BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025752
         (248 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|C1H3X3|AMPP2_PARBA Probable Xaa-Pro aminopeptidase PAAG_05466 OS=Paracoccidioides
           brasiliensis (strain ATCC MYA-826 / Pb01) GN=PAAG_05466
           PE=3 SV=1
          Length = 415

 Score = 35.8 bits (81), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 11/98 (11%)

Query: 68  EQFYAQVVATHGSAKHLPASCTSRLSPGLCFFP-QYMARQITTPLFIINAAYDSWQIKNI 126
           EQ YA V       +++  SC  R+  G+ +    Y+A  I    F+    + + + + I
Sbjct: 222 EQIYALV-------QNMQESCILRIKEGVRYLDLHYLAHDILIHGFLAIGIFKAGRAEEI 274

Query: 127 LAPGVAD---PHGTWHSCKLDINNCSPTQLQTMQSFRT 161
              G +    PHG  H   L++++ SP  L    + RT
Sbjct: 275 KKSGASSLFFPHGLGHHIGLEVHDVSPDSLFAQDNDRT 312


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.136    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,267,012
Number of Sequences: 539616
Number of extensions: 3679913
Number of successful extensions: 9696
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 9696
Number of HSP's gapped (non-prelim): 2
length of query: 248
length of database: 191,569,459
effective HSP length: 114
effective length of query: 134
effective length of database: 130,053,235
effective search space: 17427133490
effective search space used: 17427133490
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)