Query 025749
Match_columns 248
No_of_seqs 139 out of 702
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 09:08:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09218 TLP-PA allergenic/anti 100.0 3.1E-86 6.7E-91 582.1 18.6 215 29-243 1-219 (219)
2 smart00205 THN Thaumatin famil 100.0 4.9E-84 1.1E-88 568.1 17.9 214 30-244 1-218 (218)
3 cd09219 TLP-F thaumatin-like p 100.0 1.3E-82 2.7E-87 561.2 17.8 211 30-244 1-229 (229)
4 PF00314 Thaumatin: Thaumatin 100.0 5.4E-80 1.2E-84 541.8 9.4 210 34-244 1-213 (213)
5 cd09215 Thaumatin-like the swe 100.0 1.1E-59 2.5E-64 395.2 14.6 153 30-243 1-157 (157)
6 cd09217 TLP-P thaumatin and al 100.0 3.2E-52 6.9E-57 348.4 14.1 148 30-244 1-151 (151)
7 cd08961 GH64-TLP-SF glycoside 100.0 5.1E-51 1.1E-55 341.8 14.1 150 30-242 1-153 (153)
8 PF04681 Bys1: Blastomyces yea 97.7 0.00041 8.8E-09 58.7 10.9 102 29-158 12-121 (155)
9 cd09216 GH64-LPHase-like glyco 95.7 0.032 7E-07 53.0 7.3 109 29-145 2-142 (353)
10 cd09220 GH64-GluB-like glycosi 94.4 0.21 4.6E-06 47.8 8.6 111 29-145 2-145 (369)
11 cd09214 GH64-like glycosyl hyd 69.9 3 6.4E-05 39.3 2.0 31 116-146 125-155 (319)
12 cd05468 pVHL von Hippel-Landau 68.2 9.3 0.0002 31.6 4.5 51 26-82 7-57 (141)
13 PF06282 DUF1036: Protein of u 63.6 12 0.00027 29.9 4.2 41 28-68 4-44 (115)
14 cd09214 GH64-like glycosyl hyd 58.0 5.9 0.00013 37.3 1.7 22 206-227 276-299 (319)
15 PF01847 VHL: von Hippel-Linda 55.5 13 0.00028 31.6 3.2 50 25-80 12-61 (156)
16 cd09220 GH64-GluB-like glycosi 53.5 7.8 0.00017 37.3 1.7 22 206-227 321-344 (369)
17 PF07172 GRP: Glycine rich pro 50.5 13 0.00029 28.9 2.3 19 12-30 10-28 (95)
18 PHA03094 dUTPase; Provisional 49.3 22 0.00047 29.5 3.5 32 54-85 32-69 (144)
19 cd09216 GH64-LPHase-like glyco 46.8 11 0.00025 36.0 1.6 22 206-227 310-333 (353)
20 PRK09918 putative fimbrial cha 44.1 73 0.0016 28.3 6.3 47 24-70 38-90 (230)
21 PRK02710 plastocyanin; Provisi 42.9 1.1E+02 0.0023 24.2 6.5 16 55-70 46-61 (119)
22 PRK15188 fimbrial chaperone pr 40.6 94 0.002 27.8 6.4 47 24-70 41-94 (228)
23 TIGR03096 nitroso_cyanin nitro 37.6 75 0.0016 26.4 4.9 26 58-85 94-119 (135)
24 COG3121 FimC P pilus assembly 34.9 1.4E+02 0.003 26.6 6.7 47 24-70 41-95 (235)
25 PF07172 GRP: Glycine rich pro 33.0 45 0.00097 25.9 2.8 19 4-22 6-24 (95)
26 PF15240 Pro-rich: Proline-ric 30.4 30 0.00066 30.1 1.6 11 6-16 2-12 (179)
27 PF11142 DUF2917: Protein of u 29.2 62 0.0013 23.1 2.8 23 58-80 2-29 (63)
28 PF02495 7kD_coat: 7kD viral c 28.9 98 0.0021 21.6 3.7 14 25-39 31-44 (59)
29 PF01356 A_amylase_inhib: Alph 28.4 76 0.0017 23.3 3.1 37 30-69 17-53 (68)
30 PF07732 Cu-oxidase_3: Multico 27.9 93 0.002 24.6 3.9 54 27-80 35-95 (117)
31 PLN02547 dUTP pyrophosphatase 27.5 83 0.0018 26.5 3.7 30 55-84 44-79 (157)
32 PHA02703 ORF007 dUTPase; Provi 27.0 83 0.0018 26.8 3.7 38 48-85 34-77 (165)
33 PF00947 Pico_P2A: Picornaviru 26.6 25 0.00054 29.0 0.4 17 90-106 83-99 (127)
34 PF05991 NYN_YacP: YacP-like N 25.7 23 0.0005 29.9 0.0 10 132-141 2-11 (166)
35 cd00407 Urease_beta Urease bet 24.1 2.3E+02 0.0049 22.5 5.3 58 23-80 17-92 (101)
36 PF10633 NPCBM_assoc: NPCBM-as 23.7 1.4E+02 0.0031 21.3 4.0 19 24-42 5-23 (78)
37 TIGR00576 dut deoxyuridine 5'- 23.0 1.2E+02 0.0025 24.9 3.7 30 55-84 28-63 (141)
38 TIGR00192 urease_beta urease, 23.0 2.4E+02 0.0053 22.4 5.3 58 23-80 17-92 (101)
39 PF05726 Pirin_C: Pirin C-term 22.9 93 0.002 23.9 3.0 26 58-83 4-29 (104)
40 PRK15211 fimbrial chaperone pr 22.8 2.8E+02 0.0062 24.7 6.4 47 24-70 36-89 (229)
41 PF14874 PapD-like: Flagellar- 21.1 2.2E+02 0.0048 21.1 4.7 48 23-70 19-69 (102)
42 cd07557 trimeric_dUTPase Trime 20.2 1.3E+02 0.0028 22.1 3.2 28 57-84 13-46 (92)
43 TIGR03096 nitroso_cyanin nitro 20.1 2.7E+02 0.0059 23.1 5.3 62 5-70 6-75 (135)
No 1
>cd09218 TLP-PA allergenic/antifungal thaumatin-like proteins: plant and animal homologs. This subfamily is represented by the thaumatin-like proteins (TLPs), Cherry Allergen Pru Av 2 TLP, Peach PpAZ44 TLP (a propylene-induced TLP in abscission), the Caenorhabditis elegans thaumatin family member (thn-6), and other plant and animal homologs. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Due to their inducible expression by environmental stresses such as pathogen/pest attack, drought and cold, plant TLPs are classified as the pathogenesis-related (PR) protein family 5 (PR5). Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3; Japanese cedar, Cry j3). TLPs are three-domain, crescent-fold structures with either an electronegative, ele
Probab=100.00 E-value=3.1e-86 Score=582.09 Aligned_cols=215 Identities=66% Similarity=1.306 Sum_probs=207.3
Q ss_pred EEEEEeCCCCcccceeecCCCCccccCCceeeCCCCeeEEecCCCCceeEEeeeccccCCCCCcccccCCCCCcccccCC
Q 025749 29 TITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGI 108 (248)
Q Consensus 29 t~ti~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~WsGriWaRtgCs~d~~g~~~C~TGdCgg~l~C~g~ 108 (248)
+|||+|||+||||||+++++|++++..+||+|+||++++|++|+.|+|||||||||+||+.|+++|+||||+|.|+|++.
T Consensus 1 tfti~N~C~~tVWp~~~~~~g~~~l~~gGf~L~~g~s~~~~vp~~WsGriWaRTgC~~~~~g~~~C~TGDCgg~l~C~g~ 80 (219)
T cd09218 1 TFTIYNKCPFTVWPGILGNAGHPQLGGGGFELAPGQSRTIDAPSGWSGRFWGRTGCSFDSSGKGSCATGDCGGGLECNGA 80 (219)
T ss_pred CEEEEECCCCCccceecCCCCCCCCCCCCEEcCCCCeEEEeCCCCcceeeeeccCCCCCCCCccccccCCCCCeeecCCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCcceeEEeec--CCCceeeeccccCccccceeccCCCCCCCCCCCccccccccCCcCccccc-CCeeeeccchhhh
Q 025749 109 GGSPPATLAEITLG--QQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRS-NSRVVACKSACFA 185 (248)
Q Consensus 109 ~g~ppaTlaEftl~--~~~d~YDVSlVdG~NlP~~i~P~~~~~~C~~~~C~~dl~~~CP~~l~v~~-~g~~v~C~SaC~~ 185 (248)
++.||+|||||||+ +++|||||||||||||||+|+|+++.+.|+.++|.+|||..||.||+|++ +|+||||||||.+
T Consensus 81 ~g~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C~~~~C~~din~~CP~~L~v~~~~g~vv~C~SaC~~ 160 (219)
T cd09218 81 GGAPPATLAEFTLGGSGGQDFYDVSLVDGYNLPVSITPQGGSGGCRTAGCVADLNAVCPAELQVKNSGGRVVACKSACLA 160 (219)
T ss_pred CCCCCceeEEEEeccCCCCcceeeeeeccccCCEEEEecCCCCCCCCCcccCcccccCCHHHeeccCCCcEeeecCHHHh
Confidence 88999999999994 67899999999999999999998766689999999999999999999987 7899999999999
Q ss_pred cCCCCcccCCCCCCCCCCCCchhhHHHHhhCCCcccCCCCCCCCceeecCC-CeEEEec
Q 025749 186 FNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTFC 243 (248)
Q Consensus 186 ~~~d~~CC~g~~~~~~~C~pt~ys~~fK~~CP~AYsya~Dd~tstftC~~~-~y~vtFC 243 (248)
|++|||||+|+|++|++|+|+.||++||++||+||+|||||.+|+|+|+++ +|+||||
T Consensus 161 f~~~~~CC~g~~~~p~~C~pt~ys~~FK~~CP~Aysya~Dd~~s~~tC~~~~~Y~I~FC 219 (219)
T cd09218 161 FNTDEYCCRGAYGTPETCKPTTYSRLFKNACPQAYSYAYDDPTSTFTCSSGANYVITFC 219 (219)
T ss_pred hCCccceecCCCCCCCcCCCcchhHHHHhhCccccccCCCCCCcceEcCCCCCEEEEeC
Confidence 999999999999999999999999999999999999999999999999974 9999998
No 2
>smart00205 THN Thaumatin family. The thaumatin family gathers proteins related to plant pathogenesis. The thaumatin family includes very basic members with extracellular and vacuolar localization. Thaumatin itsel is a potent sweet-tasting protein. Several members of this family display significant in vitro activity of inhibiting hyphal growth or spore germination of various fungi probably by a membrane permeabilizing mechanism.
