BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025756
(248 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SXU|B Chain B, Structure Of The E. Coli Ssb-Dna Polymerase Iii Interface
Length = 138
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 188 MEGYRQDWKLS---FERDTVSRGGWQQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILK 244
M R+DW+L + ++ R G QG I +A P + + D A DP + D+L+
Sbjct: 1 MGTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVANDLPALTDPLVSDVLR 60
Query: 245 A 245
A
Sbjct: 61 A 61
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 82 DVNGNAIPISDLWKDRKAVVAFARHFG--CVLCRKRADYLAAKKDVMDASGVALVLIGPG 139
D NG I +SDL K F +G C C+K+ Y+A + + GV +V + G
Sbjct: 13 DTNGKRIELSDL----KGKGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQGVEIVAVNVG 68
Query: 140 S 140
Sbjct: 69 E 69
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 82 DVNGNAIPISDLWKDRKAVVAFARHFG--CVLCRKRADYLAAKKDVMDASGVALVLIGPG 139
D NG I +SDL K F +G C C+K Y+A + + GV +V + G
Sbjct: 10 DTNGKRIELSDL----KGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQGVEIVAVNVG 65
Query: 140 S 140
Sbjct: 66 E 66
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 82 DVNGNAIPISDLWKDRKAVVAFARHFG--CVLCRKRADYLAAKKDVMDASGVALVLIGPG 139
D NG I +SDL K F +G C C+K Y+A + + GV +V + G
Sbjct: 13 DTNGKRIELSDL----KGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQGVEIVAVNVG 68
Query: 140 SVEQA 144
+ A
Sbjct: 69 ESKIA 73
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 82 DVNGNAIPISDLWKDRKAVVAFARHFG--CVLCRKRADYLAAKKDVMDASGVALVLIGPG 139
D NG I +SDL K F +G C C+K Y+A + + GV +V + G
Sbjct: 13 DTNGKRIELSDL----KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVG 68
Query: 140 S 140
Sbjct: 69 E 69
>pdb|2BGI|A Chain A, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus Complexed With Three Molecules
Of The Detergent N-Heptyl-Beta-D-Thioglucoside At 1.7
Angstroms
pdb|2BGJ|A Chain A, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus At 2.1 Angstroms
pdb|2BGJ|B Chain B, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus At 2.1 Angstroms
pdb|2BGJ|C Chain C, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus At 2.1 Angstroms
pdb|2BGJ|D Chain D, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus At 2.1 Angstroms
pdb|2VNH|A Chain A, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus In Complex With Nadp. Form Ii At
2. 27 Angstroms Resolution
pdb|2VNI|A Chain A, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus In Complex With 2p-Amp At 2.37
Angstroms Resolution
pdb|2VNJ|A Chain A, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus In Complex With Nadp. Form I At
2. 13 Angstroms Resolution
pdb|2VNK|A Chain A, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus In Complex With Nadp. Form Iii
At 1. 93 Angstroms Resolution
pdb|2VNK|B Chain B, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus In Complex With Nadp. Form Iii
At 1. 93 Angstroms Resolution
pdb|2VNK|C Chain C, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus In Complex With Nadp. Form Iii
At 1. 93 Angstroms Resolution
pdb|2VNK|D Chain D, X-Ray Structure Of The Ferredoxin-Nadp(H) Reductase From
Rhodobacter Capsulatus In Complex With Nadp. Form Iii
At 1. 93 Angstroms Resolution
Length = 272
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 13 TTVRFNRLTNPAPTRILPNQSPLWRPRHWNKTL 45
TTV N T AP ++LP+ + RHW TL
Sbjct: 1 TTV--NETTPIAPAKVLPDAQTVTSVRHWTDTL 31
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,273,706
Number of Sequences: 62578
Number of extensions: 279380
Number of successful extensions: 503
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 502
Number of HSP's gapped (non-prelim): 6
length of query: 248
length of database: 14,973,337
effective HSP length: 96
effective length of query: 152
effective length of database: 8,965,849
effective search space: 1362809048
effective search space used: 1362809048
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)