Query 025751
Match_columns 248
No_of_seqs 309 out of 1330
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 16:48:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 3.1E-26 1E-30 166.4 6.3 60 74-133 2-62 (63)
2 3igm_B PF14_0633 protein; AP2 83.1 0.89 3.1E-05 33.8 3.2 27 70-98 3-30 (77)
3 1u3e_M HNH homing endonuclease 76.1 0.48 1.6E-05 39.0 -0.3 39 75-116 109-147 (174)
4 3jtz_A Integrase; four strande 74.9 5.4 0.00018 29.6 5.3 44 78-121 28-75 (88)
5 1z1b_A Integrase; protein-DNA 68.6 5.8 0.0002 34.2 4.9 39 77-119 15-53 (356)
6 3ju0_A Phage integrase; four s 61.1 12 0.00042 28.7 4.9 44 78-121 28-75 (108)
7 1x60_A Sporulation-specific N- 36.1 17 0.00057 25.4 1.8 24 95-118 44-67 (79)
8 1uta_A FTSN, MSGA, cell divisi 32.5 35 0.0012 24.0 3.1 25 95-119 44-68 (81)
9 2ftc_I Mitochondrial ribosomal 25.2 92 0.0032 24.3 4.6 37 85-123 79-115 (118)
10 1b69_A Protein (integrase); in 20.9 1.1E+02 0.0036 22.0 3.8 28 73-100 10-38 (69)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.93 E-value=3.1e-26 Score=166.35 Aligned_cols=60 Identities=57% Similarity=0.959 Sum_probs=57.4
Q ss_pred ceeeeEeCCCCcEEEEEecCCC-CeeeecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 025751 74 TYRGVRMRQWGKWVSEIREPRK-KSRIWLGTFATPEMAARAHDVAALAIKGHSAYLNFPEL 133 (248)
Q Consensus 74 ~yRGVr~r~~GkW~AeIr~p~~-~kriwLGtf~T~EeAArAYD~AA~~l~G~~a~lNFp~~ 133 (248)
+||||++|+||||+|+|++|.+ +++||||+|+|+||||+|||.|+++++|.++.||||++
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999999999999999999975 69999999999999999999999999999999999986
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=83.15 E-value=0.89 Score=33.80 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=21.6
Q ss_pred CCCCceeeeEeC-CCCcEEEEEecCCCCee
Q 025751 70 LKHPTYRGVRMR-QWGKWVSEIREPRKKSR 98 (248)
Q Consensus 70 ~~ss~yRGVr~r-~~GkW~AeIr~p~~~kr 98 (248)
..+|+|.||+|. +.+.|+|+-.+ ++++
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~r 30 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYD--GASR 30 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEE--TTEE
T ss_pred CCCCCCCcEEeecCCceEEEEEec--CCeE
Confidence 367899999888 67999999999 4544
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=76.12 E-value=0.48 Score=39.00 Aligned_cols=39 Identities=5% Similarity=-0.034 Sum_probs=29.2
Q ss_pred eeeeEeCCCCcEEEEEecCCCCeeeecCCCCCHHHHHHHHHH
Q 025751 75 YRGVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDV 116 (248)
Q Consensus 75 yRGVr~r~~GkW~AeIr~p~~~kriwLGtf~T~EeAArAYD~ 116 (248)
++||.+.+.++|.+.|.. . +.++||.|.|.+|||++|..
T Consensus 109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~Gv 147 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELGL 147 (174)
T ss_dssp HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHTC
T ss_pred eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHCc
Confidence 456644333568888887 4 56789999999999999653
No 4
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=74.89 E-value=5.4 Score=29.60 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=31.0
Q ss_pred eEeCCCC--cEEEEEecCCCCeeeecCCCC--CHHHHHHHHHHHHHHh
Q 025751 78 VRMRQWG--KWVSEIREPRKKSRIWLGTFA--TPEMAARAHDVAALAI 121 (248)
Q Consensus 78 Vr~r~~G--kW~AeIr~p~~~kriwLGtf~--T~EeAArAYD~AA~~l 121 (248)
|+-.+.| .|+-+.+..++.+++-||.|+ |.++|....+.+...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 3444444 599998886666789999997 5777777666655544
No 5
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=68.61 E-value=5.8 Score=34.15 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=28.2
Q ss_pred eeEeCCCCcEEEEEecCCCCeeeecCCCCCHHHHHHHHHHHHH
Q 025751 77 GVRMRQWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAAL 119 (248)
Q Consensus 77 GVr~r~~GkW~AeIr~p~~~kriwLGtf~T~EeAArAYD~AA~ 119 (248)
||++++.|.|..+.+. .|+++.+|. |..+|......+..
