BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025749
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZS3|A Chain A, High Resolution Structure Of Mal D 2, The Thaumatin Like
Food Allergen From Apple
Length = 222
Score = 220 bits (561), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 109/220 (49%), Positives = 144/220 (65%), Gaps = 5/220 (2%)
Query: 30 ITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWSGRFWGRHGCRFDAS 89
IT N C + VWPG KP L+ GF+L + ++ P WSGRFWGR C DA+
Sbjct: 3 ITFTNNCPNTVWPGTLTGDQKPQLSLTGFELASKASRSVDAPSPWSGRFWGRTRCSTDAA 62
Query: 90 GRGRCATGDCG-GSLFCNGIGGSPPATLAEITLGQQ--QDFYDVSLVDGYNIAMSILPIR 146
G+ C T DCG G + CNG G PPATL EIT+ QD+YDVSLVDG+N+ MS+ P
Sbjct: 63 GKFTCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAPQG 122
Query: 147 GSGKCSYAGCVSDLNLMCPAGLQVRS-NSRVVACKSACFAFNSPRYCCTGSFGNPQSCKP 205
G+G+C + C +++N +CPA LQV++ + V++CKSAC AF +YCCT P++C P
Sbjct: 123 GTGECKPSSCPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCTPPNNTPETCPP 182
Query: 206 TAYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTFCP 244
T YS IF+ CP+AYSYAYDD S TC+G +Y++TFCP
Sbjct: 183 TEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 222
>pdb|2AHN|A Chain A, High Resolution Structure Of A Cherry Allergen Pru Av 2
Length = 222
Score = 218 bits (555), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 113/221 (51%), Positives = 140/221 (63%), Gaps = 5/221 (2%)
Query: 29 TITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWSGRFWGRHGCRFDA 88
TI+ N C + VWPG S KP L+ GF+L ++ + P W+GRFW R GC DA
Sbjct: 2 TISFKNNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTDA 61
Query: 89 SGRGRCATGDCG-GSLFCNGIGGSPPATLAEITL--GQQQDFYDVSLVDGYNIAMSILPI 145
SG+ CAT DC G + CNG G PPATLAE + G QDFYDVSLVDG+N+ MS+ P
Sbjct: 62 SGKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPMSVTPQ 121
Query: 146 RGSGKCSYAGCVSDLNLMCPAGLQVR-SNSRVVACKSACFAFNSPRYCCTGSFGNPQSCK 204
G+G C A C +++N +CP+ LQ + S+ VVAC SAC F +P+YCCT P++C
Sbjct: 122 GGTGDCKTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNTPETCP 181
Query: 205 PTAYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTFCP 244
PT YS IF ACP AYSYAYDD TC G NY +TFCP
Sbjct: 182 PTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFCP 222
>pdb|1DU5|A Chain A, The Crystal Structure Of Zeamatin.
pdb|1DU5|B Chain B, The Crystal Structure Of Zeamatin
Length = 206
Score = 160 bits (404), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 117/220 (53%), Gaps = 19/220 (8%)
Query: 29 TITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPP-LWSGRFWGRHGCRFD 87
T+ N+C VW G L RG +++ I P + R W R GC+FD
Sbjct: 2 VFTVVNQCPFTVWAASVPVGGGRQLNRG-------ESWRITAPAGTTAARIWARTGCKFD 54
Query: 88 ASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQ--QQDFYDVSLVDGYNIAMSILPI 145
ASGRG C TGDCGG L C G G + P TLAE L Q DF+D+SL+DG+N+ MS LP
Sbjct: 55 ASGRGSCRTGDCGGVLQCTGYGRA-PNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPD 113
Query: 146 RGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKP 205
GSG C D+N CPA L+ C +AC F YCC GS N C P
Sbjct: 114 GGSGCSRGPRCAVDVNARCPAELRQDG-----VCNNACPVFKKDEYCCVGSAAN--DCHP 166
Query: 206 TAYSRIFKAACPRAYSYAYDDPTSIATC-TGSNYLLTFCP 244
T YSR FK CP AYSY DD TS TC G+NY + FCP
