Query 025752
Match_columns 248
No_of_seqs 174 out of 260
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 16:50:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025752.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025752hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pxq_A Subtilisin A; thioether 55.1 4.2 0.00014 25.0 1.0 19 35-53 6-25 (35)
2 2nx6_A Nematocyst outer WALL a 33.2 15 0.00051 21.2 0.9 12 227-238 5-18 (27)
3 2xfv_A Regulatory protein SWI6 33.0 11 0.00038 29.7 0.5 26 23-49 11-36 (125)
4 1m55_A REP protein; endonuclea 19.2 1.4E+02 0.0047 25.4 4.7 62 48-109 86-160 (197)
5 2k9p_A Pheromone alpha factor 15.8 42 0.0014 24.5 0.6 12 106-117 45-56 (80)
6 2jpk_A Bacteriocin lactococcin 15.2 12 0.00041 23.1 -2.0 13 48-60 11-23 (35)
7 3bhp_A UPF0291 protein YNZC; N 14.4 79 0.0027 22.0 1.7 17 154-170 36-52 (60)
8 1rmj_A Insulin-like growth fac 13.2 1.9E+02 0.0064 22.1 3.8 56 173-237 47-103 (107)
9 2l1p_A DNA-binding protein SAT 12.6 77 0.0026 23.4 1.3 18 200-218 58-75 (83)
10 2dsr_G Insulin-like growth fac 12.0 86 0.0029 22.8 1.4 53 176-237 26-80 (82)
No 1
>1pxq_A Subtilisin A; thioether bridge, cyclic peptide, bacteriocin, antimicrobial; HET: 2TL DPN; NMR {Bacillus subtilis} SCOP: j.5.1.2
Probab=55.10 E-value=4.2 Score=24.97 Aligned_cols=19 Identities=37% Similarity=0.784 Sum_probs=15.3
Q ss_pred ccccCceec-CCCCCceecc
Q 025752 35 AVVKGAVCL-DGSPPAYHFD 53 (248)
Q Consensus 35 a~~~gA~Cl-DGs~p~y~~~ 53 (248)
+-+.||-|| ||--|-|-..
T Consensus 6 ~csigaacl~dgpipdfeva 25 (35)
T 1pxq_A 6 TCSIGAACLVDGPIPDFEIA 25 (35)
T ss_dssp TTCSCCCCCTTTTCCCSCCS
T ss_pred ecccchhhhccCCCCCchhh
Confidence 456799999 9999988663
No 2
>2nx6_A Nematocyst outer WALL antigen; disulfide rich, turns, structural protein; NMR {Hydra vulgaris}
Probab=33.22 E-value=15 Score=21.23 Aligned_cols=12 Identities=42% Similarity=1.589 Sum_probs=8.7
Q ss_pred cC-CC-CCCCCCCC
Q 025752 227 CA-YP-CNPTCHNR 238 (248)
Q Consensus 227 C~-yP-CNpTC~~~ 238 (248)
|| || |.|+|...
