Query 025747
Match_columns 248
No_of_seqs 202 out of 362
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 16:43:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p6y_A Hypothetical protein VC 99.7 1.2E-16 4E-21 131.0 8.3 69 177-246 2-71 (142)
2 2hx0_A Putative DNA-binding pr 99.7 1.5E-16 5.3E-21 132.0 8.7 74 172-246 13-87 (154)
3 2dt4_A Hypothetical protein PH 99.6 7.4E-16 2.5E-20 125.9 5.6 70 178-247 10-82 (143)
4 2h6l_A Hypothetical protein; N 99.6 1E-15 3.5E-20 125.5 5.5 70 178-247 10-82 (146)
5 3htn_A Putative DNA binding pr 99.5 4.4E-15 1.5E-19 122.7 6.2 70 178-247 16-88 (149)
6 3hwu_A Putative DNA-binding pr 99.2 1.7E-11 5.7E-16 100.9 7.3 69 178-247 13-84 (147)
7 2ezd_A High mobility group pro 96.6 0.00088 3E-08 41.2 2.0 16 150-165 3-18 (26)
8 4i95_A Putative uncharacterize 82.1 1.8 6.1E-05 36.1 4.9 36 203-240 36-71 (142)
9 4dyq_A Gene 1 protein; GP1, oc 79.4 0.55 1.9E-05 37.4 0.9 13 103-115 4-16 (140)
10 4gzv_A Hypothetical protein; A 64.4 9.1 0.00031 31.8 4.9 36 203-240 36-71 (142)
11 1t3g_A X-linked interleukin-1 57.8 7.4 0.00025 31.5 3.2 27 184-210 51-77 (159)
12 1fyx_A TOLL-like receptor 2; b 46.0 11 0.00038 29.9 2.4 29 183-211 43-71 (149)
13 2j67_A TOLL like receptor 10; 43.6 13 0.00043 30.8 2.5 29 183-211 73-101 (178)
14 3h16_A TIR protein; bacteria T 30.8 31 0.0011 27.1 2.8 29 183-211 56-84 (154)
15 4gqw_A CBS domain-containing p 30.6 49 0.0017 24.0 3.7 42 175-216 89-130 (152)
16 4esy_A CBS domain containing m 29.7 33 0.0011 26.3 2.7 43 174-216 21-63 (170)
17 3fio_A A cystathionine beta-sy 28.2 1.2E+02 0.0041 19.3 5.0 32 181-213 2-33 (70)
18 3j0a_A TOLL-like receptor 5; m 27.4 39 0.0013 33.1 3.4 30 182-211 710-739 (844)
19 3sl7_A CBS domain-containing p 22.5 77 0.0026 23.8 3.6 44 174-217 101-144 (180)
20 3i8n_A Uncharacterized protein 21.2 1.2E+02 0.004 21.9 4.3 37 177-214 78-114 (130)
21 3kpb_A Uncharacterized protein 20.1 86 0.0029 22.0 3.2 38 177-214 7-44 (122)
No 1
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=99.67 E-value=1.2e-16 Score=131.03 Aligned_cols=69 Identities=19% Similarity=0.213 Sum_probs=64.2
Q ss_pred ceEEEEEEcCCCcHHHHHHHHHhhCC-ceEEEeccCCceeEEEEcCCCCCCCeeEEeeeeEEEEeccccee
Q 025747 177 FTPHVITVKAGEDISSKIFAFSQQGP-RTVCILSASGAICNVTLRQPTMSGGTVTYEVLLIILYDPCNELY 246 (248)
Q Consensus 177 ftpHVIrV~~GEDV~~kI~~Faqq~~-rAicILSa~GaVSnVTLRqp~ssg~tvtyeGrFEILSLsGTiL~ 246 (248)
|++|+|||.+||||.++|.+||+++. ++.||++++|+|++|+||+++. ..+++|+|+|||+||+|||..