Sbjct: 167 TNYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFCP 206
>pdb|4H8T|A Chain A, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
pdb|4H8T|B Chain B, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
Length = 198
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 98/220 (44%), Positives = 121/220 (55%), Gaps = 27/220 (12%)
Query: 29 TITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPP-LWSGRFWGRHGCRFD 87
T + NKC + VW AS G GG +L +++TI + P + R WGR C FD
Sbjct: 2 TFDILNKCTYTVW--AAASPG------GGRRLDSGQSWTITVNPGTTNARIWGRTSCTFD 53
Query: 88 ASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQQ--DFYDVSLVDGYNIAMSILPI 145
A+GRG+C TGDC G L C G GSPP TLAE L Q D+ D+SLVDG+NI M
Sbjct: 54 ANGRGKCETGDCNGLLECQGY-GSPPNTLAEFALNQPNNLDYIDISLVDGFNIPMDFSGC 112
Query: 146 RGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKP 205
RG C D+N CP+ L+ C + C F + YCCT P SC P
Sbjct: 113 RG------IQCSVDINGQCPSELKAPG-----GCNNPCTVFKTNEYCCTDG---PGSCGP 158
Query: 206 TAYSRIFKAACPRAYSYAYDDPTSIATC-TGSNYLLTFCP 244
T YS+ FK CP AYSY DD TS+ TC +G+NY +TFCP
Sbjct: 159 TTYSKFFKDRCPDAYSYPQDDKTSLFTCPSGTNYKVTFCP 198
>pdb|1Z3Q|A Chain A, Resolution Of The Structure Of The Allergenic And
Antifungal Banana Fruit Thaumatin-Like Protein At 1.7a
Length = 200
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 114/219 (52%), Gaps = 23/219 (10%)
Query: 29 TITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWSGRFWGRHGCRFDA 88
T + N+C + VW G+ L + + N T GR WGR GC FD
Sbjct: 2 TFEIVNRCSYTVWAAAVPGGGRQLNQGQSWTINVNAGTT-------GGRIWGRTGCSFDG 54
Query: 89 SGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQ--QQDFYDVSLVDGYNIAMSILPIR 146
SGRGRC TGDCGG L C G+PP TLAE L Q DF+D+SLVDG+N+ M P
Sbjct: 55 SGRGRCQTGDCGGVLSCTAY-GNPPNTLAEFALNQFNNLDFFDISLVDGFNVPMDFSPT- 112
Query: 147 GSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPT 206
SG C C +D+N CP L+ C + C F + +YCC N +C PT
Sbjct: 113 -SGGCRGIRCAADINGQCPGALKAPG-----GCNNPCTVFKTDQYCC-----NSGACSPT 161
Query: 207 AYSRIFKAACPRAYSYAYDDPTSIATC-TGSNYLLTFCP 244
YS+ FK CP AYSY DD T+ TC G+NY + FCP
Sbjct: 162 DYSQFFKRNCPDAYSYPKDDQTTTFTCPGGTNYRVVFCP 200
>pdb|2I0W|A Chain A, Crystal Structure Analysis Of Np24-I, A Thaumatin-Like
Protein
Length = 207
Score = 153 bits (386), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 97/223 (43%), Positives = 120/223 (53%), Gaps = 24/223 (10%)
Query: 29 TITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLP-PLWSGRFWGRHGCRFD 87
TI + N C + VW +A P+ GG +L + + I P R WGR GC F+
Sbjct: 2 TIEVRNNCPYTVW-----AASTPI--GGGRRLNRGQTWVINAPRGTKMARIWGRTGCNFN 54
Query: 88 ASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQ--QQDFYDVSLVDGYNIAMSILPI 145
A+GRG C TGDCGG L C G G PP TLAE L Q DF+D+SLVDG+NI M+ P
Sbjct: 55 AAGRGTCQTGDCGGVLQCTGW-GKPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPT 113
Query: 146 RGS-GKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCK 204
+ S GKC C +++N CP L+V C + C F +YCCT C
Sbjct: 114 KPSGGKCHAIHCTANINGECPRALKVPG-----GCNNPCTTFGGQQYCCTQG-----PCG 163
Query: 205 PTAYSRIFKAACPRAYSYAYDDPTSIATCTG--SNYLLTFCPR 245
PT S+ FK CP AYSY DDPTS TC G +NY + FCP
Sbjct: 164 PTELSKFFKKRCPDAYSYPQDDPTSTFTCPGGSTNYRVVFCPN 206
>pdb|1PCV|A Chain A, Crystal Structure Of Osmotin, A Plant Antifungal Protein
