Query 025747
Match_columns 248
No_of_seqs 202 out of 362
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 09:06:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03479 DUF296: Domain of unk 99.6 1.6E-16 3.5E-21 127.7 5.4 70 177-246 1-72 (120)
2 COG1661 Predicted DNA-binding 99.3 6E-12 1.3E-16 106.1 7.9 73 176-248 8-83 (141)
3 PF02178 AT_hook: AT hook moti 96.6 0.00083 1.8E-08 36.3 0.6 12 103-114 1-12 (13)
4 smart00384 AT_hook DNA binding 96.5 0.0012 2.7E-08 41.7 1.4 15 103-117 1-15 (26)
5 PF14621 RFX5_DNA_bdg: RFX5 DN 88.2 0.16 3.5E-06 45.5 0.3 12 101-112 66-77 (219)
6 PF13546 DDE_5: DDE superfamil 77.3 1.3 2.8E-05 39.4 1.5 15 101-115 229-243 (273)
7 COG1710 Uncharacterized protei 70.1 2 4.2E-05 36.6 0.8 14 101-114 82-96 (139)
8 PF14869 DUF4488: Domain of un 69.1 8 0.00017 33.0 4.2 36 204-241 28-63 (133)
9 PF13737 DDE_Tnp_1_5: Transpos 58.2 3.3 7.1E-05 34.0 -0.0 21 100-121 21-41 (112)
10 COG1777 Predicted transcriptio 53.6 5.9 0.00013 36.3 0.9 25 102-126 63-88 (217)
11 cd04618 CBS_pair_5 The CBS dom 44.4 71 0.0015 23.7 5.4 37 181-217 52-89 (98)
12 KOG4565 E93 protein involved i 43.0 8 0.00017 34.8 -0.0 13 102-114 112-124 (206)
13 PF00571 CBS: CBS domain CBS d 33.0 98 0.0021 20.3 4.1 39 177-215 5-43 (57)
14 PF15333 TAF1D: TATA box-bindi 30.3 22 0.00049 32.5 0.8 13 105-117 64-76 (217)
15 PF01582 TIR: TIR domain; Int 29.4 42 0.00092 26.8 2.2 35 176-210 28-64 (141)
16 COG1712 Predicted dinucleotide 27.3 1.2E+02 0.0026 28.6 4.9 49 187-235 97-166 (255)
17 PF12736 CABIT: Cell-cycle sus 26.1 41 0.00088 29.9 1.6 60 179-242 2-70 (256)
18 PRK08179 prfH peptide chain re 25.2 1.8E+02 0.004 26.2 5.6 44 180-223 2-60 (200)
19 cd06245 M14_CPD_III The third 23.7 1.5E+02 0.0033 28.5 5.1 55 191-245 275-332 (363)
20 PF02196 RBD: Raf-like Ras-bin 23.1 2.9E+02 0.0062 20.5 5.5 35 178-212 11-47 (71)
21 smart00412 Cu_FIST Copper-Fist 22.0 40 0.00086 23.4 0.6 8 102-109 31-38 (39)
22 cd04603 CBS_pair_KefB_assoc Th 21.6 2.3E+02 0.0049 20.8 4.8 38 176-213 61-98 (111)
23 cd04595 CBS_pair_DHH_polyA_Pol 20.2 2.3E+02 0.005 20.4 4.5 37 177-214 62-98 (110)
24 cd03865 M14_CPE_H Peptidase M1 20.1 1.3E+02 0.0028 29.8 3.9 57 189-245 312-372 (402)
No 1
>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown. Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.
Probab=99.64 E-value=1.6e-16 Score=127.75 Aligned_cols=70 Identities=21% Similarity=0.167 Sum_probs=63.4
Q ss_pred ceEEEEEEcCCCcHHHHHHHHHhhCCceEEEeccCCceeEEEEcCCCC--CCCeeEEeeeeEEEEeccccee
Q 025747 177 FTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTM--SGGTVTYEVLLIILYDPCNELY 246 (248)
Q Consensus 177 ftpHVIrV~~GEDV~~kI~~Faqq~~rAicILSa~GaVSnVTLRqp~s--sg~tvtyeGrFEILSLsGTiL~ 246 (248)
||+|+|||++||||.++|.+||+++.+..|+|+|+|+|++|+|++++. .....+|+|+|||+||+|||..
