Query 025752
Match_columns 248
No_of_seqs 174 out of 260
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 09:09:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025752.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025752hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4287 Pectin acetylesterase 100.0 1.3E-90 2.8E-95 640.3 9.7 233 9-241 20-402 (402)
2 PF03283 PAE: Pectinacetyleste 100.0 5E-65 1.1E-69 478.2 8.0 208 13-225 2-361 (361)
3 PF11420 Subtilosin_A: Bacteri 49.3 7.1 0.00015 24.9 0.5 19 35-53 6-25 (35)
4 KOG2833 Mevalonate pyrophospha 32.6 22 0.00049 34.1 1.2 32 27-65 252-283 (395)
5 PF00086 Thyroglobulin_1: Thyr 27.1 82 0.0018 22.5 3.2 29 160-188 5-33 (68)
6 COG1239 ChlI Mg-chelatase subu 25.2 43 0.00094 33.0 1.8 32 203-236 49-80 (423)
7 PF02960 K1: K1 glycoprotein; 23.9 34 0.00073 28.1 0.6 23 184-217 92-114 (130)
8 PF10873 DUF2668: Protein of u 22.2 39 0.00085 28.8 0.7 11 39-49 36-46 (155)
9 PF11632 LcnG-beta: Lactococci 21.4 19 0.00041 23.1 -1.0 14 47-60 10-23 (35)
10 PF12070 DUF3550: Protein of u 20.6 50 0.0011 33.4 1.2 22 94-115 365-386 (513)
No 1
>KOG4287 consensus Pectin acetylesterase and similar proteins [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.3e-90 Score=640.25 Aligned_cols=233 Identities=52% Similarity=1.049 Sum_probs=224.5
Q ss_pred HHHHHHHHHHHHHhcCceeeeEEeccccccCceecCCCCCceeccCCCCCCcchHHHHHH--------------------
Q 025752 9 WLNLLVCALILLKADGFNVGITYVENAVVKGAVCLDGSPPAYHFDKGFGAGINNWLVHIE-------------------- 68 (248)
Q Consensus 9 ~~~~~~~~l~~~~~~~~~v~~tl~~~a~~~gA~ClDGs~p~y~~~~G~g~g~~~wl~~~e-------------------- 68 (248)
|...++...+.+..++.+|+||||+.|++|||||||||+|||||+||+|||+||||||||
T Consensus 20 ~s~~lv~~~~~~~s~~~~v~ltli~~A~akGAvClDGSlpgYhl~~g~GSg~n~wliqlegGgwC~~i~sCv~Rk~tr~G 99 (402)
T KOG4287|consen 20 WSIPLVFGSLVIGSPGLMVPLTLIRGAAAKGAVCLDGSLPGYHLHRGSGSGANNWLIQLEGGGWCNNIRSCVYRKMTRLG 99 (402)
T ss_pred hhhhhhhhhhcccCccccchhHHHhhHhhcCceecCCCCcceeeccCCCccccceeEecccccccccchhHHHHhhcccc
Confidence 555566666666667789999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q 025752 69 -------------------------------------------------------------------------------- 68 (248)
Q Consensus 69 -------------------------------------------------------------------------------- 68 (248)
T Consensus 100 SS~~mek~~~FtGILS~k~~eNPdF~NWNrVkvRYCDGasFsGd~e~~~~t~l~fRG~rIw~av~~eLl~kGms~Ak~al 179 (402)
T KOG4287|consen 100 SSNYMEKELAFTGILSNKPSENPDFYNWNRVKVRYCDGASFSGDSENKNATQLQFRGARIWLAVMDELLAKGMSNAKQAL 179 (402)
T ss_pred ccccchhhcceeEEecCCcccCCcccccceeEEeecCCCcccCcccccchhhhhhhHHHHHHHHHHHHHHhhhhHHHHHH
Confidence
Q ss_pred --------------------------------------------------HHHHHHHHHhcCCCccccccccCCCCcccC
Q 025752 69 --------------------------------------------------QFYAQVVATHGSAKHLPASCTSRLSPGLCF 98 (248)
Q Consensus 69 --------------------------------------------------~~~~~vv~l~g~~~~lp~~C~~~~~p~kCf 98 (248)