pdb|1PCV|B Chain B, Crystal Structure Of Osmotin, A Plant Antifungal Protein
Length = 205
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/222 (43%), Positives = 119/222 (53%), Gaps = 24/222 (10%)
Query: 29 TITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPP-LWSGRFWGRHGCRFD 87
TI + N C + VW +A P+ GG +L + + I P R WGR C F+
Sbjct: 2 TIEVRNNCPYTVW-----AASTPI--GGGRRLDRGQTWVINAPRGTKMARVWGRTNCNFN 54
Query: 88 ASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQQ--DFYDVSLVDGYNIAMSILPI 145
A+GRG C TGDCGG L C G G PP TLAE L Q DF+D+SLVDG+NI M+ P
Sbjct: 55 AAGRGTCQTGDCGGVLQCTGW-GKPPNTLAEYALDQFSGLDFWDISLVDGFNIPMTFAPT 113
Query: 146 RGS-GKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCK 204
S GKC C +++N CP L+V C + C F +YCCT C
Sbjct: 114 NPSGGKCHAIHCTANINGECPRELRVPG-----GCNNPCTTFGGQQYCCTQG-----PCG 163
Query: 205 PTAYSRIFKAACPRAYSYAYDDPTSIATCTG--SNYLLTFCP 244
PT +S+ FK CP AYSY DDPTS TC G +NY + FCP
Sbjct: 164 PTFFSKFFKQRCPDAYSYPQDDPTSTFTCPGGSTNYRVIFCP 205
>pdb|1AUN|A Chain A, Pathogenesis-Related Protein 5d From Nicotiana Tabacum
Length = 208
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/221 (41%), Positives = 113/221 (51%), Gaps = 24/221 (10%)
Query: 30 ITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPP-LWSGRFWGRHGCRFDA 88
+ N C + VW G L RG +++ PP R WGR C FD
Sbjct: 4 FEVHNNCPYTVWAAATPVGGGRRLERG-------QSWWFWAPPGTKMARIWGRTNCNFDG 56
Query: 89 SGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQ--QQDFYDVSLVDGYNIAMSILPIR 146
+GRG C TGDCGG L C G G PP TLAE L Q DF+D+S++DG+NI MS P +
Sbjct: 57 AGRGWCQTGDCGGVLECKGW-GKPPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPTK 115
Query: 147 -GSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKP 205
G GKC C +++N CP L+V C + C F +YCCT C P
Sbjct: 116 PGPGKCHGIQCTANINGECPGSLRVPG-----GCNNPCTTFGGQQYCCTQG-----PCGP 165
Query: 206 TAYSRIFKAACPRAYSYAYDDPTSIATCTG--SNYLLTFCP 244
T SR FK CP AYSY DDPTS TCT ++Y + FCP
Sbjct: 166 TELSRWFKQRCPDAYSYPQDDPTSTFTCTSWTTDYKVMFCP 206
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 147 bits (370), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 114/219 (52%), Gaps = 18/219 (8%)
Query: 29 TITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPP-LWSGRFWGRHGCRFD 87
T + N+C + VW AS G L GG +L +++TI + P G+ W R C FD
Sbjct: 2 TFEIVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFD 59
Query: 88 ASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQ-QDFYDVSLVDGYNIAMSILPI- 145
SGRG C TGDCGG L C G PP TLAE +L Q +D+ D+S + G+N+ M P
Sbjct: 60 DSGRGICRTGDCGGLLQCKRFG-RPPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSPTT 118
Query: 146 RGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKP 205
RG C C +D+ CPA L+ C AC F + YCCT C P
Sbjct: 119 RG---CRGVRCAADIVGQCPAKLKAPGG----GCNDACTVFQTSEYCCTTG-----KCGP 166
Query: 206 TAYSRIFKAACPRAYSYAYDDPTSIATCTGSNYLLTFCP 244
T YSR FK CP A+SY D PT++ SNY +TFCP
Sbjct: 167 TEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 300 K
Length = 207
Score = 144 bits (364), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 113/219 (51%), Gaps = 18/219 (8%)
Query: 29 TITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPP-LWSGRFWGRHGCRFD 87
T + N+C + VW AS G L GG +L +++TI + P G+ W R C FD
Sbjct: 2 TFEIVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFD 59