T Consensus 2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~-~~~~~~~g~~EIlsl~Gti~~ 71 (142)
T 2p6y_A 2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADS-VSTLQVSAPFEILSLSGTLTY 71 (142)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTS-SCEEEECSCEEEEEEEEEECS
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCC-CccEecCCcEEEEEeEEEEeC
Confidence 78999999999999999999999987 5899999999999999999995 447889999999999999965
No 2
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=99.66 E-value=1.5e-16 Score=132.04 Aligned_cols=74 Identities=18% Similarity=0.200 Sum_probs=67.2
Q ss_pred cCCCCceEEEEEEcCCCcHHHHHHHHHhhCC-ceEEEeccCCceeEEEEcCCCCCCCeeEEeeeeEEEEeccccee
Q 025747 172 VGGVGFTPHVITVKAGEDISSKIFAFSQQGP-RTVCILSASGAICNVTLRQPTMSGGTVTYEVLLIILYDPCNELY 246 (248)
Q Consensus 172 ~~g~~ftpHVIrV~~GEDV~~kI~~Faqq~~-rAicILSa~GaVSnVTLRqp~ssg~tvtyeGrFEILSLsGTiL~ 246 (248)
+.+..+++|+|||.+||||.++|.+||+++. ++.|||+++|+|++|+||+++. ..+++|+|+||||||+|||..
T Consensus 13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~-~~~~~~~g~~EIlsl~Gti~~ 87 (154)
T 2hx0_A 13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ-EATTSLTGTFEVISLNGTLEL 87 (154)
T ss_dssp CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTC-SSCEEEEEEEEEEEEEEEEET
T ss_pred CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCC-CccEecCCcEEEEEeeeeEeC
Confidence 4557889999999999999999999998776 5899999999999999999995 448899999999999999974
No 3
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=99.59 E-value=7.4e-16 Score=125.88 Aligned_cols=70 Identities=13% Similarity=0.088 Sum_probs=62.3
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhCCceEEEeccCCceeEEEEcCCCCCC---CeeEEeeeeEEEEecccceec
Q 025747 178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG---GTVTYEVLLIILYDPCNELYL 247 (248)
Q Consensus 178 tpHVIrV~~GEDV~~kI~~Faqq~~rAicILSa~GaVSnVTLRqp~ssg---~tvtyeGrFEILSLsGTiL~~ 247 (248)
++|+|||.+||||.++|.+||+++.+..|+++++|+|++|+||+++... ..++|+|+|||+||+|||..-
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~ 82 (143)
T 2dt4_A 10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLK 82 (143)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECC
Confidence 6999999999999999999999998766666999999999999988544 268899999999999999753
No 4
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=99.58 E-value=1e-15 Score=125.46 Aligned_cols=70 Identities=17% Similarity=0.096 Sum_probs=61.9
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhCCceEEEeccCCceeEEEEcCCCCCC---CeeEEeeeeEEEEecccceec
Q 025747 178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSG---GTVTYEVLLIILYDPCNELYL 247 (248)
Q Consensus 178 tpHVIrV~~GEDV~~kI~~Faqq~~rAicILSa~GaVSnVTLRqp~ssg---~tvtyeGrFEILSLsGTiL~~ 247 (248)
++|+|||.+||||.++|.+||+++.+..|+++++|+|++|+||+++... ..++++|+||||||+|||..-
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~ 82 (146)
T 2h6l_A 10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMK 82 (146)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECC
Confidence 6999999999999999999999988654445999999999999998655 278999999999999999753
No 5
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=99.55 E-value=4.4e-15 Score=122.69 Aligned_cols=70 Identities=17% Similarity=0.137 Sum_probs=62.6
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhCCceEEEeccCCceeEEEEcCCCCCCC---eeEEeeeeEEEEecccceec
Q 025747 178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGG---TVTYEVLLIILYDPCNELYL 247 (248)
Q Consensus 178 tpHVIrV~~GEDV~~kI~~Faqq~~rAicILSa~GaVSnVTLRqp~ssg~---tvtyeGrFEILSLsGTiL~~ 247 (248)