Probab=100.00 E-value=4.9e-84 Score=568.08 Aligned_cols=214 Identities=61% Similarity=1.154 Sum_probs=205.8
Q ss_pred EEEEeCCCCcccceeecCCCCccccCCceeeCCCCeeEEecCCCCc-eeEEeeeccccCCCCCcccccCCCCCcccccCC
Q 025749 30 ITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWS-GRFWGRHGCRFDASGRGRCATGDCGGSLFCNGI 108 (248)
Q Consensus 30 ~ti~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~Ws-GriWaRtgCs~d~~g~~~C~TGdCgg~l~C~g~ 108 (248)
|||+|||+|||||+++++ |++++..+||+|+||+++++.+|++|+ |||||||||+||++|+++|+||||+|+++|++.
T Consensus 1 fti~N~C~~tVWp~~~~~-g~~~l~~gGf~L~~g~s~~~~~p~~w~sGriW~RtgC~~d~~G~~~C~TGdCgG~l~C~g~ 79 (218)
T smart00205 1 FEFVNNCPYTVWAAALPS-GKPQLSGGGFELNSGASWQLDAPPGTKMGRIWARTGCNFDASGRGRCATGDCGGVLQCNGW 79 (218)
T ss_pred CEEEcCCCCceeceecCC-CCcccCCCcEecCCCCeEEEECCCCCccceEecccCCCcCCCCccccccCCCCCeeecCCC
Confidence 799999999999999998 999888899999999999999999996 999999999999999999999999999999988
Q ss_pred CCCCCcceeEEeec--CCCceeeeccccCccccceeccCCCCCCCCCCCccccccccCCcCcccccCCeeeeccchhhhc
Q 025749 109 GGSPPATLAEITLG--QQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAF 186 (248)
Q Consensus 109 ~g~ppaTlaEftl~--~~~d~YDVSlVdG~NlP~~i~P~~~~~~C~~~~C~~dl~~~CP~~l~v~~~g~~v~C~SaC~~~ 186 (248)
++.||+|||||+|+ +++|||||||||||||||+|.|+++.+.|+.++|.+|||..||.||+++.+|+||||+|||.+|
T Consensus 80 gg~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C~~~~C~~d~~~~CP~~L~v~~~g~vv~C~SaC~~f 159 (218)
T smart00205 80 GGRPPATLAEFALNQFGGLDFYDVSLVDGFNIPMSFTPTGGSGDCKGAGCTADLNAQCPAELQVPGGGSVVACNSACTVF 159 (218)
T ss_pred CCCCCcceeEEEecCCCCcceeeeEeeccccCCEEEEecCCCCCcCCCcCCCcccccCCHHHccccCCcccccccHhhcc
Confidence 88999999999993 6789999999999999999999876667999999999999999999998778999999999999
Q ss_pred CCCCcccCCCCCCCCCCCCchhhHHHHhhCCCcccCCCCCCCCceeecCC-CeEEEecC
Q 025749 187 NSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTFCP 244 (248)
Q Consensus 187 ~~d~~CC~g~~~~~~~C~pt~ys~~fK~~CP~AYsya~Dd~tstftC~~~-~y~vtFCP 244 (248)
++|||||+|+|++|++|+|+.||++||++||+||+||+||.+++|+|+++ +|+|+|||
T Consensus 160 ~~~~yCC~g~~~~~~~C~pt~ys~~FK~~CP~Aysya~Dd~~st~tC~~~~~y~V~FCp 218 (218)
T smart00205 160 GTDQYCCTGGQNNPETCPPTNYSRIFKNACPDAYSYAYDDPTSTFTCTGGTNYKVTFCP 218 (218)
T ss_pred CCCcceecCCCCCCCCCCCcchhhHHhhhCCccccCccCCCCcceEccCCCCEEEEeCC
Confidence 99999999999999999999999999999999999999999999999984 99999998
No 3
>cd09219 TLP-F thaumatin-like proteins: basidiomycete homologs. This subfamily is represented by Lentinula edodes TLG1, a thaumatin-like protein (TLP), as well as, other basidiomycete homologs. In general, TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. TLG1 TLP is involved in lentinan degradation and fruiting body senescence. TLG1 expressed in Escherichia coli and Aspergillus oryzae exhibited beta-1,3-glucanase activity and demonstrated lentinan degrading activity. TLG1 is proposed to be involved in lentinan and cell wall degradation during senescence following harvest and spore diffusion. TLPs are three-domain, crescent-fold structures with either an electronegative, electropositive, or neutral cleft occurring between domains I and II. TLG1 from Lentinula edodes contains the required acidic amino acids conserved in the appropriate positions to possess an electronegative cleft. TLPs within this subfamily contain 13 conserve
Probab=100.00 E-value=1.3e-82 Score=561.20 Aligned_cols=211 Identities=38% Similarity=0.794 Sum_probs=197.7
Q ss_pred EEEEeCCCCcccceeecCCCCc---cccCCceeeCCCCeeEEecCCCCc-eeEEeeeccccC-CCCCcccccCCCCCccc
Q 025749 30 ITLFNKCEHPVWPGIQASAGKP---LLARGGFKLPPNKAYTIRLPPLWS-GRFWGRHGCRFD-ASGRGRCATGDCGGSLF 104 (248)
Q Consensus 30 ~ti~N~C~~tVw~~~~~~~g~~---~~~~~g~~L~~G~s~s~~vp~~Ws-GriWaRtgCs~d-~~g~~~C~TGdCgg~l~ 104 (248)
|||+|||+||||||+++++|++ ++..+||+|+||++++|.+|++|+ |||||||||+|| ..|+++|+||||+|.|+
T Consensus 1 fti~N~C~~TVWPgi~~~~g~~~~~~~~~gGf~L~pg~s~~i~vp~~w~~GRiWgRTgC~~d~~~G~~~C~TGdCgg~l~ 80 (229)
T cd09219 1 FTVKNSCSSTIWPAMFTGGNFIDAVPDQATGWEAAAGGQVEFTVPDNWTAGRIWARTGCDFSDNPGPFSCLTGGCGGGLT 80 (229)
T ss_pred CEEEeCCCCCccceecCCCCCccccccCCCCEecCCCCeEEEECCCCCcccceeccCCCCCCCCCCCCCcccCCCCceee
Confidence 7999999999999999999987 677899999999999999999997 999999999999 46899999999999999
Q ss_pred ccCCCCCCCcceeEEeec-CCCceeeeccccCccccceeccCCCCCCCCCCCccccccccCCcCccccc--CCeeeeccc
Q 025749 105 CNGIGGSPPATLAEITLG-QQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRS--NSRVVACKS 181 (248)
Q Consensus 105 C~g~~g~ppaTlaEftl~-~~~d~YDVSlVdG~NlP~~i~P~~~~~~C~~~~C~~dl~~~CP~~l~v~~--~g~~v~C~S 181 (248)
|+ .++.||+|||||+|+ .++|||||||||||||||+|.|.. .|+.++|.+|||..||.||+++. +|++|||||
T Consensus 81 C~-~~g~pP~TlaEftL~~~~~D~YdVSlVDGfNlP~~i~P~~---~C~~~~C~~dln~~CP~~L~v~~~~~g~~vaC~S 156 (229)
T cd09219 81 CE-NSDQPPASLAEFTLIGGKEDNYDISLVDGFNIPLNITNNI---TCPQPQCQVDLNVLCPALLRGPLDQKGVNLGCIS 156 (229)
T ss_pred cC-CCCCCCcceeeEEecCCCCceeEEEEecccccceEeccCC---CCCCCcccCCCcccCCHHHccccCCCCccceecC
Confidence 99 478899999999995 578999999999999999999932 69999999999999999999973 788999999
Q ss_pred hhhh-cCC--CCcccCCCCCCCCCCCC--chhhHHHHhhCCCcccCCCCCCC--CceeecC---CCeEEEecC
Q 025749 182 ACFA-FNS--PRYCCTGSFGNPQSCKP--TAYSRIFKAACPRAYSYAYDDPT--SIATCTG---SNYLLTFCP 244 (248)
Q Consensus 182 aC~~-~~~--d~~CC~g~~~~~~~C~p--t~ys~~fK~~CP~AYsya~Dd~t--stftC~~---~~y~vtFCP 244 (248)
||.+ |++ |||||+|+|++|++|+| +.||++||++||+||||||||.+ |+|+|++ .+|+|||||
T Consensus 157 aC~a~~~~~~~~yCC~g~~~~p~~C~p~~t~ys~~FK~~CP~AYSYa~Dd~ssts~ftC~~~~~~~Y~ItFCP 229 (229)
T cd09219 157 PCNRDKNHDDSPSCCTGSHNKPETCPQSGVGNYAYFKDNCPTAYAYAYDEKSHTALWTCGDSKSADYTVTFCP 229 (229)
T ss_pred HhhhhccCCCCcccccCCCCCcCCCCCCcccHhHHHHhhCcccccccccCccccccEEeCCCCCCCEEEEeCC
Confidence 9999 655 99999999999999999 88999999999999999999999 6799997 599999998
No 4
>PF00314 Thaumatin: Thaumatin family; InterPro: IPR001938 Thaumatin [] is an intensely sweet-tasting protein, 100 000 times sweeter than sucrose on a molar basis [] found in berries from Thaumatococcus daniellii, a tropical flowering plant known as Katemfe, it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein. Thaumatin consists of about 200 residues and contains 8 disulphide bonds. Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix []. Several stress-induced proteins of plants have been found to be related to thaumatins: A maize alpha-amylase/trypsin inhibitor Two tobacco pathogenesis-related proteins: PR-R major and minor forms,which are induced after infection with viruses Salt-induced protein NP24 from tomato Osmotin, a salt-induced protein from tobacco[] Osmotin-like proteins OSML13, OSML15 and OSML81 from potato [] P21, a leaf protein from soybean PWIR2, a leaf protein from wheat [] Zeamatin, a maize antifunal protein [] This protein is also referred to as pathogenesis-related group 5 (PR5), as many thaumatin-like proteins accumulate in plants in response to infection by a pathogen and possess antifungal activity []. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown [].; PDB: 3G7M_A 2I0W_A 1AUN_A 1Z3Q_A 1KWN_A 2OQN_A 1THW_A 1LY0_A 2D8O_A 1LR3_A ....