T Consensus 1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~ 72 (120)
T PF03479_consen 1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISP 72 (120)
T ss_dssp EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEE
T ss_pred CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEEC
Confidence 689999999999999999999999999888889999999999999842 3458899999999999999975
No 2
>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]
Probab=99.31 E-value=6e-12 Score=106.11 Aligned_cols=73 Identities=23% Similarity=0.198 Sum_probs=66.0
Q ss_pred CceEEEEEEcCCCcHHHHHHHHHhhCCceEEEeccCCceeEEEEcCCCCCCC---eeEEeeeeEEEEecccceecC
Q 025747 176 GFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGG---TVTYEVLLIILYDPCNELYLD 248 (248)
Q Consensus 176 ~ftpHVIrV~~GEDV~~kI~~Faqq~~rAicILSa~GaVSnVTLRqp~ssg~---tvtyeGrFEILSLsGTiL~~~ 248 (248)
.-+-+++||++|||+.+.|.+||+++....+|++|+|++++++||+.+-.+. ++.+.|+||||||.|||-.+|
T Consensus 8 ~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~ 83 (141)
T COG1661 8 SGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD 83 (141)
T ss_pred cceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC
Confidence 3468899999999999999999999998779999999999999999984433 788999999999999998776
No 3
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.
Probab=96.55 E-value=0.00083 Score=36.26 Aligned_cols=12 Identities=67% Similarity=1.088 Sum_probs=4.6
Q ss_pred cccCCCCCCCCC
Q 025747 103 KKKRGRPRKYTP 114 (248)
Q Consensus 103 KkKRGRPRKY~p 114 (248)
+||||||+|+..
T Consensus 1 ~r~RGRP~k~~~ 12 (13)
T PF02178_consen 1 KRKRGRPRKNAK 12 (13)
T ss_dssp S--SS--TT---
T ss_pred CCcCCCCccccC
Confidence 689999999854
No 4
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions. Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).
Probab=96.53 E-value=0.0012 Score=41.66 Aligned_cols=15 Identities=60% Similarity=0.922 Sum_probs=12.7
Q ss_pred cccCCCCCCCCCCCc
Q 025747 103 KKKRGRPRKYTPDGN 117 (248)
Q Consensus 103 KkKRGRPRKY~pdg~ 117 (248)
|||||||||+..+..
T Consensus 1 kRkRGRPrK~~~~~~ 15 (26)
T smart00384 1 KRKRGRPRKAPKDXX 15 (26)
T ss_pred CCCCCCCCCCCCccc
Confidence 699999999977653
No 5
>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain
Probab=88.25 E-value=0.16 Score=45.53 Aligned_cols=12 Identities=75% Similarity=1.115 Sum_probs=10.6
Q ss_pred cCcccCCCCCCC
Q 025747 101 PAKKKRGRPRKY 112 (248)
Q Consensus 101 ~~KkKRGRPRKY 112 (248)
.+|||||||||-
T Consensus 66 dAKRKRGRPRKK 77 (219)
T PF14621_consen 66 DAKRKRGRPRKK 77 (219)
T ss_pred hhhhhcCCCccC
Confidence 579999999976
No 6
>PF13546 DDE_5: DDE superfamily endonuclease
Probab=77.27 E-value=1.3 Score=39.42 Aligned_cols=15 Identities=60% Similarity=1.041 Sum_probs=11.5
Q ss_pred cCcccCCCCCCCCCC