+.|+|||.+||||+++|.+||+++.+..|+++++|++++|+||+++.... .++|+|+|||+||+|||..-
T Consensus 16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~ 88 (149)
T 3htn_A 16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSM 88 (149)
T ss_dssp TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEcc
Confidence 68999999999999999999999998777779999999999999874332 68999999999999999763
No 6
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=99.22 E-value=1.7e-11 Score=100.92 Aligned_cols=69 Identities=9% Similarity=0.110 Sum_probs=59.7
Q ss_pred eEEEEEEcCCCcHHHHHHHHHhhCCceEEEeccCCceeEEEEcCCCCCCC---eeEEeeeeEEEEecccceec
Q 025747 178 TPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNVTLRQPTMSGG---TVTYEVLLIILYDPCNELYL 247 (248)
Q Consensus 178 tpHVIrV~~GEDV~~kI~~Faqq~~rAicILSa~GaVSnVTLRqp~ssg~---tvtyeGrFEILSLsGTiL~~ 247 (248)
+-+++||.+||||+++|.+||+++.+..++++++|++++++|+.++.... ..+++ +|||+||+|||-.-
T Consensus 13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~ 84 (147)
T 3hwu_A 13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWK 84 (147)
T ss_dssp TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcC
Confidence 35899999999999999999999998777779999999999998874332 56788 89999999999653
No 7
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=96.62 E-value=0.00088 Score=41.23 Aligned_cols=16 Identities=56% Similarity=0.881 Sum_probs=14.3
Q ss_pred cccCCCCCCCCCCCCc
Q 025747 150 SAKRHRGRPPGSGKKQ 165 (248)
Q Consensus 150 ~~kr~RGRP~GSk~k~ 165 (248)
..||+||||.|||||-
T Consensus 3 tpKrpRgRpkGSKNk~ 18 (26)
T 2ezd_A 3 TPKRPRGRPKGSKNKG 18 (26)
T ss_dssp SCCCCSSCCTTCCCCS
T ss_pred CCcCCCCCcCcccccC
Confidence 4699999999999984
No 8
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=82.13 E-value=1.8 Score=36.11 Aligned_cols=36 Identities=28% Similarity=0.299 Sum_probs=31.5
Q ss_pred ceEEEeccCCceeEEEEcCCCCCCCeeEEeeeeEEEEe
Q 025747 203 RTVCILSASGAICNVTLRQPTMSGGTVTYEVLLIILYD 240 (248)
Q Consensus 203 rAicILSa~GaVSnVTLRqp~ssg~tvtyeGrFEILSL 240 (248)
...=|||.-|.+.|++++ ++ ++.+++..|.|||.|=
T Consensus 36 n~lKIlSdDgtF~Ni~m~-~~-~~aiIt~~GtY~~~SD 71 (142)
T 4i95_A 36 NTFKVLSDDGRIVNFTIR-PG-TDAIITGYGTYRQISA 71 (142)
T ss_dssp EEEEEECTTSEEEEEECC-TT-SCCEEEEEEEEEEEET
T ss_pred ccEEEEcCCCcEEEEEEe-cC-CCcEEEEeEEEEecCC
Confidence 367899999999999999 44 6889999999999983
No 9
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=79.44 E-value=0.55 Score=37.42 Aligned_cols=13 Identities=46% Similarity=1.022 Sum_probs=6.2
Q ss_pred cccCCCCCCCCCC
Q 025747 103 KKKRGRPRKYTPD 115 (248)
Q Consensus 103 KkKRGRPRKY~pd 115 (248)
|+|+|||.||.++
T Consensus 4 ~~k~GRPtk~t~e 16 (140)
T 4dyq_A 4 EPKAGRPSDYMPE 16 (140)
T ss_dssp ------CCSCCTT
T ss_pred CCCCCCCCCCCHH
Confidence 8999999999876
No 10
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=64.40 E-value=9.1 Score=31.83 Aligned_cols=36 Identities=28% Similarity=0.218 Sum_probs=30.4
Q ss_pred ceEEEeccCCceeEEEEcCCCCCCCeeEEeeeeEEEEe
Q 025747 203 RTVCILSASGAICNVTLRQPTMSGGTVTYEVLLIILYD 240 (248)
Q Consensus 203 rAicILSa~GaVSnVTLRqp~ssg~tvtyeGrFEILSL 240 (248)
-..=|||.-|+..|++++. . ++.+++..|-|||.|=
T Consensus 36 ~~~KIlS~DgtF~N~~m~~-~-~~aiIt~yGtY~l~SD 71 (142)
T 4gzv_A 36 NTFKVLSDDGRIVNFTIIP-G-ADAIITGYGTYKQLTD 71 (142)
T ss_dssp EEEEEECTTSEEEEEECCT-T-SCCEEEEEEEEEEEET
T ss_pred CceEEECCCCcEEEEEEeC-C-CCcEEEEeEEEEecCC
Confidence 3578999999999999955 3 3678999999999983
No 11
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=57.79 E-value=7.4 Score=31.46 Aligned_cols=27 Identities=7% Similarity=0.140 Sum_probs=25.0
Q ss_pred EcCCCcHHHHHHHHHhhCCceEEEecc