Probab=100.00 E-value=5.4e-80 Score=541.83 Aligned_cols=210 Identities=59% Similarity=1.196 Sum_probs=176.8
Q ss_pred eCCCCcccceeecCCCCccccCCceeeCCCCeeEEecCCCCceeEEeeeccccCCCCCcccccCCCCCcccccCCCCCCC
Q 025749 34 NKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPP 113 (248)
Q Consensus 34 N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~WsGriWaRtgCs~d~~g~~~C~TGdCgg~l~C~g~~g~pp 113 (248)
|||+|||||++++++|++.+..+|++|+||+++++.+|++|+|||||||||++++.|+++|+||||+|+++|++.+++||
T Consensus 1 N~C~~tvWp~~~~~~~~~~~~~~g~~l~~g~s~~~~~p~~WsGriW~RTgC~~~~~g~~~C~TGdCgg~~~C~~~~~~~P 80 (213)
T PF00314_consen 1 NNCPFTVWPAILPNAGSPPLSTGGFRLDPGQSWSLTVPAGWSGRIWARTGCSFDGGGRGSCATGDCGGRLECNGAGGSPP 80 (213)
T ss_dssp E-SSS-EEEEEETTTSSSEEEEEEEEE-TTEEEEEE--TTESEEEEEEEEEEEETTSBEEEEES-STTBSSSSS----SS
T ss_pred CcCCCCeeeeecCCCCCCcCCCCCEEcCCCCeEEEecCccccceeeecCCCcCCCCCCcccccCCCCcccccccccCccc
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999998788999
Q ss_pred cceeEEee-c-CCCceeeeccccCccccceeccCCCCCCCCCCCccccccccCCcCcccccCCeeeeccchhhhcCCCCc
Q 025749 114 ATLAEITL-G-QQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRY 191 (248)
Q Consensus 114 aTlaEftl-~-~~~d~YDVSlVdG~NlP~~i~P~~~~~~C~~~~C~~dl~~~CP~~l~v~~~g~~v~C~SaC~~~~~d~~ 191 (248)
+|||||+| + +++|||||||||||||||+|+|++ ...|+..+|.+||+..||.||+++..+++++|+|+|.+|++|+|
T Consensus 81 ~TlaEftl~~~~~~d~YDVSlVdGfNlP~~i~p~~-~~~C~~~~C~~di~~~CP~~l~v~~~~~vv~C~SaC~~~~~~~~ 159 (213)
T PF00314_consen 81 ATLAEFTLNGSNGQDFYDVSLVDGFNLPMSISPSG-GSNCRSPGCPADINSWCPSELQVKNSDGVVGCKSACDAFNTDEY 159 (213)
T ss_dssp --EEEEEEEETTTEEEEEEESTT-BSS-EEEEESS-SSSSSSEEE-S-HHHHE-CCCEEETTSSTTEE--HHHHH-SHHH
T ss_pred ceeEEEEeccCCCcceEEEEeeeeecCChhhccCC-CCccccccCccccccccchhheeeccCceeeecccceeccCCcc
Confidence 99999999 4 889999999999999999999995 56999999999999999999999875559999999999999999
Q ss_pred ccCCCCCCCCCCCCchhhHHHHhhCCCcccCCCCCCCCceeecCC-CeEEEecC
Q 025749 192 CCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTFCP 244 (248)
Q Consensus 192 CC~g~~~~~~~C~pt~ys~~fK~~CP~AYsya~Dd~tstftC~~~-~y~vtFCP 244 (248)
||+|+|..|++|+++.|+++||++||+||+|||||++|+|+|+++ +|+|||||
T Consensus 160 CC~g~~~~~~~C~~~~ys~~fK~~CP~AYsya~DD~~s~ftC~~~~~y~ItFCP 213 (213)
T PF00314_consen 160 CCRGAYNTPDTCPPTNYSQFFKKACPDAYSYAYDDQTSTFTCPAGTNYTITFCP 213 (213)
T ss_dssp HTTCCS-TTSCS---HHHHHHHHH-TTSBSSTTSHTTT-EEEETT-EEEEEEST
T ss_pred ccccccCCCcccccchhhhhhhhhCcccccccccCCCcceECCCCCCEEEEeCc
Confidence 999999999999999999999999999999999999999999985 99999999
No 5
>cd09215 Thaumatin-like the sweet-tasting protein, thaumatin, and thaumatin-like proteins involved in host defense. This family is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii and thaumatin-like proteins (TLPs) involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs included in this family are such proteins as zeamatin, found in high concentrations in cereal seeds; osmotin, a salt-induced protein in osmotically stressed plants; and PpAZ44, a propylene-induced TLP in abscission of young fruit. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun
Probab=100.00 E-value=1.1e-59 Score=395.23 Aligned_cols=153 Identities=50% Similarity=1.026 Sum_probs=139.9
Q ss_pred EEEEeCCCCcccceeecCCCCccccCCceeeCCCCeeEEecCCCCceeEEeeeccccCC-CCCcccccCCCCCcccccCC
Q 025749 30 ITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWSGRFWGRHGCRFDA-SGRGRCATGDCGGSLFCNGI 108 (248)
Q Consensus 30 ~ti~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~WsGriWaRtgCs~d~-~g~~~C~TGdCgg~l~C~g~ 108 (248)
|||+|||+||||||+++++|++ +..+||+|+||+++++.+|+.|+|||||||+|+||+ .|++.|+||||+|+++|++
T Consensus 1 ~ti~N~C~~tVWPg~~~~~g~~-~~~gGf~L~~g~s~~~~~p~~wsGriWgRTgC~~~~~~g~~~C~TGdCgg~l~C~g- 78 (157)
T cd09215 1 FTITNRCPYTIWPAIFTQVGKG-PYTGGFELNPGETKSFDVSAGWQGRIWARTNCSFNANSGGNACLTGDCNGGLNCQG- 78 (157)
T ss_pred CEEEcCCCCCeeceecCCCCCC-CCCCCEecCCCCeeEEecCCCCeEeeecccccccCCCCCCCCcccCCCCceeecCC-
Confidence 7999999999999999999997 778999999999999999999999999999999998 7999999999999999998
Q ss_pred CCCCCcceeEEeec--CCCceeeeccccCccccceeccCCCCCCCCCCCccccccccCCcCcccccCCeeeeccchhhhc
Q 025749 109 GGSPPATLAEITLG--QQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAF 186 (248)
Q Consensus 109 ~g~ppaTlaEftl~--~~~d~YDVSlVdG~NlP~~i~P~~~~~~C~~~~C~~dl~~~CP~~l~v~~~g~~v~C~SaC~~~ 186 (248)
.+.||+|||||+|+ +++|||||||||||||||+|+|+. +.|+..+|.+
T Consensus 79 ~g~pp~TlaEftl~~~~~~d~YdVSlVdG~NlP~~i~P~~--~~C~~~~C~~---------------------------- 128 (157)
T cd09215 79 TGGPPATLAEFTLSGGGGLDYYDISLVDGYNLPMSITPQP--GECPTPICAA---------------------------- 128 (157)
T ss_pred CCCCCcceEEEEecCCCCcceeEEEeeccccCCEEEecCC--CCCCCCcccc----------------------------
Confidence 67799999999993 678999999999999999999974 2454444421
Q ss_pred CCCCcccCCCCCCCCCCCCchhhHHHHhhCCCcccCCCCCCCCceeecCC-CeEEEec
Q 025749 187 NSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTFC 243 (248)
Q Consensus 187 ~~d~~CC~g~~~~~~~C~pt~ys~~fK~~CP~AYsya~Dd~tstftC~~~-~y~vtFC 243 (248)
||+||+|||||.+++|+|+++ +|+|+||
T Consensus 129 -----------------------------Cp~Aysya~Dd~~s~~tC~~~~~y~v~FC 157 (157)
T cd09215 129 -----------------------------CPDAYSYAYDDQTSTFTCPGGAGYEVVFC 157 (157)
T ss_pred -----------------------------CccccccCCCCCccceECCCCCCEEEEeC
Confidence 999999999999999999984 9999999
No 6
>cd09217 TLP-P thaumatin and allergenic/antifungal thaumatin-like proteins: plant homologs. This subfamily is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii, allergenic/antifungal Thaumatin-like proteins (TLPs), and related plant proteins. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs in this subfamily include such proteins as zeamatin, found in high concentrations in cereal seeds, and osmotin, a salt-induced protein in osmotically stressed plants. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3
Probab=100.00 E-value=3.2e-52 Score=348.45 Aligned_cols=148 Identities=53% Similarity=1.079 Sum_probs=132.0
Q ss_pred EEEEeCCCCcccceeecCCCCccccCCceeeCCCCeeEEecCCC-CceeEEeeeccccCCCCCcccccCCCCCcccccCC