Q 025747 101 PAKKKRGRPRKYTPD 115 (248)
Q Consensus 101 ~~KkKRGRPRKY~pd 115 (248)
+..+|||||||||.-
T Consensus 229 ~~~~~rGRPr~~g~~ 243 (273)
T PF13546_consen 229 PPPPKRGRPRKYGRR 243 (273)
T ss_pred ccCCCCCCCCCCCCc
Confidence 445669999999854
No 7
>COG1710 Uncharacterized protein conserved in archaea [Function unknown]
Probab=70.13 E-value=2 Score=36.59 Aligned_cols=14 Identities=71% Similarity=1.222 Sum_probs=11.5
Q ss_pred cCc-ccCCCCCCCCC
Q 025747 101 PAK-KKRGRPRKYTP 114 (248)
Q Consensus 101 ~~K-kKRGRPRKY~p 114 (248)
+.| |-|||||||+-
T Consensus 82 Pvk~KgrGrprkyd~ 96 (139)
T COG1710 82 PVKLKGRGRPRKYDR 96 (139)
T ss_pred eeeecCCCCCcccch
Confidence 557 88999999964
No 8
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=69.07 E-value=8 Score=33.04 Aligned_cols=36 Identities=31% Similarity=0.313 Sum_probs=30.2
Q ss_pred eEEEeccCCceeEEEEcCCCCCCCeeEEeeeeEEEEec
Q 025747 204 TVCILSASGAICNVTLRQPTMSGGTVTYEVLLIILYDP 241 (248)
Q Consensus 204 AicILSa~GaVSnVTLRqp~ssg~tvtyeGrFEILSLs 241 (248)
.+=|||.-|...|+++ .+. ++.++++.|.||+.|=+
T Consensus 28 ~lKilS~Dgtf~Ni~~-~~~-~~aiIt~~GtY~~~sD~ 63 (133)
T PF14869_consen 28 VLKILSDDGTFVNITM-IPK-SGAIITGYGTYEQPSDN 63 (133)
T ss_pred cEEEEcCCCcEEEEEE-eCC-CCcEEEEeEEEEEcCCc
Confidence 4779999999999999 333 46899999999998743
No 9
>PF13737 DDE_Tnp_1_5: Transposase DDE domain
Probab=58.23 E-value=3.3 Score=34.03 Aligned_cols=21 Identities=43% Similarity=0.813 Sum_probs=15.7
Q ss_pred CcCcccCCCCCCCCCCCccccc
Q 025747 100 DPAKKKRGRPRKYTPDGNIALR 121 (248)
Q Consensus 100 ~~~KkKRGRPRKY~pdg~~~~~ 121 (248)
++...|||||++| +|-.|...
T Consensus 21 ~~~~~kRGr~~~y-SD~aI~~~ 41 (112)
T PF13737_consen 21 APPRGKRGRPPRY-SDAAIQTC 41 (112)
T ss_pred cCCCCCCCCCccc-chHHHHHH
Confidence 3457899999999 68765543
No 10
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=53.62 E-value=5.9 Score=36.26 Aligned_cols=25 Identities=40% Similarity=0.642 Sum_probs=17.8
Q ss_pred CcccCCCCCCCC-CCCccccccccCC
Q 025747 102 AKKKRGRPRKYT-PDGNIALRLATTA 126 (248)
Q Consensus 102 ~KkKRGRPRKY~-pdg~~~~~l~p~p 126 (248)
.|.+|||||||- .-+++++-..-+|
T Consensus 63 e~~~Rg~~rKYY~Is~~~rleV~lsp 88 (217)
T COG1777 63 EKIPRGRPRKYYMISRNLRLEVTLSP 88 (217)
T ss_pred cccccCCCcceeeccCCeEEEEEecC
Confidence 478889999995 6777766554333
No 11
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=44.44 E-value=71 Score=23.65 Aligned_cols=37 Identities=5% Similarity=0.181 Sum_probs=32.0
Q ss_pred EEEEcCCCcHHHHHHHHHhhCCceEEEeccC-CceeEE
Q 025747 181 VITVKAGEDISSKIFAFSQQGPRTVCILSAS-GAICNV 217 (248)
Q Consensus 181 VIrV~~GEDV~~kI~~Faqq~~rAicILSa~-GaVSnV 217 (248)
++.+.+.+++.+.+..|.+.+-+.++|+... |-+.-+
T Consensus 52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~gi 89 (98)