Query: 88 ASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQ-QDFYDVSLVDGYNIAMSILPI- 145
SG G C TGDCGG L C G PP TLAE +L Q +D+ D+S + G+N+ M P
Sbjct: 60 DSGSGICKTGDCGGLLRCKRFG-RPPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSPTT 118
Query: 146 RGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKP 205
RG C C +D+ CPA L+ C AC F + YCCT C P
Sbjct: 119 RG---CRGVRCAADIVGQCPAKLKAPGG----GCNDACTVFQTSEYCCTTG-----KCGP 166
Query: 206 TAYSRIFKAACPRAYSYAYDDPTSIATCTGSNYLLTFCP 244
T YSR FK CP A+SY D PT++ SNY +TFCP
Sbjct: 167 TEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|2BLR|A Chain A, Thaumatin Before A High Dose X-Ray "burn"
pdb|2BLU|A Chain A, Thaumatin After A High Dose X-Ray "burn"
pdb|2VHK|A Chain A, Atomic Resolution (0.94 A) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 22c
pdb|2WBZ|A Chain A, 1.6 A Structure Of Thaumatin Crystallized Without Tartrate
At 4 C
pdb|3N02|A Chain A, Thaumatic Crystals Grown In Loops/micromounts
pdb|3N03|A Chain A, Thaumatin Crystals Grown From Drops
pdb|4AXU|A Chain A, Crystal Structure Of Thaumatin From An Auto-Harvested
Crystal, Control Experiment
Length = 206
Score = 144 bits (364), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 114/219 (52%), Gaps = 18/219 (8%)
Query: 29 TITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPP-LWSGRFWGRHGCRFD 87
T + N+C + VW AS G L GG +L +++TI + P G+ W R C FD
Sbjct: 2 TFEIVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFD 59
Query: 88 ASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQ-QDFYDVSLVDGYNIAMSILPI- 145
SG G C TGDCGG L C G PP TLAE +L Q +D+ D+S + G+N+ M+ P
Sbjct: 60 DSGSGICKTGDCGGLLRCKRFG-RPPTTLAEFSLNQYGKDYIDISNIKGFNVPMNFSPTT 118
Query: 146 RGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKP 205
RG C C +D+ CPA L+ C AC F + YCCT C P
Sbjct: 119 RG---CRGVRCAADIVGQCPAKLKAPGG----GCNDACTVFQTSEYCCTTG-----KCGP 166
Query: 206 TAYSRIFKAACPRAYSYAYDDPTSIATCTGSNYLLTFCP 244
T YSR FK CP A+SY D PT++ SNY +TFCP
Sbjct: 167 TEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|1KWN|A Chain A, 1.2 A Structure Of Thaumatin Crystallized In Gel
pdb|1LXZ|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LY0|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LR2|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1LR3|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1PP3|A Chain A, Structure Of Thaumatin In A Hexagonal Space Group
pdb|1PP3|B Chain B, Structure Of Thaumatin In A Hexagonal Space Group
pdb|2OQN|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1THI|A Chain A, Crystal Structures Of Two Intensely Sweet Proteins
pdb|2VHR|A Chain A, Atomic Resolution (0.95a) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 4 C
pdb|2VI1|A Chain A, Atomic Resolution (1.04 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 22 C.
pdb|2VI2|A Chain A, Atomic Resolution (1.05 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 4c
pdb|2VI3|A Chain A, Atomic Resolution (0.98 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 20 C
pdb|2VI4|A Chain A, Atomic Resolution (1.10 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 6 C.
pdb|2VU6|A Chain A, Atomic Resolution (0.95 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 19 C.