++|++||++||++|+||+.|+++.+|++||
T Consensus 180 LsGcSAGGLa~iLhCD~Fr~~lp~~t~VKClSDaG~FLd~~dv~g~~t~~~~~~~vv~lqg~~k~Lp~~Ct~~~~p~~Cf 259 (402)
T KOG4287|consen 180 LSGCSAGGLASILHCDEFRELLPPTTKVKCLSDAGFFLDAKDVSGGPTLRSYYAGVVTLQGLQKNLPQSCTSHLEPSLCF 259 (402)
T ss_pred hhcCCccchhheeehHHHHhhCCCCceeEEecccceeeecccccCCcchhhhhhhheeeecccccCCHHHHhcCCchhhc
Confidence 999999999999999999999999999999
Q ss_pred chhhhhhccCCChhhhhhhhhHHHHhhccCCCCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCeE
Q 025752 99 FPQYMARQITTPLFIINAAYDSWQIKNILAPGVADPHGTWHSCKLDINNCSPTQLQTMQSFRTQFLNALAGLGISSSRGM 178 (248)
Q Consensus 99 Fpq~~~~~I~TPlFilnsaYD~WQi~nil~p~~~dp~g~W~~Ck~~~~~Cs~~Ql~~lq~fr~~~l~aL~~~~~~~~~G~ 178 (248)
||||++++||||+||+|++||+|||++.|+|+++||+|.|+.||+|+..|+++|++++|+||.+||.+++.+.+++++|+
T Consensus 260 Fpq~v~~~irtP~F~vN~afD~wQi~~~laP~s~d~~g~w~~ckl~~~~c~~~q~~~~qgFr~~ml~a~~~f~~~~~~g~ 339 (402)
T KOG4287|consen 260 FPQYVLKTIRTPVFLVNAAFDSWQIQNSLAPTSADPSGSWKYCKLNHRECTAAQIDFLQGFRPQMLDAVKIFSSSKQNGL 339 (402)
T ss_pred chHHHHhhcCCceEehhhhhhHHhccCCCCCCCCCcccchhhcccccccCCHHHHHHHHHHHHHHHHHhhhheecccCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccccccccccccCCccccCCccHHHHhhhhhccCCCceeeccCCCCCCCCCCCCcC
Q 025752 179 FIDACYAHCQTEMQETWLRTDSPVLGKMSIAKAVGDWYYDRSPFQKIDCAYPCNPTCHNRVFD 241 (248)
Q Consensus 179 Fi~SC~~Hcqs~~~~tW~~~~sp~i~~kTia~AvgdWyf~r~~~~~IDC~yPCNpTC~~~~~~ 241 (248)
||+||++|||+++++||+++++|+++|||||+|||||||+|..+|+|||||||||||||++|.
T Consensus 340 finsc~aHCq~~~~~tW~~~~sp~i~~k~iA~aVgdWyf~R~~vklIDCPyPCn~tC~nl~~~ 402 (402)
T KOG4287|consen 340 FINSCFAHCQTERQDTWFADDSPAIKNKTIAEAVGDWYFDRAKVKLIDCPYPCNPTCHNLSFE 402 (402)
T ss_pred eechHHHhhcccccccccCCCCccccCchhhhhhcceecccceeeeccCCCCCCCCCccccCC
Confidence 999999999999999999999999999999999999999998899999999999999999874
No 2
>PF03283 PAE: Pectinacetylesterase
Probab=100.00 E-value=5e-65 Score=478.22 Aligned_cols=208 Identities=50% Similarity=0.981 Sum_probs=198.6
Q ss_pred HHHHHHHHHhcCceeeeEEeccccccCceecCCCCCceeccCCCCCCcchHHHHHH------------------------
Q 025752 13 LVCALILLKADGFNVGITYVENAVVKGAVCLDGSPPAYHFDKGFGAGINNWLVHIE------------------------ 68 (248)
Q Consensus 13 ~~~~l~~~~~~~~~v~~tl~~~a~~~gA~ClDGs~p~y~~~~G~g~g~~~wl~~~e------------------------ 68 (248)
|+|+++...++.+.|+||+|++|.++||+|||||||+||++||+|+|+++||||||
T Consensus 2 ~~~~~~~~~~~~~~~~l~~l~~~~~~~a~C~DGS~~~yy~~~g~g~~s~~~li~leGGG~C~~~~tC~~r~~t~~gss~~ 81 (361)
T PF03283_consen 2 LICLLVASNAQSDEVKLTLLDDAVDTGAVCLDGSPPGYYFRPGSGSGSNKWLIFLEGGGWCWDAETCAQRSSTNLGSSKN 81 (361)
T ss_pred eEEEeeeccccccccceEEecCCCCCCCCcCCCCCCcEEEccCCCCCCceEEEEeccchhcCChhHHhhhccCccccccc
Confidence 45666667778899999999999999999999999999999999999999999999
Q ss_pred --------------------------------------------------------------------------------