T cd04618 52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYI 89 (98)
T ss_pred eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEE
Confidence 7899999999999999999999999999877 755433
No 12
>KOG4565 consensus E93 protein involved in programmed cell death, putative transcription regulator [Transcription]
Probab=42.99 E-value=8 Score=34.80 Aligned_cols=13 Identities=54% Similarity=0.915 Sum_probs=11.4
Q ss_pred CcccCCCCCCCCC
Q 025747 102 AKKKRGRPRKYTP 114 (248)
Q Consensus 102 ~KkKRGRPRKY~p 114 (248)
-+|||||=|+|+-
T Consensus 112 pRkKRGrYRqYd~ 124 (206)
T KOG4565|consen 112 PRKKRGRYRQYDK 124 (206)
T ss_pred ccccccchhhhhH
Confidence 5899999999964
No 13
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=33.05 E-value=98 Score=20.29 Aligned_cols=39 Identities=18% Similarity=0.378 Sum_probs=32.1
Q ss_pred ceEEEEEEcCCCcHHHHHHHHHhhCCceEEEeccCCcee
Q 025747 177 FTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAIC 215 (248)
Q Consensus 177 ftpHVIrV~~GEDV~~kI~~Faqq~~rAicILSa~GaVS 215 (248)
|++-++.|.+.+.+.+.+..|.+.+-..+.|+...|.+-
T Consensus 5 m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~ 43 (57)
T PF00571_consen 5 MTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLV 43 (57)
T ss_dssp SBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEE
T ss_pred CcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEE
Confidence 455678899999999999999999988999987666554
No 14
>PF15333 TAF1D: TATA box-binding protein-associated factor 1D
Probab=30.32 E-value=22 Score=32.55 Aligned_cols=13 Identities=46% Similarity=0.956 Sum_probs=9.3
Q ss_pred cCCCCCCCCCCCc
Q 025747 105 KRGRPRKYTPDGN 117 (248)
Q Consensus 105 KRGRPRKY~pdg~ 117 (248)
|+-+-|||-+-|.
T Consensus 64 KkrkkrKYk~tgr 76 (217)
T PF15333_consen 64 KKRKKRKYKPTGR 76 (217)
T ss_pred HHhhhhccCccCC
Confidence 5566799987663
No 15
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=29.44 E-value=42 Score=26.81 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=27.5
Q ss_pred CceEEEEE--EcCCCcHHHHHHHHHhhCCceEEEecc
Q 025747 176 GFTPHVIT--VKAGEDISSKIFAFSQQGPRTVCILSA 210 (248)
Q Consensus 176 ~ftpHVIr--V~~GEDV~~kI~~Faqq~~rAicILSa 210 (248)
+++..+-. +.+|+.+.+.|....++..+.|+|||-
T Consensus 28 g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~ 64 (141)
T PF01582_consen 28 GYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSR 64 (141)
T ss_dssp TS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESH
T ss_pred CeEEEEechhhcccccccchhhHhhhhceeeEEEeec
Confidence 44443333 679999999999999998899999984
No 16
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=27.30 E-value=1.2e+02 Score=28.57 Aligned_cols=49 Identities=27% Similarity=0.388 Sum_probs=38.9
Q ss_pred CCcHHHHHHHHHhhCCceEEEeccC------------CceeEEEE--cCCCC------C-CCeeEEeeee