Q 025747 184 VKAGEDISSKIFAFSQQGPRTVCILSA 210 (248)
Q Consensus 184 V~~GEDV~~kI~~Faqq~~rAicILSa 210 (248)
+.+|++|.+.|.+..++..+.|+|||-
T Consensus 51 ~~~G~~i~~~i~~~I~~Sr~~IvVlS~ 77 (159)
T 1t3g_A 51 LIPTGTYIEDVARCVDQSKRLIIVMTP 77 (159)
T ss_dssp CCCCTTHHHHHHHHHHTBSEEEEEECH
T ss_pred ccCccchHHHHHHHHHHcCEEEEEEcc
Confidence 679999999999999999999999985
No 12
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=45.99 E-value=11 Score=29.89 Aligned_cols=29 Identities=24% Similarity=0.276 Sum_probs=26.0
Q ss_pred EEcCCCcHHHHHHHHHhhCCceEEEeccC
Q 025747 183 TVKAGEDISSKIFAFSQQGPRTVCILSAS 211 (248)
Q Consensus 183 rV~~GEDV~~kI~~Faqq~~rAicILSa~ 211 (248)
.+.+|+++.+.|.+..++..+.|+|||-+
T Consensus 43 d~~~G~~~~~~i~~~i~~Sr~~I~VlS~~ 71 (149)
T 1fyx_A 43 DFIHGKWIIDNIIDSIEKSHKTVFVLSEN 71 (149)
T ss_dssp HCCSSSCHHHHHHHHHHHEEEEEEEECHH
T ss_pred cCCCchhHHHHHHHHHHHcCEEEEEeCcc
Confidence 37899999999999999999999999853
No 13
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=43.60 E-value=13 Score=30.79 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=25.8
Q ss_pred EEcCCCcHHHHHHHHHhhCCceEEEeccC
Q 025747 183 TVKAGEDISSKIFAFSQQGPRTVCILSAS 211 (248)
Q Consensus 183 rV~~GEDV~~kI~~Faqq~~rAicILSa~ 211 (248)
.+.+|++|.+.|.+..++..+.|+|||-+
T Consensus 73 D~~~G~~i~~~i~~aI~~Sr~~IvVlS~~ 101 (178)
T 2j67_A 73 YFDPGKSISENIVSFIEKSYKSIFVLSPN 101 (178)
T ss_dssp HCCTTSCHHHHHHHHHHTEEEEEEEECHH
T ss_pred cCCCCccHHHHHHHHHHhCCEEEEEeccc
Confidence 37799999999999999888999999853
No 14
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=30.79 E-value=31 Score=27.11 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=25.7
Q ss_pred EEcCCCcHHHHHHHHHhhCCceEEEeccC
Q 025747 183 TVKAGEDISSKIFAFSQQGPRTVCILSAS 211 (248)
Q Consensus 183 rV~~GEDV~~kI~~Faqq~~rAicILSa~ 211 (248)
.+.+|+++.+.|.+-.++..+.|+|+|-+
T Consensus 56 ~l~~G~~~~~~i~~ai~~s~~~i~v~S~~ 84 (154)
T 3h16_A 56 SLRPGDSLRRSIDKGLGSSRFGIVVLSTH 84 (154)
T ss_dssp EECTTCCHHHHHHHHHTSEEEEEEEEEHH
T ss_pred hCCCccHHHHHHHHHHHhCcEEEEEeCcc
Confidence 57899999999999888888899999855
No 15
>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}
Probab=30.57 E-value=49 Score=24.03 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=34.0
Q ss_pred CCceEEEEEEcCCCcHHHHHHHHHhhCCceEEEeccCCceeE
Q 025747 175 VGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICN 216 (248)
Q Consensus 175 ~~ftpHVIrV~~GEDV~~kI~~Faqq~~rAicILSa~GaVSn 216 (248)
.-|++.++.|.+.+++.+.+..|.+.+...++|+...|.+.-
T Consensus 89 ~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~G 130 (152)
T 4gqw_A 89 DLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVG 130 (152)
T ss_dssp HHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEE
T ss_pred HhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEE
Confidence 345666788999999999999999888888999987775543
No 16
>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}
Probab=29.66 E-value=33 Score=26.33 Aligned_cols=43 Identities=12% Similarity=0.172 Sum_probs=35.8
Q ss_pred CCCceEEEEEEcCCCcHHHHHHHHHhhCCceEEEeccCCceeE
Q 025747 174 GVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICN 216 (248)
Q Consensus 174 g~~ftpHVIrV~~GEDV~~kI~~Faqq~~rAicILSa~GaVSn 216 (248)
..-|+..++.|.+.+-|.+.+..+.+++-.++.|+...|.+--
T Consensus 21 ~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvG 63 (170)
T 4esy_A 21 RDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVG 63 (170)
T ss_dssp GGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEE
T ss_pred HHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEE
Confidence 3457778999999999999999999988889999988775543
No 17
