789 GSPSVRSMSGPESSPPI----GGPCEAAPSSS----LPTPPQQPFIARRHIELGVTGGGS 2840

Query: 139  ---GGGAAGSASEPSAKRHRGRPPGSGKKQLDALGGV 172
               G GA  + + P+ KR RGRPP   +   DA  GV
Sbjct: 2841 PENGDGALLAITPPAVKRRRGRPPKKNRSPADAGRGV 2877


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.131    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,959,416
Number of Sequences: 539616
Number of extensions: 4619726
Number of successful extensions: 30840
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 519
Number of HSP's that attempted gapping in prelim test: 25805
Number of HSP's gapped (non-prelim): 4709
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)