Query 025752
Match_columns 248
No_of_seqs 174 out of 260
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 16:50:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025752.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025752hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rmja_ g.28.1.1 (A:) Insulin- 18.3 51 0.0037 23.5 3.6 25 164-188 38-62 (107)
2 d1sp2a_ g.37.1.1 (A:) Transcri 10.5 42 0.003 18.5 0.9 10 228-237 2-12 (31)
3 d2dsqg1 g.28.1.1 (G:149-231) I 10.5 31 0.0023 23.5 0.4 17 172-188 22-38 (83)
4 d1fi4a2 d.58.26.2 (A:191-393) 10.5 20 0.0015 28.6 -0.8 22 34-55 66-87 (203)
5 d1ubdc4 g.37.1.1 (C:381-408) Y 9.2 52 0.0038 17.9 1.0 7 227-233 5-12 (28)
6 d1yvra1 a.118.25.1 (A:5-363) 6 8.7 49 0.0036 28.0 1.0 17 204-220 140-156 (359)
7 d1a1ia1 g.37.1.1 (A:103-131) Z 8.6 47 0.0034 18.1 0.6 8 226-233 4-12 (29)
8 d2dloa2 g.39.1.3 (A:43-75) Thy 7.9 55 0.004 18.7 0.7 8 40-47 6-13 (33)
9 d1vsra_ c.52.1.15 (A:) Very sh 7.1 68 0.005 23.6 1.1 16 173-188 34-49 (134)
10 d2glia3 g.37.1.1 (A:168-197) F 7.0 75 0.0054 17.3 1.0 8 227-234 5-13 (30)
No 1
>d1rmja_ g.28.1.1 (A:) Insulin-like growth factor binding protein 6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.30 E-value=51 Score=23.50 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=16.3
Q ss_pred HHHHhhccCCCCCeEEecCcccccc
Q 025752 164 LNALAGLGISSSRGMFIDACYAHCQ 188 (248)
Q Consensus 164 l~aL~~~~~~~~~G~Fi~SC~~Hcq 188 (248)
++.|+........|+|||-|-.+..
T Consensus 38 l~~l~~~~~~~~~~~fiP~Cd~dG~ 62 (107)
T d1rmja_ 38 LQQLQTEVYRGAQTLYVPNCDHRGF 62 (107)
T ss_dssp HHHHHHHSTTTSSEEEEECCCTTSS
T ss_pred HHHHHhccccCCCCcCCcCcCCCCC
Confidence 3344443444567999999977654
No 2
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.51 E-value=42 Score=18.54 Aligned_cols=10 Identities=20% Similarity=0.813 Sum_probs=4.7
Q ss_pred CCCCC-CCCCC
Q 025752 228 AYPCN-PTCHN 237 (248)
Q Consensus 228 ~yPCN-pTC~~ 237 (248)
||.|+ |.|..
T Consensus 2 pf~C~~~~C~k 12 (31)
T d1sp2a_ 2 PFMCTWSYCGK 12 (31)
T ss_dssp CCBCCSTTCCC
T ss_pred cCCCcCCCCCc
Confidence 44454 45543
No 3
>d2dsqg1 g.28.1.1 (G:149-231) Insulin-like growth factor-binding protein 1, IGFBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.47 E-value=31 Score=23.47 Aligned_cols=17 Identities=6% Similarity=0.151 Sum_probs=10.7
Q ss_pred CCCCCeEEecCcccccc
Q 025752 172 ISSSRGMFIDACYAHCQ 188 (248)
Q Consensus 172 ~~~~~G~Fi~SC~~Hcq 188 (248)
...-.|+|||.|-.+..