Q 025749 30 ITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPL-WSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGI 108 (248)
Q Consensus 30 ~ti~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~-WsGriWaRtgCs~d~~g~~~C~TGdCgg~l~C~g~ 108 (248)
|+|+|||+||||||+++ ..+||+|+||+++++.+|++ |+|||||||+|+||++|+++|+||||+|+++|++
T Consensus 1 ~~~~N~C~~tvWp~~~~-------~~gG~~L~~g~~~~~~~p~~~w~griW~RTgC~~~~~g~~~C~TGdCgg~l~C~~- 72 (151)
T cd09217 1 FTITNNCGYTVWPAATP-------VGGGRQLNPGQSWTIDVPAGTAGGRIWGRTGCSFDASGRGSCQTGDCGGVLSCTG- 72 (151)
T ss_pred CEEEeCCCCcccceEec-------CCCCEeCCCCCeEEEEcCCCCceEEEeeecCCCcCCCCCCcccccCCCCeeecCC-
Confidence 78999999999999986 24799999999999999997 9999999999999999999999999999999984
Q ss_pred CCCCCcceeEEeec-CCCceeeeccccCccccceeccCCCCCCCCCCCccccccccCCcCcccccCCeeeeccchhhhcC
Q 025749 109 GGSPPATLAEITLG-QQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFN 187 (248)
Q Consensus 109 ~g~ppaTlaEftl~-~~~d~YDVSlVdG~NlP~~i~P~~~~~~C~~~~C~~dl~~~CP~~l~v~~~g~~v~C~SaC~~~~ 187 (248)
++.||+||+||+|+ +++||||||+||||||||+|+|++. .|+.++|..
T Consensus 73 ~g~pp~Tl~E~tl~~~~~d~YdISlVdG~NlP~~i~P~~~--~C~~~~C~~----------------------------- 121 (151)
T cd09217 73 SGKPPATLAEYTLNQSGQDFYDISLVDGFNVPMDFSPTGG--GCHAIPCAA----------------------------- 121 (151)
T ss_pred CCCCCceeEEEEecCCCCccEEEEeecccccceEEecCCC--CCCCCcCCC-----------------------------
Confidence 78899999999995 5789999999999999999999732 354333331
Q ss_pred CCCcccCCCCCCCCCCCCchhhHHHHhhCCCcccCCCCCCCCceeecCC-CeEEEecC
Q 025749 188 SPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTFCP 244 (248)
Q Consensus 188 ~d~~CC~g~~~~~~~C~pt~ys~~fK~~CP~AYsya~Dd~tstftC~~~-~y~vtFCP 244 (248)
. ||+||+|++|| .++|+|+.+ +|+|+|||
T Consensus 122 ------------------d---------C~~ay~~~~D~-~~~~~C~~~~~~~v~fCp 151 (151)
T cd09217 122 ------------------N---------CPDAYSYPKDP-TTTFTCPGGTNYRIVFCP 151 (151)
T ss_pred ------------------C---------CchHhcCCCCC-CceEeCCCCCCEEEEeCC
Confidence 1 99999999995 799999987 99999998
No 7
>cd08961 GH64-TLP-SF glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins. This superfamily includes glycoside hydrolases of family 64 (GH64), these are mostly bacterial beta-1,3-glucanases which cleave long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers and are implicated in fungal cell wall degradation. Also included in this superfamily are thaumatin, the sweet-tasting protein from the African berry Thaumatococcus daniellii, and thaumatin-like proteins (TLPs) which are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Like GH64s, some TLPs also hydrolyze the beta-1,3-glucans of the type commonly found in fungal walls. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. Several members of the plant TLP
Probab=100.00 E-value=5.1e-51 Score=341.76 Aligned_cols=150 Identities=43% Similarity=0.700 Sum_probs=134.7
Q ss_pred EEEEeCCCCcccceeecCCCCccccCCceeeCCCCeeEEecCCCCceeEEeeeccccCCCCCcccccCCCCCcccccCCC
Q 025749 30 ITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIG 109 (248)
Q Consensus 30 ~ti~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~WsGriWaRtgCs~d~~g~~~C~TGdCgg~l~C~g~~ 109 (248)
|+|+|||+|||||+++++++++.+..+|++|.||+++++++|+.|+||||+||||+++..|++.|+||||++ +.|.+.+
T Consensus 1 ~ti~NnC~~tVWp~i~~~~~~~~~~~gg~~L~pG~s~si~vP~~wsGRIW~RtgC~~~~~g~g~C~TGdcgg-~~c~g~~ 79 (153)
T cd08961 1 LTITNNCGYQVWIYNLGTELSSAPDASGPGLAPGRSTTIQIPKGFSGRIWFRTGCSMDFSGTTGCLTQDPGV-VNPTDPN 79 (153)
T ss_pred CEEEeCCCCcCcceECCCCCCCCccCcccccCCCCcEEEEecCCceEEEEEecCCcccCCCCccccccCCCC-cccCCCC
Confidence 789999999999999999888877789999999999999999999999999999999988999999999998 6888778
Q ss_pred CCCCcceeEEeec--CCCceeeeccccCccccceeccCCCCCCCCCCCccccccccCCcCcccccCCeeeeccchhhhcC
Q 025749 110 GSPPATLAEITLG--QQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFN 187 (248)
Q Consensus 110 g~ppaTlaEftl~--~~~d~YDVSlVdG~NlP~~i~P~~~~~~C~~~~C~~dl~~~CP~~l~v~~~g~~v~C~SaC~~~~ 187 (248)
+.||+||+||||+ +++|||||||||||||||+|+|..+.+.
T Consensus 80 g~pp~TlaEfTl~~~~~~dfydISlVDGfNlP~~i~p~~~~g~------------------------------------- 122 (153)
T cd08961 80 RDPPFTLAEFTLNDFNSGDFIDSSLVDGFNAPMTVGPRRGDGT------------------------------------- 122 (153)
T ss_pred CCCCcceEEEEecCCCCcceEEEEeecccCCCEEEEeccCCCC-------------------------------------
Confidence 8999999999994 6789999999999999999999743211
Q ss_pred CCCcccCCCCCCCCCCCCchhhHHHHhhCCCcccCCCCCCCCceeecCC-CeEEEe
Q 025749 188 SPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTF 242 (248)
Q Consensus 188 ~d~~CC~g~~~~~~~C~pt~ys~~fK~~CP~AYsya~Dd~tstftC~~~-~y~vtF 242 (248)
|++.. |||+|||||..++|+|+++ +|.|+|
T Consensus 123 ---------------C~~~~----------~~~~~~~~~~~~~~~c~~~~~~~~~~ 153 (153)
T cd08961 123 ---------------CLSTG----------DAYSYAFDDHESTFTCGGGRNYSLTF 153 (153)
T ss_pred ---------------ccccc----------cccccCCCCccceEEcCCCCceEEeC
Confidence 22211 8999999998899999987 999998
No 8
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=97.74 E-value=0.00041 Score=58.69 Aligned_cols=102 Identities=23% Similarity=0.230 Sum_probs=60.1
Q ss_pred EEEEEeCCCCcccceeecCCCCccccCCceeeCC--CCeeEEecC-CCCceeEEeeeccccCCCCCcccccCCCCCcccc
Q 025749 29 TITLFNKCEHPVWPGIQASAGKPLLARGGFKLPP--NKAYTIRLP-PLWSGRFWGRHGCRFDASGRGRCATGDCGGSLFC 105 (248)
Q Consensus 29 t~ti~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~--G~s~s~~vp-~~WsGriWaRtgCs~d~~g~~~C~TGdCgg~l~C 105 (248)
+-.|+|+|.|+|++=..+.... ....|.+ ++.++.... ..+.|.=---| ..|
T Consensus 12 ~AiV~N~C~~~VyLWSvg~~vs-----~~~~l~~~~~~~~~e~~r~~~gGGisLKIt--~~d------------------ 66 (155)
T PF04681_consen 12 NAIVVNNCDFPVYLWSVGSSVS-----PMQTLQGRSGSYYEEFYRDPSGGGISLKIT--TTD------------------ 66 (155)
T ss_pred ceEEEECCCCCEEEEEecCCcC-----cceEEcCCCCccEeEEccCCCCCcEEEEEe--cCC------------------
Confidence 3468999999999965554322 2356654 333332222 23333210001 001
Q ss_pred cCCCCCCCcceeEEee-c-CCCceeeeccccCcc---ccceeccCCCCCCCCCCCccc
Q 025749 106 NGIGGSPPATLAEITL-G-QQQDFYDVSLVDGYN---IAMSILPIRGSGKCSYAGCVS 158 (248)
Q Consensus 106 ~g~~g~ppaTlaEftl-~-~~~d~YDVSlVdG~N---lP~~i~P~~~~~~C~~~~C~~ 158 (248)
+.....|.|..||+| + +.+-|||+|.|.|.. -+|.|.|.+. .|.++.|..