Q 025752 69 -------------------------------------------------------------------------------- 68 (248)
Q Consensus 69 -------------------------------------------------------------------------------- 68 (248)
T Consensus 82 ~~~~~~~~Gils~~~~~Np~f~~wN~V~vpYC~Gd~~~G~~~~~~~~~~~l~frG~~i~~avl~~l~~~gl~~a~~vllt 161 (361)
T PF03283_consen 82 WPKTFAFSGILSNDPAENPDFYNWNHVFVPYCDGDSHSGDVEPVDYGGTTLYFRGYRILRAVLDDLLSNGLPNAKQVLLT 161 (361)
T ss_pred hhhhccccccccCCcccCCccccccEEEEEecCCccccCcccccccCCceeEeecHHHHHHHHHHHHHhcCcccceEEEe
Confidence
Q ss_pred ------------------------------------------------HHHHHHHHHhcCCCccccccccCCCCcccCch
Q 025752 69 ------------------------------------------------QFYAQVVATHGSAKHLPASCTSRLSPGLCFFP 100 (248)
Q Consensus 69 ------------------------------------------------~~~~~vv~l~g~~~~lp~~C~~~~~p~kCfFp 100 (248)
.+|++++++|+.++++|++|++..++. ||||
T Consensus 162 G~SAGG~g~~~~~d~~~~~lp~~~~v~~~~DsG~f~d~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~C~~~~~~~-C~f~ 240 (361)
T PF03283_consen 162 GCSAGGLGAILHADYVRDRLPSSVKVKCLSDSGFFLDNPDYSGNPCIRSFYSDVVGLQNWSKSLPESCVAQYDPE-CFFP 240 (361)
T ss_pred ccChHHHHHHHHHHHHHHHhccCceEEEeccccccccccCcccchhHHHHHHHHHHHHHhhccCCHhHHhccCcc-ccch
Confidence 789999999999999999999987777 9999
Q ss_pred hhhhhccCCChhhhhhhhhHHHHhhccCCCCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHHhhccCCCCCeEEe
Q 025752 101 QYMARQITTPLFIINAAYDSWQIKNILAPGVADPHGTWHSCKLDINNCSPTQLQTMQSFRTQFLNALAGLGISSSRGMFI 180 (248)
Q Consensus 101 q~~~~~I~TPlFilnsaYD~WQi~nil~p~~~dp~g~W~~Ck~~~~~Cs~~Ql~~lq~fr~~~l~aL~~~~~~~~~G~Fi 180 (248)
||++|+|+||+|||||+||+|||+|+|+|+. +.|.+|+.++.+|+++|+++||+||++|+++|+++.+++++|+||
T Consensus 241 q~~~~~I~tPlFivns~YD~wQl~~il~p~~----~~w~~c~~~~~~Cs~~Ql~~lq~fr~~~~~aL~~~~~~~~~G~Fi 316 (361)
T PF03283_consen 241 QYLYPYIKTPLFIVNSLYDSWQLQNILVPPS----GSWISCKNDLPPCSPSQLDYLQGFRSEMLDALKNVSNSPNWGVFI 316 (361)
T ss_pred HHHHhhcCcceeeehhhhCHHHhhcccCCCc----ccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEC
Confidence 9999999999999999999999999999965 999999999999999999999999999999999999999999999
Q ss_pred cCcccccccccccccccCCccccCCccHHHHhhhhhccCCCceee
Q 025752 181 DACYAHCQTEMQETWLRTDSPVLGKMSIAKAVGDWYYDRSPFQKI 225 (248)
Q Consensus 181 ~SC~~Hcqs~~~~tW~~~~sp~i~~kTia~AvgdWyf~r~~~~~I 225 (248)
+||++|||++.+++|+++++|+|+|+||+|||+||||+|+.+|+|
T Consensus 317 ~SC~~Hcq~~~~~~W~~~~~p~v~g~tia~Av~dW~~~r~~~~~~ 361 (361)
T PF03283_consen 317 PSCFAHCQSESSDTWNSPDSPRVNGKTIAEAVGDWYFSRSEVKKI 361 (361)
T ss_pred ccchhhcccccCCcccCCCcccCCCEEHHHHHHHHHhcccccccC
Confidence 999999999999999999999999999999999999999988876
No 3
>PF11420 Subtilosin_A: Bacteriocin subtilosin A; InterPro: IPR021539 Subtilosin A is a bacteriocin from Bacillus subtilis.The protein has a cyclized peptide backbone and forms three cross-liks between the sulphurs of Cys13, Cys7 and Cys4 and the alpha-positions of Phe22,Thr28 and Phe31 []. ; PDB: 1PXQ_A.