T Consensus 22 ~~~~~~~yiP~C~~dG~ 38 (83)
T d2dsqg1 22 GEEISKFYLPNCNKNGF 38 (83)
T ss_dssp ----CCBCCCCBCTTSS
T ss_pred ccCcCCCCCCCcCCCCC
Confidence 34457899999977654
No 4
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.46 E-value=20 Score=28.58 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=18.1
Q ss_pred cccccCceecCCCCCceeccCC
Q 025752 34 NAVVKGAVCLDGSPPAYHFDKG 55 (248)
Q Consensus 34 ~a~~~gA~ClDGs~p~y~~~~G 55 (248)
++..-=|+|||..||-.|+.+-
T Consensus 66 ds~~mHA~~l~s~Ppi~Ylnd~ 87 (203)
T d1fi4a2 66 DSNSFHATCLDSFPPIFYMNDT 87 (203)
T ss_dssp HHHHHHHHHHTSSSCCCCCCHH
T ss_pred hHHHHHHHHhcCCCCeEEECch
Confidence 4566679999999999999554
No 5
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.22 E-value=52 Score=17.86 Aligned_cols=7 Identities=43% Similarity=1.469 Sum_probs=3.7
Q ss_pred cCCC-CCC
Q 025752 227 CAYP-CNP 233 (248)
Q Consensus 227 C~yP-CNp 233 (248)
|+|| |+.
T Consensus 5 C~~~gC~K 12 (28)
T d1ubdc4 5 CPFDGCNK 12 (28)
T ss_dssp CCSTTCCC
T ss_pred CCCCCcCC
Confidence 6665 443
No 6
>d1yvra1 a.118.25.1 (A:5-363) 60-kda SS-aARo ribonucleoprotein {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=8.69 E-value=49 Score=27.97 Aligned_cols=17 Identities=35% Similarity=0.675 Sum_probs=14.9
Q ss_pred CCccHHHHhhhhhccCC
Q 025752 204 GKMSIAKAVGDWYYDRS 220 (248)
Q Consensus 204 ~~kTia~AvgdWyf~r~ 220 (248)
=|+++.+||.+||.++.
T Consensus 140 ~gr~lrkav~~Wy~~~~ 156 (359)
T d1yvra1 140 WGRALRKAVSDWYNTKD 156 (359)
T ss_dssp CCHHHHHHHHHHHHTSC
T ss_pred ccHHHHHHHHHHHhcCC
Confidence 36899999999998876
No 7
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.63 E-value=47 Score=18.13 Aligned_cols=8 Identities=25% Similarity=0.945 Sum_probs=5.1
Q ss_pred ccCCC-CCC
Q 025752 226 DCAYP-CNP 233 (248)
Q Consensus 226 DC~yP-CNp 233 (248)
-|+|| |+.
T Consensus 4 ~C~~~gC~k 12 (29)
T d1a1ia1 4 ACPVESCDR 12 (29)
T ss_dssp ECCSTTCCC
T ss_pred ECCCCCCCc
Confidence 37777 654
No 8
>d2dloa2 g.39.1.3 (A:43-75) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.94 E-value=55 Score=18.70 Aligned_cols=8 Identities=50% Similarity=0.680 Sum_probs=5.8
Q ss_pred ceecCCCC
Q 025752 40 AVCLDGSP 47 (248)
Q Consensus 40 A~ClDGs~ 47 (248)
..||||-|
T Consensus 6 ~~~LDGvP 13 (33)
T d2dloa2 6 HRGLDGIP 13 (33)
T ss_dssp CCBCTTSC
T ss_pred CcccCCCc
Confidence 35788876
No 9
>d1vsra_ c.52.1.15 (A:) Very short patch repair (VSR) endonuclease {Escherichia coli [TaxId: 562]}
Probab=7.05 E-value=68 Score=23.65 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=12.9
Q ss_pred CCCCeEEecCcccccc
Q 025752 173 SSSRGMFIDACYAHCQ 188 (248)
Q Consensus 173 ~~~~G~Fi~SC~~Hcq 188 (248)
+.+..+|+++||=|.-
T Consensus 34 ~~k~aIfvdGcFWH~h 49 (134)
T d1vsra_ 34 EYRCVIFTHGCFWHHH 49 (134)
T ss_dssp GGTEEEEEECTTTTTC
T ss_pred CccEEEEEcCccccCC
Confidence 3467899999999854
No 10
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.99 E-value=75 Score=17.33 Aligned_cols=8 Identities=25% Similarity=1.223 Sum_probs=0.0
Q ss_pred cCCC-CCCC
Q 025752 227 CAYP-CNPT 234 (248)
Q Consensus 227 C~yP-CNpT 234 (248)
|+|| |+.+
T Consensus 5 C~~~gCgk~ 13 (30)
T d2glia3 5 CTFEGCRKS 13 (30)
T ss_dssp CCSTTCCCC
T ss_pred CCCCCCCce
Done!