T Consensus 67 -Gl~t~~pqt~FaYtL~~d~~~VwYDLSdvfGdPF~G~~v~v~ps~~--~Cp~I~Wp~ 121 (155)
T PF04681_consen 67 -GLYTGSPQTIFAYTLVDDNNQVWYDLSDVFGDPFAGHKVTVNPSDP--SCPSIVWPN 121 (155)
T ss_pred -CCcCCCceeEEEEEecCCCceEEEECccccCCCcCCCEEEEecCCC--CCCceECCC
Confidence 111124799999999 3 568999999999963 3477888754 787776654
No 9
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=95.74 E-value=0.032 Score=53.00 Aligned_cols=109 Identities=19% Similarity=0.268 Sum_probs=64.4
Q ss_pred EEEEEeCCCC--cccceeecCC---CC------------cccc----C--C--ceee-CCCCeeEEecCCCCceeEEeee
Q 025749 29 TITLFNKCEH--PVWPGIQASA---GK------------PLLA----R--G--GFKL-PPNKAYTIRLPPLWSGRFWGRH 82 (248)
Q Consensus 29 t~ti~N~C~~--tVw~~~~~~~---g~------------~~~~----~--~--g~~L-~~G~s~s~~vp~~WsGriWaRt 82 (248)
.|+|+||=+. +||..+++.. |+ +... + . ...| ++|++.++.+|. ++||||=..
T Consensus 2 pl~l~Nns~~~~~vy~yi~G~~~~~~~~v~~~adG~~~~p~~~~~~~~~~~d~aipl~~~G~~~tvtiP~-~sgRiyfS~ 80 (353)
T cd09216 2 PLTITNNSGRNNQIYLYVVGTDLQTGRQGWVDADGAAHPVPPGDNVPDGAADYAIPLPSPGDTTTVLPPR-MSGRIYFSL 80 (353)
T ss_pred cEEEEeCCCCCCcEEEEEEeeeCCCCcEEEEeCCCCEecCCcccCCCCCccceeeECCCCCCceEEcccc-cCcEEEEEc
Confidence 5889999987 8999987642 21 0000 0 0 1223 357888999998 999999754
Q ss_pred ccccCCCCCcccccCCCCCcccccC-CC-CCCC----cceeEEeecCCCceeeeccccCccccceeccC
Q 025749 83 GCRFDASGRGRCATGDCGGSLFCNG-IG-GSPP----ATLAEITLGQQQDFYDVSLVDGYNIAMSILPI 145 (248)
Q Consensus 83 gCs~d~~g~~~C~TGdCgg~l~C~g-~~-g~pp----aTlaEftl~~~~d~YDVSlVdG~NlP~~i~P~ 145 (248)
|=. =.|.-.. +..+.-.. .. ..|- -..+|||+.+..-|-++|.||-|.+||.|+=.
T Consensus 81 g~~----L~F~~~~---~~~lv~Ps~~NpsDpN~~~~~~f~EfT~n~~gl~~N~T~VD~~~~P~~l~l~ 142 (353)
T cd09216 81 GSK----LRFKVVT---NPALVQPAGWNPSDPNFNILHDWVEFTFNDAGLFCNTTQVDMFSAPLAIGLR 142 (353)
T ss_pred CCe----eEEEecC---CCcccCCCCCCCCCCCccceEEEEEEEecCCceEecccceeeeccceEEEEe
Confidence 311 1111111 11111110 00 1111 13479999645568999999999999999744
No 10
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=94.39 E-value=0.21 Score=47.79 Aligned_cols=111 Identities=19% Similarity=0.234 Sum_probs=65.0
Q ss_pred EEEEEeCCCC-cccceeecCC---CC------------cccc--------CC--ceeeC-CCCeeEEecCCCCceeEEee
Q 025749 29 TITLFNKCEH-PVWPGIQASA---GK------------PLLA--------RG--GFKLP-PNKAYTIRLPPLWSGRFWGR 81 (248)
Q Consensus 29 t~ti~N~C~~-tVw~~~~~~~---g~------------~~~~--------~~--g~~L~-~G~s~s~~vp~~WsGriWaR 81 (248)
.|+|+|+=+. +|+..|++.. ++ +... .. ..-|. +|++.++++|.-++||||=.
T Consensus 2 ~l~l~N~~~~~~vyaYitG~~~~~~~~~~l~adG~~~~~~~~~~~~~~~~~~d~aIpl~~~G~~~titiP~i~sgRIyfS 81 (369)
T cd09220 2 PLALVNNSGSGTVYAYITGLDLNNNRVVFLRADGSTYYPPSSPSAVPSPLGADCAIPLGAPGSTTTVTIPILAGGRIWFS 81 (369)
T ss_pred cEEEEecCCCCcEEEEEeceecCCCcEEEEeCCCcEeCCCCCccccCCCCCcceeeecCCCCCceeEEcccccceEEEEE
Confidence 5789999886 8998887641 21 0000 01 12332 47889999999999999975
Q ss_pred eccccCCCCCcccccCCCC-CcccccCCC-CCCC----cceeEEeecCCCceeeeccccCccccceeccC
Q 025749 82 HGCRFDASGRGRCATGDCG-GSLFCNGIG-GSPP----ATLAEITLGQQQDFYDVSLVDGYNIAMSILPI 145 (248)
Q Consensus 82 tgCs~d~~g~~~C~TGdCg-g~l~C~g~~-g~pp----aTlaEftl~~~~d~YDVSlVdG~NlP~~i~P~ 145 (248)
.+=. -.|- ...+ + +..+=.-.. ..|- -..+|||+.+.+-|=++|.||-|.+||.|+-.
T Consensus 82 ~g~~----L~F~-~~~~-g~glv~Ps~~NpsDpN~~~~~~f~EfT~n~~~l~~N~S~VD~~~~P~~l~l~ 145 (369)
T cd09220 82 VDDK----LTFL-LNPG-GPALVEPSVTNPSDPNYNKNWGFCEFTYNSGQLYANISYVDFVGLPLGLSLT 145 (369)
T ss_pred cCCe----EEEE-ecCC-CccccCCCcCCCCCCCccceEEEEEEEecCCceEecccceeeeccCeEEEEE
Confidence 4311 0111 1111 1 111110000 0111 13479999655678999999999999998743
No 11
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=69.94 E-value=3 Score=39.33 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=26.6
Q ss_pred eeEEeecCCCceeeeccccCccccceeccCC
Q 025749 116 LAEITLGQQQDFYDVSLVDGYNIAMSILPIR 146 (248)
Q Consensus 116 laEftl~~~~d~YDVSlVdG~NlP~~i~P~~ 146 (248)
.+|||+.+..-|-++|.||-|.+||.|+=.+
T Consensus 125 f~EFT~n~~~l~~N~T~VD~~~lPl~l~l~~ 155 (319)
T cd09214 125 FIEFTYNATGLWGNTTRVDAFGIPLTLRLIG 155 (319)
T ss_pred EEEEEecCCceEecccceeeeccCeEEEEEc
Confidence 4799997677899999999999999998553
No 12
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=68.16 E-value=9.3 Score=31.59 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=38.9
Q ss_pred cceEEEEEeCCCCcccceeecCCCCccccCCceeeCCCCeeEEecCCCCceeEEeee
Q 025749 26 KATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWSGRFWGRH 82 (248)
Q Consensus 26 ~~~t~ti~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~WsGriWaRt 82 (248)
....++|+|+.+.+|-+-+.-..|.+..- ..|+||++..++ .+.|..|--.