Probab=49.30 E-value=7.1 Score=24.93 Aligned_cols=19 Identities=37% Similarity=0.784 Sum_probs=5.7
Q ss_pred ccccCceec-CCCCCceecc
Q 025752 35 AVVKGAVCL-DGSPPAYHFD 53 (248)
Q Consensus 35 a~~~gA~Cl-DGs~p~y~~~ 53 (248)
+-+.||-|| ||--|-|-..
T Consensus 6 ~csigaacl~dgpipdfeia 25 (35)
T PF11420_consen 6 TCSIGAACLVDGPIPDFEIA 25 (35)
T ss_dssp TT-S-----TTTT---S--S
T ss_pred ecccchhhhccCCCCcchhh
Confidence 456799999 9999987653
No 4
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=32.56 E-value=22 Score=34.13 Aligned_cols=32 Identities=28% Similarity=0.562 Sum_probs=22.4
Q ss_pred eeeEEeccccccCceecCCCCCceeccCCCCCCcchHHH
Q 025752 27 VGITYVENAVVKGAVCLDGSPPAYHFDKGFGAGINNWLV 65 (248)
Q Consensus 27 v~~tl~~~a~~~gA~ClDGs~p~y~~~~G~g~g~~~wl~ 65 (248)
-.||.-++ ..--|+|||-+||-+|+. ..+|-|
T Consensus 252 A~lTm~DS-NqFHAvclDT~PPI~YmN------d~S~~i 283 (395)
T KOG2833|consen 252 AKLTMKDS-NQFHAVCLDTFPPIFYLN------DTSWRI 283 (395)
T ss_pred HHHHHhcc-hhhhhhhhccCCCeEEec------cchHHH
Confidence 34444444 345799999999999994 446754
No 5
>PF00086 Thyroglobulin_1: Thyroglobulin type-1 repeat; InterPro: IPR000716 Thyroglobulin (Tg) is a large glycoprotein specific to the thyroid gland and is the precursor of the iodinated thyroid hormones thyroxine (T4) and triiodothyronine (T3). The N-terminal section of Tg contains 10 repeats of a domain of about 65 amino acids which is known as the Tg type-1 repeat [, ]. Such a domain has also been found as a single or repeated sequence in the HLA class II associated invariant chain []; human pancreatic carcinoma marker proteins GA733-1 and GA733-2 []; nidogen (entactin), a sulphated glycoprotein which is widely distributed in basement membranes and that is tightly associated with laminin; insulin-like growth factor binding proteins (IGFBP) []; saxiphilin, a transferrin-like protein from Rana catesbeiana (Bull frog) that binds specifically to the neurotoxin saxitoxin []; chum salmon egg cysteine proteinase inhibitor, and equistatin, a thiol-protease inhibitor from Actinia equina (sea anemone) []. The existence of Thyr-1 domains in such a wide variety of proteins raises questions about their activity and function, and their interactions with neighbouring domains. The Thyr-1 and related domains belong to MEROPS proteinase inhibitor family I31, clan IX. Equistatin from A. equina is composed of three Thyr-1 domains; as with other proteins that contains Thyr-1 domains, the thyropins, they bind reversibly and tightly to cysteine proteases (inhibitor family C1). In equistatin inhibition of papain is a function of domain-1. Unusually domain-2 inhibits cathepsin D, an aspartic protease (inhibitor family A1) and has no activity against papain. Domain-3, does not inhibit either papain or cathepsin D, and its function or its target peptidase has yet to be determined [, ].; PDB: 2H7T_A 2DSR_G 1RMJ_A 1ICF_I 1L3H_A 1ZT3_A 2DSQ_H 1ZT5_A.