Q 025747 187 GEDISSKIFAFSQQGPRTVCILSAS------------GAICNVTL--RQPTM------S-GGTVTYEVLL 235 (248)
Q Consensus 187 GEDV~~kI~~Faqq~~rAicILSa~------------GaVSnVTL--Rqp~s------s-g~tvtyeGrF 235 (248)
.+++++++.+.++.+..-+.++|+. |-|.+|+| |.|-. . ..++.|||.-
T Consensus 97 d~~l~erl~~lak~~~~rv~~pSGAiGGlD~l~aar~g~i~~V~lttrKpp~~lg~dl~~~ktVlfeG~a 166 (255)
T COG1712 97 DEGLRERLRELAKCGGARVYLPSGAIGGLDALAAARVGGIEEVVLTTRKPPAELGIDLEDKKTVLFEGSA 166 (255)
T ss_pred ChHHHHHHHHHHhcCCcEEEecCccchhHHHHHHhhcCCeeEEEEEeecChHHhCcCcccCceEEEeccH
Confidence 5789999999999999989988863 88999998 44432 1 5578888863
No 17
>PF12736 CABIT: Cell-cycle sustaining, positive selection,
Probab=26.06 E-value=41 Score=29.94 Aligned_cols=60 Identities=17% Similarity=0.238 Sum_probs=40.6
Q ss_pred EEEEEEcCCCcHHHHHHHHHhhCCceEEEeccCCceeEEEEcCCCCCC-----C----eeEEeeeeEEEEecc
Q 025747 179 PHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG-----G----TVTYEVLLIILYDPC 242 (248)
Q Consensus 179 pHVIrV~~GEDV~~kI~~Faqq~~rAicILSa~GaVSnVTLRqp~ssg-----~----tvtyeGrFEILSLsG 242 (248)
|-|++|..|..-...+.+++ -..|+|+.-..+..|.++--.... . ...|.|+|+++.=.|
T Consensus 2 P~vv~V~~g~y~~~~~~~l~----G~~l~l~~~~~~k~i~a~~~~~~~~~~~g~~~~IP~~y~G~F~~~~~~~ 70 (256)
T PF12736_consen 2 PRVVKVQSGVYFQGSVYELS----GQELCLHTGDQIKKILAQSVESEKGRKVGPHFLIPLNYPGKFKRLPRPG 70 (256)
T ss_pred CeEEEEecCCCCCCccccCC----CCEEEEEecCEeeEEEEEEEeccCccccCCEEEECCcccceEEECCCcc
Confidence 67899999998877776666 346777777776666643322221 1 467999999987654
No 18
>PRK08179 prfH peptide chain release factor-like protein; Reviewed
Probab=25.18 E-value=1.8e+02 Score=26.17 Aligned_cols=44 Identities=5% Similarity=0.126 Sum_probs=35.8
Q ss_pred EEEEEcCCC----------cHHHHHHHHHhhCCceEEEeccC-----CceeEEEEcCCC
Q 025747 180 HVITVKAGE----------DISSKIFAFSQQGPRTVCILSAS-----GAICNVTLRQPT 223 (248)
Q Consensus 180 HVIrV~~GE----------DV~~kI~~Faqq~~rAicILSa~-----GaVSnVTLRqp~ 223 (248)
.+|+|.+|. ||+.....||++....+.||+.. |.+..|+|..-+
T Consensus 2 ~~leI~aG~Gg~Ea~~fa~~L~~my~~~a~~~g~~~~ii~~~~~~~~gg~ksa~~~i~G 60 (200)
T PRK08179 2 ILLQLSSAQGPAECCLAVAKALERLLKEAARQGVRVTVLETETGRYPDTLRSALVSLDG 60 (200)
T ss_pred EEEEEeCCCChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEc
Confidence 378888885 78888899999999999998874 678998887643
No 19
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=23.75 E-value=1.5e+02 Score=28.52 Aligned_cols=55 Identities=11% Similarity=0.110 Sum_probs=39.7
Q ss_pred HHHHHHHHhhCCceE--EEeccCCc-eeEEEEcCCCCCCCeeEEeeeeEEEEecccce
Q 025747 191 SSKIFAFSQQGPRTV--CILSASGA-ICNVTLRQPTMSGGTVTYEVLLIILYDPCNEL 245 (248)
Q Consensus 191 ~~kI~~Faqq~~rAi--cILSa~Ga-VSnVTLRqp~ssg~tvtyeGrFEILSLsGTiL 245 (248)
.++|+.|.++-+++| .|....|. |..|+|...+..+.+..-.|.|.++-..|+|.