T Consensus 5 cpqfpscspscapq 18 (27)
T 2nx6_A 5 CPQFPSCSPSCAPQ 18 (27)
T ss_dssp STTCTTCCGGGTTT
T ss_pred CCCCCCCCCccchH
Confidence 65 77 88888643
No 3
>2xfv_A Regulatory protein SWI6; cell-cycle, regulation; 1.90A {Saccharomyces cerevisiae}
Probab=33.01 E-value=11 Score=29.68 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=21.9
Q ss_pred cCceeeeEEeccccccCceecCCCCCc
Q 025752 23 DGFNVGITYVENAVVKGAVCLDGSPPA 49 (248)
Q Consensus 23 ~~~~v~~tl~~~a~~~gA~ClDGs~p~ 49 (248)
+-..|||||+++ .++|-+|||+=.|-
T Consensus 11 ~~~~ipltL~r~-~~~GyFlL~~FlPl 36 (125)
T 2xfv_A 11 PHNEIPLTLTRD-SETGHFLLKHFLPI 36 (125)
T ss_dssp TTSCEEEEEEEE-TTTCCEESGGGHHH
T ss_pred ccccCceEEEEe-cCCCceeHhhHHHH
Confidence 346799999999 67899999998874
No 4
>1m55_A REP protein; endonuclease, rolling circle replication, viral protein; 1.40A {Adeno-associated virus - 5} SCOP: d.89.1.3 PDB: 1rz9_A 1uut_A
Probab=19.21 E-value=1.4e+02 Score=25.44 Aligned_cols=62 Identities=15% Similarity=0.202 Sum_probs=45.5
Q ss_pred Cceecc---CCCCCCcchHHHHHHHHHHHHHHH--hcCCCcccccccc----CCC----CcccCchhhhhhccCC
Q 025752 48 PAYHFD---KGFGAGINNWLVHIEQFYAQVVAT--HGSAKHLPASCTS----RLS----PGLCFFPQYMARQITT 109 (248)
Q Consensus 48 p~y~~~---~G~g~g~~~wl~~~e~~~~~vv~l--~g~~~~lp~~C~~----~~~----p~kCfFpq~~~~~I~T 109 (248)
.+||+| .+.|-+++++=.+++.+++.+++. .|.+-.++..+.- ++. ...+|.+-|++|.++.
T Consensus 86 ~~fHlHvvi~~~~v~~r~~g~~v~~~r~~lv~~~~~g~~p~~~~~f~i~KTk~G~~~k~~d~~FI~~YLLPKlpp 160 (197)
T 1m55_A 86 EYFHLHTLVETSGISSMVLGRYVSQIRAQLVKVVFQGIEPQINDWVAITKVKKGGANKVVDSGYIPAYLLPKVQP 160 (197)
T ss_dssp SCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHTSTTCCCCSTTSEEECBSSTTSCBCCEETTHHHHHTTTCCTT
T ss_pred CCceEEEEecCCCCCcchHHHHHHHHHHHHHHHhhcccCCcccceeeEeecccCCceeecchhHHHHHhccCCCc
Confidence 688988 555678899999999988887773 4666666544542 222 4559999999998865
No 5
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=15.80 E-value=42 Score=24.53 Aligned_cols=12 Identities=50% Similarity=0.819 Sum_probs=9.3
Q ss_pred ccCCChhhhhhh
Q 025752 106 QITTPLFIINAA 117 (248)
Q Consensus 106 ~I~TPlFilnsa 117 (248)
.=|||+|++|..
T Consensus 45 krrspiF~lN~~ 56 (80)
T 2k9p_A 45 SRKTPIFIINQV 56 (80)
T ss_dssp CSCCCHHHHHHH
T ss_pred cccChhhHHHHH
Confidence 358999999854
No 6
>2jpk_A Bacteriocin lactococcin-G subunit beta; peptide, antimicrobial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpm_A
Probab=15.18 E-value=12 Score=23.15 Aligned_cols=13 Identities=69% Similarity=1.285 Sum_probs=10.3
Q ss_pred CceeccCCCCCCc
Q 025752 48 PAYHFDKGFGAGI 60 (248)
Q Consensus 48 p~y~~~~G~g~g~ 60 (248)
|+|-|-.|+|-|+
T Consensus 11 pay~fi~g~~kg~ 23 (35)
T 2jpk_A 11 PAYEFIKGFGKGA 23 (35)
T ss_dssp HHHHHHHHHTTTC
T ss_pred hHHHHHHHHhhhh
Confidence 7899888887763
No 7
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=14.40 E-value=79 Score=21.97 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhhc
Q 025752 154 QTMQSFRTQFLNALAGL 170 (248)
Q Consensus 154 ~~lq~fr~~~l~aL~~~ 170 (248)
+||+.||..|...|..+
T Consensus 36 eYl~~fR~~~r~~L~~i 52 (60)
T 3bhp_A 36 EYLKGFRSSMKNTLKSV 52 (60)
T ss_dssp HHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHHHHhce
Confidence 56667777766666553
No 8
>1rmj_A Insulin-like growth factor binding protein 6; hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.28.1.1
Probab=13.25 E-value=1.9e+02 Score=22.05 Aligned_cols=56 Identities=9% Similarity=0.096 Sum_probs=31.2
Q ss_pred CCCCeEEecCcccccccccccccccCCccccCCccHHHHhhhhhccCCCceeeccCC-CCCCCCCC
Q 025752 173 SSSRGMFIDACYAHCQTEMQETWLRTDSPVLGKMSIAKAVGDWYYDRSPFQKIDCAY-PCNPTCHN 237 (248)
Q Consensus 173 ~~~~G~Fi~SC~~Hcqs~~~~tW~~~~sp~i~~kTia~AvgdWyf~r~~~~~IDC~y-PCNpTC~~ 237 (248)
....|+||+.|-.+..... .+-.+-|-.+.=.+|-.++....+-.-.. +=.|.|..