Probab=27.14 E-value=82 Score=22.53 Aligned_cols=29 Identities=31% Similarity=0.437 Sum_probs=19.4
Q ss_pred HHHHHHHHhhccCCCCCeEEecCcccccc
Q 025752 160 RTQFLNALAGLGISSSRGMFIDACYAHCQ 188 (248)
Q Consensus 160 r~~~l~aL~~~~~~~~~G~Fi~SC~~Hcq 188 (248)
|.++++.++........++|+|.|-.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~P~C~~~G~ 33 (68)
T PF00086_consen 5 RERALERLESERSSSSDGVFVPQCDEDGS 33 (68)
T ss_dssp HHHHHHHHHHHSTSCCSECEEE-B-TTSS
T ss_pred HHHHHHHHHHhcccCCCCCcCceeCCCCC
Confidence 44566666665677889999999986643
No 6
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=25.24 E-value=43 Score=33.05 Aligned_cols=32 Identities=22% Similarity=0.480 Sum_probs=25.2
Q ss_pred cCCccHHHHhhhhhccCCCceeeccCCCCCCCCC
Q 025752 203 LGKMSIAKAVGDWYYDRSPFQKIDCAYPCNPTCH 236 (248)
Q Consensus 203 i~~kTia~AvgdWyf~r~~~~~IDC~yPCNpTC~ 236 (248)
....|++.|+.+=+-+...++ +|||+|+|+=+
T Consensus 49 taKSt~~Rala~LLp~~~~V~--gc~f~cdP~~P 80 (423)
T COG1239 49 TAKSTLARALADLLPEIEVVI--GCPFNCDPDDP 80 (423)
T ss_pred ccHHHHHHHHHHhCCccceec--CCCCCCCCCCh
Confidence 344589999999888777664 99999988644
No 7
>PF02960 K1: K1 glycoprotein; InterPro: IPR004121 Current genotyping systems for Human herpesvirus 8 (HHV-8) are based on the highly variable gene encoding the K1 glycoprotein []. This entry represents the C-terminal region of the K1 glycoprotein.
Probab=23.91 E-value=34 Score=28.08 Aligned_cols=23 Identities=26% Similarity=0.652 Sum_probs=18.8
Q ss_pred ccccccccccccccCCccccCCccHHHHhhhhhc
Q 025752 184 YAHCQTEMQETWLRTDSPVLGKMSIAKAVGDWYY 217 (248)
Q Consensus 184 ~~Hcqs~~~~tW~~~~sp~i~~kTia~AvgdWyf 217 (248)
|+|||-+ +-+|||.++-+.|.|-
T Consensus 92 fahcqkq-----------~dSnkTvpqql~dyys 114 (130)
T PF02960_consen 92 FAHCQKQ-----------RDSNKTVPQQLRDYYS 114 (130)
T ss_pred HHHhccc-----------ccccccchHHHHhhhh
Confidence 7999954 4568999999999885
No 8
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=22.24 E-value=39 Score=28.82 Aligned_cols=11 Identities=36% Similarity=0.824 Sum_probs=9.5
Q ss_pred CceecCCCCCc
Q 025752 39 GAVCLDGSPPA 49 (248)
Q Consensus 39 gA~ClDGs~p~ 49 (248)
++.|-|||+|.
T Consensus 36 ~~~Ccd~~~~~ 46 (155)
T PF10873_consen 36 TSYCCDGTTPY 46 (155)
T ss_pred cceecCCCCcc
Confidence 68999999974
No 9
>PF11632 LcnG-beta: Lactococcin G-beta; InterPro: IPR021089 This entry represents Lactococcin-G subunit beta with subunit alpha constitutes the two-peptide bacteriocin lactococcin G. This family of proteins represents the N-terminal domain which has an alpha-helical structure and is amphiphilic. Both peptides have a GxxxG motif which they use for interaction through a helix-helix structure []. It is thought to kill Lactococci [].; PDB: 2JPK_A 2JPM_A.
Probab=21.38 E-value=19 Score=23.15 Aligned_cols=14 Identities=71% Similarity=1.303 Sum_probs=11.5
Q ss_pred CCceeccCCCCCCc
Q 025752 47 PPAYHFDKGFGAGI 60 (248)
Q Consensus 47 ~p~y~~~~G~g~g~ 60 (248)
.|+|-|-.|+|-|+
T Consensus 10 ~pay~fi~g~~kg~ 23 (35)
T PF11632_consen 10 QPAYDFIKGFGKGI 23 (35)
T ss_dssp HHHHHHHHCCTTTT
T ss_pred chHHHHHHHHhhhh
Confidence 38999999998864
No 10
>PF12070 DUF3550: Protein of unknown function (DUF3550/UPF0682); InterPro: IPR022709 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 249 to 606 amino acids in length.
Probab=20.56 E-value=50 Score=33.42 Aligned_cols=22 Identities=27% Similarity=0.547 Sum_probs=19.8
Q ss_pred CcccCchhhhhhccCCChhhhh
Q 025752 94 PGLCFFPQYMARQITTPLFIIN 115 (248)
Q Consensus 94 p~kCfFpq~~~~~I~TPlFiln 115 (248)
.-.|.+|--++|+.|.|+|||-
T Consensus 365 ~~~~LyP~DL~PFTRkPLFlIV 386 (513)
T PF12070_consen 365 EMHCLYPGDLYPFTRKPLFLIV 386 (513)
T ss_pred CCcccchhhccccccCCeEEEE
Confidence 3489999999999999999874
Done!