>3fio_A A cystathionine beta-synthase domain protein fused to A Zn-ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} PDB: 3ghd_A
Probab=28.18 E-value=1.2e+02 Score=19.33 Aligned_cols=32 Identities=9% Similarity=0.216 Sum_probs=26.9
Q ss_pred EEEEcCCCcHHHHHHHHHhhCCceEEEeccCCc
Q 025747 181 VITVKAGEDISSKIFAFSQQGPRTVCILSASGA 213 (248)
Q Consensus 181 VIrV~~GEDV~~kI~~Faqq~~rAicILSa~Ga 213 (248)
++.|.+.+.|.+.+..+.+++...+.|+.. |-
T Consensus 2 ~~~v~~~~~~~~a~~~m~~~~~~~~pV~d~-~~ 33 (70)
T 3fio_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DE 33 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET-TE
T ss_pred CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CE
Confidence 578999999999998888888788888876 54
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=27.41 E-value=39 Score=33.07 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=27.0
Q ss_pred EEEcCCCcHHHHHHHHHhhCCceEEEeccC
Q 025747 182 ITVKAGEDISSKIFAFSQQGPRTVCILSAS 211 (248)
Q Consensus 182 IrV~~GEDV~~kI~~Faqq~~rAicILSa~ 211 (248)
=.+.+|++|++.|.+-.++..+.|||||-.
T Consensus 710 rd~~~G~~~~~~i~~~i~~sr~~i~vls~~ 739 (844)
T 3j0a_A 710 RDFVPGENRIANIQDAIWNSRKIVCLVSRH 739 (844)
T ss_dssp SSCCSSSCHHHHHHHHHHHSSEEEEEECTT
T ss_pred cccCCCchHHHHHHHHHHHhCeEEEEeccc
Confidence 347899999999999999999999999875
No 19
>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}
Probab=22.46 E-value=77 Score=23.82 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=35.1
Q ss_pred CCCceEEEEEEcCCCcHHHHHHHHHhhCCceEEEeccCCceeEE
Q 025747 174 GVGFTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAICNV 217 (248)
Q Consensus 174 g~~ftpHVIrV~~GEDV~~kI~~Faqq~~rAicILSa~GaVSnV 217 (248)
..-|++.++.|.+.+.+.+.+..|.+.+-+.+.|+...|.+.-+
T Consensus 101 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGi 144 (180)
T 3sl7_A 101 GDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGI 144 (180)
T ss_dssp HHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEE
T ss_pred HHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEE
Confidence 34566778899999999999988988888899999877765433
No 20
>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}
Probab=21.22 E-value=1.2e+02 Score=21.86 Aligned_cols=37 Identities=8% Similarity=0.180 Sum_probs=30.8
Q ss_pred ceEEEEEEcCCCcHHHHHHHHHhhCCceEEEeccCCce
Q 025747 177 FTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAI 214 (248)
Q Consensus 177 ftpHVIrV~~GEDV~~kI~~Faqq~~rAicILSa~GaV 214 (248)
|++ ++.|.+.+++.+.+..|.+.+-..+.|+...|.+
T Consensus 78 m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~ 114 (130)
T 3i8n_A 78 MRP-IQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTV 114 (130)
T ss_dssp SEE-CCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCE
T ss_pred hcC-CcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCE
Confidence 455 7899999999999999999888888888776643
No 21
>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*
Probab=20.07 E-value=86 Score=21.97 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=31.2
Q ss_pred ceEEEEEEcCCCcHHHHHHHHHhhCCceEEEeccCCce
Q 025747 177 FTPHVITVKAGEDISSKIFAFSQQGPRTVCILSASGAI 214 (248)
Q Consensus 177 ftpHVIrV~~GEDV~~kI~~Faqq~~rAicILSa~GaV 214 (248)
|++.++.|.+.+.+.+.+..|.+.+...+.|+...|-+
T Consensus 7 m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~ 44 (122)
T 3kpb_A 7 LSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKL 44 (122)
T ss_dssp CCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBE
T ss_pred hCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCE
Confidence 45667889999999999999998888889999866644
Done!