pdb|2VU7|A Chain A, Atomic Resolution (1.08 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 4 C
pdb|3QY5|A Chain A, Microfluidic Crystallization Of Thaumatin Using The
Crystal Former
pdb|4AXR|A Chain A, Crystal Structure Of Thaumatin From A Auto-Harvested
Crystal
pdb|4BAL|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-
Hydroxymethyltriazoledipicolinate Complex At 1.30 A
Resolution.
pdb|4BAR|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-Hydroxyethyltriazole
Dipicolinate Complex At 1.20 A Resolution.
pdb|3ZEJ|A Chain A, Thaumatin Structure Determined At Room Temperature By
In-Situ Diffraction In Chipx
Length = 207
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 114/219 (52%), Gaps = 18/219 (8%)
Query: 29 TITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPP-LWSGRFWGRHGCRFD 87
T + N+C + VW AS G L GG +L +++TI + P G+ W R C FD
Sbjct: 2 TFEIVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFD 59
Query: 88 ASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQ-QDFYDVSLVDGYNIAMSILPI- 145
SG G C TGDCGG L C G PP TLAE +L Q +D+ D+S + G+N+ M+ P
Sbjct: 60 DSGSGICKTGDCGGLLRCKRFG-RPPTTLAEFSLNQYGKDYIDISNIKGFNVPMNFSPTT 118
Query: 146 RGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKP 205
RG C C +D+ CPA L+ C AC F + YCCT C P
Sbjct: 119 RG---CRGVRCAADIVGQCPAKLKAPGG----GCNDACTVFQTSEYCCTTG-----KCGP 166
Query: 206 TAYSRIFKAACPRAYSYAYDDPTSIATCTGSNYLLTFCP 244
T YSR FK CP A+SY D PT++ SNY +TFCP
Sbjct: 167 TEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|1THV|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|2PE7|A Chain A, Thaumatin From Thaumatococcus Danielli In Complex With
Tris- Dipicolinate Europium
pdb|3E3S|A Chain A, Structure Of Thaumatin With The Magic Triangle I3c
pdb|3AL7|A Chain A, Recombinant Thaumatin I At 1.1 A
pdb|3ALD|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin I At
1.10 A
pdb|3VHF|A Chain A, Plant Thaumatin I At Ph 8.0
pdb|3VJQ|A Chain A, Recombinant Thaumatin At Ph 8.0 With Hydrogen Atoms
pdb|3VHG|A Chain A, Recombinant Thaumatin I At Ph 8.0
pdb|3V7V|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V82|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V84|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V87|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V88|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V8A|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCE|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCG|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCH|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCI|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCJ|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCK|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|4DC5|A Chain A, Crystal Structure Of Thaumatin Unexposed To Excessive
Sonicc Imaging Laser Dose.
pdb|4DC6|A Chain A, Crystal Structure Of Thaumatin Exposed To Excessive Sonicc
Imaging Laser Dose
Length = 207
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/219 (40%), Positives = 113/219 (51%), Gaps = 18/219 (8%)
Query: 29 TITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPP-LWSGRFWGRHGCRFD 87
T + N+C + VW AS G L GG +L +++TI + P G+ W R C FD
Sbjct: 2 TFEIVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFD 59
Query: 88 ASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQ-QDFYDVSLVDGYNIAMSILPI- 145
SG G C TGDCGG L C G PP TLAE +L Q +D+ D+S + G+N+ M P
Sbjct: 60 DSGSGICKTGDCGGLLRCKRFG-RPPTTLAEFSLNQYGKDYIDISNIKGFNVPMDFSPTT 118
Query: 146 RGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKP 205