T Consensus 47 ~~~~~~yiP~Cd~~G~Y~~---------~QC~~s~~~~rG~CWCVD~~G~ei~Gt~~~~g~p~C~~ 103 (107)
T 1rmj_A 47 RGAQTLYVPNCDHRGFYRK---------RQCRSSQGQRRGPCWCVDRMGKSLPGSPDGNGSSSCPT 103 (107)
T ss_dssp TTSSEEEEECCCTTSSCCS---------EEEEEESSSSCCCEEEBCTTCCBCSSCTTTSSTTTSSS
T ss_pred cCCCCccCCCCCCCCCCcc---------eEeccCCCCcCceEEEECCCCCCCCCCcCCCCCCCCCC
Confidence 3668999999998765332 12222222223368988876543333332 34566653
No 9
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=12.64 E-value=77 Score=23.42 Aligned_cols=18 Identities=17% Similarity=0.471 Sum_probs=15.2
Q ss_pred ccccCCccHHHHhhhhhcc
Q 025752 200 SPVLGKMSIAKAVGDWYYD 218 (248)
Q Consensus 200 sp~i~~kTia~AvgdWyf~ 218 (248)
.|.+. ..|+++|+-||-.
T Consensus 58 ~PsL~-~kIAk~fg~w~~~ 75 (83)
T 2l1p_A 58 YANVS-AAKCQEFGRWYKH 75 (83)
T ss_dssp CCCCC-SHHHHHHHHHHHH
T ss_pred CCCch-HHHHHHHHHHHHH
Confidence 57777 8999999999953
No 10
>2dsr_G Insulin-like growth factor-binding protein 4; IGF, IGFBP, protein binding/hormone/growth factor complex; 2.10A {Homo sapiens} SCOP: g.28.1.1
Probab=12.04 E-value=86 Score=22.78 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=27.6
Q ss_pred CeEEecCcccccccccccccccCCccccCCccHHHHhhhhhccCC-CceeeccC-CCCCCCCCC
Q 025752 176 RGMFIDACYAHCQTEMQETWLRTDSPVLGKMSIAKAVGDWYYDRS-PFQKIDCA-YPCNPTCHN 237 (248)
Q Consensus 176 ~G~Fi~SC~~Hcqs~~~~tW~~~~sp~i~~kTia~AvgdWyf~r~-~~~~IDC~-yPCNpTC~~ 237 (248)
.|+||+.|..+.....-- - .+..+|.+- .+|-.++. ...+-+-. -+=.|.|+.
T Consensus 26 ~~~~vP~Cd~~G~y~~~Q-C----~~s~~g~~g----~CWCVd~~~G~~i~gt~~~~g~p~C~~ 80 (82)
T 2dsr_G 26 YIIPIPNCDRNGNFHPKQ-C----HPALDGQRG----KCWCVDRKTGVKLPGGLEPKGELDCHQ 80 (82)
T ss_dssp HHSCCCCBCTTSSBCSEE-E----CCCBTTBCC----CEEEBCTTTCCBCSSCCBCGGGCCCC-
T ss_pred ccccCCcCCCCCCCccee-e----cccCCCCCc----eEEEecCCCCEECCCCccCCCCCCCCc
Confidence 488999999987543210 1 122222222 69998873 43332232 245666654
Done!