T Consensus 7 ~~~~v~F~N~t~~~v~~~Wid~~G~~~~Y---~~l~pg~~~~~~---Ty~~H~W~~r 57 (141)
T cd05468 7 VPSTVRFVNRTDRPVELYWIDYDGKPVSY---GTLQPGETVRQN---TYVGHPWLFR 57 (141)
T ss_pred ceEEEEEEeCCCCeEEEEEECCCCCEEEe---eeeCCCCEEeec---ccCCCcEEEE
Confidence 45789999999999999998877765432 479999987554 4667777544
No 13
>PF06282 DUF1036: Protein of unknown function (DUF1036); InterPro: IPR009380 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=63.62 E-value=12 Score=29.86 Aligned_cols=41 Identities=20% Similarity=0.373 Sum_probs=32.5
Q ss_pred eEEEEEeCCCCcccceeecCCCCccccCCceeeCCCCeeEE
Q 025749 28 TTITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTI 68 (248)
Q Consensus 28 ~t~ti~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~ 68 (248)
+-|+|-|+-++.|++++.-..+......|-+.|+||+-..+
T Consensus 4 a~~~vCN~T~~~v~vAigy~~~~~W~seGWw~i~pg~C~~v 44 (115)
T PF06282_consen 4 AGLRVCNRTSSPVGVAIGYRDGGGWVSEGWWRIDPGECATV 44 (115)
T ss_pred CCcEEecCCCCeEEEEEEEEcCCCcEEeeeEEeCCCceEEe
Confidence 56899999999999999654444444567789999998766
No 14
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=57.98 E-value=5.9 Score=37.33 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=19.7
Q ss_pred chhhHHHHhhCC--CcccCCCCCC
Q 025749 206 TAYSRIFKAACP--RAYSYAYDDP 227 (248)
Q Consensus 206 t~ys~~fK~~CP--~AYsya~Dd~ 227 (248)
+.|++++++.-. .||.|||||-
T Consensus 276 N~Yar~vH~~~idg~aYaF~YDDV 299 (319)
T cd09214 276 NYYAQFWHAHSINGLAYGFPYDDV 299 (319)
T ss_pred hHHHHHHHHhccCCCeeecccccc
Confidence 469999999997 7999999995
No 15
>PF01847 VHL: von Hippel-Lindau disease tumour suppressor protein; InterPro: IPR022772 Von Hippel-Lindau disease tumor suppressor (VHL) has two domains: a roughly 100-residue N-terminal domain rich in beta sheet (beta domain) and a smaller alpha-helical domain (alpha domain), held together by two linkers and a polar interface. A large portion of the alpha domain surface, and a small portion of the beta domain, interact with ElonginC. About half of the tumorigenic mutations map to the alpha domain and its residues that contact ElonginC. The remaining mutations map to the beta domain, and significantly, to a beta domain surface patch uninvolved in ElonginC binding. This suggests that two intact macromolecular binding sites may be required for the tumor suppressor effects of VHL []. This entry represents both beta and alpha domains of VHL.; PDB: 3ZRF_L 3ZRC_C 1LM8_V 1LQB_C 1VCB_F.
Probab=55.51 E-value=13 Score=31.64 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=31.3
Q ss_pred ccceEEEEEeCCCCcccceeecCCCCccccCCceeeCCCCeeEEecCCCCceeEEe
Q 025749 25 IKATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWSGRFWG 80 (248)
Q Consensus 25 a~~~t~ti~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~vp~~WsGriWa 80 (248)
-....++|+|+++.+|-+-+..-.|.+..- ..|+||+...++ .+.|..|=
T Consensus 12 ~~~s~V~F~N~s~r~V~v~Wldy~G~~~~Y---~~L~Pg~~~~~~---TY~tHpW~ 61 (156)
T PF01847_consen 12 REPSFVRFVNRSPRTVDVYWLDYDGKPVPY---GTLKPGQGRRQN---TYVTHPWV 61 (156)
T ss_dssp -SEEEEEEEE-SSS-EEEEEE-TTS-EEE------B-TTEEEEEE---EETT-EEE
T ss_pred CCceEEEEEECCCCEEEEEEEcCCCcEeec---cccCCCCeEEcc---cccCCcEE
Confidence 345789999999999999988877776543 369999988876 34566664
No 16
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=53.53 E-value=7.8 Score=37.31 Aligned_cols=22 Identities=45% Similarity=0.901 Sum_probs=19.8
Q ss_pred chhhHHHHhhCC--CcccCCCCCC
Q 025749 206 TAYSRIFKAACP--RAYSYAYDDP 227 (248)
Q Consensus 206 t~ys~~fK~~CP--~AYsya~Dd~ 227 (248)
+.|++++++.-+ .+|.|||||-
T Consensus 321 NhYar~vH~~~~dg~gYaFpYDDV 344 (369)
T cd09220 321 NHYSRIVHENNPDGRGYAFPYDDV 344 (369)
T ss_pred hHHHHHHHHhccCCCeeccccccc
Confidence 569999999998 7899999996
No 17
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=50.49 E-value=13 Score=28.91 Aligned_cols=19 Identities=32% Similarity=0.593 Sum_probs=8.3
Q ss_pred HHHHHHHHHhhccccceEE
Q 025749 12 ALLLTTIVLFSHNIKATTI 30 (248)
Q Consensus 12 ~l~~~~~~~~~~~a~~~t~ 30 (248)
.|+||+++++++.+.++..
T Consensus 10 ~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 10 GLLLAALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHHHHHHhhhhhHHh
Confidence 3444444444444444444
No 18
>PHA03094 dUTPase; Provisional
Probab=49.29 E-value=22 Score=29.49 Aligned_cols=32 Identities=22% Similarity=0.482 Sum_probs=25.7
Q ss_pred cCCceeeCCCCeeE------EecCCCCceeEEeeeccc
Q 025749 54 ARGGFKLPPNKAYT------IRLPPLWSGRFWGRHGCR 85 (248)
Q Consensus 54 ~~~g~~L~~G~s~s------~~vp~~WsGriWaRtgCs 85 (248)
....+.|.||+... +.+|.+|.|.|++|.+-.
T Consensus 32 a~~~~~i~P~~~~lv~Tg~~i~ip~g~~g~i~~RSsla 69 (144)
T PHA03094 32 SAYDYTVPPKERILVKTDISLSIPKFCYGRIAPRSGLS 69 (144)
T ss_pred cCCCeEECCCCEEEEEcCeEEEcCCCEEEEEEcccccc
Confidence 34457899999877 789999999999997543
No 19
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=46.80 E-value=11 Score=36.00 Aligned_cols=22 Identities=32% Similarity=0.763 Sum_probs=19.3
Q ss_pred chhhHHHHhhCC--CcccCCCCCC
Q 025749 206 TAYSRIFKAACP--RAYSYAYDDP 227 (248)
Q Consensus 206 t~ys~~fK~~CP--~AYsya~Dd~ 227 (248)
+.|++++++.=. .||.|||||-
T Consensus 310 NhYar~vH~~~~dgk~YaF~YDDV 333 (353)
T cd09216 310 NHYAKVVHEAMADGKAYGFAFDDV 333 (353)
T ss_pred hHHHHHHHHhccCCCeeecCcccc
Confidence 469999999987 6899999995
No 20
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=44.12 E-value=73 Score=28.28 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=26.9
Q ss_pred cccceEEEEEeCCCCcccceeec--CCCC---cc-ccCCceeeCCCCeeEEec
Q 025749 24 NIKATTITLFNKCEHPVWPGIQA--SAGK---PL-LARGGFKLPPNKAYTIRL 70 (248)
Q Consensus 24 ~a~~~t~ti~N~C~~tVw~~~~~--~~g~---~~-~~~~g~~L~~G~s~s~~v 70 (248)
.....+|+|.|+=..++-+-..- .... +. ..+--++|+||++..+.+
T Consensus 38 ~~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl~pg~~q~vRi 90 (230)
T PRK09918 38 SDGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARVEPGQSQQVRF 90 (230)
T ss_pred CCCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEECCCCceEEEE
Confidence 34567899999887653332211 1111 11 113358999999887754
No 21
>PRK02710 plastocyanin; Provisional
Probab=42.89 E-value=1.1e+02 Score=24.24 Aligned_cols=16 Identities=0% Similarity=-0.066 Sum_probs=10.9
Q ss_pred CCceeeCCCCeeEEec
Q 025749 55 RGGFKLPPNKAYTIRL 70 (248)
Q Consensus 55 ~~g~~L~~G~s~s~~v 70 (248)
+.-..+++|++.++..