RG C C +D+ CPA L+ C AC F + YCCT C P
Sbjct: 119 RG---CRGVRCAADIVGQCPAKLKAPGG----GCNDACTVFQTSEYCCTTG-----KCGP 166
Query: 206 TAYSRIFKAACPRAYSYAYDDPTSIATCTGSNYLLTFCP 244
T YSR FK CP A+SY D PT++ SNY +TFCP
Sbjct: 167 TEYSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|2D8O|A Chain A, Structure Of Vil-Thaumatin
Length = 207
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 113/219 (51%), Gaps = 18/219 (8%)
Query: 29 TITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPP-LWSGRFWGRHGCRFD 87
T + N+C + VW AS G L GG +L +++TI + P G+ W R C FD
Sbjct: 2 TFEIVNRCSYTVWAA--ASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXFD 59
Query: 88 ASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQ-QDFYDVSLVDGYNIAMSILPI- 145
SG G C TGDCGG L C G PP TLAE +L Q +D+ D+S + G+N+ M+ P
Sbjct: 60 DSGSGICKTGDCGGLLRCKRFG-RPPTTLAEFSLNQXGKDYIDISNIKGFNVPMNFSPTT 118
Query: 146 RGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKP 205
RG C C +D+ CPA L+ C AC F + YCCT C P
Sbjct: 119 RG---CRGVRCAADIVGQCPAKLKAPGG----GCNDACTVFQTSEYCCTTG-----KCGP 166
Query: 206 TAYSRIFKAACPRAYSYAYDDPTSIATCTGSNYLLTFCP 244
T SR FK CP A+SY D PT++ SNY +TFCP
Sbjct: 167 TEXSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|2D8P|A Chain A, Structure Of Hyper-Vil-Thaumatin
Length = 207
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/219 (40%), Positives = 111/219 (50%), Gaps = 18/219 (8%)
Query: 29 TITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPP-LWSGRFWGRHGCRFD 87
T + N+C VW AS G L GG +L +++TI + P G+ W R C FD
Sbjct: 2 TFEIVNRCSXTVW--AAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXFD 59
Query: 88 ASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQ-QDFYDVSLVDGYNIAMSILPI- 145
SG G C TGDCGG L C G PP TLAE +L Q +D D+S + G+N+ M+ P
Sbjct: 60 DSGSGICKTGDCGGLLRCKRFG-RPPTTLAEFSLNQXGKDXIDISNIKGFNVPMNFSPTT 118
Query: 146 RGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKP 205
RG C C +D+ CPA L+ C AC F + YCCT C P
Sbjct: 119 RG---CRGVRCAADIVGQCPAKLKAPGG----GCNDACTVFQTSEYCCTTG-----KCGP 166
Query: 206 TAYSRIFKAACPRAYSYAYDDPTSIATCTGSNYLLTFCP 244
T SR FK CP A+SY D PT++ SNY +TFCP
Sbjct: 167 TEXSRFFKRLCPDAFSYVLDKPTTVTCPGSSNYRVTFCP 205
>pdb|3G7M|A Chain A, Structure Of The Thaumatin-Like Xylanase Inhibitor Tlxi
Length = 151
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 73/131 (55%), Gaps = 9/131 (6%)
Query: 30 ITLFNKCEHPVWPGIQASAGKPLLARGG--FKLPPNKAYTIRLPPLWSGRFWGRHGCRFD 87
+T+ N+C VWP + +LA+GG +L P ++++ P + S WGR GC FD
Sbjct: 3 LTITNRCHFTVWPAVAL-----VLAQGGGGTELHPGASWSLDTPVIGSQYIWGRTGCSFD 57
Query: 88 ASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQQDFYDV-SLVDGYNIAMSILPIR 146
+G+GRC TGDCGGS G + P T+AE+++ Q Y V S + G+N+ M++
Sbjct: 58 RAGKGRCQTGDCGGSSLTCGGNPAVPTTMAEVSVLQGNYTYGVTSTLKGFNVPMNLKCSS 117
Query: 147 GSG-KCSYAGC 156
G C AGC
Sbjct: 118 GDALPCRKAGC 128
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 43 GIQASAGKPLLA-----RGGFKLPPNKAYTIRLPPLWSGRF 78
I+ + GKP A R F +P N T R P LWS F
Sbjct: 215 AIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKPELWSDNF 255
>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure
Length = 227
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 84 CRFDASGRGRCATGDCGGSLFCNGI 108
C D S R +GD GG L CNG+
Sbjct: 167 CAGDPSKRKNSFSGDSGGPLVCNGV 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,333,368
Number of Sequences: 62578
Number of extensions: 306414
Number of successful extensions: 852
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 756
Number of HSP's gapped (non-prelim): 24
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)