T Consensus 275 ~~all~~~~~~~~gI~G~V~d~~g~pi~~A~V~v~g~~~~~T~~~G~y~~~L~pG~y~ 332 (363)
T cd06245 275 KKSLLSMIVEAHKGVHGVVTDKAGKPISGATIVLNGGHRVYTKEGGYFHVLLAPGQHN 332 (363)
T ss_pred HHHHHHHHHHcCcEEEEEEEcCCCCCccceEEEEeCCCceEeCCCcEEEEecCCceEE
Confidence 678999999887665 57776665 77888877665433344679999984478774
No 20
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=23.07 E-value=2.9e+02 Score=20.46 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=28.3
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhCC--ceEEEeccCC
Q 025747 178 TPHVITVKAGEDISSKIFAFSQQGP--RTVCILSASG 212 (248)
Q Consensus 178 tpHVIrV~~GEDV~~kI~~Faqq~~--rAicILSa~G 212 (248)
+.-++.|.+|+-|.+.|...|+++. ...|.+--.|
T Consensus 11 q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 11 QRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 4668999999999999999999997 3566666666
No 21
>smart00412 Cu_FIST Copper-Fist. binds DNA only in present of copper or silver
Probab=22.03 E-value=40 Score=23.36 Aligned_cols=8 Identities=50% Similarity=1.012 Sum_probs=6.2
Q ss_pred CcccCCCC
Q 025747 102 AKKKRGRP 109 (248)
Q Consensus 102 ~KkKRGRP 109 (248)
.=||||||
T Consensus 31 ~i~kkGRP 38 (39)
T smart00412 31 PVRPRGRP 38 (39)
T ss_pred eecCCCCC
Confidence 35789998
No 22
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=21.58 E-value=2.3e+02 Score=20.79 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=31.3
Q ss_pred CceEEEEEEcCCCcHHHHHHHHHhhCCceEEEeccCCc
Q 025747 176 GFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGA 213 (248)
Q Consensus 176 ~ftpHVIrV~~GEDV~~kI~~Faqq~~rAicILSa~Ga 213 (248)
.|...+..+.+++.+.+.+..+.+.+...++|+...|.
T Consensus 61 ~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~ 98 (111)
T cd04603 61 VYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGK 98 (111)
T ss_pred eeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCe
Confidence 35566788999999999999999888888999987554
No 23
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=20.20 E-value=2.3e+02 Score=20.37 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=29.6
Q ss_pred ceEEEEEEcCCCcHHHHHHHHHhhCCceEEEeccCCce
Q 025747 177 FTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAI 214 (248)
Q Consensus 177 ftpHVIrV~~GEDV~~kI~~Faqq~~rAicILSa~GaV 214 (248)
|..+++.|...+.+.+.+..|.+.+...+.|+. .|.+
T Consensus 62 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~ 98 (110)
T cd04595 62 MSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRL 98 (110)
T ss_pred hcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEE
Confidence 456788899999999999999888777788877 5544
No 24
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=20.07 E-value=1.3e+02 Score=29.77 Aligned_cols=57 Identities=19% Similarity=0.191 Sum_probs=39.0
Q ss_pred cHHHHHHHHHhhCCceE--EEeccCCc-eeEEEEcCCCCCCCeeE-EeeeeEEEEecccce
Q 025747 189 DISSKIFAFSQQGPRTV--CILSASGA-ICNVTLRQPTMSGGTVT-YEVLLIILYDPCNEL 245 (248)
Q Consensus 189 DV~~kI~~Faqq~~rAi--cILSa~Ga-VSnVTLRqp~ssg~tvt-yeGrFEILSLsGTiL 245 (248)
|=+++|++|..|-+++| .|....|. |.+|++..-+....+.| -+|.|.++-+.|+|.
T Consensus 312 ~n~~all~~~~q~~~gI~G~V~D~~g~pI~~AtV~V~g~~~~~~T~~~G~Y~~~L~pG~Yt 372 (402)
T cd03865 312 DNKNSLVNYIEQVHRGVKGFVKDLQGNPIANATISVEGIDHDITSAKDGDYWRLLAPGNYK 372 (402)
T ss_pred HHHHHHHHHHHHhccceEEEEECCCCCcCCCeEEEEEcCccccEECCCeeEEECCCCEEEE
Confidence 45788999998887765 47766554 66676666553333434 679999866678774
Done!