T Consensus 46 P~~i~v~~Gd~V~~~N 61 (119)
T PRK02710 46 PSTLTIKAGDTVKWVN 61 (119)
T ss_pred CCEEEEcCCCEEEEEE
Confidence 3457888888776653
No 22
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=40.55 E-value=94 Score=27.84 Aligned_cols=47 Identities=21% Similarity=0.295 Sum_probs=26.5
Q ss_pred cccceEEEEEeCCCCcccce--eecC-CCC--ccc--cCCceeeCCCCeeEEec
Q 025749 24 NIKATTITLFNKCEHPVWPG--IQAS-AGK--PLL--ARGGFKLPPNKAYTIRL 70 (248)
Q Consensus 24 ~a~~~t~ti~N~C~~tVw~~--~~~~-~g~--~~~--~~~g~~L~~G~s~s~~v 70 (248)
+....+|+|.|+=....|.. +... .+. +++ .+--|+|+||+..++.+
T Consensus 41 ~~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl~~~~~~~lRI 94 (228)
T PRK15188 41 GSKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRI 94 (228)
T ss_pred CCceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEECCCCceEEEE
Confidence 44567899999986543331 1111 111 111 13358999998887763
No 23
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=37.62 E-value=75 Score=26.39 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=21.2
Q ss_pred eeeCCCCeeEEecCCCCceeEEeeeccc
Q 025749 58 FKLPPNKAYTIRLPPLWSGRFWGRHGCR 85 (248)
Q Consensus 58 ~~L~~G~s~s~~vp~~WsGriWaRtgCs 85 (248)
..|+||++.++.++..-.|++| -.|+
T Consensus 94 ~~I~pGet~TitF~adKpG~Y~--y~C~ 119 (135)
T TIGR03096 94 EVIKAGETKTISFKADKAGAFT--IWCQ 119 (135)
T ss_pred eEECCCCeEEEEEECCCCEEEE--EeCC
Confidence 5699999999999888889987 3454
No 24
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=34.92 E-value=1.4e+02 Score=26.63 Aligned_cols=47 Identities=26% Similarity=0.415 Sum_probs=28.6
Q ss_pred cccceEEEEEeCCCCcccceeecCCC-C------cc-ccCCceeeCCCCeeEEec
Q 025749 24 NIKATTITLFNKCEHPVWPGIQASAG-K------PL-LARGGFKLPPNKAYTIRL 70 (248)
Q Consensus 24 ~a~~~t~ti~N~C~~tVw~~~~~~~g-~------~~-~~~~g~~L~~G~s~s~~v 70 (248)
...+..|+|.|+=.+++-+-+.-..| . |. ..+--|+|+||+..++.+
T Consensus 41 ~~k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl~p~~~q~vRi 95 (235)
T COG3121 41 GDKETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRLEPGQEQQLRI 95 (235)
T ss_pred CCceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEECCCCccEEEE
Confidence 34567889999877776665433222 1 10 012358999998777754
No 25
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=32.96 E-value=45 Score=25.95 Aligned_cols=19 Identities=37% Similarity=0.289 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q 025749 4 TMLLRSLLALLLTTIVLFS 22 (248)
Q Consensus 4 ~~~~~~~~~l~~~~~~~~~ 22 (248)
.+||.++++++|+|+|.-+
T Consensus 6 ~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEVA 24 (95)
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3455566667777666433
No 26
>PF15240 Pro-rich: Proline-rich
Probab=30.37 E-value=30 Score=30.09 Aligned_cols=11 Identities=45% Similarity=0.404 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 025749 6 LLRSLLALLLT 16 (248)
Q Consensus 6 ~~~~~~~l~~~ 16 (248)
||+.|.+.|||
T Consensus 2 LlVLLSvALLA 12 (179)
T PF15240_consen 2 LLVLLSVALLA 12 (179)
T ss_pred hhHHHHHHHHH
Confidence 33333333344
No 27
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=29.22 E-value=62 Score=23.07 Aligned_cols=23 Identities=35% Similarity=0.681 Sum_probs=17.5
Q ss_pred eeeCCCCeeEEecCCCC-----ceeEEe
Q 025749 58 FKLPPNKAYTIRLPPLW-----SGRFWG 80 (248)
Q Consensus 58 ~~L~~G~s~s~~vp~~W-----sGriWa 80 (248)
|+|.||+..++...... +|++|-
T Consensus 2 ~~L~~g~~~~lr~~~~~~l~v~~G~vWl 29 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQRLRVESGRVWL 29 (63)
T ss_pred EEeCCCceEEeEcCCCcEEEEccccEEE
Confidence 67888888888876643 588885
No 28
>PF02495 7kD_coat: 7kD viral coat protein; InterPro: IPR003411 This family consists of a 7 kDa coat protein from Carlavirus and Potexvirus [].
Probab=28.89 E-value=98 Score=21.63 Aligned_cols=14 Identities=29% Similarity=0.646 Sum_probs=10.3
Q ss_pred ccceEEEEEeCCCCc
Q 025749 25 IKATTITLFNKCEHP 39 (248)
Q Consensus 25 a~~~t~ti~N~C~~t 39 (248)
..+..++|.| |.++
T Consensus 31 ItGeSv~I~g-C~~~ 44 (59)
T PF02495_consen 31 ITGESVTISG-CEFT 44 (59)
T ss_pred EeCcEEEEEC-CCCC
Confidence 4567888888 8765
No 29
>PF01356 A_amylase_inhib: Alpha amylase inhibitor; InterPro: IPR000833 Alpha-amylase inhibitor inhibits mammalian alpha-amylases specifically, by forming a tight stoichiometric 1:1 complex with alpha-amylase. The inhibitor has no action on plant and microbial alpha amylases. A crystal structure has been determined for tendamistat, the 74-amino acid inhibitor produced by Streptomyces tendae that targets a wide range of mammalian alpha-amylases []. The binding of tendamistat to alpha-amylase leads to the steric blockage of the active site of the enzyme. The crystal structure of tendamistat revealed an immunoglobulin-like fold that could potentially adopt multiple conformations. Such molecular flexibility could enable an induced-fit type of binding that would both optimise binding and allow broad target specificity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0015066 alpha-amylase inhibitor activity; PDB: 2KER_A 3AIT_A 1BVN_T 1HOE_A 4AIT_A 2AIT_A 1OK0_A.
Probab=28.39 E-value=76 Score=23.34 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=23.3
Q ss_pred EEEEeCCCCcccceeecCCCCccccCCceeeCCCCeeEEe
Q 025749 30 ITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIR 69 (248)
Q Consensus 30 ~ti~N~C~~tVw~~~~~~~g~~~~~~~g~~L~~G~s~s~~ 69 (248)
-.+.|+|+.+|-+.+.=..|...+ -..++||+-.+|.
T Consensus 17 T~v~N~Ca~tvsVtV~Y~dG~~~P---Crv~~PG~~~Tf~ 53 (68)
T PF01356_consen 17 TDVTNGCADTVSVTVEYTDGQEVP---CRVIPPGDIATFP 53 (68)
T ss_dssp EEEEE-SSS-EEEEEEETTS-CEE---EEEE-TTEEEEEE
T ss_pred EEeeCCCcccEEEEEEEeCCCcce---eEEeCCCCEEEec
Confidence 358999999998888655554322 3688899877664
No 30
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=27.93 E-value=93 Score=24.56 Aligned_cols=54 Identities=17% Similarity=0.316 Sum_probs=34.0
Q ss_pred ceEEEEEeCCCCcccceeecCCCCcc-----c-cCCceeeCCCCeeEEecCCCC-ceeEEe
Q 025749 27 ATTITLFNKCEHPVWPGIQASAGKPL-----L-ARGGFKLPPNKAYTIRLPPLW-SGRFWG 80 (248)
Q Consensus 27 ~~t~ti~N~C~~tVw~~~~~~~g~~~-----~-~~~g~~L~~G~s~s~~vp~~W-sGriWa 80 (248)
...|+|+|+=+.++-+-+.+-...+. . ......+.||+++++.++..- .|.+|=
T Consensus 35 ~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wY 95 (117)
T PF07732_consen 35 TVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWY 95 (117)
T ss_dssp EEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEE
T ss_pred eeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeE
Confidence 46899999998876555443211111 0 112357899999888876655 788884
No 31
>PLN02547 dUTP pyrophosphatase
Probab=27.55 E-value=83 Score=26.49 Aligned_cols=30 Identities=20% Similarity=0.152 Sum_probs=23.0
Q ss_pred CCceeeCCCCee------EEecCCCCceeEEeeecc
Q 025749 55 RGGFKLPPNKAY------TIRLPPLWSGRFWGRHGC 84 (248)
Q Consensus 55 ~~g~~L~~G~s~------s~~vp~~WsGriWaRtgC 84 (248)
...+.|.|++.. .+.+|.+|.|+|++|.+=
T Consensus 44 ~~d~~i~P~~~~li~tgi~v~iP~g~~g~i~~RSgl 79 (157)
T PLN02547 44 AYDTVVPARGKALVPTDLSIAIPEGTYARIAPRSGL 79 (157)
T ss_pred CCCeEECCCCEEEEEeceEEEcCCCeEEEEEccccc
Confidence 345778888865 456889999999999753
No 32
>PHA02703 ORF007 dUTPase; Provisional
Probab=26.98 E-value=83 Score=26.77 Aligned_cols=38 Identities=29% Similarity=0.315 Sum_probs=26.7
Q ss_pred CCCccccCCceeeCCCCee------EEecCCCCceeEEeeeccc
Q 025749 48 AGKPLLARGGFKLPPNKAY------TIRLPPLWSGRFWGRHGCR 85 (248)
Q Consensus 48 ~g~~~~~~~g~~L~~G~s~------s~~vp~~WsGriWaRtgCs 85 (248)
+|-.......+.|+||+.. .+.+|.+|.|.|++|.+-.
T Consensus 34 AGyDL~a~~d~vi~P~~~~lv~TGi~i~iP~g~~g~i~~RSsla 77 (165)
T PHA02703 34 AGLDLCSACDCIVPAGCRCVVFTDLLIKLPDGCYGRIAPRSGLA 77 (165)
T ss_pred cCccEecCCCeEECCCCEEEEeCCeEEEcCCCeEEEEECCccch
Confidence 4433333445789999873 5568999999999997543
No 33
>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.
Probab=26.59 E-value=25 Score=28.99 Aligned_cols=17 Identities=53% Similarity=1.187 Sum_probs=13.3
Q ss_pred CCcccccCCCCCccccc
Q 025749 90 GRGRCATGDCGGSLFCN 106 (248)
Q Consensus 90 g~~~C~TGdCgg~l~C~ 106 (248)
|.+.|+-|||||.|.|.