T Consensus 15 ~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~ 53 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANI 53 (356)
T ss_dssp TEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHH
Confidence 5777777899877654 777899996 88887766554433
No 6
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=61.05 E-value=12 Score=28.70 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=30.2
Q ss_pred eEeCCCC--cEEEEEecCCCCeeeecCCCC--CHHHHHHHHHHHHHHh
Q 025751 78 VRMRQWG--KWVSEIREPRKKSRIWLGTFA--TPEMAARAHDVAALAI 121 (248)
Q Consensus 78 Vr~r~~G--kW~AeIr~p~~~kriwLGtf~--T~EeAArAYD~AA~~l 121 (248)
|+-.+.| .|+-+.+..++.+++-||.|+ |..+|....+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 3444444 499998886666788999997 5777776666554444
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=36.05 E-value=17 Score=25.37 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=18.9
Q ss_pred CCeeeecCCCCCHHHHHHHHHHHH
Q 025751 95 KKSRIWLGTFATPEMAARAHDVAA 118 (248)
Q Consensus 95 ~~kriwLGtf~T~EeAArAYD~AA 118 (248)
.--||++|.|.+.++|.++-+...
T Consensus 44 ~~yRV~vGpf~~~~~A~~~~~~L~ 67 (79)
T 1x60_A 44 GLYKVQIGAFSSKDNADTLAARAK 67 (79)
T ss_dssp TEEEEEEEEESSHHHHHHHHHHHH
T ss_pred cEEEEEECCcCCHHHHHHHHHHHH
Confidence 346899999999999988866543
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=32.51 E-value=35 Score=24.00 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=19.5
Q ss_pred CCeeeecCCCCCHHHHHHHHHHHHH
Q 025751 95 KKSRIWLGTFATPEMAARAHDVAAL 119 (248)
Q Consensus 95 ~~kriwLGtf~T~EeAArAYD~AA~ 119 (248)
.--||.+|-|.+.++|.++-+....
T Consensus 44 ~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 44 GWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp SSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred cEEEEEECCcCCHHHHHHHHHHHHH
Confidence 4468999999999999888655443
No 9
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=25.24 E-value=92 Score=24.25 Aligned_cols=37 Identities=14% Similarity=0.089 Sum_probs=30.0
Q ss_pred cEEEEEecCCCCeeeecCCCCCHHHHHHHHHHHHHHhcC
Q 025751 85 KWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALAIKG 123 (248)
Q Consensus 85 kW~AeIr~p~~~kriwLGtf~T~EeAArAYD~AA~~l~G 123 (248)
.|+|.|.. +..-+-++...+++.|..|...|+.+|=+
T Consensus 79 ~wva~Vk~--G~ilfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 79 HYVTPVKA--GRLVVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEEECC--CCEEEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 39999987 66666677778899999999999988743
No 10
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=20.91 E-value=1.1e+02 Score=22.03 Aligned_cols=28 Identities=11% Similarity=0.173 Sum_probs=20.6
Q ss_pred CceeeeEeCCCCcEEEEEecCC-CCeeee
Q 025751 73 PTYRGVRMRQWGKWVSEIREPR-KKSRIW 100 (248)
Q Consensus 73 s~yRGVr~r~~GkW~AeIr~p~-~~kriw 100 (248)
.-+.|+.+|..|+|+..+.+.. +.+.||
T Consensus 10 ~L~~GesqR~dG~Y~yry~d~~Gkr~~vY 38 (69)
T 1b69_A 10 ILKTGESQRKDGRYLYKYIDSFGEPQFVY 38 (69)
T ss_dssp CCCTTEEECSSSCEEEEEECTTSSEEEEE
T ss_pred ccCCCeEEccCCcEEEEEEcCCCCEEEEE
Confidence 3577999998899999999863 334444
Done!