T Consensus 83 g~Gp~~PGdCGg~L~C~ 99 (127)
T PF00947_consen 83 GEGPAEPGDCGGILRCK 99 (127)
T ss_dssp EE-SSSTT-TCSEEEET
T ss_pred ecccCCCCCCCceeEeC
Confidence 45789999999999997
No 34
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=25.71 E-value=23 Score=29.87 Aligned_cols=10 Identities=50% Similarity=1.059 Sum_probs=8.1
Q ss_pred cccCccccce
Q 025749 132 LVDGYNIAMS 141 (248)
Q Consensus 132 lVdG~NlP~~ 141 (248)
+||||||=-.
T Consensus 2 lIDGYNli~~ 11 (166)
T PF05991_consen 2 LIDGYNLIHA 11 (166)
T ss_pred eEcchhhhCC
Confidence 6899998655
No 35
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=24.08 E-value=2.3e+02 Score=22.54 Aligned_cols=58 Identities=21% Similarity=0.333 Sum_probs=39.4
Q ss_pred ccccceEEEEEeCCCCcccceeec-----CC----------CC--ccccCCceeeCCCCeeEEecCC-CCceeEEe
Q 025749 23 HNIKATTITLFNKCEHPVWPGIQA-----SA----------GK--PLLARGGFKLPPNKAYTIRLPP-LWSGRFWG 80 (248)
Q Consensus 23 ~~a~~~t~ti~N~C~~tVw~~~~~-----~~----------g~--~~~~~~g~~L~~G~s~s~~vp~-~WsGriWa 80 (248)
++-...+++|+|...-+|++|..- |. |. .-+.++....+||+++++++-+ +=..+|+|
T Consensus 17 ~gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~~G~r~v~G 92 (101)
T cd00407 17 AGREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELVPIGGKRRVYG 92 (101)
T ss_pred CCCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEEEccCceEEEc
Confidence 456679999999999999999741 11 11 1124566788999999998533 33445655
No 36
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=23.70 E-value=1.4e+02 Score=21.31 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=11.4
Q ss_pred cccceEEEEEeCCCCcccc
Q 025749 24 NIKATTITLFNKCEHPVWP 42 (248)
Q Consensus 24 ~a~~~t~ti~N~C~~tVw~ 42 (248)
.....+++|.|+...++--
T Consensus 5 ~~~~~~~tv~N~g~~~~~~ 23 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTN 23 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS
T ss_pred CEEEEEEEEEECCCCceee
Confidence 3456789999999877643
No 37
>TIGR00576 dut deoxyuridine 5'-triphosphate nucleotidohydrolase (dut). Changed role from 132 to 123. RTD
Probab=23.04 E-value=1.2e+02 Score=24.91 Aligned_cols=30 Identities=30% Similarity=0.503 Sum_probs=22.0
Q ss_pred CCceeeCCCCee------EEecCCCCceeEEeeecc
Q 025749 55 RGGFKLPPNKAY------TIRLPPLWSGRFWGRHGC 84 (248)
Q Consensus 55 ~~g~~L~~G~s~------s~~vp~~WsGriWaRtgC 84 (248)
.....|.||++. .+.+|.+|.|.|++|.+-
T Consensus 28 ~~d~~i~P~~~~lv~tg~~v~ip~g~~~~i~~RSsl 63 (141)
T TIGR00576 28 AEDVTIPPGERALVPTGIAIELPDGYYGRVAPRSGL 63 (141)
T ss_pred CCCeEECCCCEEEEEeCcEEecCCCEEEEEEecccC
Confidence 335678888765 345788999999999643
No 38
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=23.01 E-value=2.4e+02 Score=22.35 Aligned_cols=58 Identities=16% Similarity=0.301 Sum_probs=39.5
Q ss_pred ccccceEEEEEeCCCCcccceeec-----CC----------CC--ccccCCceeeCCCCeeEEecCC-CCceeEEe
Q 025749 23 HNIKATTITLFNKCEHPVWPGIQA-----SA----------GK--PLLARGGFKLPPNKAYTIRLPP-LWSGRFWG 80 (248)
Q Consensus 23 ~~a~~~t~ti~N~C~~tVw~~~~~-----~~----------g~--~~~~~~g~~L~~G~s~s~~vp~-~WsGriWa 80 (248)
++-...++.|+|...-+|++|..- |. |. .-+.++..+.+||+++++++-+ +=..+|+|
T Consensus 17 ~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG~r~v~G 92 (101)
T TIGR00192 17 EGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVAIGGNRRIYG 92 (101)
T ss_pred CCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEEccCceEEEc
Confidence 456779999999999999999741 11 11 1124556788999999998533 33445655
No 39
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=22.94 E-value=93 Score=23.85 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=19.9
Q ss_pred eeeCCCCeeEEecCCCCceeEEeeec
Q 025749 58 FKLPPNKAYTIRLPPLWSGRFWGRHG 83 (248)
Q Consensus 58 ~~L~~G~s~s~~vp~~WsGriWaRtg 83 (248)
..|+||+++++.+|..|..-++...|
T Consensus 4 i~l~~g~~~~~~~~~~~~~~iyv~~G 29 (104)
T PF05726_consen 4 IKLEPGASFTLPLPPGHNAFIYVLEG 29 (104)
T ss_dssp EEE-TT-EEEEEEETT-EEEEEEEES
T ss_pred EEECCCCEEEeecCCCCEEEEEEEEC
Confidence 57999999999999999988888764
No 40
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=22.84 E-value=2.8e+02 Score=24.70 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=26.6
Q ss_pred cccceEEEEEeCCCCcccceee--cCC--CC-ccc--cCCceeeCCCCeeEEec
Q 025749 24 NIKATTITLFNKCEHPVWPGIQ--ASA--GK-PLL--ARGGFKLPPNKAYTIRL 70 (248)
Q Consensus 24 ~a~~~t~ti~N~C~~tVw~~~~--~~~--g~-~~~--~~~g~~L~~G~s~s~~v 70 (248)
.....+|+|.|+=..++-.-.. ... +. .++ .+--|+|+||+...+.+
T Consensus 36 ~~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI 89 (229)
T PRK15211 36 GRKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRI 89 (229)
T ss_pred CCceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEE
Confidence 4456889999987765322211 111 11 111 13358999998887764
No 41
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=21.08 E-value=2.2e+02 Score=21.07 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=30.0
Q ss_pred ccccceEEEEEeCCCCcccceeecCC-CCccc--cCCceeeCCCCeeEEec
Q 025749 23 HNIKATTITLFNKCEHPVWPGIQASA-GKPLL--ARGGFKLPPNKAYTIRL 70 (248)
Q Consensus 23 ~~a~~~t~ti~N~C~~tVw~~~~~~~-g~~~~--~~~g~~L~~G~s~s~~v 70 (248)
......+|+|.|....+.-.-+.... ....+ ....-.|.||.+.++.|
T Consensus 19 g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V 69 (102)
T PF14874_consen 19 GQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEV 69 (102)
T ss_pred CCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEE
Confidence 34567899999999887655543222 11111 12223799999988886
No 42
>cd07557 trimeric_dUTPase Trimeric dUTP diphosphatases. Trimeric dUTP diphosphatases, or dUTPases, are the most common family of dUTPase, found in bacteria, eukaryotes, and archaea. They catalyze the hydrolysis of the dUTP-Mg complex (dUTP-Mg) into dUMP and pyrophosphate. This reaction is crucial for the preservation of chromosomal integrity as it removes dUTP and therefore reduces the cellular dUTP/dTTP ratio, and prevents dUTP from being incorporated into DNA. It also provides dUMP as the precursor for dTTP synthesis via the thymidylate synthase pathway. dUTPases are homotrimeric, except some monomeric viral dUTPases, which have been shown to mimic a trimer. Active sites are located at the subunit interface.
Probab=20.19 E-value=1.3e+02 Score=22.06 Aligned_cols=28 Identities=32% Similarity=0.606 Sum_probs=20.1
Q ss_pred ceeeCCCCee------EEecCCCCceeEEeeecc
Q 025749 57 GFKLPPNKAY------TIRLPPLWSGRFWGRHGC 84 (248)
Q Consensus 57 g~~L~~G~s~------s~~vp~~WsGriWaRtgC 84 (248)
.+.|+|+++. .+.+|.++.|.|++|.+-
T Consensus 13 ~~~i~P~~~~~v~t~~~i~~p~~~~~~i~~RSs~ 46 (92)
T cd07557 13 GIVLPPGETVLVPTGEAIELPEGYVGLVFPRSSL 46 (92)
T ss_pred CEEEcCCCEEEEEEeEEEEcCCCeEEEEEcCchh
Confidence 3677777643 345788999999998653
No 43
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=20.11 E-value=2.7e+02 Score=23.10 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHhhccccceEEEEEeCCCCccccee-ecC-------CCCccccCCceeeCCCCeeEEec
Q 025749 5 MLLRSLLALLLTTIVLFSHNIKATTITLFNKCEHPVWPGI-QAS-------AGKPLLARGGFKLPPNKAYTIRL 70 (248)
Q Consensus 5 ~~~~~~~~l~~~~~~~~~~~a~~~t~ti~N~C~~tVw~~~-~~~-------~g~~~~~~~g~~L~~G~s~s~~v 70 (248)
|+....+-|||+ ..+.|..+.|+++=+--.+.||-. ... +++-...+.-.+++.|...++.+
T Consensus 6 ~~~~~~~~~~~~----~~~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~v 75 (135)
T TIGR03096 6 MFAGFALGLLLM----GTAQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTV 75 (135)
T ss_pred HhHHHHHHHhhc----cchhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEE
Confidence 444444445554 334555678888888778888765 221 12222334457888888877754
Done!